advise from pylint
This commit is contained in:
Martin Diehl
parent
1dfdd264b7
commit
bbce3456e8
|
|
@ -4,146 +4,146 @@ from . import Lattice
|
|||
from . import Rotation
|
||||
|
||||
class Orientation:
|
||||
"""
|
||||
Crystallographic orientation.
|
||||
"""
|
||||
Crystallographic orientation.
|
||||
|
||||
A crystallographic orientation contains a rotation and a lattice.
|
||||
"""
|
||||
A crystallographic orientation contains a rotation and a lattice.
|
||||
"""
|
||||
|
||||
__slots__ = ['rotation','lattice']
|
||||
__slots__ = ['rotation','lattice']
|
||||
|
||||
def __repr__(self):
|
||||
"""Report lattice type and orientation."""
|
||||
return self.lattice.__repr__()+'\n'+self.rotation.__repr__()
|
||||
def __repr__(self):
|
||||
"""Report lattice type and orientation."""
|
||||
return self.lattice.__repr__()+'\n'+self.rotation.__repr__()
|
||||
|
||||
def __init__(self, rotation, lattice):
|
||||
"""
|
||||
New orientation from rotation and lattice.
|
||||
def __init__(self, rotation, lattice):
|
||||
"""
|
||||
New orientation from rotation and lattice.
|
||||
|
||||
Parameters
|
||||
----------
|
||||
rotation : Rotation
|
||||
Rotation specifying the lattice orientation.
|
||||
lattice : Lattice
|
||||
Lattice type of the crystal.
|
||||
Parameters
|
||||
----------
|
||||
rotation : Rotation
|
||||
Rotation specifying the lattice orientation.
|
||||
lattice : Lattice
|
||||
Lattice type of the crystal.
|
||||
|
||||
"""
|
||||
if isinstance(lattice, Lattice):
|
||||
self.lattice = lattice
|
||||
else:
|
||||
self.lattice = Lattice(lattice) # assume string
|
||||
"""
|
||||
if isinstance(lattice, Lattice):
|
||||
self.lattice = lattice
|
||||
else:
|
||||
self.lattice = Lattice(lattice) # assume string
|
||||
|
||||
if isinstance(rotation, Rotation):
|
||||
self.rotation = rotation
|
||||
else:
|
||||
self.rotation = Rotation.fromQuaternion(rotation) # assume quaternion
|
||||
if isinstance(rotation, Rotation):
|
||||
self.rotation = rotation
|
||||
else:
|
||||
self.rotation = Rotation.fromQuaternion(rotation) # assume quaternion
|
||||
|
||||
def disorientation(self,
|
||||
other,
|
||||
SST = True,
|
||||
symmetries = False):
|
||||
"""
|
||||
Disorientation between myself and given other orientation.
|
||||
def disorientation(self,
|
||||
other,
|
||||
SST = True,
|
||||
symmetries = False):
|
||||
"""
|
||||
Disorientation between myself and given other orientation.
|
||||
|
||||
Rotation axis falls into SST if SST == True.
|
||||
(Currently requires same symmetry for both orientations.
|
||||
Look into A. Heinz and P. Neumann 1991 for cases with differing sym.)
|
||||
"""
|
||||
if self.lattice.symmetry != other.lattice.symmetry:
|
||||
raise NotImplementedError('disorientation between different symmetry classes not supported yet.')
|
||||
Rotation axis falls into SST if SST == True.
|
||||
(Currently requires same symmetry for both orientations.
|
||||
Look into A. Heinz and P. Neumann 1991 for cases with differing sym.)
|
||||
"""
|
||||
if self.lattice.symmetry != other.lattice.symmetry:
|
||||
raise NotImplementedError('disorientation between different symmetry classes not supported yet.')
