removed warnings by pyflakes, implemented new croak functionality
This commit is contained in:
Martin Diehl
parent
e1157126bc
commit
f4c53e0be8
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@ -63,7 +63,7 @@ for name in filenames:
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table = damask.ASCIItable(name = name, outname = os.path.splitext(name)[0] +'%s'%('_material.config' if options.config else '.geom'),
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buffered = False, labeled = False, readonly=True)
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except: continue
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table.croak(damask.util.emph(scriptName)+(': '+name if name else ''))
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damask.util.report(scriptName,name)
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info = {
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'grid': np.ones(3,'i'),
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@ -86,7 +86,7 @@ for name in filenames:
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if words[0] == '#': # process initial comments/header block
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if len(words) > 2:
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if words[2].lower() == 'hexgrid':
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table.croak('The file has HexGrid format. Please first convert to SquareGrid...\n')
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damask.util.croak('The file has HexGrid format. Please first convert to SquareGrid...\n')
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break
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else:
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currPos = words[3:5]
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@ -110,10 +110,10 @@ for name in filenames:
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limits = [360,180,360]
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if any([np.any(eulerangles[:,i]>=limits[i]) for i in [0,1,2]]):
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table.croak('Error: euler angles out of bound. Ang file might contain unidexed poins.\n')
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damask.util.croak('Error: euler angles out of bound. Ang file might contain unidexed poins.\n')
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for i,angle in enumerate(['phi1','PHI','phi2']):
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for n in np.nditer(np.where(eulerangles[:,i]>=limits[i]),['zerosize_ok']):
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table.croak('%s in line %i (%4.2f %4.2f %4.2f)\n'
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damask.util.croak('%s in line %i (%4.2f %4.2f %4.2f)\n'
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%(angle,n,eulerangles[n,0],eulerangles[n,1],eulerangles[n,2]))
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continue
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eulerangles=np.around(eulerangles,int(options.precision)) # round to desired precision
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@ -154,17 +154,17 @@ for name in filenames:
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info['microstructures'] = len(microstructure)
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#--- report ---------------------------------------------------------------------------------------
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table.croak('grid a b c: %s\n'%(' x '.join(map(str,info['grid']))) +
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damask.util.croak('grid a b c: %s\n'%(' x '.join(map(str,info['grid']))) +
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'size x y z: %s\n'%(' x '.join(map(str,info['size']))) +
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'origin x y z: %s\n'%(' : '.join(map(str,info['origin']))) +
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'homogenization: %i\n'%info['homogenization'] +
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'microstructures: %i\n\n'%info['microstructures'])
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if np.any(info['grid'] < 1):
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table.croak('invalid grid a b c.\n')
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damask.util.croak('invalid grid a b c.\n')
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continue
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if np.any(info['size'] <= 0.0):
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table.croak('invalid size x y z.\n')
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damask.util.croak('invalid size x y z.\n')
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continue
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@ -1,7 +1,7 @@
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#!/usr/bin/env python
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# -*- coding: UTF-8 no BOM -*-
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import os,sys,string,re,math,itertools
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import os,sys,string,math,itertools
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import numpy as np
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from scipy import ndimage
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from optparse import OptionParser
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@ -132,14 +132,14 @@ for name in filenames:
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table = damask.ASCIItable(name = name,
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buffered = False, labeled = False, readonly = True)
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except: continue
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table.croak('\033[1m'+scriptName+'\033[0m'+(': '+name if name else ''))
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damask.util.report(scriptName,name)
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# --- interpret header ----------------------------------------------------------------------------
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table.head_read()
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info,extra_header = table.head_getGeom()
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table.croak(['grid a b c: %s'%(' x '.join(map(str,info['grid']))),
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damask.util.croak(['grid a b c: %s'%(' x '.join(map(str,info['grid']))),
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'size x y z: %s'%(' x '.join(map(str,info['size']))),
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'origin x y z: %s'%(' : '.join(map(str,info['origin']))),
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'homogenization: %i'%info['homogenization'],
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@ -150,7 +150,7 @@ for name in filenames:
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if np.any(info['grid'] < 1): errors.append('invalid grid a b c.')
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if np.any(info['size'] <= 0.0): errors.append('invalid size x y z.')
