ce26ad06da
polishing and introduction of locally derived grid in FFT subroutine
2016-03-16 15:01:22 -04:00
6197e839c9
fixed missing file extension when adding in-place
2016-03-15 14:52:10 -04:00
f857353e16
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development
2016-03-11 12:49:47 +01:00
b0dedb8cbd
=addOrientation can do the same (and more)
2016-03-09 19:02:28 +01:00
e9338200eb
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development
2016-03-09 12:28:52 -05:00
b933359f17
clarified text of error message complaining about wrong input dimension
2016-03-09 12:28:36 -05:00
4dfd59a9e2
output complete microstructure and texture info instead of limiting to grainIDs used in geometry
2016-03-07 22:15:40 -05:00
f13ba71f6e
fixed typo
2016-03-04 17:24:13 +01:00
48233d2767
missing variable
2016-03-03 14:58:04 +01:00
a51f2a29f6
cleaning
2016-03-03 14:53:55 +01:00
76a0a93c42
removed unneeded variables, fixed docstrings. missing variable jc in Barlat1989 from 46c33b0
2016-03-03 14:52:47 +01:00
3ff3bb1a5b
pre processing finished
2016-03-03 14:44:51 +01:00
93d7643875
no long lines anymore and prospector is also happy
2016-03-03 14:44:29 +01:00
9fa49b8584
vtk files, mainly removed from vtk import *
2016-03-02 13:52:33 +01:00
f7fedc4744
next bunch of accepted scripts
2016-03-02 13:50:57 +01:00
3ed3073eff
more...
2016-03-02 11:29:07 +01:00
e89923d6d3
next round
2016-03-02 11:11:20 +01:00
5d7e138a9b
long line
2016-03-02 10:55:21 +01:00
f77de7ac6e
adjusting style (mainly long lines an "== None")
2016-03-02 10:52:24 +01:00
c1dd5febd5
some more scripts passed
2016-03-01 22:27:21 +01:00
974b8cde41
some more syntax improvements
2016-03-01 22:13:57 +01:00
043f2faeb3
line too long
2016-03-01 21:59:59 +01:00
98476ea29c
more improved scripts
2016-03-01 21:35:59 +01:00
9cfc27d295
line too long (132 lines max code, like Fortran, 159 including comments, Python standard)
2016-03-01 21:18:32 +01:00
80dc23d93d
following "prospector -t pep8 -t pyflakes -t dodgy -t profile-validator -t pep257"
2016-03-01 21:11:43 +01:00
e55d0ae3ca
further attemps to make it conform with best python practice
2016-03-01 20:44:43 +01:00
6eb170bc07
still struggling with prospector
2016-03-01 19:37:31 +01:00
3b33d320b1
getting pyflakes to ignore
2016-03-01 19:06:00 +01:00
2a50c6bf86
using prospector --tool=dodgy --tool=pyflakes -M to find python flaws
2016-03-01 18:25:14 +01:00
7c9d344601
python files now report their version depending on VERSION file in $DAMASK_ROOT
2016-01-27 17:06:00 +00:00
f693ead989
adding material.config to header
2015-12-28 16:36:26 +00:00
c710709b1a
example Makefile typically does not work, deleted
2015-12-15 14:34:03 +00:00
19ddbc9b21
fixed typo and simplified
2015-12-15 06:16:47 +00:00
6de6b8b87f
fixed wrong variable name when using pre-existing microstructures from table.
...
added switch to skip effort for tolerance == 0.
2015-12-09 14:13:19 +00:00
d76fcb4be8
was giving wrong results
2015-12-05 21:34:39 +00:00
7eb7a4e8cd
changed to use routine for symmetric matrices as ascii table cannot handle complex number anyway. further advantage: eigvals and eigvectors will be odered
2015-12-04 22:34:19 +00:00
35202494c2
fixed issue caused by using -r twice as option label.
2015-12-04 04:33:23 +00:00
784c78a3b0
removed defunct option to output labels as column vector.
2015-12-04 04:31:53 +00:00
937634d703
added group shuffling (i.e. exchanging unique values)
2015-12-04 01:17:45 +00:00
08014a7030
small polishing
2015-12-04 01:16:49 +00:00
3fb1f02382
forgot $Id$ and line endings…
2015-12-03 22:33:38 +00:00
2efc602854
Smooth geometry by selecting most frequent microstructure index within given stencil at each location.
2015-12-03 22:32:28 +00:00
8f5c3b9ad7
small polishing.
2015-12-02 23:13:10 +00:00
55b33e5597
added option “inplace” to directly modify VTK file instead of creating copy_added.
2015-12-02 23:10:14 +00:00
f49091c952
addDeformedConfiguration without core module
2015-12-02 20:53:02 +00:00
6ecbd3ae56
makefile had problems with static flag, mentat spectral Box was still using table.croak
2015-12-02 20:02:19 +00:00
0ffcb7fdaf
cleaning
2015-12-01 16:37:20 +00:00
f61f87e6d0
updated reference results (visual impression much better now) for geom_fromTable and silenced verbose debug output per default since it's causing problems when piping to file
2015-11-30 16:22:59 +00:00
cee9a345b7
added option to label microstructure.
...
updated to most recent asciitable/damask.util infrastructure.
2015-11-20 16:30:55 +00:00
0db4a7fad0
added debug messages.
...
added background message for estimated time (+ grain info).
fixed functionality—finally works as intended (lump orientations within threshold).
2015-11-20 16:27:57 +00:00
40c2a5dd6d
differentiate name for undeformed and deformed coordinates makes sense. Still not happy with the naming though
2015-11-20 15:58:32 +00:00
24382ed827
unified options to enable automated parsing for documentation
2015-11-16 10:52:56 +00:00
1336c8d0e6
now using default 2D output for geometry
2015-11-16 09:54:39 +00:00
302178ebb4
some trouble since clean was already in PETSc rules
2015-11-14 09:47:18 +00:00
4c51c15795
changed option to —coordinates.
...
gracefully extend points to be 3D.
2015-11-14 01:52:31 +00:00
4b85941a94
some comments
2015-11-11 19:51:34 +00:00
4ca566efa8
geom_rotate: rotates a geometry
2015-11-11 19:51:17 +00:00
2c9f9981e2
polishing of addRectiliearGridData.