|
||||
|
||||
mySymEqs = self.equivalentOrientations() if SST else self.equivalentOrientations([0]) # take all or only first sym operation
|
||||
otherSymEqs = other.equivalentOrientations()
|
||||
mySymEqs = self.equivalentOrientations() if SST else self.equivalentOrientations([0]) # take all or only first sym operation
|
||||
otherSymEqs = other.equivalentOrientations()
|
||||
|
||||
for i,sA in enumerate(mySymEqs):
|
||||
aInv = sA.rotation.inversed()
|
||||
for j,sB in enumerate(otherSymEqs):
|
||||
b = sB.rotation
|
||||
r = b*aInv
|
||||
for k in range(2):
|
||||
r.inverse()
|
||||
breaker = self.lattice.symmetry.inFZ(r.asRodrigues(vector=True)) \
|
||||
and (not SST or other.lattice.symmetry.inDisorientationSST(r.asRodrigues(vector=True)))
|
||||
if breaker: break
|
||||
if breaker: break
|
||||
if breaker: break
|
||||
for i,sA in enumerate(mySymEqs):
|
||||
aInv = sA.rotation.inversed()
|
||||
for j,sB in enumerate(otherSymEqs):
|
||||
b = sB.rotation
|
||||
r = b*aInv
|
||||
for k in range(2):
|
||||
r.inverse()
|
||||
breaker = self.lattice.symmetry.inFZ(r.asRodrigues(vector=True)) \
|
||||
and (not SST or other.lattice.symmetry.inDisorientationSST(r.asRodrigues(vector=True)))
|
||||
if breaker: break
|
||||
if breaker: break
|
||||
if breaker: break
|
||||
|
||||
return (Orientation(r,self.lattice), i,j, k == 1) if symmetries else r # disorientation ...
|
||||
return (Orientation(r,self.lattice), i,j, k == 1) if symmetries else r # disorientation ...
|
||||
# ... own sym, other sym,
|
||||
# self-->other: True, self<--other: False
|
||||
def inFZ(self):
|
||||
return self.lattice.symmetry.inFZ(self.rotation.asRodrigues(vector=True))
|
||||
def inFZ(self):
|
||||
return self.lattice.symmetry.inFZ(self.rotation.asRodrigues(vector=True))
|
||||
|
||||
|
||||
def equivalentOrientations(self,members=[]):
|
||||
"""List of orientations which are symmetrically equivalent."""
|
||||
try:
|
||||
iter(members) # asking for (even empty) list of members?
|
||||
except TypeError:
|
||||
return self.__class__(self.lattice.symmetry.symmetryOperations(members)*self.rotation,self.lattice) # no, return rotation object
|
||||
else:
|
||||
return [self.__class__(q*self.rotation,self.lattice) \
|
||||
for q in self.lattice.symmetry.symmetryOperations(members)] # yes, return list of rotations
|
||||
def equivalentOrientations(self,members=[]):
|
||||
"""List of orientations which are symmetrically equivalent."""
|
||||
try:
|
||||
iter(members) # asking for (even empty) list of members?
|
||||
except TypeError:
|
||||
return self.__class__(self.lattice.symmetry.symmetryOperations(members)*self.rotation,self.lattice) # no, return rotation object
|
||||
else:
|
||||
return [self.__class__(q*self.rotation,self.lattice) \
|
||||
for q in self.lattice.symmetry.symmetryOperations(members)] # yes, return list of rotations
|
||||
|
||||
def relatedOrientations(self,model):
|
||||
"""List of orientations related by the given orientation relationship."""
|
||||
r = self.lattice.relationOperations(model)
|
||||
return [self.__class__(o*self.rotation,r['lattice']) for o in r['rotations']]
|
||||
def relatedOrientations(self,model):
|
||||
"""List of orientations related by the given orientation relationship."""
|
||||
r = self.lattice.relationOperations(model)
|
||||
return [self.__class__(o*self.rotation,r['lattice']) for o in r['rotations']]
|
||||
|
||||
|
||||
def reduced(self):
|
||||
"""Transform orientation to fall into fundamental zone according to symmetry."""
|
||||
for me in self.equivalentOrientations():
|
||||
if self.lattice.symmetry.inFZ(me.rotation.asRodrigues(vector=True)): break
|
||||
def reduced(self):
|
||||
"""Transform orientation to fall into fundamental zone according to symmetry."""
|
||||
for me in self.equivalentOrientations():
|
||||
if self.lattice.symmetry.inFZ(me.rotation.asRodrigues(vector=True)): break
|
||||
|
||||
return self.__class__(me.rotation,self.lattice)
|
||||
return self.__class__(me.rotation,self.lattice)
|
||||
|
||||
|
||||
def inversePole(self,
|
||||
axis,
|
||||
proper = False,
|
||||
SST = True):
|
||||
"""Axis rotated according to orientation (using crystal symmetry to ensure location falls into SST)."""