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if errors != []:
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table.croak(errors)
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damask.util.croak(errors)
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table.close(dismiss = True)
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continue
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@ -187,7 +187,7 @@ for name in filenames:
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buffered = False, labeled = False)
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except: continue
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table.croak(features[feature]['alias'][0])
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damask.util.croak(features[feature]['alias'][0])
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distance = np.where(uniques >= features[feature]['aliens'],0.0,1.0) # seed with 0.0 when enough unique neighbor IDs are present
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distance = ndimage.morphology.distance_transform_edt(distance)*[options.scale]*3
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@ -80,7 +80,7 @@ for name in filenames:
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table = damask.ASCIItable(outname = name,
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buffered = False, labeled = False)
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except: continue
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table.croak('\033[1m'+scriptName+'\033[0m'+(': '+name if name else ''))
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damask.util.report(scriptName,name)
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# ------------------------------------------ make grid -------------------------------------
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@ -95,7 +95,7 @@ for name in filenames:
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#--- report ---------------------------------------------------------------------------------------
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table.croak(['grid a b c: %s'%(' x '.join(map(str,info['grid']))),
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damask.util.croak(['grid a b c: %s'%(' x '.join(map(str,info['grid']))),
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'size x y z: %s'%(' x '.join(map(str,info['size']))),
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'origin x y z: %s'%(' : '.join(map(str,info['origin']))),
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'homogenization: %i'%info['homogenization'],
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@ -106,7 +106,7 @@ for name in filenames:
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if np.any(info['grid'] < 1): errors.append('invalid grid a b c.')
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if np.any(info['size'] <= 0.0): errors.append('invalid size x y z.')
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if errors != []:
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table.croak(errors)
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damask.util.croak(errors)
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table.close(dismiss = True)
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continue
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@ -1,7 +1,7 @@
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#!/usr/bin/env python
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# -*- coding: UTF-8 no BOM -*-
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import os,sys,re,string,math
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import os,sys,string,math
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import scipy.spatial, numpy as np
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from optparse import OptionParser
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import damask
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@ -119,10 +119,10 @@ if filenames == []: filenames = [None]
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for name in filenames:
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try:
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table = damask.ASCIItable(name = name,
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outname = os.path.splitext(name)[0]+'.geom' if name else name,
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outname = os.path.splitext(name)[-2]+'.geom' if name else name,
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buffered = False)
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except: continue
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table.croak(damask.util.emph(scriptName)+(': '+name if name else ''))
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damask.util.report(scriptName,name)
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# ------------------------------------------ read head ---------------------------------------
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@ -141,7 +141,7 @@ for name in filenames:
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errors.append('phase column {} is not scalar.'.format(options.phase))
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if errors != []:
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table.croak(errors)
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damask.util.croak(errors)
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table.close(dismiss = True)
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continue
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@ -173,7 +173,7 @@ for name in filenames:
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errors.append('regular grid spacing {} violated.'.format(' x '.join(map(repr,delta))))
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if errors != []:
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table.croak(errors)
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damask.util.croak(errors)
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table.close(dismiss = True)
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continue
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@ -198,7 +198,7 @@ for name in filenames:
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for z in xrange(grid[2]):
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for y in xrange(grid[1]):
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for x in xrange(grid[0]):
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if (myRank+1)%(N/100.) < 1: table.croak('.',False)
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if (myRank+1)%(N/100.) < 1: damask.util.croak('.',False)
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myData = table.data[index[myRank]]
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mySym = options.symmetry[min(int(myData[colPhase]),len(options.symmetry))-1] # select symmetry from option (take last specified option for all with higher index)
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if inputtype == 'eulers':
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@ -236,7 +236,7 @@ for name in filenames:
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myRank += 1
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table.croak('')
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damask.util.croak('')
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# --- generate header ----------------------------------------------------------------------------
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@ -248,7 +248,7 @@ for name in filenames:
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'homogenization': options.homogenization,
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}
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table.croak(['grid a b c: %s'%(' x '.join(map(str,info['grid']))),
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damask.util.croak(['grid a b c: %s'%(' x '.join(map(str,info['grid']))),
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'size x y z: %s'%(' x '.join(map(str,info['size']))),
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'origin x y z: %s'%(' : '.join(map(str,info['origin']))),
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'homogenization: %i'%info['homogenization'],
