3977e230b3
documenting and ensuring consistent argument names
...
'name' for a dataset matches the analogy to a file name
2021-04-24 14:47:45 +02:00
4d67c85a33
clarify out-of-place behavior and document return values
2021-04-23 23:32:09 +02:00
26f37d822d
state return value
...
not for Rotation as its docstring is extended by Orientation
2021-04-23 19:15:11 +02:00
6699f2ee5f
don't use shell variables
...
Marc solver can be controlled in python, installation can be tuned with
CLI arguments
2021-04-22 12:02:53 +02:00
3f8bd645d8
handle the case that MSC-related variables are not set
2021-04-22 07:55:41 +02:00
190ddafa44
don't support old file formats
2021-04-14 23:23:32 +02:00
0e6cb127df
damage can be defined in parts of the domain ...
2021-04-14 19:24:45 +02:00
1be1a72a09
Merge branch 'Fortran-cleaning' into 'development'
...
Clarifying structure
See merge request damask/DAMASK!368
2021-04-13 11:08:18 +00:00
cfbb2d416f
better example
2021-04-10 23:58:53 +02:00
1133090b6c
logfile does not contain much valuable information
...
Marc automatically creates .out
2021-04-10 23:50:20 +02:00
37df78a8e0
don't show progress bar for empty iterations
2021-04-10 15:01:50 +02:00
d304654972
allow easy detection of empty view/get/place
2021-04-10 09:33:45 +02:00
07d573a56d
more helpful dataset descriptors
...
phase label for single phase material not helpful
2021-04-10 09:32:21 +02:00
44331c504b
__class__ is unknown (says prospector)
2021-04-10 08:29:42 +02:00
63b343ad87
Merge branch 'development' into allclose-rotation-orientation
2021-04-10 08:05:25 +02:00
e89236b14d
bugfix:
...
don't overwrite data when doing a 'place-like' operation to merge
datasets
2021-04-08 17:36:33 +02:00
2d8658822d
report return value
2021-04-08 14:58:22 +02:00
00aed99419
naming of tests should follow naming in class
2021-04-08 13:39:48 +02:00
bc1454970c
mandatory symmetry
...
if symmetry is not of interest, damask.Rotation should be used
2021-04-06 22:49:08 +02:00
bf2515c4c1
removed `Grid.diff` in lieu of `__eq__`
2021-04-06 12:10:35 -04:00
bf4c88a39e
renamed result.read to get; polishing
2021-04-06 11:39:44 -04:00
02277fb820
consistently return masked array
2021-04-05 22:18:18 +02:00
d5806075d4
distinguish isclose/allclose and __eq__
2021-04-05 22:15:03 +02:00
115e3dd4c7
simplified
2021-04-05 17:18:12 +02:00
faa9e6aa6a
open file only once
2021-04-05 15:58:10 +02:00
c3a7a85f7a
avoid repetition
2021-04-05 15:41:28 +02:00
9db1ef9ed7
polishing
2021-04-05 13:41:49 +02:00
65b03aeb2d
Merge remote-tracking branch 'origin/development' into Results.read-.place
2021-04-05 10:22:49 +02:00
62c85db745
out of place behavior
2021-04-05 08:03:00 +02:00
fc409fcf08
'join' is always linear in time, '+' not
2021-04-04 22:12:28 +02:00
1d6b56346a
use 'view' and standardized calling signature
2021-04-04 20:56:30 +02:00
0e5f693fea
untangling
2021-04-04 19:44:06 +02:00
e1d57f176d
simplifying
...
