now works with recent changes of ASCIItable.
This commit is contained in:
Philip Eisenlohr
parent
636eb8a087
commit
afc88c7029
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@ -17,61 +17,48 @@ Produce a VTK point cloud dataset based on coordinates given in an ASCIItable.
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""", version = scriptID)
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parser.add_option('-p', '--positions', dest='pos', metavar='string',
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help = 'coordinate label [%default]')
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parser.set_defaults(pos = 'pos')
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parser.add_option('-p','--position',
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dest = 'position',
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type = 'string', metavar = 'string',
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help = 'column label for coordinates [%default]')
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parser.set_defaults(position = 'pos',
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)
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(options, filenames) = parser.parse_args()
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datainfo = { # list of requested labels per datatype
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'vector': {'len':3,
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'label':[]},
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}
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# --- loop over input files -------------------------------------------------------------------------
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datainfo['vector']['label'] += [options.pos]
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if filenames == []: filenames = [None]
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# ------------------------------------------ setup file handles ---------------------------------------
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files = []
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for name in filenames:
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if os.path.exists(name):
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files.append({'name':name, 'input':open(name), 'output':os.path.splitext(name)[0]+'.vtp', 'croak':sys.stderr})
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try:
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table = damask.ASCIItable(name = name,
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buffered = False, readonly = True)
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except: continue
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table.croak(damask.util.emph(scriptName)+(': '+name if name else ''))
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#--- loop over input files ------------------------------------------------------------------------
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for file in files:
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if file['name'] != 'STDIN': file['croak'].write('\033[1m'+scriptName+'\033[0m: '+file['name']+'\n')
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else: file['croak'].write('\033[1m'+scriptName+'\033[0m\n')
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# --- interpret header ----------------------------------------------------------------------------
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table = damask.ASCIItable(file['input'],file['croak'],False) # make unbuffered ASCII_table
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table.head_read() # read ASCII header info
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# --------------- figure out columns to process
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active = {}
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column = {}
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head = []
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for datatype,info in datainfo.items():
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for label in info['label']:
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foundIt = False
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for key in ['1_'+label,label]:
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if key in table.labels:
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foundIt = True
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if datatype not in active: active[datatype] = []
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if datatype not in column: column[datatype] = {}
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active[datatype].append(label)
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column[datatype][label] = table.labels.index(key) # remember columns of requested data
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if not foundIt:
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file['croak'].write('column %s not found...\n'%label)
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break
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table.head_read()
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errors = []
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remarks = []
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if table.label_dimension(options.position) != 3: errors.append('columns "{}" have dimension {}'.format(options.position,
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table.label_dimension(options.position)))
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if remarks != []: table.croak(remarks)
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if errors != []:
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table.croak(errors)
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table.close(dismiss=True)
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continue
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# ------------------------------------------ process data ---------------------------------------
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table.data_readArray(options.position)
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Polydata = vtk.vtkPolyData()
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Points = vtk.vtkPoints()
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Vertices = vtk.vtkCellArray()
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table.data_readArray(range(column['vector'][options.pos],\
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column['vector'][options.pos]+datainfo['vector']['len']))
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for p in table.data:
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id = Points.InsertNextPoint(p)
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@ -81,19 +68,29 @@ for file in files:
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Polydata.SetPoints(Points)
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Polydata.SetVerts(Vertices)
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Polydata.Modified()
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if vtk.VTK_MAJOR_VERSION <= 5:
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Polydata.Update()
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if vtk.VTK_MAJOR_VERSION <= 5: Polydata.Update()
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# ------------------------------------------ output result ---------------------------------------
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writer = vtk.vtkXMLPolyDataWriter()
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writer.SetDataModeToBinary()
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writer.SetCompressorTypeToZLib()
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writer.SetFileName(file['output'])
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if vtk.VTK_MAJOR_VERSION <= 5:
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writer.SetInput(Polydata)
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else:
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writer.SetInputData(Polydata)
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writer.Write()
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if name:
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(dir,filename) = os.path.split(name)
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writer = vtk.vtkXMLPolyDataWriter()
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writer.SetDataModeToBinary()
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writer.SetCompressorTypeToZLib()
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writer.SetFileName(os.path.join(dir,os.path.splitext(filename)[0]+'_{}'.format(options.position) \
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+'.'+writer.GetDefaultFileExtension()))
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if vtk.VTK_MAJOR_VERSION <= 5: writer.SetInput(Polydata)
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else: writer.SetInputData(Polydata)
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writer.Write()
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table.input_close() # close input ASCII table
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else:
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writer = vtk.vtkPolyDataWriter()
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writer.WriteToOutputStringOn()
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writer.SetFileTypeToASCII()
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writer.SetHeader('# powered by '+scriptID)
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if vtk.VTK_MAJOR_VERSION <= 5: writer.SetInput(Polydata)
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else: writer.SetInputData(Polydata)
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writer.Write()
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sys.stdout.write(writer.GetOutputString()[0:writer.GetOutputStringLength()])
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table.close() # close input ASCII table
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