Martin Diehl
5ebde607a2
einsum simplifications
2020-11-16 07:43:20 +01:00
Martin Diehl
9b9d83d93c
adding '_tensor' not needed
2020-11-16 01:15:39 +01:00
Martin Diehl
b893967b68
more systematic names and extended docstrings
2020-11-16 01:02:36 +01:00
Martin Diehl
6f81f5278d
separating general tensor math from mechanics operations
2020-11-16 00:13:34 +01:00
Martin Diehl
b3955573f6
using new tests
2020-11-15 22:39:47 +01:00
Martin Diehl
fd8743af5e
clearly distinguish seeds for tessellation and seeds for RNG
2020-11-15 13:49:17 +01:00
Martin Diehl
1541ac0add
more intuitive use
2020-11-15 12:38:54 +01:00
Martin Diehl
15af12bbb4
__ne__ is automatically set to !__eq__, __neq__ has no special meaning
2020-11-15 11:38:26 +01:00
Martin Diehl
51e5dda702
documentation + consistent string formatting
2020-11-15 10:54:20 +01:00
Martin Diehl
05c1007add
documentation improvments + acceptance of lists
...
example code at respective function, no space in 'or' variable names
(sphinx cannot handle this)
2020-11-15 10:31:01 +01:00
Martin Diehl
1eb9d494c7
not specific to Orientation class
2020-11-14 19:51:15 +01:00
Martin Diehl
149fce0a7e
increase test coverage
2020-11-14 19:42:52 +01:00
Martin Diehl
764aacf2a1
increasing test coverage
2020-11-14 17:54:47 +01:00
Martin Diehl
9eb4e2d0de
corrected handling of scalar/array arguments
...
+ more tests
+ corrected handling of numpy types
2020-11-14 17:26:38 +01:00
Martin Diehl
6529613726
Merge remote-tracking branch 'origin/development' into vector-mechanics
2020-11-14 15:10:52 +01:00
Philip Eisenlohr
b3e8b85d25
normalizing coordinates _before_ rotation causes wrong primitive shape for non-cubic VEs
2020-11-12 18:34:29 -05:00
Martin Diehl
e15678e7a4
consistent handling of comments
2020-11-12 21:31:09 +01:00
Martin Diehl
e90c20ccd6
Merge remote-tracking branch 'origin/geom-attributes-as-checked-properties' into development
2020-11-10 14:54:40 +01:00
Martin Diehl
5926f84851
WIP: refactoring Orientation=Symmetry+Rotation, Lattice=subclass of Sym, and Crystal=Lattice+Rotation
2020-11-09 21:20:56 +01:00
Philip Eisenlohr
f105631015
redefined attributes material,size,origin,comments as properties; enhanced help/descriptions
2020-11-08 12:11:30 -05:00
Martin Diehl
bbaeeb02da
Merge remote-tracking branch 'origin/misc-improvements' into h5py3
2020-11-06 13:19:47 +01:00
Martin Diehl
58a5d2666c
ensure correct Mises mode
2020-11-06 00:10:46 +01:00
Martin Diehl
e649fb195f
update to use variable-length strings
2020-11-05 22:34:41 +01:00
Martin Diehl
30938a8278
correct order (brackets)
2020-11-05 21:38:00 +01:00
Martin Diehl
e26bb962c8
encode from str to bytes
2020-11-05 21:19:49 +01:00
Martin Diehl
68d384bbdd
bugfix: missing rename
2020-11-05 21:14:02 +01:00
Martin Diehl
a416f5ed5b
encode/decode for h5py3 not needed anymore
...
attribute values with variable-length strings will be interpreted as
str, not bytes
2020-11-05 16:13:29 +01:00
Martin Diehl
708c83dcf1
polishing
2020-11-05 07:15:59 +01:00
Martin Diehl
1fcf9cb721
don't compute silently the wrong von Mises kind
...
and allow the user to set it explicitly
2020-11-05 05:48:12 +01:00
Martin Diehl
7341b9830a
h5py v 3.x handles strings differently
2020-11-05 05:39:45 +01:00
Martin Diehl
01af348cd9
symmetric behavior load/save
...
default name reflects fact that material.yaml has a fixed name
2020-11-04 21:14:08 +01:00
Martin Diehl
ae959b9cc2
allow '.' in filenames
2020-11-04 18:08:04 +01:00
Philip Eisenlohr
eaceb16203
added +1 to nanmax(material) as auto offset, now consistent with help and intention...
2020-11-03 17:43:57 -05:00
Sharan Roongta
11f1f4f555
Merge branch 'modernize-testing' into development
2020-11-03 12:49:19 +01:00
Philip Eisenlohr
4d4278e6dd
shortened tainted_neighborhood logic
2020-11-02 18:20:52 -05:00
Martin Diehl
cf958d32b4
Merge branch 'development' into vector-mechanics
2020-11-02 15:23:11 +01:00
Martin Diehl
be47c744d8
Merge branch 'development' into geom-sort
2020-11-02 12:26:31 +01:00
Martin Diehl
212ed62b19
pytest-based tests
...
removed unused functionality from deprecated python library modules
2020-11-02 12:07:16 +01:00
Martin Diehl
086b215d94
Merge branch 'test-new-dir' into development
2020-11-01 19:29:52 +01:00
Martin Diehl
cf18954db9
hint for future improvement
2020-11-01 19:20:52 +01:00
Martin Diehl
7059e6af6e
might not be in the last line
2020-11-01 18:34:52 +01:00
Martin Diehl
946da2379b
Merge remote-tracking branch 'origin/development' into modernize-testing
2020-11-01 10:06:52 +01:00
Martin Diehl
0a3598c338
Merge branch 'simplify-from_table' into development
2020-10-31 22:34:17 +01:00
Martin Diehl
0ebb9b611d
functionality to sort material id
...
convenient for layered materials
2020-10-31 20:46:21 +01:00
Martin Diehl
67f69fc8a5
data is consecutive
2020-10-31 17:23:58 +01:00
Martin Diehl
8224122bb9
more user friendly error handling
2020-10-31 13:16:25 +01:00
Martin Diehl
aecf2f539e
allow one homogenization
...
quite useless ...
2020-10-30 22:26:02 +01:00
Martin Diehl
c29e3650f3
don't squeeze into scalar
2020-10-30 22:24:27 +01:00
Franz Roters
392803e47d
Merge remote-tracking branch 'origin/Marc_version_names' into development
2020-10-30 17:49:18 +01:00
Philip Eisenlohr
46e5023f8b
Merge branch 'geom-improvements' into 'development'
...
Geom improvements
See merge request damask/DAMASK!264
2020-10-29 23:53:33 +01:00
Martin Diehl
b2289e80b2
simplified
2020-10-29 20:09:13 +01:00
Martin Diehl
4b700d367e
improved test
2020-10-29 17:59:44 +01:00
Vitesh Shah
904c338b13
Reflect version underscore of installation files
2020-10-29 15:21:40 +01:00
Martin Diehl
999cf53c07
tests+fixes
2020-10-29 07:42:41 +01:00
Martin Diehl
3be0c462a8
explicit is better then implicit:
...
user should sort Table according to coordinates to create geometry. This
allows to have consistent behavior for from_table in Geom and
ConfigMaterial. We always ensure to keep the order
2020-10-29 07:25:16 +01:00
Martin Diehl
1b2cd6caf6
documentation was misleading
2020-10-28 21:53:46 +01:00
Martin Diehl
4ff99a7af4
more logical layout
2020-10-28 21:51:20 +01:00
Martin Diehl
855bf124d3
faster
...
https://stackoverflow.com/questions/16992713
2020-10-28 16:53:16 +01:00
Sharan Roongta
21f095c9d8
Merge branch 'flexible-yaml-dump' into development
2020-10-28 16:19:17 +01:00
Martin Diehl
98e0ef3881
no loops
...
taken from https://stackoverflow.com/questions/3403973
2020-10-28 13:38:20 +01:00
Martin Diehl
d72343c865
keep order of unique values found in table
2020-10-28 11:56:28 +01:00
Martin Diehl
b38a498197
fast
2020-10-28 09:43:20 +01:00
Martin Diehl
5f03e8cf8f
0-based material indices
2020-10-28 09:31:55 +01:00
Martin Diehl
0804e6ee74
pythonic names
2020-10-27 13:50:47 +01:00
Martin Diehl
fa67a2ddf8
cell_coordinates is now a property
2020-10-27 13:35:14 +01:00
Martin Diehl
201a62d7c9
easier visualization if verts have a point-cell
2020-10-27 13:19:53 +01:00
Martin Diehl
4dd387d7f5
compatibility with old pyyaml + test for numpy
2020-10-27 06:39:58 +01:00
Martin Diehl
4159ae5f3d
keep order of keys
2020-10-26 21:44:38 +01:00
Martin Diehl
5834d95012
support for more types
...