...
subsumed functionality of addVoxelgridData into it.
2015-11-10 01:49:32 +00:00
434bf2413e
simplified if—else with a = b if c else d
2015-11-10 01:35:26 +00:00
ccf7530121
added output selection “rodrigues”
2015-11-10 01:34:10 +00:00
fe1dbf2ea0
output file name now contains both position and mode.
...
e.g. ${prefix}_ipinitialcoord(point).vtr
2015-11-03 21:44:36 +00:00
ad06fc1a77
fixed buggy mapIncremental behavior for anything else than averaging (the standard case luckily…)
2015-10-27 20:16:24 +00:00
072be9c1bb
help now working if no mentat release present.
...
improved style
2015-10-26 19:34:44 +00:00
41f1994569
new style and test for grain growth
2015-10-26 17:59:36 +00:00
ebf20f2ebc
unified style and other minor improvements
2015-10-15 19:51:27 +00:00
e72ae63873
geom canvas crashed for some parameters, now giving error message. table class now handles dismiss correctly
2015-10-14 21:35:56 +00:00
dd0167821f
corrected reporting and convergence check
2015-10-14 20:33:22 +00:00
bdfd9c69bb
simplified dimension handling
2015-10-14 18:45:33 +00:00
46564d3df8
commenting and introducing functions for regulary used code
2015-10-14 18:40:02 +00:00
180d4625c1
trying to simplify
2015-10-13 21:00:12 +00:00
8fac635c15
made hybridIA stuff working again
2015-10-13 17:02:07 +00:00
f1482a2af4
fixed buggy behavior in case of non unit-sized geometry
2015-10-12 18:10:26 +00:00
723f135177
can now handle tiling of values (scalar [string,number] spread out to vector and such)
2015-10-09 14:22:41 +00:00
196afb9b31
adopted change in named argument (strict -> SST) for disorientation
2015-10-09 13:06:51 +00:00
fc9d290339
unified structure and names, added test for vtk{point/voxel}cloud
2015-10-09 11:24:26 +00:00
8fe443d068
clearer naming
2015-10-09 06:26:18 +00:00
61090c955d
removed code doubling
2015-10-09 05:51:58 +00:00
6d74cbf374
simpliefied scripts for vtk generation and introduce simple test to check if they run
2015-10-08 21:30:33 +00:00
fd04e0763b
legacy code geom... can be achieved by combining voronoi tesselation and geom_rescale, for ipfs can be plotted from ascii table with matlab
2015-10-08 17:41:35 +00:00
127c03c525
unneeded module
2015-10-06 19:29:32 +00:00
1bd8167445
requires core module and is most likely not used.
...
When needed, a Complete, lean redesign is simpler than updating to current coding style
2015-10-06 18:11:58 +00:00
f014cef043
improved performance for non-weighted Voronoi Tessellation
2015-10-06 18:03:06 +00:00
22048cb546
fixed a bug
2015-10-02 01:59:59 +00:00
2c6a6f6530
fixed bug.
...
introduced possibility for poke bounding box in all dimensions.
2015-10-02 00:21:23 +00:00
a2a7664e8e
default to 0–1 for z range
2015-09-29 22:35:57 +00:00
21bcafe3e4
seeds coordinates now rescaled to proper box size.
2015-09-29 22:27:46 +00:00
863fe5ddf0
needs modules “math” and “random” for user-supplied conditions…
...
(do not remove through pyflakes—shall we introduce dummy code to keep the modules “active”?)
2015-09-29 22:27:07 +00:00
202ee00049
Eliminated redundant searches for similar orientations in neighboring points…speeds up script by 2 orders of magnitude
2015-09-28 19:03:24 +00:00
55dc2b419a
warn if unexpected file size is encoutered
2015-09-24 17:07:27 +00:00
4ead24a134
more tests
2015-09-24 16:52:58 +00:00
f4c53e0be8
removed warnings by pyflakes, implemented new croak functionality
2015-09-24 15:34:27 +00:00
e1157126bc
cleaned with pyflakes, added test for seed generation
2015-09-24 13:21:44 +00:00
f4d4a8e1ec
adopted philips changes for reporting, using pyflakes to clean up
2015-09-24 09:24:42 +00:00
3c901e5549
added option for Euler angle output in degrees
2015-09-23 23:05:28 +00:00
3fa0312087
update usage of asciitable to new interface
2015-09-23 19:20:18 +00:00
42ac7902f7
indents wrong in fortran, seeds_fromDistribution bugfix and using ASCII table facilities
2015-09-20 21:03:10 +00:00
666b438e6a
using ASCII table
2015-09-18 16:12:27 +00:00
6a3a0f3859
allow asciitable to use file handle instead of string (following e.g. numpy.genfromtxt)
2015-09-16 19:44:11 +00:00
fb48719283
fixed critical bugs
2015-09-15 19:02:59 +00:00
6f20651250
copy and paste error and new interface for test
2015-09-12 19:29:34 +00:00
6683c1fb73
fixed a bug
2015-09-12 16:34:31 +00:00
0c7f4e690a
fixed reference, still not 100% sure if everything is correct, but apparently the test never run
2015-09-12 16:30:28 +00:00
c53bf02fea
changed back to old behavior
2015-09-11 15:38:03 +00:00
5f9fae1b75
simplified reporting using "emph"
2015-09-11 12:55:43 +00:00
c69e7ec149
switched conjugation to apply to symmetric equivalents instead of incoming quaternion.
...
passing-down of degree option handled directly.
2015-09-09 22:43:56 +00:00
e0d5cef047
Script to merge multiple ASCIItables. Stops at end of shortest one.
2015-09-09 22:22:29 +00:00
70f906a2c4
follow new syntax and bugfix, marc 2014 is default
2015-09-09 16:45:49 +00:00
c9dcb41bac
fixed sorting logic to respect numerical values of vector data (i.e. 1,2,3,….,10,11,… instead of 10,11,12,1,2,…)
2015-09-08 23:55:44 +00:00
1c164574ac
more fixes following new possibilities of ascii table
2015-09-08 19:42:14 +00:00
4e9b27b0ce
failure in last commit, using standard keyword eulerangles instead of eulers
2015-09-08 18:48:58 +00:00
c2d27d56fa
updated to new ASCII table style
2015-09-08 15:26:40 +00:00
9a2c49ff50
corrected label header
2015-09-08 13:45:46 +00:00
dad0fdfb85
still needed
2015-09-05 14:59:52 +00:00
45a3568b40
bugfix for last commit
2015-09-05 14:46:57 +00:00
cf90b764f8
calculation was for nyquist freq not fully correct.