|
||||
if SST: # pole requested to be within SST
|
||||
for i,o in enumerate(self.equivalentOrientations()): # test all symmetric equivalent quaternions
|
||||
pole = o.rotation*axis # align crystal direction to axis
|
||||
if self.lattice.symmetry.inSST(pole,proper): break # found SST version
|
||||
else:
|
||||
pole = self.rotation*axis # align crystal direction to axis
|
||||
def inversePole(self,
|
||||
axis,
|
||||
proper = False,
|
||||
SST = True):
|
||||
"""Axis rotated according to orientation (using crystal symmetry to ensure location falls into SST)."""
|
||||
if SST: # pole requested to be within SST
|
||||
for i,o in enumerate(self.equivalentOrientations()): # test all symmetric equivalent quaternions
|
||||
pole = o.rotation*axis # align crystal direction to axis
|
||||
if self.lattice.symmetry.inSST(pole,proper): break # found SST version
|
||||
else:
|
||||
pole = self.rotation*axis # align crystal direction to axis
|
||||
|
||||
return (pole,i if SST else 0)
|
||||
return (pole,i if SST else 0)
|
||||
|
||||
|
||||
def IPFcolor(self,axis):
|
||||
"""TSL color of inverse pole figure for given axis."""
|
||||
color = np.zeros(3,'d')
|
||||
def IPFcolor(self,axis):
|
||||
"""TSL color of inverse pole figure for given axis."""
|
||||
color = np.zeros(3,'d')
|
||||
|
||||
for o in self.equivalentOrientations():
|
||||
pole = o.rotation*axis # align crystal direction to axis
|
||||
inSST,color = self.lattice.symmetry.inSST(pole,color=True)
|
||||
if inSST: break
|
||||
for o in self.equivalentOrientations():
|
||||
pole = o.rotation*axis # align crystal direction to axis
|
||||
inSST,color = self.lattice.symmetry.inSST(pole,color=True)
|
||||
if inSST: break
|
||||
|
||||
return color
|
||||
return color
|
||||
|
||||
|
||||
@staticmethod
|
||||
def fromAverage(orientations,
|
||||
weights = []):
|
||||
"""Create orientation from average of list of orientations."""
|
||||
if not all(isinstance(item, Orientation) for item in orientations):
|
||||
raise TypeError("Only instances of Orientation can be averaged.")
|
||||
@staticmethod
|
||||
def fromAverage(orientations,
|
||||
weights = []):
|
||||
"""Create orientation from average of list of orientations."""
|
||||
if not all(isinstance(item, Orientation) for item in orientations):
|
||||
raise TypeError("Only instances of Orientation can be averaged.")
|
||||
|
||||
closest = []
|
||||
ref = orientations[0]
|
||||
for o in orientations:
|
||||
closest.append(o.equivalentOrientations(
|
||||
ref.disorientation(o,
|
||||
SST = False, # select (o[ther]'s) sym orientation
|
||||
symmetries = True)[2]).rotation) # with lowest misorientation
|
||||
closest = []
|
||||
ref = orientations[0]
|
||||
for o in orientations:
|
||||
closest.append(o.equivalentOrientations(
|
||||
ref.disorientation(o,
|
||||
SST = False, # select (o[ther]'s) sym orientation
|
||||
symmetries = True)[2]).rotation) # with lowest misorientation
|
||||
|
||||
return Orientation(Rotation.fromAverage(closest,weights),ref.lattice)
|
||||
return Orientation(Rotation.fromAverage(closest,weights),ref.lattice)
|
||||
|
||||
|
||||
def average(self,other):
|
||||
"""Calculate the average rotation."""
|
||||
return Orientation.fromAverage([self,other])
|
||||
def average(self,other):
|
||||
"""Calculate the average rotation."""