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@ -27,8 +27,6 @@ parser.add_option('--phase', dest='phase', type='int', nargs = 2, metavar = 'int
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help='phase indices for <microstructure> configuration %default')
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parser.add_option('--crystallite', dest='crystallite', type='int', metavar = 'int',
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help='crystallite index for <microstructure> configuration [%default]')
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parser.add_option('-c', '--configuration', dest='config', action='store_true',
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help='output material configuration [%default]')
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parser.add_option('--compress', dest='compress', action='store_true',
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help='lump identical microstructure and texture information [%default]')
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parser.add_option('-p', '--precision', dest='precision', choices=['0','1','2','3'], metavar = 'int',
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@ -45,27 +43,16 @@ parser.set_defaults(precision = '2')
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(options,filenames) = parser.parse_args()
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#--- setup file handles ---------------------------------------------------------------------------
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files = []
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if filenames == []:
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files.append({'name':'STDIN',
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'input':sys.stdin,
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'output':sys.stdout,
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'croak':sys.stderr,
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})
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else:
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for name in filenames:
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if os.path.exists(name):
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files.append({'name':name,
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'input':open(name),
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'output':open(name+'_tmp','w'),
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'croak':sys.stdout,
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})
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if filenames == []: filenames = [None]
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#--- loop over input files ------------------------------------------------------------------------
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for file in files:
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file['croak'].write('\033[1m' + scriptName + '\033[0m: ' + (file['name'] if file['name'] != 'STDIN' else '') + '\n')
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for name in filenames:
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try:
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table = damask.ASCIItable(name = name,
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outname = os.path.splitext(name)[-2]+'.geom' if name else name,
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buffered = False,
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labeled = False)
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except: continue
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damask.util.report(scriptName,name)
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info = {
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'grid': np.zeros(3,'i'),
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@ -81,19 +68,20 @@ for file in files:
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phase = []
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eulerangles = []
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# --------------- read data -----------------------------------------------------------------------
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for line in file['input']:
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if line.strip():
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words = line.split()
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currPos = words[3:6]
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outputAlive = True
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# ------------------------------------------ process data ------------------------------------------
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while outputAlive and table.data_read():
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if table.data != []:
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currPos = table.data[3:6]
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for i in xrange(3):
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coords[i][currPos[i]] = True
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currPos = map(float,currPos)
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for i in xrange(3):
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pos['min'][i] = min(pos['min'][i],currPos[i])
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pos['max'][i] = max(pos['max'][i],currPos[i])
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eulerangles.append(map(math.degrees,map(float,words[:3])))
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phase.append(options.phase[int(float(words[options.column-1]) > options.threshold)])
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eulerangles.append(map(math.degrees,map(float,table.data[:3])))
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phase.append(options.phase[int(float(table.data[options.column-1]) > options.threshold)])
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# --------------- determine size and grid ---------------------------------------------------------
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info['grid'] = np.array(map(len,coords),'i')
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@ -130,60 +118,62 @@ for file in files:
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texture = np.arange(info['grid'].prod())
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microstructure = np.hstack( zip(texture,phase) ).reshape(info['grid'].prod(),2) # create texture/phase pairs
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formatOut = 1+int(math.log10(len(texture)))
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textureOut =['\n\n<texture>']
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config_header = []
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formatwidth = 1+int(math.log10(len(microstructure)))
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config_header += ['<microstructure>']
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for i in xrange(len(microstructure)):
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config_header += ['[Grain%s]'%str(i+1).zfill(formatwidth),
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'crystallite\t%i'%options.crystallite,
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'(constituent)\tphase %i\ttexture %i\tfraction 1.0'%(microstructure[i,1],microstructure[i,0]+1)
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]
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config_header += ['<texture>']
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eulerFormatOut='%%%i.%if'%(int(options.precision)+4,int(options.precision))
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outStringAngles='(gauss) phi1 '+eulerFormatOut+' Phi '+eulerFormatOut+' phi2 '+eulerFormatOut+' scatter 0.0 fraction 1.0\n'
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outStringAngles='(gauss) phi1 '+eulerFormatOut+' Phi '+eulerFormatOut+' phi2 '+eulerFormatOut+' scatter 0.0 fraction 1.0'
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for i in xrange(len(texture)):
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textureOut += ['[Texture%s]\n'%str(i+1).zfill(formatOut) +
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config_header += ['[Texture%s]'%str(i+1).zfill(formatOut),
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outStringAngles%tuple(eulerangles[texture[i],...])