- allow to directly use Config and its sublasses (cast to dict)
- convert numpy arrays
2020-10-26 21:38:24 +01:00
f.basile
802e09be4f
python/damask/_geom.py exceeds line length limit (maximum line length 143 > 132)
2020-10-26 15:11:06 +01:00
f.basile
2715e7b1a7
a bit more vectorized
2020-10-26 15:09:32 +01:00
f.basile
1cbfa866d2
get rid of scalar variables
2020-10-23 16:23:36 +02:00
Vitesh Shah
bd67296e8d
MARC_VERSION as MSCVERSION
2020-10-22 11:50:13 +02:00
f.basile
7fa31a8a1b
solving imported but unused pyflake
2020-10-19 12:55:35 +02:00
f.basile
4c22efc6ce
added show GB
2020-10-19 12:52:10 +02:00
Martin Diehl
bac7ace413
Merge remote-tracking branch 'origin/general-N_constituents' into vtr-only
2020-10-13 17:39:19 +02:00
Martin Diehl
86d91baf90
0-offset for geom
2020-10-10 10:36:15 +02:00
Martin Diehl
ffabeacbcb
removing functionality related to deprecated 'geom' format
2020-10-10 09:41:11 +02:00
Martin Diehl
06d11a72da
better fitting name
...
load implies a more direct takeover.
2020-10-09 19:19:05 +02:00
Martin Diehl
57180952ec
typo
2020-10-09 19:05:05 +02:00
Martin Diehl
347c88cbb6
documented
2020-10-09 14:24:29 +02:00
Martin Diehl
75401dd280
generate configuration from table
2020-10-09 07:45:20 +02:00
Martin Diehl
6ecaaa31c9
fairly general function to generate material configuration
2020-10-08 22:07:26 +02:00
Martin Diehl
952ad4f8fe
functionality for geom generation in python lib
2020-10-08 18:39:05 +02:00
Martin Diehl
3050471a2d
avoid circular inclusion
2020-10-08 18:05:03 +02:00
Martin Diehl
3d49678e93
new names part 2
2020-10-02 17:51:33 +02:00
Martin Diehl
a04966582a
Merge remote-tracking branch 'origin/development' into general-config
2020-10-02 14:54:16 +02:00
Martin Diehl
b29f22f513
documenting the actually available TMPS
2020-10-01 09:25:32 +02:00
Philip Eisenlohr
a59e64a8e4
renamed TPMS and added more from additional references
2020-09-30 17:28:25 -04:00
Martin Diehl
33685bc493
allow user do control output style
...
(numerics.yaml looks strange otherwise)
2020-09-30 12:32:37 +02:00
Martin Diehl
5ad46ae021
completely tested
2020-09-30 09:05:23 +02:00
Martin Diehl
fdfcb16d15
not needed
2020-09-30 08:16:12 +02:00
Martin Diehl
b383a4530e
better name, subclassing for easy extension to load
2020-09-30 07:53:25 +02:00
Martin Diehl
54e4943353
get rid of shell scripts
2020-09-30 07:11:33 +02:00
Philip Eisenlohr
350f5eb66a
improved from_ODF documentation
2020-09-29 12:55:00 -04:00
Philip Eisenlohr
31f86c28f4
[skip ci] added parameter description; shortened hybrid_IA pre-loop logic
2020-09-29 11:15:10 -04:00
Martin Diehl
d2cfcdaca0
reference Data for ODF sampling (hybridIA) + skeleton of a test
2020-09-28 16:14:27 +02:00
Martin Diehl
95b85626d8
general hybridIA functionality
2020-09-28 07:40:43 +02:00
Martin Diehl
8ec1014134
Merge remote-tracking branch 'origin/development' into cleaning
2020-09-27 18:11:43 +02:00
Vitesh Shah
e8e1960391
Consistency for docstrings
2020-09-26 18:02:25 +02:00
Vitesh Shah
d0028b2eea
Merge branch 'development' into fix-docstrings-for-sphinx
2020-09-26 17:56:42 +02:00
Martin Diehl
9e3506b8ef
thorougly testing seeding functionality
2020-09-25 07:41:58 +02:00
Philip Eisenlohr
e58cc4bfa0
removed substitute call for direct mapping; added seed from averaging of material ID cloud
2020-09-24 22:06:43 -04:00
Martin Diehl
4960cf43d4
documented and tested
2020-09-24 21:43:04 +02:00
Martin Diehl
e5b414419a
Poisson disc for periodic situation
2020-09-24 21:26:16 +02:00
Martin Diehl
b5ea04424b
Merge remote-tracking branch 'origin/development' into seeds-module
2020-09-24 20:58:53 +02:00
Philip Eisenlohr
8c8db5b99f
switched "Geom.materials" to "Geom.material"
2020-09-23 17:27:15 -04:00
Martin Diehl
b995f34834
Merge branch 'development' into geom-fully-out-of-place
2020-09-23 22:50:20 +02:00
Martin Diehl
8c83566b71
suppress warning
...
we already handle the invalid FPE
2020-09-23 21:10:39 +02:00
Martin Diehl
9bce1ddc29
simplified
2020-09-23 20:48:34 +02:00
Franz Roters
3612b17295
corrected Sphinx warnings
2020-09-23 16:21:20 +02:00
Martin Diehl
c85d27baec
functionality for seed creation
2020-09-23 09:45:36 +02:00
Martin Diehl
ae579d8baa
allow to specify seed IDs explicitly
2020-09-23 09:28:00 +02:00
Sharan Roongta
5a64dd30e1
Merge branch 'development' into modernize-testing
2020-09-23 00:05:59 +02:00
Philip Eisenlohr
683161d479
Merge branch 'development' into geom-fully-out-of-place
2020-09-22 15:22:58 -04:00
Philip Eisenlohr
05835bacd3
removed set_X(), duplicate(), and .homogenization; renamed ".microstructure" to ".materials"
2020-09-22 14:49:28 -04:00
Martin Diehl
716a406361
Merge remote-tracking branch 'origin/master' into modernize-testing
2020-09-22 16:51:36 +02:00
Franz Roters
7801f527f2
Merge remote-tracking branch 'origin/load-save-X-no-suffix' into development
2020-09-22 14:57:39 +02:00
Martin Diehl
5ef761fb98
inform the user about missing items in material.yaml
2020-09-21 19:10:20 +02:00
Philip Eisenlohr
188905766f
removed Geom.get_X() methods in favor of direct property access
2020-09-21 11:13:53 -04:00
Philip Eisenlohr
ca2f3f9493
set_X and add_comments methods now default to out-of-place
2020-09-21 10:29:07 -04:00
Martin Diehl
7bdd44a3d9
consistent names:
...
default file operations: save/load, non-default save_xx/load_xx
2020-09-20 22:04:28 +02:00
Martin Diehl
6ab88aad2b
default format for Table is ASCII
...
hence, renamed load_ASCII/save_ASCII to load/save
2020-09-20 20:45:06 +02:00
Philip Eisenlohr
7cbd422ae3
fixed coprime error when encountering NaN
2020-09-19 13:38:32 -04:00
Martin Diehl
6f45203c98
first version of a pyaml based class for material configuration
...
pyaml is (again) actively maintained and the ruamel.pyaml API is
instable
2020-09-19 13:01:19 +02:00
Martin Diehl
0746a2f3a4
give visual feedback
...
in most tests, this is done manually
2020-09-19 08:33:15 +02:00
Martin Diehl
c42511f101
small polishing
2020-09-18 16:32:59 +02:00
Martin Diehl
f23b89f055
get rid of annoying warning during test
2020-09-18 16:30:22 +02:00
Martin Diehl
c935ba1215
user friendly self reporting
2020-09-18 16:23:23 +02:00
Martin Diehl
1849ff0330
polishing
2020-09-18 15:03:51 +02:00
Martin Diehl
cdf3323774
Merge remote-tracking branch 'origin/development' into load-save-X
2020-09-18 14:21:43 +02:00
Franz Roters
190f8a82d4
Merge branch 'texture-components-in-rotation-class2' into 'development'
...