...
See Notes on FFT-based differentiation
Steven G. Johnson, MIT Applied Mathematics
Created April, 2011, updated May 4, 2011:
2015-09-05 11:51:36 +00:00
08f8746182
made some more scripts working again
2015-08-31 21:22:44 +00:00
8ff79e1eb0
NaN now considered transparent
2015-08-31 17:41:00 +00:00
8f79744f2c
now works with (rounded) floating point numbers as mapping indices
2015-08-31 16:01:11 +00:00
6100185855
switch to new ASCII table class was buggy, using damask.util.emph
2015-08-31 11:00:45 +00:00
115518a2c8
minor changes in commit and setting the script ID properly
2015-08-29 15:10:43 +00:00
cff6307779
Update existing value(s) to expression(s) respecting condition.
2015-08-29 00:54:45 +00:00
b4768013a0
fix output error in output geom file.
2015-08-26 16:39:33 +00:00
d8afe9be23
Add scalars, vectors, and/or an RGB tuple from an ASCIItable to existing VTK rectilinear grid (.vtr/.vtk).
2015-08-25 00:39:37 +00:00
cec6d7d220
for generating rectilinear grid of either cell type or point type from ASCII table.
2015-08-24 20:48:50 +00:00
7961b486cb
now compatible with updated Orientation.disorientation() output, i.e., select item [0] (the quaternion).
2015-08-24 14:20:09 +00:00
c215139ce1
now works with recent changes of ASCIItable and with STDIN to STDOUT.
2015-08-24 14:01:24 +00:00
afc88c7029
now works with recent changes of ASCIItable.
2015-08-24 13:42:29 +00:00
38992fdc37
now use outsourced damask.util methods
2015-08-23 23:19:40 +00:00
00b8660203
redundant.
...
functionality available in “geom_fromTable”…
2015-08-20 19:46:11 +00:00
c85306257d
redundant.
...
improved functionality now via “ang_toTable” and “geom_fromTable”…
2015-08-20 19:44:17 +00:00
63d5506388
adopting further simplifications provided through ASCIItable class.
2015-08-20 19:42:05 +00:00
9439cf7278
add cumulative (first to current) values of given labels to table
2015-08-20 19:40:45 +00:00
05a8124d82
simplified rescaling interpretation
2015-08-19 18:30:50 +00:00
2a13d78196
did not run
2015-08-18 17:24:15 +00:00
324c5b36d3
restructured to get help even without mentat release
2015-08-18 16:39:47 +00:00
70daa8663f
adoption of new ASCIItable API
2015-08-18 14:37:32 +00:00
ca1fe6bb82
updated to new ASCII table style
2015-08-18 07:56:03 +00:00
d0b75b5a10
fixed table.croak error in last commit
2015-08-18 04:41:36 +00:00
befd6aa7ff
fixed stderr output (croaking..) as per new ASCII table style
2015-08-18 04:33:45 +00:00
419a612d0e
updated to new ASCII table style
2015-08-18 04:32:19 +00:00
ac7f443595
adopted new ASCIItable API
2015-08-13 21:25:08 +00:00
7ca1e77495
bug fixing
2015-08-13 08:32:09 +00:00
f982f42839
convert TSL/EDAX ang file format to proper ASCIItable.
2015-08-12 22:14:19 +00:00
1976cf44c1
fixed os.path.splitext bug when using STDIN input
2015-08-12 21:56:37 +00:00
3e65c324de
adopted changes in ASCIItable API
2015-08-12 21:52:33 +00:00
dfbd2fd013
fixed bug for STDIN processing
2015-08-12 21:28:07 +00:00
1149053c61
updated to new ASCII table style
2015-08-12 20:59:10 +00:00
9ee49b2c3b
adopted recent changes to API in ASCIItable.
...
removed Voronoi method from core module.
fixed buggy Laguerre tessellation (wrong seed scaling, wrong x,y,z order)
2015-08-12 20:55:53 +00:00
8217fdb115
adopted recent changes to API in ASCIItable.
2015-08-12 18:56:40 +00:00
31a6ac328d
adjusted to new ASCII table style and bugfix
2015-08-12 18:53:39 +00:00
cd70ec5a38
adopted recent changes to API in ASCIItable.
2015-08-12 18:43:11 +00:00
cd9a802a2b
adoption of recent API change in ASCIItable.
2015-08-12 18:09:40 +00:00
5dad5df588
adoption of recent API change in ASCIItable.
2015-08-12 17:47:38 +00:00
3097c87bea
adoption of recent API change in ASCIItable.
2015-08-12 17:43:49 +00:00
35863e0229
fixed averageDown and made it's test running
2015-08-12 13:43:05 +00:00
bceeb0964c
corrected calculation of expected file size for legacy files beyond the 4 GB limit
2015-08-10 18:48:48 +00:00
126cea24ce
fixed syntax and undefined variable calling errors
2015-08-09 22:12:49 +00:00
57dfa6a87e
added fall-back to non-multithreading execution when using only single CPU.
2015-08-08 21:43:21 +00:00
31f6d22d89
added option (force) to override selective seeding check.
2015-08-08 20:20:53 +00:00
889a5807bb
more conservative (and probably appropriate) variance default for Laguerre tessellations: 1.0 —> 0.1
2015-08-08 20:12:26 +00:00
bbeb210708
functionality now provided by more general “geom_fromImage”
2015-08-07 22:16:40 +00:00
9729c03c00
removed obsolete code. added croak about number of cpus used.
2015-08-07 22:15:24 +00:00
a4772343b0
adopted new ASCIItable API. some polishing.
2015-08-07 22:08:54 +00:00
4ed56a8ba6
removed debugging print statements
2015-08-07 20:52:57 +00:00
d4e748b654
outsourced multiple repetitive functions into ASCIItable class.
...
changed ASCIItable API from file-handles to filenames.
adopted these changes in pre and post processing scripts.
unified behavior and look.
fixed bugs here and there.
improved functionality.