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]
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formatOut = 1+int(math.log10(len(microstructure)))
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microstructureOut =['<microstructure>']
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for i in xrange(len(microstructure)):
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microstructureOut += ['[Grain%s]\n'%str(i+1).zfill(formatOut) +
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'crystallite\t%i\n'%options.crystallite +
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'(constituent)\tphase %i\ttexture %i\tfraction 1.0\n'%(microstructure[i,1],microstructure[i,0]+1)
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]
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]
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table.labels_clear()
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table.info_clear()
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info['microstructures'] = len(microstructure)
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#--- report ---------------------------------------------------------------------------------------
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file['croak'].write('grid a b c: %s\n'%(' x '.join(map(str,info['grid']))) +
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'size x y z: %s\n'%(' x '.join(map(str,info['size']))) +
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'origin x y z: %s\n'%(' : '.join(map(str,info['origin']))) +
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'homogenization: %i\n'%info['homogenization'] +
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'microstructures: %i\n\n'%info['microstructures'])
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damask.util.croak('grid a b c: %s\n'%(' x '.join(map(str,info['grid']))) +
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'size x y z: %s\n'%(' x '.join(map(str,info['size']))) +
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'origin x y z: %s\n'%(' : '.join(map(str,info['origin']))) +
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'homogenization: %i\n'%info['homogenization'] +
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'microstructures: %i\n\n'%info['microstructures'])
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if np.any(info['grid'] < 1):
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file['croak'].write('invalid grid a b c.\n')
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damask.util.croak('invalid grid a b c.\n')
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continue
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if np.any(info['size'] <= 0.0):
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file['croak'].write('invalid size x y z.\n')
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damask.util.croak('invalid size x y z.\n')
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continue
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#--- write data -----------------------------------------------------------------------------------
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if options.config:
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file['output'].write('\n'.join(microstructureOut+ textureOut) + '\n')
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table.info_append([' '.join([scriptID] + sys.argv[1:]),
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"grid\ta %i\tb %i\tc %i"%(info['grid'][0],info['grid'][1],info['grid'][2],),
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"size\tx %f\ty %f\tz %f"%(info['size'][0],info['size'][1],info['size'][2],),
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"origin\tx %f\ty %f\tz %f"%(info['origin'][0],info['origin'][1],info['origin'][2],),
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"microstructures\t%i"%info['microstructures'],
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"homogenization\t%i"%info['homogenization'],
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config_header
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])
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table.head_write()
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if options.compress:
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table.data = matPoints.reshape(info['grid'][1]*info['grid'][2],info['grid'][0])
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table.data_writeArray('%%%ii'%(formatwidth),delimiter=' ')
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else:
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header = [' '.join([scriptID] + sys.argv[1:]),
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"grid\ta %i\tb %i\tc %i"%(info['grid'][0],info['grid'][1],info['grid'][2],),
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"size\tx %f\ty %f\tz %f"%(info['size'][0],info['size'][1],info['size'][2],),
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"origin\tx %f\ty %f\tz %f"%(info['origin'][0],info['origin'][1],info['origin'][2],),
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"microstructures\t%i"%info['microstructures'],
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"homogenization\t%i"%info['homogenization'],
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]
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file['output'].write('\n'.join(['%i\theader'%(len(header))] + header) + '\n')
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if options.compress:
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matPoints = matPoints.reshape([info['grid'][1]*info['grid'][2],info['grid'][0]])
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np.savetxt(file['output'],matPoints,fmt='%0'+str(1+int(math.log10(np.amax(matPoints))))+'d')
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else:
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file['output'].write("1 to %i\n"%(info['microstructures']))
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table.data = ["1 to %i\n"%(info['microstructures'])]
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#--- output finalization --------------------------------------------------------------------------
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if file['name'] != 'STDIN':
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file['output'].close()
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os.rename(file['name']+'_tmp',
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os.path.splitext(file['name'])[0] +'%s'%('_material.config' if options.config else '.geom'))
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# ------------------------------------------ output finalization -----------------------------------
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table.close()
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@ -1,7 +1,7 @@
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#!/usr/bin/env python
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# -*- coding: UTF-8 no BOM -*-
|
||||
|
||||
import os,re,sys,math,string
|
||||
import os,sys,math,string
|
||||
import numpy as np
|
||||
import multiprocessing
|
||||
from optparse import OptionParser
|
||||
|
|
@ -75,9 +75,10 @@ def laguerreTessellation(undeformed, coords, weights, grains, nonperiodic = Fals
|
|||
]).astype(float)
|
||||
|
||||
squaredweights = np.power(np.tile(weights,len(copies)),2) # Laguerre weights (squared, size N*n)
|
||||
|
||||
|
||||
for i,vec in enumerate(copies): # periodic copies of seed points (size N*n)
|
||||
seeds = np.append(seeds, coords+vec, axis=0) if i > 0 else coords+vec
|
||||
try: seeds = np.append(seeds, coords+vec, axis=0)
|
||||
except NameError: seeds = coords+vec
|
||||
|
||||
arguments = [[arg] + [seeds,squaredweights] for arg in list(undeformed)]
|
||||
|
||||
|
|
@ -196,10 +197,10 @@ if filenames == []: filenames = [None]
|
|||
for name in filenames:
|
||||
try:
|
||||
table = damask.ASCIItable(name = name,
|
||||
outname = os.path.splitext(name)[0]+'.geom' if name else name,
|
||||
outname = os.path.splitext(name)[-2]+'.geom' if name else name,
|
||||
buffered = False)
|
||||
except: continue
|
||||
table.croak('\033[1m'+scriptName+'\033[0m'+(': '+name if name else ''))
|
||||
damask.util.report(scriptName,name)
|
||||
|
||||
# --- read header ----------------------------------------------------------------------------
|
||||
|
||||
|
|
@ -242,9 +243,9 @@ for name in filenames:
|
|||
if options.laguerre and not hasWeights: remarks.append('missing seed weights...')
|
||||
else: labels += [options.weight]
|
||||
|
||||
if remarks != []: table.croak(remarks)
|
||||
if remarks != []: damask.util.croak(remarks)
|
||||
if errors != []:
|
||||
table.croak(errors)
|
||||
damask.util.croak(errors)
|
||||
table.close(dismiss=True)
|
||||
continue
|
||||
|
||||
|
|
@ -264,10 +265,10 @@ for name in filenames:
|
|||
y = (np.arange(info['grid'][1])+0.5)*info['size'][1]/info['grid'][1]
|
||||
z = (np.arange(info['grid'][2])+0.5)*info['size'][2]/info['grid'][2]
|
||||
|
||||
table.croak('tessellating...')
|
||||
damask.util.croak('tessellating...')