Texture components in rotation class2
See merge request damask/DAMASK!225
2020-09-18 13:31:42 +02:00
Vitesh
ca689193f6
Merge branch 'new-random-style' into 'development'
...
new style for numpy random numbers
See merge request damask/DAMASK!224
2020-09-16 11:12:55 +02:00
Martin Diehl
c71768a37a
polishing
2020-09-16 06:33:17 +02:00
Philip Eisenlohr
ed006d1a89
streamlined fiber/spherical component sampling
2020-09-15 19:12:30 -04:00
Philip Eisenlohr
c6be6fe87f
fixed spherical component sampling and testing
2020-09-15 18:40:05 -04:00
Philip Eisenlohr
82ed546ff7
Merge branch 'texture-components-in-rotation-class2' of magit1.mpie.de:damask/DAMASK into texture-components-in-rotation-class2
2020-09-15 18:14:19 -04:00
Philip Eisenlohr
0a34e342e4
fixed fiber component sampling and testing
2020-09-15 18:14:15 -04:00
Philip Eisenlohr
d6378ec9bc
shortened from_fiber_component algorithm
2020-09-15 16:34:19 -04:00
Martin Diehl
ad2badd3be
[skip ci] vectorized and simplified
...
based on Philips ideas. Test requires from_axis_angle fix
2020-09-15 22:13:28 +02:00
Philip Eisenlohr
d02617c961
fixed normalization of multidimensional axes (from_Rodrigues, from_axis_angle)
2020-09-15 13:09:24 -04:00
Martin Diehl
18c38f1284
polishing
2020-09-15 13:49:44 +02:00
Martin Diehl
2a082b7983
methods for texture component calculations
2020-09-15 12:11:46 +02:00
Martin Diehl
82e41d92ce
new style for numpy random numbers
...
https://numpy.org/doc/stable/reference/random/index.html?highlight=random#quick-start
https://albertcthomas.github.io/good-practices-random-number-generators/
2020-09-15 08:12:02 +02:00
Philip Eisenlohr
2114c51098
revert mistakenly made header length change in array-comparison
2020-09-15 01:47:26 -04:00
Philip Eisenlohr
96ad358f83
modified file reading/writing methods to load_X, save_X formalism
2020-09-15 01:14:05 -04:00
Martin Diehl
b298962101
Merge branch 'development' into table-out-of-place-only
2020-09-14 08:06:44 +02:00
Martin Diehl
f6758ecc28
table class operates out of place
2020-09-14 07:04:01 +02:00
Martin Diehl
a5d5638e4a
allow uncompressed files
2020-09-12 13:46:55 +02:00
Philip Eisenlohr
865c90d00b
first check data type, then determine length of data...
2020-09-09 19:10:03 -04:00
Philip Eisenlohr
7d9a4c08ce
Do not strictly require np.ndarrays for grid, size, or origin when not essential for functionality.
2020-09-10 00:59:40 +02:00
Philip Eisenlohr
9fb3fef4b0
changed British "normalise" to US "normalize" as we (should) follow US English everywhere else.
2020-09-08 10:39:31 -04:00
Philip Eisenlohr
a4785ba562
modified file writing of geom and table to a general to_file() that takes a "format=" argument
2020-09-03 10:53:16 -04:00
Philip Eisenlohr
6785062a10
Merge branch 'development' into 'vtk-to-file-method'
...
# Conflicts:
# python/tests/test_VTK.py
2020-08-31 21:10:29 +02:00
Franz Roters
6986d20b32
Merge branch 'geom-out-of-place' into 'development'
...
Geom methods are now out-of-place, i.e. return an updated duplicate
See merge request damask/DAMASK!203
2020-08-31 12:39:01 +02:00
Martin Diehl
c58693328e
don't try to access folders that don't exist
...
this happened in the case when different types of output exist in
different phases, e.g.
Aluminum: generic, plastic, sources
Steel: generic, plastic
We are a little bit inconsistent because 'generic' and 'plastic' are
always created (even if empty) but 'sources' will only exist if it
contains output. In future, we should have only folders that actually
contain data
2020-08-28 12:45:41 +02:00
Franz Roters
9457435612
Merge branch 'polishing-for-release' into 'development'
...
Polishing for release
See merge request damask/DAMASK!206
2020-08-27 17:01:43 +02:00
Martin Diehl
94797f8325
ignore all kinds of FPE
2020-08-27 09:32:49 +02:00
Martin Diehl
c5761831e2
more meaningful message
...
if add_xxx (Results) does not find matching datasets, inform the user
about this fact instead of saying
TypeError: object of type 'IMapUnorderedIterator' has no len()
2020-08-27 00:14:37 +02:00
Philip Eisenlohr
c2191fd930
Make logic to mask (outside of) primitive more apparent (hopefully).
2020-08-27 00:06:52 +02:00
Martin Diehl
229f6139c8
better user experience
...
- no meaningless warnings regarding floating point precision
- meaningful error message for invalid header
2020-08-26 23:54:56 +02:00
Philip Eisenlohr
b9f1421c6b
[skip ci] removed unnecessary line continuations "\"
2020-08-26 17:27:08 -04:00
Philip Eisenlohr
3f24d16603
renamed VTK.write() to VTK.to_file()
2020-08-26 16:15:15 -04:00
Philip Eisenlohr
da46e5ea9a
cannot use np.linalg.norm when dealing with exponent triple
2020-08-26 15:49:25 -04:00
Philip Eisenlohr
06b524d13e
added 'iso' as possible lattice (with no symmetry)
2020-08-26 21:39:20 +02:00
Sharan Roongta
68c2908ba8
Merge branch 'rename-hdf5-output' into development
2020-08-26 12:34:56 +02:00
Martin Diehl
bf401e56cf
avoid name clash with damask.Geom
2020-08-25 09:56:24 +02:00
Martin Diehl
800dac5d01
correct type handling
...
no reason to calculate fill twice
2020-08-25 08:47:24 +02:00
Martin Diehl
96d4975fc4
using numpy functionality
2020-08-25 08:34:04 +02:00
Martin Diehl
51da632108
aiming at testing each individual statement
2020-08-25 07:49:56 +02:00
Martin Diehl
2d98325fa4
increasing test coverage
2020-08-25 01:21:17 +02:00
Martin Diehl
2751cdb6af
support comments also in vtr
2020-08-25 00:40:14 +02:00
Martin Diehl
9a2ac31545
explicit is better then implicit
2020-08-24 23:35:46 +02:00
Martin Diehl
0ceba2a6d3
use central functionality
2020-08-24 23:28:26 +02:00
Martin Diehl
71e08ea66a
small fixes:
...
- numpy has multiple float variants
- start renaming microstructure -> materialpoint where it does not hurt
- no need for type check if comparing against set of valid directions
(or I miss some corner cases)
2020-08-24 23:23:47 +02:00
Philip Eisenlohr
2560f014a3
Merge remote-tracking branch 'origin/increase-geom-test-coverage' into geom-out-of-place
2020-08-24 17:17:31 -04:00
Martin Diehl
55443a3ff5
reflect change of variable names in file layout version
2020-08-24 22:54:09 +02:00
Martin Diehl
279d43ccc6
include version info + date in comments (Table class)
2020-08-24 19:04:59 +02:00
Martin Diehl
9d505c8518
better readable
...
- more explicit reporting
- always relative import for DAMASK
2020-08-24 09:58:24 +02:00
Martin Diehl
0d3ef29554
more logical encapsulation
...