2015-08-07 19:03:26 +00:00
de90a04374
assign indices from microstructure column if present for laguerre tessellation
2015-07-30 04:42:00 +00:00
599bb768ef
index microstructure from 1 instead of zero for laguerre tessellation
2015-07-28 22:15:32 +00:00
020a3e2634
superfluous since same can be (even more flexibly) accomplished with:
...
reLabel -l old -s old+tag
2015-07-26 00:41:42 +00:00
0db33f21b5
superfluous since same can be accomplished with:
...
showTable -l -d (labels and data)
2015-07-26 00:39:32 +00:00
b69a422529
Generate the geometry description of a directional non-equiaxed grain structure, e.g., RVE cutted from a cold-rolling sheet. '--reduct' specifies the thickness reduction after rolling, and '-n' specified the number of samples cutted, e.g., n=5, then five samples will be cutted from the sheet along theta = 0 (the rolling direction), theta = 22.5, theta = 45, theta = 67.5, and theta = 90 (the transversal direction).
2015-07-24 14:12:10 +00:00
657ed7ed35
group voxels/pts by orientation and position, require spicy.
2015-07-24 13:30:33 +00:00
fc0e29c45b
removed erroneous rescaling of Laguerre weights.
2015-07-22 22:34:40 +00:00
b15f68905f
fig a bug.
2015-07-21 15:38:12 +00:00
331a4c5775
add the number of the re-constructed orientation into the name of output files.
2015-07-18 17:25:05 +00:00
e08b7bd02e
forgot to rescale transparency mask by pixelsizes.
2015-07-16 22:34:26 +00:00
3c9d6df889
fixed typo in last commit
2015-07-15 18:15:39 +00:00
6ebc490207
fixed broken functionality by adopting new ASCIItable class output for data_readArray().
2015-07-15 16:57:03 +00:00
d676fdc1ce
fixed default behavior of symmetry. used to advertise having cubic symmetry but was using [].
2015-07-10 16:58:30 +00:00
dce0501358
script to rename labels in an ASCIItable
2015-07-10 16:28:01 +00:00
f8658ffea1
added “gap” value to render pieces of resulting image transparent.
2015-07-07 14:53:55 +00:00
812d17f91c
streamlined column processing based on recently introduced asciitable functionality.
2015-07-01 15:48:34 +00:00
ef243d3e19
added references
2015-06-30 14:52:48 +00:00
61e3987bfa
extract the deformation anisotropic coefficients (r values) and strength anisotropic coefficients (normalized yield stress) automatically.
2015-06-29 15:57:31 +00:00
47249bb52a
added possibility to scale deformation fluctuation field.
2015-06-29 09:44:49 +00:00
fcdd80bba3
switched order of command line options to make consequence of “degrees” switch more clear, i.e., it affects both the tolerance and Euler angles…
2015-06-29 09:40:44 +00:00
129026662c
fixed small bugs.
...
modernized file treatment.
improved Laguerre speed by a factor of 2 due to precalculating the squared weights.
2015-06-27 08:41:08 +00:00
088299daf2
fix the bug in the calculation of RMSD, replace N with sqrt(N).
2015-06-25 12:41:26 +00:00
e310763c52
Novel script to generate geometry description and material configuration from position, phase, and orientation data in an ASCIItable.
...
Can deal with phase-specific lattice symmetry, condenses orientations within a given angular threshold, and might be used in lieu of geom_fromANG when replacing the ANG header.
2015-06-21 11:56:05 +00:00
9b1f16e99e
report data range.
...
gracefully deal with constant field (below 1e-8 noise).
2015-06-19 11:36:21 +00:00
acad1246f3
fixed wrong variable name for quaternions as rotation options
2015-06-19 04:38:00 +00:00
94423cc7ac
added scriptID line “ removed during last commit”
2015-06-17 19:47:50 +00:00
012c830eff
removed writing of debugging statement to final output
2015-06-17 19:44:01 +00:00
e440305532
streamlined ASCIItable error checking.
2015-06-17 06:52:43 +00:00
5cc7b60a88
simplified processing of ASCIItables by utilizing the improved class methods.
...
modernized file looping.
2015-06-16 17:21:24 +00:00
d57c7568dd
simplified processing of ASCIItables by utilizing the improved class methods.
...
modernized file looping.
updated help.
2015-06-16 05:42:11 +00:00
c089ff9256
now with $ID$ and correct line endings…
2015-06-15 18:13:06 +00:00
6086baba52
Generate PNG image from scalar data on grid deformed by (periodic) deformation gradient.
2015-06-15 18:12:38 +00:00
a5b3e9d64c
typos fixed
2015-06-14 05:51:53 +00:00
37792f67df
automatically figure dimension of labels to tag.
2015-06-13 11:55:20 +00:00
c7f59c6482
change angle into radian.
2015-06-11 17:57:23 +00:00
bfe76794af
add the output of ".ang" file
2015-06-11 16:50:29 +00:00
c45a0ce55e
improved stability for geom_fromAng. no longer depends on correct header information.
...
geom_fromVPSC with correct size determination now
2015-06-11 10:06:53 +00:00
e243632eb5
simplifications by adopting functionality provided by new asciitable class methods.
2015-06-08 05:07:14 +00:00
d99e34d870
typo caused problems with more than one tensor
2015-06-06 15:42:29 +00:00
129446e687
simplified script. deals now only with single format at a time. result is printed to STDOUT unless “basename” option specified.
2015-06-06 11:12:07 +00:00
b7f98c00d6
input file handling now save for large file count.
...
streamlining of input column detection.
fixed bug iterating through “grainIDs” instead of “grain”.
proper closing and dismissal of output table file.
2015-06-05 11:50:15 +00:00
bb9e080790
input file handling now save for large file count.
...
reshape input rotation matrix to (3,3).
2015-06-05 11:47:27 +00:00
5adbe74b10
changed library function name table.labels_index() to table.label_index()
2015-06-05 11:44:17 +00:00
f50927b99f
Create seeds file by poking at 45 degree through given geom file.
...
Mimics APS Beamline 34-ID-E DAXM poking.
2015-06-05 11:41:44 +00:00
6eb83530b8
streamlining
2015-06-05 11:34:41 +00:00
2877066a6c
removed debug statement and simplified
2015-06-04 08:51:10 +00:00
bb677a26aa
added interface for predefined colormaps
2015-05-29 18:50:54 +00:00
92654dc2cd
fixed syntax bug, instantiating of Color object, and file closure.