|
||||
return Orientation.fromAverage([self,other])
|
||||
|
|
|
|||
|
|
@ -65,7 +65,7 @@ class Result:
|
|||
self.materialpoints = [m.decode() for m in np.unique(f['mapping/cellResults/materialpoint']['Name'])]
|
||||
self.constituents = [c.decode() for c in np.unique(f['mapping/cellResults/constituent'] ['Name'])]
|
||||
|
||||
self.con_physics = []
|
||||
self.con_physics = []
|
||||
for c in self.constituents:
|
||||
self.con_physics += f['/'.join([self.increments[0],'constituent',c])].keys()
|
||||
self.con_physics = list(set(self.con_physics)) # make unique
|
||||
|
|
@ -75,10 +75,10 @@ class Result:
|
|||
self.mat_physics += f['/'.join([self.increments[0],'materialpoint',m])].keys()
|
||||
self.mat_physics = list(set(self.mat_physics)) # make unique
|
||||
|
||||
self.selection= {'increments': self.increments,
|
||||
'constituents': self.constituents,'materialpoints': self.materialpoints,
|
||||
'con_physics': self.con_physics, 'mat_physics': self.mat_physics
|
||||
}
|
||||
self.selection = {'increments': self.increments,
|
||||
'constituents': self.constituents,'materialpoints': self.materialpoints,
|
||||
'con_physics': self.con_physics, 'mat_physics': self.mat_physics
|
||||
}
|
||||
|
||||
self.fname = fname
|
||||
|
||||
|
|
@ -129,7 +129,7 @@ class Result:
|
|||
iterator = map(float,choice)
|
||||
choice = []
|
||||
for c in iterator:
|
||||
idx=np.searchsorted(self.times,c)
|
||||
idx = np.searchsorted(self.times,c)
|
||||
if np.isclose(c,self.times[idx]):
|
||||
choice.append(self.increments[idx])
|
||||
elif np.isclose(c,self.times[idx+1]):
|
||||
|
|
@ -141,12 +141,12 @@ class Result:
|
|||
if action == 'set':
|
||||
self.selection[what] = valid
|
||||
elif action == 'add':
|
||||
add=existing.union(valid)
|
||||
add_sorted=sorted(add, key=lambda x: int("".join([i for i in x if i.isdigit()])))
|
||||
add = existing.union(valid)
|
||||
add_sorted = sorted(add, key=lambda x: int("".join([i for i in x if i.isdigit()])))
|
||||
self.selection[what] = add_sorted
|
||||
elif action == 'del':
|
||||
diff=existing.difference(valid)
|
||||
diff_sorted=sorted(diff, key=lambda x: int("".join([i for i in x if i.isdigit()])))
|
||||
diff = existing.difference(valid)
|
||||
diff_sorted = sorted(diff, key=lambda x: int("".join([i for i in x if i.isdigit()])))
|
||||
self.selection[what] = diff_sorted
|
||||
|
||||
|
||||
|
|
@ -287,8 +287,8 @@ class Result:
|
|||
inData[key] = f['mapping/cellResults/materialpoint'][inGeom[key].tolist()]['Position']
|
||||
shape = np.shape(f[path])
|
||||
data = np.full((self.Nmaterialpoints,) + (shape[1:] if len(shape)>1 else (1,)),
|
||||
np.nan,
|
||||
dtype=np.dtype(f[path]))
|
||||
np.nan,
|
||||
dtype=np.dtype(f[path]))
|
||||
data[inGeom[key]] = (f[path] if len(shape)>1 else np.expand_dims(f[path],1))[inData[key]]
|
||||
path = (os.path.join(*([prop,name]+([cat] if cat else [])+([item] if item else []))) if split else path)+tag
|
||||
if split:
|
||||
|
|
@ -350,7 +350,7 @@ class Result:
|
|||
groups.append(group)
|
||||
else:
|
||||
match = [e for e_ in [glob.fnmatch.filter(f[group].keys(),s) for s in sets] for e in e_]
|
||||
if len(set(match)) == len(sets) : groups.append(group)
|
||||
if len(set(match)) == len(sets): groups.append(group)
|
||||
return groups
|
||||
|
||||
|
||||
|
|
@ -359,18 +359,18 @@ class Result:
|
|||
message = ''
|
||||
with h5py.File(self.fname,'r') as f:
|
||||
for i in self.iterate('increments'):
|
||||
message+='\n{} ({}s)\n'.format(i,self.times[self.increments.index(i)])
|
||||
message += '\n{} ({}s)\n'.format(i,self.times[self.increments.index(i)])
|
||||
for o,p in zip(['constituents','materialpoints'],['con_physics','mat_physics']):
|
||||
for oo in self.iterate(o):
|
||||
message+=' {}\n'.format(oo)
|
||||
message += ' {}\n'.format(oo)
|
||||
for pp in self.iterate(p):
|
||||
message+=' {}\n'.format(pp)
|
||||
message += ' {}\n'.format(pp)
|
||||
group = '/'.join([i,o[:-1],oo,pp]) # o[:-1]: plural/singular issue
|
||||
for d in f[group].keys():
|
||||
try:
|
||||
dataset = f['/'.join([group,d])]
|
||||
message+=' {} / ({}): {}\n'.\
|
||||
format(d,dataset.attrs['Unit'].decode(),dataset.attrs['Description'].decode())
|
||||
message += ' {} / ({}): {}\n'.\
|
||||
format(d,dataset.attrs['Unit'].decode(),dataset.attrs['Description'].decode())
|
||||
except KeyError:
|
||||
pass
|
||||
return message
|
||||
|
|
@ -425,7 +425,7 @@ class Result:
|
|||
for pa in path:
|
||||
label = pa.split('/')[2]
|
||||
|
||||
if (pa.split('/')[1] == 'geometry'):
|
||||
if pa.split('/')[1] == 'geometry':
|
||||
dataset = np.array(f[pa])
|
||||
continue
|
||||
|
||||
|
|
|
|||
|
|
@ -365,8 +365,7 @@ class Rotation:
|
|||
|
||||
|
||||
@staticmethod
|
||||
def fromAverage(rotations,
|
||||
weights = []):
|
||||
def fromAverage(rotations,weights = None):
|
||||
"""
|
||||
Average rotation.