- getting data out of VTK is a functionality of the VTK class. Need to
discuss whether the VTK class should also provide grid and size (works
only for rectilinear grid, so hiding VTK type is not possible
anymore), but the current situation requires the Geom class to rely on
'internals' of the VTK class
- header is specific to *.geom format, not to Geom objects.
2020-08-24 06:46:22 +02:00
Martin Diehl
507a165733
functionality for getting data
...
- handy for Geom class, but could be of general interest
- add/set/get comments: follows same functions as for Geom class
2020-08-24 06:40:36 +02:00
Philip Eisenlohr
446ac03b07
All geom methods are now out-of-place, i.e. return an updated duplicate (to allow for daisy chaining).
...
* Added comments when methods acted.
* Added diff method
* Added flip method
* Fixed add_primitive inversion bug (again...)
* Fixed cell centering bug in add_primitive
* Added missing tests
2020-08-23 19:43:46 -04:00
Martin Diehl
44015082a3
dead code (copy and paste error)
2020-08-24 00:34:07 +02:00
Martin Diehl
9867830d68
store history of geometry modifications
2020-08-23 23:52:48 +02:00
Martin Diehl
a1c78b778a
WIP: track history in VTK objects
2020-08-23 23:22:53 +02:00
Martin Diehl
7b50a3b364
material.config is not used anymore
2020-08-23 15:20:11 +02:00
Martin Diehl
d65371d42f
removed unused and untested functionality
...
PEP 20: Explicit is better than implicit.
2020-08-23 12:55:55 +02:00
Martin Diehl
6f79573140
more test coverage
2020-08-23 11:05:56 +02:00
Martin Diehl
07af7b2f98
geom is written to vtr exlcusively, not to general vtk
...
base tests on vtr
2020-08-23 10:50:15 +02:00
Martin Diehl
64e7582e8e
consistent interface to ndimage filters
...
Boolean 'periodic' sets mode to 'wrap' or 'nearest'
2020-08-23 10:02:22 +02:00
Martin Diehl
975db01f31
microstructure -> materialpoint
...
at least for new functionality
2020-08-23 09:38:08 +02:00
Martin Diehl
5fb2d30ee4
fast and for arbitrary type
2020-08-23 09:02:17 +02:00
Martin Diehl
b731b1e768
Geom.to_vtk improvements
...
- should be integer
- should have a test
2020-08-23 08:49:49 +02:00
Philip Eisenlohr
2b09a7d31d
fixed Geom.canvas bug, added Geom.from_vtk, added mode,selection options to Geom.clean
2020-08-22 21:36:11 -04:00
Philip Eisenlohr
499ce01748
added Geom.copy() method
2020-08-22 13:57:31 -04:00
Martin Diehl
ff7eed4477
(unified) type hints
2020-08-08 20:56:17 +02:00
Martin Diehl
55a620b378
migrating to library
2020-08-08 20:14:30 +02:00
Martin Diehl
a0e0f28e51
migrating shell scripts to library
2020-08-08 19:42:34 +02:00
Martin Diehl
5fcff876f9
replace selectively
...
useful for vicinity_offset and add_primitive
2020-08-08 18:41:47 +02:00
Martin Diehl
56eb57d253
homogenization will be removed soon, stop reporting it
2020-08-08 18:24:17 +02:00
Karo
7824a61f2e
Merge branch 'user_defined_add_calculation' into 'development'
...
User defined add calculation
See merge request damask/DAMASK!195
2020-08-06 00:53:16 +02:00
Philip Eisenlohr
ce00371f52
fixed rounding bug and updated reference images
2020-08-05 10:44:10 -04:00
Philip Eisenlohr
e4103564a9
16bit color index; proper rounding of index values
2020-08-05 10:08:48 -04:00
Philip Eisenlohr
e73ffd6da9
fixed and condensed lo,hi range assignment
2020-08-04 20:29:27 +02:00
Martin Diehl
e07c00a592
polishing + simple test
...
autoscaling seems to be broken
2020-08-04 20:14:04 +02:00
Philip Eisenlohr
84551c9d1e
integrated former imageData functionality as "shade" method
2020-08-04 13:05:30 -04:00
Martin Diehl
ae20f5ffe6
attempt to fix parallel writing on MacOS
...
should resolve TypeError: cannot pickle
'vtkmodules.vtkIOXML.vtkXMLRectilinearGridWriter' object error
2020-08-03 18:19:38 +02:00
Martin Diehl
a9f53f4822
non-vectorized formulas can be implemented in a user functionc
2020-07-31 17:04:14 +02:00
Martin Diehl
50d7842dbe
more tests
2020-07-31 16:50:01 +02:00
Martin Diehl
aadce1e554
Merge branch 'development' into user_defined_add_calculation
2020-07-31 16:15:31 +02:00
Martin Diehl
4860f9c9ce
drop support for parallel marc versions
...
can still be handled by the user, but is a niche use case
2020-07-18 09:51:53 +02:00
Martin Diehl
2bbd68d964
with_suffix strips .1 from 2019.1
2020-07-16 09:33:17 +02:00
Martin Diehl
199ec51bf8
typo
2020-07-15 21:59:43 +02:00
Martin Diehl
9225d439ab
object oriented path handling
2020-07-15 21:58:24 +02:00
Martin Diehl
fa7f7e6fa4
don't complain if ssh without -X/-Y
2020-07-15 21:19:09 +02:00
Martin Diehl
333e840b09
standard behavior
...
most modules have an __version__ attribute
2020-07-15 20:57:56 +02:00
Martin Diehl
6259984e93
simplified
...
complicated, but allows to use functions as properties
2020-07-15 20:54:37 +02:00
Martin Diehl
b0e06f180a
reading numpy manual ...
...
https://numpy.org/doc/stable/reference/generated/numpy.isclose.html
rtol=1.e-8, b=1 gives atol+btol=1.e-8+1e-9, simplified to 1e-8
2020-07-13 22:48:29 +02:00
Francisco Jose Gallardo Basile
e1bbaac0d7
Merge branch 'Vectorize-Orientation' into 'development'
...
Vectorize orientation
See merge request damask/DAMASK!186
2020-07-03 12:22:04 +02:00
Martin Diehl
7b3d1204fa
easier to use
2020-07-03 07:29:31 +02:00
Philip Eisenlohr
d4f97f8346
Merge branch 'misc-improvements' into 'development'
...
Misc improvements
See merge request damask/DAMASK!184
2020-07-02 21:52:47 +02:00
Philip Eisenlohr
7b899f1ff1
fixed output number format width for single increment0
2020-07-02 11:33:09 -04:00
Philip Eisenlohr
5a96708f41
added __iadd__ method
2020-07-02 10:26:04 -04:00
Philip Eisenlohr
f3ff2e7412
added __iadd__ method
2020-07-02 10:25:04 -04:00
Philip Eisenlohr
3b72d0ec72
added __invert__ method to reverse colormap
2020-07-02 10:13:47 -04:00
Martin Diehl
b88becb9d0
don't go out of focus during initialization
2020-07-02 08:25:35 +02:00
Martin Diehl
208d5109d4
still needed ...
2020-07-02 08:14:13 +02:00
Martin Diehl
86dc7054a4
still needed
2020-07-01 22:11:16 +02:00
Martin Diehl
4abd77fccf
more test coverage
2020-07-01 17:31:16 +02:00
Martin Diehl
be1eb996e0
more tests and cleaning
2020-07-01 15:12:34 +02:00
Martin Diehl
a7e3dd5a56
Merge branch 'development' into Vectorize-Orientation
2020-07-01 13:30:39 +02:00
Martin Diehl
e18a5b8a1b
simplifications + more tests
2020-07-01 08:57:28 +02:00
Martin Diehl
de8e9b5fc1
fast reduced operation
2020-07-01 00:37:02 +02:00
Martin Diehl
23365660d8
polishing
2020-06-30 23:18:32 +02:00
Martin Diehl
ef0c78745a
fix for vectorized in_SST + test
2020-06-30 23:05:41 +02:00
Martin Diehl
49d448dced
vectorized and cleaned
2020-06-30 21:43:57 +02:00
Martin Diehl
be21d1289d
using slicing method
2020-06-30 16:33:04 +02:00
Martin Diehl
c86e3e292c
WIP: cleaning namespace
2020-06-30 14:07:10 +02:00
Martin Diehl
9d94b521ad
polishing
2020-06-30 13:31:58 +02:00
Martin Diehl
ce7018164f
WIP: more reasonable naming
2020-06-30 13:05:06 +02:00
Martin Diehl
b8b34080fe
enable array like slicing/iteration
2020-06-30 12:16:47 +02:00
Martin Diehl
c8adfae0fa
bugfix: wrong variables used
2020-06-30 07:16:49 +02:00
Philip Eisenlohr
decbe8074a
not using unassigned variable
2020-06-29 22:22:21 -04:00
Philip Eisenlohr
d3b3d628b2
PEP conformity...