2015-05-29 18:36:09 +00:00
54746c85d3
fixed bug for only blacklisting.
2015-05-28 22:31:32 +00:00
147cc91496
some polishing to laguerre tessellation
2015-05-28 20:57:03 +00:00
c327735c0d
order of whitelist is maintained in output (only if no blacklist is specified). allows to rearrange column order in tables.
2015-05-27 23:02:11 +00:00
c5349ab041
some polishing for option parser
2015-05-26 20:22:11 +00:00
73c6bd767f
added options for selective seed picking based on Mitchell’s best candidate algorithm for more uniformly distributed (spatially) seeds points
2015-05-26 20:13:35 +00:00
4107d5d1d2
Script to calculate Quaternion from input orientation matrix
2015-05-26 06:38:48 +00:00
5900fa4bf5
corrected defaults and simplified loops
2015-05-25 10:49:20 +00:00
1f160dfd72
FFT was at single precision only
2015-05-24 16:35:37 +00:00
e8fb49edc6
missing bracket
2015-05-22 06:17:35 +00:00
737e474cea
consistent handling of random number per file and always reporting as comment, fix for permuteData needed because of new asciitable behavior
2015-05-22 05:56:49 +00:00
fbfa55e910
adjusted to new table style and naming of output
2015-05-22 04:57:05 +00:00
f363d81de5
simplified column parsing
2015-05-21 21:54:47 +00:00
2349e6c79c
standard way of reporting
2015-05-21 16:04:19 +00:00
7af176d13f
introduced option to set microstructure starting index
2015-05-21 10:04:52 +00:00
14b921f6d5
corrected help text.
2015-05-21 00:13:50 +00:00
df5dd98576
simplified boolean dictionaries to “if else” constructs.
2015-05-21 00:13:11 +00:00
acc2cb656b
simplifications due to better functionality available through asciitable.py
...
output filename format has slightly changed: binned-X-Y_weighted-W_
2015-05-21 00:08:32 +00:00
439d778cc0
simplified column check.
...
fixed typos and improved help.
2015-05-20 23:21:35 +00:00
d70b903d1b
output follows standard way, test need to ignore header
2015-05-20 21:26:49 +00:00
056ba0f2e4
reverted back to hard-to-read but working if else statement
2015-05-20 19:40:11 +00:00
d99f13a49f
now operating on file, only on stdout if input comes from stdin
2015-05-20 19:07:52 +00:00
973f092fd9
similar to imageData but uses RGB triplet as color value instead of mapping a scalar.
...
Can only use columnar data and not 2D arrays, though.
2015-05-19 21:15:15 +00:00
ee65b269ad
simplified data column determination.
2015-05-19 21:14:19 +00:00
f7faa3eeca
finally fixed the bug in the transformation and incorporated rotation to conform to TSL convention
2015-05-18 22:28:24 +00:00
cd94469ea0
VPSC file format not used, if needed convert first to geom
2015-05-18 18:59:41 +00:00
76d456ee49
fixed rename
2015-05-18 14:48:25 +00:00
7775b254bd
updated tests to follow new addStrainTensors syntax, check in seeds_fromTable.py was wrong with simplified default
2015-05-18 08:42:14 +00:00
cddbd53789
reads better
2015-05-16 14:32:32 +00:00
03fef5fd6e
simplified option parsing
2015-05-15 13:49:16 +00:00
e45dcb7948
more readable if-else oneliner
2015-05-15 13:38:27 +00:00
6a38b4396f
simplified help
2015-05-15 13:34:52 +00:00
a3bed5cc42
short options conflicting with typical use
2015-05-15 10:33:32 +00:00
a451a69c2c
corrected default type (only list for 'extend')
2015-05-14 18:48:15 +00:00
fa1368204d
fixed bug in asciitable when updating labels for readArray, fixed checking for euler angels presence in tessellation, improved help
2015-05-14 17:07:50 +00:00
7ea350b90e
corrected default for multiple arguments of fixed length (tuple, not list)
2015-05-14 10:00:56 +00:00
3e8f16c515
range parameter is now autoscaled to account for -log option, i.e. range is always given as bounds of original data
2015-05-13 13:45:26 +00:00
b0a37497a1
fixed buggy coordinate transform.
2015-05-12 15:30:00 +00:00
6a98c7efad
simplified option parsing
2015-05-11 20:12:31 +00:00
4899b3df0a
found some unused (forgotten debug) statements
2015-05-11 20:09:49 +00:00
2102fadfc7
improved help for automatic documentation
2015-05-11 19:47:52 +00:00
537c42d146
script to transform coordinate system at APS beam line 34-ID-E from X,Y,Z,F to strain x,y,z
2015-05-11 14:15:50 +00:00
eff71b418b
now working with corrected asciitable
2015-05-10 20:59:23 +00:00
6f112b46b5
can be done with TSL OIM in current versions
2015-05-10 15:56:59 +00:00
b60f868a76
renumbering asciitable when readArray for selected columns only
...
test no longer for deleteColumn
2015-05-10 11:29:11 +00:00
8bf7a7ef6a
some beautifications
2015-05-10 10:58:32 +00:00
c0a9141c8f
updated help to enable automated documentation
2015-05-10 10:56:02 +00:00
a03b1ede99
improved help for automatic documentation
2015-05-10 08:59:21 +00:00
d87b70fe49
filterTable can do the job
2015-05-09 21:33:17 +00:00
18831e0e80
improved help for automatic documentation and simplified some scripts
2015-05-09 21:32:23 +00:00
47b8605733
improved help for automatic documentation and simplified some scripts
2015-05-09 13:01:31 +00:00
59e546e3d7
improved help for automatic documentation and simplified some scripts
2015-05-09 12:45:30 +00:00
d0180540eb
fixed bugs introduced with last commit and restored capability of handling legacy seeds format
2015-05-08 05:02:44 +00:00
cb42fb9c5d
clarified help text.
2015-05-05 16:58:56 +00:00
f5ccc37125
re-write Karafillis-Boyce yield criterion, the old version is actually the generalized Karafillis-Boyce yield criterion, i.e., Born-Besson yield criterion, which has three exponents, it seems unstable. Now retreat to the original Karafillis-Boyce yield criterion (Karafillis, Boyce 1993), which has only one exponents.