|
||||
|
||||
|
||||
table.croak('...using {} cpu{}'.format(options.cpus, 's' if options.cpus > 1 else ''))
|
||||
damask.util.croak('...using {} cpu{}'.format(options.cpus, 's' if options.cpus > 1 else ''))
|
||||
grid = np.vstack(meshgrid2(x, y, z)).reshape(3,-1).T
|
||||
indices = laguerreTessellation(grid, coords, weights, grains, options.nonperiodic, options.cpus)
|
||||
|
||||
|
|
@ -278,7 +279,7 @@ for name in filenames:
|
|||
|
||||
if info['homogenization'] == 0: info['homogenization'] = options.homogenization
|
||||
|
||||
table.croak(['grid a b c: %s'%(' x '.join(map(str,info['grid']))),
|
||||
damask.util.croak(['grid a b c: %s'%(' x '.join(map(str,info['grid']))),
|
||||
'size x y z: %s'%(' x '.join(map(str,info['size']))),
|
||||
'origin x y z: %s'%(' : '.join(map(str,info['origin']))),
|
||||
'homogenization: %i'%info['homogenization'],
|
||||
|
|
|
|||
|
|
@ -1,7 +1,7 @@
|
|||
#!/usr/bin/env python
|
||||
# -*- coding: UTF-8 no BOM -*-
|
||||
|
||||
import os,sys,string,math
|
||||
import os,sys,string
|
||||
import numpy as np
|
||||
from optparse import OptionParser
|
||||
import damask
|
||||
|
|
@ -29,14 +29,14 @@ for name in filenames:
|
|||
table = damask.ASCIItable(name = name,
|
||||
buffered = False, labeled = False)
|
||||
except: continue
|
||||
table.croak('\033[1m'+scriptName+'\033[0m'+(': '+name if name else ''))
|
||||
damask.util.report(scriptName,name)
|
||||
|
||||
# --- interpret header ----------------------------------------------------------------------------
|
||||
|
||||
table.head_read()
|
||||
info,extra_header = table.head_getGeom()
|
||||
|
||||
table.croak(['grid a b c: %s'%(' x '.join(map(str,info['grid']))),
|
||||
damask.util.croak(['grid a b c: %s'%(' x '.join(map(str,info['grid']))),
|
||||
'size x y z: %s'%(' x '.join(map(str,info['size']))),
|
||||
'origin x y z: %s'%(' : '.join(map(str,info['origin']))),
|
||||
'homogenization: %i'%info['homogenization'],
|
||||
|
|
@ -47,7 +47,7 @@ for name in filenames:
|
|||
if np.any(info['grid'] < 1): errors.append('invalid grid a b c.')
|
||||
if np.any(info['size'] <= 0.0): errors.append('invalid size x y z.')
|
||||
if errors != []:
|
||||
table.croak(errors)
|
||||
damask.util.croak(errors)
|
||||
table.close(dismiss = True)
|
||||
continue
|
||||
|
||||
|
|
|
|||
|
|
@ -36,14 +36,14 @@ for name in filenames:
|
|||
table = damask.ASCIItable(name = name,
|
||||
buffered = False, labeled = False)
|
||||
except: continue
|
||||
table.croak('\033[1m'+scriptName+'\033[0m'+(': '+name if name else ''))
|
||||
damask.util.report(scriptName,name)
|
||||
|
||||
# --- interpret header ----------------------------------------------------------------------------
|
||||
|
||||
table.head_read()
|
||||
info,extra_header = table.head_getGeom()
|
||||
|
||||
table.croak(['grid a b c: %s'%(' x '.join(map(str,info['grid']))),
|
||||
damask.util.croak(['grid a b c: %s'%(' x '.join(map(str,info['grid']))),
|
||||
'size x y z: %s'%(' x '.join(map(str,info['size']))),
|
||||
'origin x y z: %s'%(' : '.join(map(str,info['origin']))),
|
||||
'homogenization: %i'%info['homogenization'],
|
||||
|
|
@ -54,7 +54,7 @@ for name in filenames:
|
|||
if np.any(info['grid'] < 1): errors.append('invalid grid a b c.')
|
||||
if np.any(info['size'] <= 0.0): errors.append('invalid size x y z.')
|
||||
if errors != []:
|
||||
table.croak(errors)
|
||||
damask.util.croak(errors)
|
||||
table.close(dismiss = True)
|
||||
continue
|
||||
|
||||
|
|
|
|||
|
|
@ -205,8 +205,8 @@ for name in filenames:
|
|||
"randomSeed\t{}".format(options.randomSeed),
|
||||
])
|
||||
table.labels_clear()
|
||||
table.labels_append( ['{dim}_{label}'.format(dim = 1+i,label = 'pos') for i in xrange(3)] +
|
||||
['{dim}_{label}'.format(dim = 1+i,label = 'eulerangles') for i in xrange(3)] +
|
||||
table.labels_append( ['{dim}_{label}'.format(dim = 1+k,label = 'pos') for k in xrange(3)] +
|
||||
['{dim}_{label}'.format(dim = 1+k,label = 'eulerangles') for k in xrange(3)] +
|
||||
['microstructure'] +
|
||||
(['weight'] if options.weights else []))
|
||||
table.head_write()
|
||||
|
|
|
|||
Loading…
Reference in New Issue