2020-06-29 22:07:14 -04:00
Philip Eisenlohr
39aac76859
__add__, from_range, fixed missing np.array(colors), show peppered...
2020-06-29 22:04:03 -04:00
Philip Eisenlohr
97ca1b1a9b
try wxPython before tkinter, recent macOS otherwise fails
2020-06-29 22:02:12 -04:00
f.basile
d06daec4cb
reducec vectorized is improved
2020-06-29 18:25:45 +02:00
Martin Diehl
2d0c680daf
useful information
2020-06-29 07:30:42 +02:00
f.basile
4875191ffd
change if statement so github doesnt complain
2020-06-28 19:32:22 +02:00
f.basile
a99f016438
problem with if value is true / if value == True
2020-06-28 19:29:52 +02:00
Martin Diehl
37f7362cbe
Merge branch 'development' into misc-improvements
2020-06-28 19:23:17 +02:00
Martin Diehl
323f828606
Merge branch 'development' into modernize_colormap
2020-06-28 19:09:52 +02:00
f.basile
8484d2e6cc
fix github stuff
2020-06-28 19:05:10 +02:00
f.basile
352c4e95f1
more vectorized
2020-06-28 19:03:06 +02:00
Martin Diehl
b3f5ee022a
unified style
2020-06-28 11:40:19 +02:00
Martin Diehl
6a748d2edf
do not expand single strings into characters
2020-06-28 11:19:18 +02:00
Martin Diehl
ae4146f1c6
report version, write out 'modern' ASCII table style
2020-06-28 11:18:22 +02:00
Martin Diehl
e81b67e964
polishing
2020-06-28 10:32:59 +02:00
Martin Diehl
1c03bd157f
more testing
2020-06-28 10:25:28 +02:00
Martin Diehl
b78c809375
real output
2020-06-28 10:25:28 +02:00
Martin Diehl
3513754647
low/high instead of left/right
2020-06-28 10:25:28 +02:00
Martin Diehl
d965d66319
[skip ci] documenting
2020-06-28 09:34:10 +02:00
Martin Diehl
8a9a768a77
support pathlib.Path
2020-06-28 07:17:51 +02:00
Martin Diehl
8c8132bcd7
coordinates should not have random names
2020-06-27 23:37:09 +02:00
Martin Diehl
c929af12c0
testing/polishing
2020-06-27 19:44:12 +02:00
Martin Diehl
234699bd18
reverse should return DAMASK colormap
2020-06-27 16:25:10 +02:00
Martin Diehl
e779e190ea
new colormap class for use in python
...
- based on matplotlib "ListedColormap"
- constructors
- Array of RGB values (inherited),
- 'from_bounds': perceptual uniform colormap within given bounds
- 'from_predefined': from matplotlib or DAMASK templates
- export to files (WIP)
- preview on screen
2020-06-27 16:12:40 +02:00
Martin Diehl
1f9b5280cb
forgotten debug statement
2020-06-26 11:47:04 +02:00
Martin Diehl
a69f82e7c3
speed up vtk out
...
- limit to single precision
- write in background
2020-06-26 11:45:54 +02:00
Martin Diehl
bfae88a364
numpy compatible
2020-06-26 11:45:30 +02:00
Martin Diehl
bddb514072
more systematic reporting
2020-06-26 11:45:06 +02:00
Martin Diehl
3290e2c585
handle even obscure directions
2020-06-25 08:29:36 +02:00
Martin Diehl
5d7213b062
restore reminder to document changes
...
causes conflicts with outdated tests and is not urgent: postpone until
release.
2020-06-25 08:19:07 +02:00
Martin Diehl
c9829f0f1f
only Chuck Norris can divide by zero
2020-06-25 08:18:39 +02:00
Martin Diehl
cd23937af5
Merge branch 'development' into f-strings
2020-06-25 07:46:24 +02:00
Philip Eisenlohr
e64d353865
condensed scale_to_coprime; added test of scale_to_coprime
2020-06-24 18:37:33 -04:00
Philip Eisenlohr
9999560247
easier understanding of from_ang data layout interpretation
2020-06-24 18:36:43 -04:00
Philip Eisenlohr
14d3b7e66d
more f-stringing
2020-06-24 16:59:55 -04:00
Philip Eisenlohr
966b6f8007
shapes init copes with integers instead of strict tuples; introduced f-strings
2020-06-24 14:18:06 -04:00
Philip Eisenlohr
f8f433e826
introduced f-strings
2020-06-24 14:13:56 -04:00
Philip Eisenlohr
ff858fd4c8
[skip ci] corrected help string for "srepr"
2020-06-24 20:13:09 +02:00
Philip Eisenlohr
4314ec1f37
[skip ci] started to replace .format() with f-strings
2020-06-24 11:02:37 -04:00
Anderson Wallace Paiva do Nascimento
3d93a5ff00
Merge branch 'migrate-to-pathlib' into 'development'
...
Migrate to pathlib
See merge request damask/DAMASK!177
2020-06-24 14:54:36 +02:00
Martin Diehl
6fa5ae6ebf
literature from Karo
2020-06-22 23:14:58 +02:00
Martin Diehl
e33895dd35
[skip ci] better logic
2020-06-21 10:37:09 +02:00
Martin Diehl
c6a5bb8a3b
is 2020
2020-06-21 10:04:45 +02:00
Martin Diehl
4c5939ef23
small polishing
2020-06-20 22:51:00 +02:00
Martin Diehl
15b43bcebf
from_directions is not general, removed
...
polishing
2020-06-20 19:57:49 +02:00
Martin Diehl
3f63a4fdbc
[skip ci] typo
2020-06-20 18:13:34 +02:00
Martin Diehl
4dae3643c9
vectorized IPF color working
...
results also uses the vectorized form.
Still needs careful checking
2020-06-20 17:15:13 +02:00
Martin Diehl
ebdb65d31f
standard broadcast_to behavior
2020-06-20 16:35:22 +02:00
Martin Diehl
262346ff5a
polishing
2020-06-20 16:34:19 +02:00
Martin Diehl
d93ed2bc5c
several improvements:
...
- vectorized from_directions
- more tests (96% coverage, only random functionality is untested)
- updated documentation, folloing numpy standard
- inverse operator '~' introduced
2020-06-20 12:20:43 +02:00
Martin Diehl
055fa64f5f
better readable
2020-06-19 12:25:46 +02:00
Martin Diehl
13bf7515ce
WIP (broken?): vectorized calculation of IPF color
2020-06-19 10:54:13 +02:00
Martin Diehl
1648963b57
vectorized equivalent orientation calculation
2020-06-18 22:53:04 +02:00
Martin Diehl
cdda556e18
small improvements
...
- hack for reporting multiple rotation
- bugfix for vectorized Rodrigues vector
- more general broadcasting (even more powerfull then np.broadcast_to)
2020-06-18 22:30:22 +02:00
Martin Diehl
fe5e5babfe
more useful for vectorized calculations
2020-06-18 22:29:28 +02:00
Samad Vakili
694b7ec3c5
mechanics done
2020-06-09 21:27:08 +02:00
f.basile
cb1779ef9a
fix pep257: D415 / First line should end with a period, question mark, or exclamation point (not e)
2020-06-05 13:49:30 +02:00
f.basile
eae9698d22
equivalent,related and inFZ vectorized + pytest
2020-06-05 13:48:12 +02:00
f.basile
ac09a2912a
fix python/damask/_orientation.py contains invalid python3 code 2
2020-06-04 16:45:44 +02:00
f.basile
6a24aee171
fix python/damask/_orientation.py contains invalid python3 code
2020-06-04 16:44:57 +02:00
f.basile
3897136f85
avoid python/damask/_orientation.py exceeds line length limit (maximum line length 141 > 132)
2020-06-04 16:43:28 +02:00
f.basile
0c41e33434
orientation.equivalent takes several rotations at the same time + small test"
...