2015-05-04 15:00:02 +00:00
1e6c4fa988
re-write Yld2000
2015-05-04 14:54:48 +00:00
e0e7bb7a24
fix bugs of barlat1989, barlat1991
2015-05-04 14:52:33 +00:00
ce0675f359
added options for laguerrre tessellation
2015-05-02 07:41:14 +00:00
58b3d017bd
changed option name from “invertColor” to “invert”
2015-05-01 17:58:10 +00:00
afe7225357
add the option of exporting '.ctf' format file.
2015-04-28 18:09:07 +00:00
c05df20370
throw error message when DAMASK output obviously not present in T16 file
2015-04-28 17:54:00 +00:00
f8e06b488a
make the script consistent with other scripts:
...
1. use new file handles
2. add scriptID and version
2015-04-28 17:47:06 +00:00
906c3f63a1
updated hybridIA sampling to work with new format
...
cropLinearODF is not working for the new format, but filterTable should be able to do the task
2015-04-27 05:30:29 +00:00
1b9595d012
1. add the option 'all', fit all criteria automatically
...
2. generate equivalent stress automatically for advanced criteria.
2015-04-25 17:08:38 +00:00
a55b0c54c6
change the unit of stress
2015-04-25 16:22:32 +00:00
edb559d2fa
1. Judge the validity of stress points, and skip the invalid stress points.
...
2. change the defaulted unit
2015-04-25 16:19:06 +00:00
895421e677
changed from core module fftw to fftwpack from latex, tolerances need to be less strict
2015-04-24 08:07:13 +00:00
b9c5edf7ab
changed to standard file and output handling
2015-04-22 18:57:44 +00:00
2e6bbe887e
changed header in seeds file from 'x,y,z' to '1..3_coords'.
...
scripts now use the header information and do not rely on coordinates being in the first three columns
2015-04-22 18:44:54 +00:00
0cec85ac63
corrected order of output, config file output is not supported yet
2015-04-21 19:37:03 +00:00
46c33b0d98
polishing
2015-04-21 18:55:10 +00:00
4581e22a0f
change reading in to standard loop over files
...
getting bins now from header information
format of linearODF now standard ASCII table style with header/keyword/label
2015-04-20 14:22:45 +00:00
f43afa13d8
simple script to generate geom file from stacked tiff images.
2015-04-20 12:57:45 +00:00
f5762209dc
changed 'range' keyword to 'limit', now using proper ASCII table (with column 'intensity') for linearODF
...
hybridIO_linODFsampling simplified
2015-04-15 14:37:46 +00:00
64764b0902
introduced moving of multiple seeds at the same time
...
introduced more suitable check for convergence of the first bin. Improvements in bringing seeds with a size outside the range of the target closer are no longer invisible
2015-04-14 12:42:35 +00:00
790aa32b1b
fixed string to character splitting of weight column label
2015-04-13 20:24:03 +00:00
4bcc80911e
changed grid to float from (wrong) integer type.
...
row and column probability density normalization now takes place BEFORE limiting data range.
2015-04-13 19:55:28 +00:00
d008b566b4
ensure to bring all seeds within target range
2015-04-10 20:47:20 +00:00
9d3cd8f997
added options do define number of maximum seeds to move simulateneously
2015-04-10 18:08:17 +00:00
4aa63e1ab9
handling of seeds files without microstructure (but eulerangles)
2015-04-10 16:59:08 +00:00
09bfd1e18e
more verbose error handling for euler angles limits
...
ensuring that ROUNDED euler angles are not above the limits
2015-04-10 14:50:23 +00:00
e01e270300
improved search for double microstructures (was N^2 bogosort) in geom_fromAng and introduced it in geom_fromVPSC
2015-04-10 12:57:25 +00:00
5257a2161f
added options for x and y normalization
2015-04-09 06:45:21 +00:00
57a2c90d30
corrected according to vtk specification and remove an unused option
2015-04-08 18:48:35 +00:00
976647b9e4
add the convergence criterion, the method is :
...
1. calculate the L2 norm of the residual of all the stress points
2. store the relative errors of the L2 norm
3. if the standard deviation of the relative errors of last five fittings is less than 0.05, that it is considered that the relative errors is stabilized, so the fitting is finished.
2015-04-08 17:48:26 +00:00
b77768fd4d
all the criteria support plane stress
2015-04-08 16:24:20 +00:00
0544706c7b
corrected help for legacy format
2015-04-08 12:51:40 +00:00
6e650a42b4
some comments for discussion
2015-04-07 07:42:46 +00:00
ab89c84ec8
Correct the message of last change
...
1. rename BBC2003 as BBC2000;
2. add the real BBC2003 yield criterion, BBC2003 works;
3. now the BBC family yield criteria include: BBC2000, BBC2003, BBC2005
2015-04-03 21:01:37 +00:00
412028f33f
1. rename BBC2003 as BBC2000;
...
2. add the real BBC2003 yield criterion, BBC2003 works;
3. now the BBC family yield criteria include: BBC2000, BBC2003, BBC2008
2015-04-03 20:59:23 +00:00
cd2a744db9
add Yld2000 yield criterion, Yld2000 works
2015-04-03 16:20:03 +00:00
2b9964bba5
add Barlat-Lian 1989 yield criterion, Barlat1989 works.
2015-04-03 12:31:13 +00:00
0097d39873
fix some type errors; add more comments
2015-04-02 19:32:48 +00:00
86f39de462
remove non-utf symbol
2015-04-02 16:13:00 +00:00
d8a99b23bf
1.compact all the criteria into a single Class;
...
2.the first thorough check of the script;
3.add the option of exponents for all non-quadratic yield criteria, now the user 1)can specify the exponent, for example, m=6 for Barlat 1991, or 2)see the exponent as an undetermined parameters;
4.add the pre-specified bounds for all criteria;
5.add the user defined equivalent stress for some anisotropic yield criteria
2015-04-02 12:08:55 +00:00
92a67e1a9d
geom_fromAng.py crashed when found empty line (eg. at the end of the file), now fixed
2015-04-01 14:42:25 +00:00
a1956436be
fixed bug introduced last time when searching for keywords in spectralOut header
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made reading in of header more robust by explicitly using the information given by fortran specifies the data length
introduced a legacy mode again, now it is used to read old spectralOut files prior to rev 4017
2015-04-01 10:02:21 +00:00
38943c1e94
improved help
2015-03-29 15:37:40 +00:00
913c5347a5
removed handling for old legacy format (we might introduce a new one)
2015-03-29 09:08:42 +00:00
66d4ff097f
removed obsolete comment
2015-03-28 11:44:17 +00:00
72c2ead277
polishing, replace variables calculation with arrays calculation.