|
||||
|
||||
|
|
@ -387,7 +386,7 @@ class Rotation:
|
|||
raise TypeError("Only instances of Rotation can be averaged.")
|
||||
|
||||
N = len(rotations)
|
||||
if weights == [] or not weights:
|
||||
if not weights:
|
||||
weights = np.ones(N,dtype='i')
|
||||
|
||||
for i,(r,n) in enumerate(zip(rotations,weights)):
|
||||
|
|
|
|||
|
|
@ -327,9 +327,9 @@ class Table:
|
|||
seen = set()
|
||||
labels = []
|
||||
for l in [x for x in self.data.columns if not (x in seen or seen.add(x))]:
|
||||
if(self.shapes[l] == (1,)):
|
||||
if self.shapes[l] == (1,):
|
||||
labels.append('{}'.format(l))
|
||||
elif(len(self.shapes[l]) == 1):
|
||||
elif len(self.shapes[l]) == 1:
|
||||
labels += ['{}_{}'.format(i+1,l) \
|
||||
for i in range(self.shapes[l][0])]
|
||||
else:
|
||||
|
|
|
|||
|
|
@ -103,7 +103,7 @@ class VTK:
|
|||
Spatial position of the points.
|
||||
|
||||
"""
|
||||
vtk_points= vtk.vtkPoints()
|
||||
vtk_points = vtk.vtkPoints()
|
||||
vtk_points.SetData(np_to_vtk(points))
|
||||
|
||||
geom = vtk.vtkPolyData()
|
||||
|
|
@ -168,11 +168,11 @@ class VTK:
|
|||
Filename for writing.
|
||||
|
||||
"""
|
||||
if (isinstance(self.geom,vtk.vtkRectilinearGrid)):
|
||||
if isinstance(self.geom,vtk.vtkRectilinearGrid):
|
||||
writer = vtk.vtkXMLRectilinearGridWriter()
|
||||
elif(isinstance(self.geom,vtk.vtkUnstructuredGrid)):
|
||||
elif isinstance(self.geom,vtk.vtkUnstructuredGrid):
|
||||
writer = vtk.vtkXMLUnstructuredGridWriter()
|
||||
elif(isinstance(self.geom,vtk.vtkPolyData)):
|
||||
elif isinstance(self.geom,vtk.vtkPolyData):
|
||||
writer = vtk.vtkXMLPolyDataWriter()
|
||||
|
||||
default_ext = writer.GetDefaultFileExtension()
|
||||
|
|
@ -234,17 +234,17 @@ class VTK:
|
|||
|
||||
ren = vtk.vtkRenderer()
|
||||
|
||||
renWin = vtk.vtkRenderWindow()
|
||||
renWin.AddRenderer(ren)
|
||||
window = vtk.vtkRenderWindow()
|
||||
window.AddRenderer(ren)
|
||||
|
||||
ren.AddActor(actor)
|
||||
ren.SetBackground(0.2,0.2,0.2)
|
||||
|
||||
renWin.SetSize(Environment().screen_width,Environment().screen_height)
|
||||
window.SetSize(Environment().screen_width,Environment().screen_height)
|
||||
|
||||
iren = vtk.vtkRenderWindowInteractor()
|
||||
iren.SetRenderWindow(renWin)
|
||||
iren.SetRenderWindow(window)
|
||||
|
||||
iren.Initialize()
|
||||
renWin.Render()
|
||||
window.Render()
|
||||
iren.Start()
|
||||
|
|
|
|||
Loading…
Reference in New Issue