"
""
2020-06-04 16:39:24 +02:00
Martin Diehl
a9c61ede69
bugfix: should also work if DAMASK_NUM_THREADS is not set
2020-06-03 20:24:18 +02:00
Martin Diehl
bda555fd1c
we are looking for a path, not for a file
2020-06-03 16:47:03 +02:00
Martin Diehl
bb5485927e
names like 2020.2 cannot be converted to int
2020-06-03 15:18:46 +02:00
Martin Diehl
5da1aa49bc
string should be a Path object
2020-06-03 15:17:00 +02:00
Martin Diehl
9b04a45bbd
bugfix (wrong variable name)
2020-06-03 13:53:00 +02:00
Martin Diehl
3be1a33820
easier to read
2020-06-03 13:32:47 +02:00
Martin Diehl
c5d0c7e52e
easier to read, more flexible
2020-06-03 10:44:40 +02:00
Martin Diehl
ac9fddd9e9
Merge remote-tracking branch 'origin/development' into misc-improvements
2020-06-02 00:12:50 +02:00
Martin Diehl
a51cc39613
proper docstring
2020-06-01 22:13:01 +02:00
Martin Diehl
72a0b1fae5
testing and polishing
2020-06-01 11:33:22 +02:00
Martin Diehl
7a193639fb
also show datasets without unit
...
currently, this is only the orientation dataset
Also enable renames. Since this alters the history, the user need to
enable this
2020-05-31 23:50:06 +02:00
Martin Diehl
bcb0ce5e5e
typo
2020-05-31 18:51:12 +02:00
Martin Diehl
adb92de8cc
Merge branch 'development' into less-shell-scripts
2020-05-31 18:49:51 +02:00
Martin Diehl
421b8f4268
documented function interfaces
2020-05-30 17:31:50 +02:00
Martin Diehl
865a505186
fix for logarithmic strain
2020-05-27 22:32:35 +02:00
Martin Diehl
56afc03f3c
only vectorized version needed
...
use single point/simple versions only for testing
2020-05-27 18:05:08 +02:00
Martin Diehl
0fe450a033
Merge branch 'misc-improvements' into less-shell-scripts
2020-05-27 17:40:13 +02:00
Martin Diehl
31f72aa912
handle min/mid/max eigenvalues/vectors separately
...
storing as matrix/vector is not favorable for paraview and in many
cases, either min or max are of interest only
2020-05-27 17:39:46 +02:00
Samad Vakili
f9c33d9210
mechanics checked for an array with arbitrary dimensions
2020-05-26 16:27:27 +02:00
Martin Diehl
908788271a
Merge branch 'misc-improvements' into less-shell-scripts
2020-05-26 07:24:03 +02:00
Martin Diehl
7f09c90c7d
different h5py versions seem to throw different errors
2020-05-26 06:39:11 +02:00
Martin Diehl
6f7c7005b0
bugfix:
...
- proper overwrite
- no out of bounds error for empty time selection (just pick nothin)
2020-05-25 23:54:06 +02:00
Martin Diehl
d6877da2b6
single source of truth
2020-05-25 20:15:45 +02:00
Martin Diehl
d9d089c359
avoid repetition and do correct encode/decode
2020-05-25 20:13:57 +02:00
Martin Diehl
5d0a2aac8f
polishing reporting
2020-05-25 20:13:57 +02:00
Martin Diehl
b9e16ea951
overwriting datasets makes sense in special cases
...
but prevent user from accidently doing that and store the information
2020-05-25 20:13:57 +02:00
Martin Diehl
248f199a7b
track creation time
2020-05-25 18:51:10 +02:00
Martin Diehl
b1b8d02320
typo
2020-05-25 16:41:23 +02:00
Martin Diehl
9d7158b51a
Merge branch 'misc-improvements' of magit1.mpie.de:/damask/DAMASK into misc-improvements
2020-05-25 16:40:23 +02:00
Martin Diehl
f07eaf19d0
fixed broadcasting + corresponding test
2020-05-25 16:37:08 +02:00
Martin Diehl
784d6d09d9
cleaning
2020-05-25 15:55:38 +02:00
Martin Diehl
dad7c7a2a0
Merge branch 'vectorize_rotation' into misc-improvements
2020-05-25 15:50:03 +02:00
Martin Diehl
3e2cbef780
Merge remote-tracking branch 'origin/development' into vectorize_rotation
2020-05-25 15:46:27 +02:00
Martin Diehl
77b68ab86f
using rotation class for rotations
2020-05-25 09:39:39 +02:00
Martin Diehl
39505507f1
not needed anymore
2020-05-25 08:07:12 +02:00
Martin Diehl
17aa3c00dc
more tests
2020-05-24 22:52:00 +02:00
Martin Diehl
296308e11e
fix for rotation around 90 deg
...
more tests
2020-05-24 20:52:19 +02:00
Martin Diehl
34adefd4ca
simplified
2020-05-24 18:30:45 +02:00
Samad Vakili
987c4a9e8d
first commit mechanics
2020-05-24 18:30:44 +02:00
Martin Diehl
594fcb2b72
seems more appropriate
2020-05-24 15:10:53 +02:00
Martin Diehl
3231a49107
centralize functionality
2020-05-24 09:39:58 +02:00
Martin Diehl
a3d9520c4b
polishing
2020-05-23 15:54:28 +02:00
Martin Diehl
0549e33a00
vectorized/fast
2020-05-23 08:38:57 +02:00
Martin Diehl
7bd681a5ed
very simple test
2020-05-22 19:04:02 +02:00
Martin Diehl
b33de48528
testing broadcasting
2020-05-22 15:12:37 +02:00
Martin Diehl
23b1381eaf
give credit
2020-05-21 11:30:25 +02:00
Martin Diehl
16f30a10d0
polishing
2020-05-20 23:50:08 +02:00
Martin Diehl
353fd3ceb6
more tests
...
now 95% test coverage of Rotation class
2020-05-20 19:16:31 +02:00
Martin Diehl
128a96e7f6
vectorized formula is enough
2020-05-20 18:13:51 +02:00
Martin Diehl
bb419d49df
polishing
2020-05-20 16:19:12 +02:00
Martin Diehl
9240dd59b2
mark as internal
...
all functionality (+ sanity checks) can be done with the class
functionality
2020-05-20 11:11:07 +02:00
Martin Diehl
9694767997
all seems to work now
2020-05-20 09:01:38 +02:00
Martin Diehl
1d8903bb0c
transition code
2020-05-20 00:18:44 +02:00
Martin Diehl
1fa4a07bb8
for backward compatibility
2020-05-19 23:39:01 +02:00
Martin Diehl
3e00269179
again some more tests
2020-05-19 23:24:12 +02:00
Martin Diehl
1c53a37de4
more tests and adjustments to tolerances
2020-05-19 21:03:30 +02:00
Martin Diehl
a6b0aaffba
more tests
...
Hotfix needed for axis angle to matrix (not used in DAMASK, needs
further investigation)
2020-05-19 19:41:50 +02:00
Martin Diehl
de79a5af43
directly test the internal conversions
...
some work to do ...