2015-03-27 17:58:49 +00:00
8a30021202
cleaned up core modul
2015-03-27 14:10:18 +00:00
004375cc79
removed table rewind causing problem with STDIN/STDOUT
2015-03-27 13:57:34 +00:00
1ee81e74ea
more patches to get the tests running again:
...
- fixed increment counting in postResults to current output scheme
- corrected node coordinates calculation
- some work on restart (restart test still not running)
2015-03-26 21:19:28 +00:00
69b8e02a3a
removed unwanted ASCII table data rewind causing problem for STDIN
2015-03-26 21:15:59 +00:00
643f7fe934
some comments
2015-03-26 05:04:12 +00:00
fe4373a9f9
updated post processing script for MPI IO spectralOut file
2015-03-25 16:09:56 +00:00
1a3bfc7d1f
updated according to new convention for ip and nodes
2015-03-24 13:52:40 +00:00
226381586c
compact the code of Yld2004-18p and Karafillis-Boyce, use array instead of components to calculate the partial derivative.
2015-03-16 16:42:26 +00:00
12cb5e56fe
fixed interpretation 'spectralOut' header. Seem to have been buggy all the time, but manifested itself only after keyword change. Also added ':' after keywords to be more robust
2015-03-15 15:29:38 +00:00
df2ee87a7c
corrected help
2015-03-13 14:47:22 +00:00
c4f639dbfb
prevent crash in option parsing
2015-03-13 14:46:40 +00:00
a048b2ec15
1. Implement bbc2005 yield criterion (the residum and Jacobian); 2. bbc2005 works
2015-03-13 10:07:23 +00:00
56cf1b53eb
add Fourier interplation, anisotropic Vegter yield criterion is okay
2015-03-13 08:50:47 +00:00
4b19b74d11
number of intervals is limit/delta not limit/delta -1
2015-03-13 08:39:55 +00:00
def6d6b878
re-introduced determination of elem column
2015-03-12 06:20:40 +00:00
3f340ffac9
fixed bug for table data without labels in header
2015-03-11 20:39:14 +00:00
de29524189
add Vegter criteria, planar isotropy works
2015-03-11 17:42:46 +00:00
72efc7b30c
renamed resolution -> grid, dimension -> size
2015-03-11 08:55:48 +00:00
0dde6539ed
renamed from 1_ip to 1_ipinitialcoord
2015-03-11 07:22:11 +00:00
eb1561b528
changed postprocessing to use 1_ip instead of ip.x etc, plus corrected test files headers
2015-03-10 21:15:05 +00:00
a62fa5d5dd
rewrite class Loadcase
...
1. add 2 dimension random load case generator
2. add Vegter load case generator(typical stress points in 2D)
2015-03-09 21:57:22 +00:00
271c9eed8b
use 1_ip instead of ip.x
...
Old format still as fallback option to support legacy files
2015-03-09 12:52:43 +00:00
4d587b1bf9
introduced 'alias' for ip.x by first searching for 1_ip
2015-03-09 11:32:16 +00:00
96a3cb0667
added some ideas regarding the incorporation of the vegter yield criterion
2015-03-09 11:24:06 +00:00
639b030c65
shortened code for opening input file list
2015-03-06 17:04:44 +00:00
37e40fdf79
Keep consistent with the new file: example.linearODF
2015-03-06 16:21:05 +00:00
654aacf207
removed invalid options (options.packing, options.shift)
2015-03-05 21:41:53 +00:00
5d9abc16e8
the number of grains starts with one.
2015-03-05 20:16:17 +00:00
aeb468254d
missing file.close()
2015-03-05 19:12:07 +00:00
4579a696e8
use OptionParse to parse the command-line options, add help information,
...
add the output of material.config file.
2015-03-05 19:01:31 +00:00
d188f35c17
use OptionParse to parse the command-line options, add help information, format the header of output file, now the output file can be used by hydribIA_linODFsampling.py directly
2015-03-05 17:04:16 +00:00
f1df6cf40f
copied some stcopied some scripts from the Code folder that are of interest for DAMASK
2015-03-05 10:05:00 +00:00
8c91d174fa
remove some debugging print;
...
add meshgrid2, but stick with list comprehension since it is actually faster.
2015-03-02 16:20:47 +00:00
0077177c05
some polishing (numpy —> np, theTable —> table)
2015-03-02 05:06:29 +00:00
0d7355a49f
correct help information.
2015-02-27 23:08:48 +00:00
1742725963
interpolate microstructure using Delaunay triangulation and Barycentric interpolation.
2015-02-27 22:59:09 +00:00
9203b37fbc
1. Implement Hill1979 yield criterion (the residum and Jacobian);
...
2. Hill1979 works
2015-02-25 17:24:33 +00:00
8b1846e78e
1. Implement Karafillis-Boyce yield criterion (the residum and Jacobian);
...
2. Karafillis-Boyce works
2015-02-24 16:46:09 +00:00
39e17fc95a
1. add __init__() for the "Class" of each Criterion;
...
2. Polishing
2015-02-20 20:51:23 +00:00
a3e5da0bfd
1. Implement 2D and 3D Cazacu-Barlat yield criteria(the residum and Jacobian);
...
2. Both work
2015-02-20 20:34:47 +00:00
09c357c70f
1. Fix bug of Yld2004-18p;
...
2. get deformation rate tensor and Lankford coefficient.
2015-02-20 14:40:24 +00:00
425251ae2b
fixed bug: theTable -> table
2015-02-14 11:23:50 +00:00
4a63aff1ed
1. Implement Yld2004-18p yield criterion(the residum and Jacobian);
...
2. Yld2004-18p yield criterion takes effect
2015-02-13 17:22:19 +00:00
77cffd8040
1. fix up Banabic-Balan-Comsa 2003 (BBC2003) yield criterion;
...