2020-05-19 09:55:23 +02:00
Martin Diehl
065c624f94
fix for backward compatibility
2020-05-19 09:10:14 +02:00
Martin Diehl
ebf05a279e
standard name
2020-05-19 08:59:03 +02:00
Martin Diehl
1a3a4a800e
vectorized
2020-05-19 07:59:24 +02:00
Martin Diehl
b6eebcd704
small fixes (testing P=+1)
2020-05-19 07:57:40 +02:00
Martin Diehl
b200894a40
bugfix and further test
2020-05-19 07:57:40 +02:00
Martin Diehl
3dc90ddb94
use the formula from the paper, not from the reference implementation
...
a few multiplications should be faster than a transpose
2020-05-19 07:57:40 +02:00
Martin Diehl
a25dd1c438
cleaning
2020-05-19 07:57:40 +02:00
Martin Diehl
743e91a78d
cleaning
2020-05-17 08:01:34 +02:00
Martin Diehl
652ece6bb3
fix: wrong capitalization
2020-05-17 07:25:17 +02:00
Martin Diehl
2550447169
Merge branch 'development' into docstring-sphinx-adjustments
2020-05-17 00:10:58 +02:00
Martin Diehl
a90865c877
non-vectorized versions not needed anymore
...
using them only for testing purposes
2020-05-17 00:10:18 +02:00
Martin Diehl
9ba419c2c3
Merge branch 'development' into vectorize_rotation
2020-05-16 20:58:06 +02:00
Martin Diehl
044f069437
bugfix: selected wrong data
2020-05-16 17:06:55 +02:00
Martin Diehl
a279785149
Merge branch 'development' into misc-improvements
2020-05-16 17:01:48 +02:00
Martin Diehl
19638168e6
more sensible type checking and errors
2020-05-16 13:23:32 +02:00
Martin Diehl
9fa1539163
using new names
2020-05-16 11:17:12 +02:00
Martin Diehl
235f3c0df7
bugfix: copy and paste error
2020-05-16 11:16:52 +02:00
Martin Diehl
e2ba294b75
bugfix: wrong variable
2020-05-16 09:40:32 +02:00
Martin Diehl
2dc46b783a
simplified and tested
2020-05-16 00:58:40 +02:00
Martin Diehl
dc508cdfce
Merge remote-tracking branch 'origin/misc-improvements' into vectorize_rotation
2020-05-15 23:25:42 +02:00
Martin Diehl
3fd868dc45
Merge branch 'development' into vectorize_rotation
2020-05-15 23:25:36 +02:00
Martin Diehl
b5b9bfaa99
need space at end of definition list
2020-05-13 11:36:16 +02:00
Martin Diehl
66b928c5af
using doctest style
...
https://docs.python.org/3/library/doctest.html
https://numpy.org/doc/stable/docs/howto_document.html#sections (section
15)
2020-05-13 10:47:49 +02:00
Martin Diehl
6f3b526811
Merge branch 'development' into docstring-sphinx-adjustments
2020-05-13 10:38:45 +02:00
Martin Diehl
b75e98ca3f
forgotten debug statements
...
+ polishing of XDMF output
2020-05-07 19:12:05 +02:00
Martin Diehl
c2b4f5516e
DADF5_postResults tries to combine datasets, this does not work
2020-05-07 00:14:14 +02:00
Martin Diehl
ef4a4dad4a
shape property and numpy-like broadcasting
...
this makes it easy to apply a single rotation to a field
2020-05-05 14:44:08 +02:00
Martin Diehl
eeb0df3a55
do not store absolute path
2020-05-05 10:42:54 +02:00
Martin Diehl
31c397255d
equivalent (for a valid DADF5 file) but faster
2020-05-05 10:18:48 +02:00
Martin Diehl
14cdc031e0
write XDMF files
...
the limitation to scalar, 3-vector and 3x3-tensor comes currently from
XDMF/vtk/paraview
extension to multiple constituents and unstructured meshes might be
possible
2020-05-05 09:57:22 +02:00
Martin Diehl
6e99956b58
Merge branch 'development' into misc-improvements
2020-05-05 09:22:53 +02:00
Martin Diehl
5f3f87cd68
vectorizing cubochoric conversions
2020-05-04 17:43:38 +02:00
Martin Diehl
7d1e0850ab
test + resulting bug fix
2020-05-03 17:04:03 +02:00
Martin Diehl
5d4b554b00
WIP: vectorizing
2020-05-03 07:48:13 +02:00
Martin Diehl
c241eaec15
rely on correct input data
2020-05-03 07:23:46 +02:00
Martin Diehl
f0bb50b97d
vectorized rotation function
2020-05-02 15:22:17 +02:00
Martin Diehl
c7a77ebc26
Merge branch 'development' into integrate-lambert
2020-05-02 09:21:42 +02:00
Martin Diehl
2df78e4e2f
vecorized pyramid function for lambert projection
2020-05-02 09:17:31 +02:00
Martin Diehl
ce9bdc50a4
common variable names
2020-04-29 14:46:58 +02:00
Martin Diehl
9e79935add
Merge branch 'development' into less-shell-scripts
2020-04-28 20:43:16 +02:00
Martin Diehl
6864b9525d
go back to original dir as soon as possible
2020-04-26 14:52:27 +02:00
Martin Diehl
f02c77b6d0
more reasonable tolerance
...
still relatively high because ctf files store position with constant
number of digits and floating dot. Hence, the precision is very low
2020-04-24 20:01:57 +02:00
Martin Diehl
1610d5a5d2
Merge branch 'development' into misc-improvements
2020-04-24 20:01:40 +02:00
Martin Diehl
707324887f
inform the user about planned functionality
2020-04-24 06:52:09 +02:00
Martin Diehl
042f64200c
Merge branch 'development' into vectorize_rotation
2020-04-24 06:31:14 +02:00
Francisco Jose Gallardo Basile
898cf42aca
Merge branch 'fix-grid-convention' into 'development'
...
Fix grid convention
See merge request damask/DAMASK!160
2020-04-23 19:02:23 +02:00
Martin Diehl
cc3fa156cf
support change of directory one object has been created
2020-04-23 16:29:20 +02:00
Martin Diehl
a0b7c51bec
less strict tolerances
...
grid position reported by EBSD has only a few decimal places, so
rounding errors occur
2020-04-22 23:32:34 +02:00
Martin Diehl
8ba547a1b5
no need for an extra file
2020-04-22 13:23:50 +02:00
Martin Diehl
a39e6b7af9
hide internal variables
2020-04-22 13:12:30 +02:00
Martin Diehl
a8c6fdd9ba
for the sake of completeness
2020-04-22 07:40:02 +02:00
Martin Diehl
7efe14be35
Merge branch 'development' into vectorize_rotation
2020-04-21 19:29:30 +02:00
Martin Diehl
97a5880d76
ensure correct shape
2020-04-21 13:22:55 +02:00
Martin Diehl
75d7238376
vectorized as_XXX
2020-04-21 12:27:50 +02:00
Martin Diehl
ae3eca5f98
fix for vectorized from_random
2020-04-21 12:08:16 +02:00
Martin Diehl
ac75b9e4ca
improved reporting + test
2020-04-21 11:17:15 +02:00
Martin Diehl
23fc58699f
vectorize Rotation.fromXXX functions
2020-04-21 10:55:45 +02:00
Martin Diehl
4a05cdbbbb
copy and paste error
2020-04-21 03:26:26 +02:00
Martin Diehl
528378eba2
polishing/bugfix
...
* HDF5 data has x fast, therefore reshape needs to be aware of 'F' order
* Datatype for True/False is 'bool' in python, not 'Boolean'
2020-04-20 22:51:51 +02:00
Martin Diehl
00cb17ccfa
commenting
2020-04-20 22:47:55 +02:00
Martin Diehl
93db1b37ca
some useful information
2020-04-20 22:32:13 +02:00
Martin Diehl
25d29bf438
no need for Fortran order forward/backward
2020-04-20 20:24:55 +02:00
Martin Diehl
1ccda22ae3
nothing to flatten here
2020-04-20 20:16:25 +02:00
Martin Diehl
4db91fff03
simplified
2020-04-20 20:14:27 +02:00
Martin Diehl
f519e62cd5
testing data layout checks
2020-04-20 13:56:33 +02:00
Martin Diehl
9979eb58f4
consistent layout for grid data
...
has now always the shape ([x,y,z,...]) with x fastest. For conversion from or
to linear layout ([x*y*z,...]), e.g. storage in ASCII table, reshape needs
to have the 'F' option.
Credits to Vitesh and Fran for pointing this out.
2020-04-20 13:09:59 +02:00
Martin Diehl
bce5ed62d5
polishing
2020-04-20 10:13:15 +02:00
Martin Diehl
e3958263e3
Merge branch 'development' into misc-improvements
2020-04-15 21:03:51 +02:00
Karo Sedighiani
03aa6f9c80
Merge branch 'vectorize_rotation' into development
2020-04-14 19:34:11 +02:00
Philip Eisenlohr
d3eba41519
[skip ci] fixed bug of double execution of np.degrees in asAxisAngle
2020-04-14 12:22:41 -04:00
Martin Diehl
69857176b2
search and replace error
2020-04-14 15:33:20 +02:00
Martin Diehl
93c75cada3
numpydoc style
2020-04-12 15:38:38 +02:00
Martin Diehl
aaeec16c66
proper indentation for sphinx
2020-04-12 15:34:29 +02:00
Martin Diehl
b6b98bd14f
more meaningful
2020-04-12 15:20:09 +02:00
Martin Diehl
c6c1878b13
asterisk is the emphasize sign for restructured text
...
not really needed here
2020-04-12 15:19:32 +02:00
Martin Diehl
3d10266fbc
similar style as for other conversions
2020-04-12 01:29:11 +02:00
Martin Diehl
04fbc38a4b
keep namespace clean and avoid overwriting in fromXXX functions
2020-04-12 01:19:11 +02:00
Martin Diehl
f41a47ce8b
polishing and slightly stricter tolerances
2020-04-11 23:27:25 +02:00
Martin Diehl
c0c37fe6a5
polishing
2020-04-11 20:42:46 +02:00
Martin Diehl
c57f96cd6e
also missing
2020-04-11 18:32:06 +02:00
Martin Diehl
8c61f67e34
cleaning
2020-04-11 18:24:54 +02:00
Martin Diehl
296a75d452
where not needed
2020-04-11 18:00:59 +02:00
Martin Diehl
fac33ec408
polishing
2020-04-11 17:23:54 +02:00
Martin Diehl
51104bfc13
do not transpose for the standard case
2020-04-11 17:19:12 +02:00
Martin Diehl
cb9daccdd7
homochoric representation vectorized
2020-04-11 16:14:40 +02:00
Martin Diehl
99655c9f61
more vectorized functions
2020-04-11 13:59:16 +02:00
Martin Diehl
4e759d6c98
more tests for orientation conversion
...
ensure that all parameters are within range and check if
multidimensional arrays at least run
2020-04-11 12:37:21 +02:00
Martin Diehl
3bfa2d679c
simpler/correct logic for eu2om
2020-04-11 11:36:37 +02:00
Martin Diehl
656c0199cf
sorted and make explicitly available what we need
2020-04-10 12:32:33 +02:00
Martin Diehl
9837390406
do not clutter namespace
...
we do not need damask.util.np etc
2020-04-10 12:30:39 +02:00
Martin Diehl
9c0ea13e4f
Merge branch 'development' into misc-improvements
2020-04-10 08:14:33 +02:00
Martin Diehl
bab3581b11
need to transpose eigenvectors to find the correct one
2020-04-09 15:01:01 +02:00
Martin Diehl
e502573e05
polishing
2020-04-09 14:20:43 +02:00
Martin Diehl
b025c1838e
simplified
2020-04-09 12:52:12 +02:00
Martin Diehl
cbfde73a29
more testing and related fixes
2020-04-09 07:40:20 +02:00
Martin Diehl
43e7639f77
WIP: implementing orientation matrix conversions
2020-04-09 00:47:43 +02:00
Martin Diehl
da30fb8396
qu(aternion) and eu(ler) vectorized and tested
2020-04-09 00:35:40 +02:00
Martin Diehl
464620b796
vectorized conversion from ax(is angle)
2020-04-08 21:24:59 +02:00
Martin Diehl
1ba01ba0db
adjusting tolerances
2020-04-08 18:15:50 +02:00
Martin Diehl
f365ae104d
adjusting tolerances
2020-04-08 17:55:05 +02:00
Martin Diehl
8f88480790
better readable error messages
2020-04-08 12:59:34 +02:00
Martin Diehl
b6f5548d8a
correct normalization at the corners
2020-04-08 12:23:28 +02:00
Martin Diehl
4e06e9a410
improved numerical stability for corner cases
2020-04-08 11:52:26 +02:00
Martin Diehl
ccf62ede52
bugfix for Cubochoric
...
forward and backward mappings are different
2020-04-08 11:41:42 +02:00
Martin Diehl
fbd61fda99
ignore comments
2020-04-02 11:54:34 +02:00
Martin Diehl
6ef7410e5a
testing VTK wrappers
2020-03-31 11:04:06 +02:00
Martin Diehl
396d428af7
bugfix: works for all cuboids, not just cubes
2020-03-29 23:09:43 +02:00
Martin Diehl
e61c1a027b
avoid detour via shell
2020-03-29 19:12:23 +02:00
Martin Diehl
bbce3456e8
advise from pylint
2020-03-22 22:30:38 +01:00
Martin Diehl
1dfdd264b7
small flaws detected by pylint
2020-03-22 16:31:14 +01:00
Martin Diehl
b6d50db177
do not use name of function
2020-03-22 16:21:49 +01:00
Martin Diehl
1e178287fe
4 space indentation
2020-03-22 16:13:35 +01:00
Martin Diehl
76caf422aa
bugfix: wrong indentation
...
strange that python has accepted that
2020-03-22 15:59:25 +01:00
Martin Diehl
3873a3d20d
restoring working structure for config submodule
2020-03-21 22:17:07 +01:00
Martin Diehl
4decae967a
nothing to inherit ..
2020-03-21 20:18:46 +01:00
Martin Diehl
c6025925ac
relative imports within damask package
2020-03-21 20:17:50 +01:00
Martin Diehl
c5e956f386
solver submodule structure working again
2020-03-21 20:14:15 +01:00
Martin Diehl
bcf3650211
slightly shorter.
...
w/o transpose, this seems to be more memory efficient
2020-03-21 19:40:49 +01:00
Martin Diehl
71da974bdc
quick prospector fixes for deprecated class
2020-03-21 18:29:42 +01:00
Martin Diehl
67f64b7a7a
polishing
2020-03-21 18:01:26 +01:00
Martin Diehl
20a06840b0
works also for arrays ...
2020-03-21 11:07:21 +01:00
Martin Diehl
2ad86e4202
shortened
2020-03-20 23:47:54 +01:00
Martin Diehl
eb66db9c36
Merge branch 'no-python-namespace-clutter' into MiscImprovements
2020-03-20 23:46:37 +01:00
Martin Diehl
76984a4dbd
more sensible check
...
works also for numpy arrays. Not sure why the old way is considered to
be "pythonic", I think it can just cause trouble
2020-03-20 23:42:23 +01:00
Martin Diehl
4d4f321872
following python convention
2020-03-20 08:49:33 +01:00
Martin Diehl
0556827f29
less error prone
2020-03-19 20:19:47 +01:00
Martin Diehl
892b7eee98
consistency check and new test
2020-03-19 17:34:49 +01:00
Martin Diehl
705694b97c
fix for test
2020-03-19 15:54:57 +01:00
Martin Diehl
e390982be7
clean first level structure
2020-03-19 15:19:11 +01:00
Martin Diehl
899cc913c4
python style names
2020-03-19 15:09:05 +01:00
Martin Diehl
327899890a
this works for internal
2020-03-19 15:06:25 +01:00
Martin Diehl
9bb0608187
maybe this is the cleaner way
2020-03-19 14:40:30 +01:00
Martin Diehl
c1d82197ad
cope with integers
2020-03-19 13:27:23 +01:00
Martin Diehl
0ebc5ab60e
no need to import modules, hide unwanted functions
2020-03-19 13:16:32 +01:00
Martin Diehl
27532cfa4e
small fixes
2020-03-19 12:03:55 +01:00
Martin Diehl
91e728d065
polishing
2020-03-19 11:30:36 +01:00
Martin Diehl
a80622292e
simplified (and working)
2020-03-19 10:59:53 +01:00