2. add the calculation Jacobian of BBC2003;
3. Now BBC2003 yield criterion takes effect
2015-02-12 20:48:03 +00:00
69af205721
add the calculation of Jacobian of isotropic and anisotropic Barlat1991, shows better performance.
2015-02-12 11:04:00 +00:00
40f1f3af23
add the calculation of Jacobian of Hill1948 and Drucker family criteria.
2015-02-11 19:06:23 +00:00
53b40662ec
now with executable, correct line endings, and ID tags.
2015-02-11 17:26:56 +00:00
d5f9f543ca
Script to generate PNG image from given column (or 2D data in overall ASCIItable) with custom colormap and pixel sizes.
...
Supersedes “imageFromData” from “Code” repository.
2015-02-11 17:25:49 +00:00
9eae665365
fixed ‘too many files open’ issue when processing a large list of input tables.
2015-02-11 17:22:47 +00:00
eed00007f9
Re-write the script:
...
1. replace curve_fit with leastsq, which supports the analytical Jacobian
2. specify a "class" (contains both residum and jacobian) for each criterion.
3. add the calculation of Jacobian
2015-02-11 16:49:40 +00:00
1b1ed3bbcf
removed unnecessary lines
2015-02-11 06:18:08 +00:00
40a792d785
fixed bug in consistency check
2015-02-10 13:49:47 +00:00
63434c2ddb
corrected error checking for correct type
2015-02-09 08:57:14 +00:00
7edd209ce4
corrected wrong name in add..., more verbose error checking for geom_from...
2015-02-07 22:22:28 +00:00
6140285ddd
small changes (use ip.x instead of 1_ip). Probably we should modify postResults to use the 1_, 2_, 3_, standard notation for ip as well
2015-02-07 18:13:51 +00:00
e4a94aa72b
put changes on algorithm from geom_fromEuclideanDistance into addEuclideanDistance
2015-02-07 17:11:46 +00:00
f3bab46275
addthe Cazacu–Barlat (CZ) yield criterion (3D and 2D), Banabic–Balan–Comsa (BBC) Yield Criterion.
2015-02-07 16:58:57 +00:00
cdb7795956
1. Add default boundary constraint(no constraint) and initial guess to the dictionary
...
2. With the boundary constraint of exponential term, now non-quadratic yield criteria (isotropic Barlat 1991, anisotropic Barlar 1991, Hosford) take effect.
2015-02-07 11:07:45 +00:00
0350b1829c
1. Replace curve_fit(see minpack.py) with curve_fit_bound(see damask/util.py), now the boundary constraint can be applied.
...
2. Transfer the output information into dictionary 'fittingCriteria', compact subroutine 'fit'.
2015-02-06 14:01:04 +00:00
ce09e992cc
1. Change yieldStress from 'list' to 'numpy.arrary', thanks to Martin's suggestion (3907);
...
2. Change '3*3' Cauchy stress tensor to '1*6', now the number of input 'xdata' for fitting is 6*Points, which is less than the former 9*Points.
2015-02-06 13:48:14 +00:00
0b3205a24b
some suggestions how to simplify
2015-02-06 09:29:21 +00:00
4f2c07063b
Fix general Hosford!
2015-02-05 20:18:07 +00:00
2b704b3905
Fix: Tresca, von Mises, Drucker, Hill 1948 criteria.
2015-02-04 16:47:35 +00:00
2d568b49f2
add the output of standard deviation errors;
...
fix Hill 48 and anisotropic Barlat 1991
2015-02-04 13:04:34 +00:00
3845c47e61
complement of 3897: add isotropic and anisotropic Barlat 1991 to the dictionary
2015-02-03 12:57:18 +00:00
bef846d294
add isotropic and anisotropic Barlat1991 yield criteria.
2015-02-03 12:54:16 +00:00
55445af9bc
1. add initial guess and weight to the fitting (nonlinear least square regression);
...
2. extend the dictionary:fittingCriteria
2015-02-03 12:18:53 +00:00
cc6138ec41
rewrite "def fit()";
...
add format output.
2015-02-02 17:41:19 +00:00
fd75772a3f
Fix the bug of calculating principal stresses. Now the fitting result is better for the criteria which expressed in principal stresses.
...
Thanks to Martin.
2015-02-02 16:52:28 +00:00
4772efbc45
fixed syntax error
2015-01-23 10:11:12 +00:00
2c9c04eb76
added script to replace all rows of an ASCII table by a single row containing their average
2015-01-23 00:57:10 +00:00
5be9a75cff
fixed indentation
2015-01-22 09:04:01 +00:00
440263f2f0
simplified, removed deprecated synonyms
2015-01-22 09:03:18 +00:00
ed6b4fe50a
fixed issues when having grains and eulers
2015-01-13 16:04:49 +00:00
c08f704dee
added Id + a little help
2015-01-07 19:29:27 +00:00
ca58216134
added missing math module import
2015-01-05 12:25:03 +00:00
3e3c13bf0b
added missing math module import
2015-01-04 21:02:17 +00:00
8dea16c07f
fixed wrong assignment of phase and made orientation comparison robust
2014-12-20 12:42:21 +00:00
5e8fff13d9
worked on the vtk binary out, still some problems with multicomponent datatypes
2014-12-18 21:46:38 +00:00
6604d0f8e8
polishing
2014-12-18 19:26:52 +00:00
9ac62e42df
added possibility to specify number of bins to be sorted in advance to current cleared stage
2014-12-18 18:03:36 +00:00
89f8ba979e
Add x,y coordinates of stereographic projection of given direction (pole) in crystal frame.
2014-12-13 00:12:55 +00:00
f8ce57abc8
removed aliases 'resolution' and 'dimension' for 'grid' and 'size' because some scripts did not have it anyway and the rename happened quite a while ago
2014-12-08 08:48:55 +00:00
c067d0dc69
fixed wrong periodicity treatment
2014-12-05 10:35:56 +00:00
30920801aa
extended for 2D, finds the bounding edges and assigns them 'physical' attribute.
2014-12-04 11:33:06 +00:00
47685ac7c4
added output of script ID do material.config
2014-12-03 10:09:47 +00:00
590106b889
added possibility to add randomly distributed second phase (index = indexGiven+1)
2014-12-02 22:22:11 +00:00
Aritra Chakraborty