[] has a special meaning for glob, use () to indicate direction for IPF
color. It is anyways the sample direction, not a crystallographic
direction
2021-04-04 19:05:58 +02:00
d78e0085fc
simplified
2021-04-04 18:32:17 +02:00
a962777d24
avoid code duplication
2021-04-04 13:38:40 +02:00
6fef46539e
standard names
2021-04-04 13:16:14 +02:00
6f3dc80079
simplified/using new functionality
2021-04-03 16:32:48 +02:00
27f2e3b26e
avoid random order when using sets
2021-04-03 12:21:06 +02:00
885aeb62e5
geometry0 itself is useful
...
can be combined with 'place' if in-memory VTK is required for spatial
operations
2021-04-03 08:58:22 +02:00
39c0bc9de6
polishing
2021-04-03 08:19:16 +02:00
1b2d892b42
keep reference folder clean
2021-04-03 07:31:31 +02:00
20d0242d59
using new logic
2021-04-02 12:21:27 +02:00
e8ff509502
output all datasets per default
...
respect 'field' selection
2021-04-02 11:29:58 +02:00
18afa217fe
easier to understand
...
limit to same fields for homogenization and fields results in a little
less flexibility (requires two views) but should be acceptable for such
a little used feature
2021-04-02 08:24:49 +02:00
cf1ce6a1fe
support for masked array
...
masked arrays are the outcome of Result.place
2021-04-02 08:07:22 +02:00
58ac99831c
polishing
2021-04-02 07:47:03 +02:00
9459fea929
support for pandas not planned any more
...
damask.Table supports multidimensional data, numpy.ma supports masked
arrays
2021-04-02 07:42:54 +02:00
f6d6aefe1d
function renaming; rewording of help messages
2021-04-01 18:41:28 -04:00
84e117c6b3
polished and added tests
2021-04-01 17:26:51 +02:00
71d1a341e4
simplified
2021-04-01 15:08:48 +02:00
4b9fcf2f77
testing new read functionality
2021-04-01 14:55:50 +02:00
85aaaa96f3
new tests
2021-04-01 10:47:45 +02:00
2397df88f9
documenting
2021-04-01 07:21:34 +02:00
c1f7ea750b
legacy access not needed anymore
2021-04-01 06:55:47 +02:00
8a3af87e3e
Merge remote-tracking branch 'origin/development' into spring-cleaning
2021-04-01 00:09:51 +02:00
07c9cf5f1a
- improved reporting and slicing of table.
...
- implemented numpy-like `allclose` and `isclose`
2021-03-31 18:30:07 +00:00
8a8a28adc4
support multi-constituents
2021-03-31 20:02:25 +02:00
be444b69ca
include homogenization
2021-03-31 15:44:27 +02:00
97e6c397d9
cleaned
2021-03-31 15:10:39 +02:00
7b678af1b4
float and int are different
2021-03-31 12:40:53 +02:00
8c7ee5e796
simplified
2021-03-31 12:05:51 +02:00
e9c65dee73
documenting and testing
2021-03-31 10:59:21 +02:00
7b846efe4a
arguments can be int, bool, str
2021-03-31 08:12:57 +02:00
eebb050a64
simplified
...
place seems to work
2021-03-31 07:56:42 +02:00
60119c1300
return minimal unique dictionaries per default
2021-03-30 21:39:14 +02:00
989992004d
cleaning dicts
2021-03-30 19:41:36 +02:00
7865092b82
not needed
2021-03-30 17:24:19 +02:00
b9b66fac45
simplified
2021-03-30 17:15:02 +02:00
d1af4b031a
source for python-compatible versioning
2021-03-30 17:02:57 +02:00
b19ec4f8ae
first ideas for more user friendly usage
2021-03-30 07:24:47 +02:00
3fe1accf18
not used anymore
2021-03-28 19:48:44 +02:00
5ea2fa97a0
untested and unused code
2021-03-28 12:46:26 +02:00
a587e70704
split into small sections and test damage
2021-03-28 12:08:08 +02:00
a3ab890315
bugfix for ConfigMaterial
...
don't use mutable variables in python initializers, they get updated
2021-03-28 11:35:40 +02:00
480b8315a7
cleaning + testing
2021-03-27 15:54:29 +01:00
8a99306aed
old table not needed anymore
2021-03-27 14:34:18 +01:00
c742f7c9d0
need to cope with _asciitable.py and _test.py
2021-03-27 12:47:58 +01:00
be9e00347b
cleaning
...
dropped support for legacy table
2021-03-27 10:11:31 +01:00
111a1a76c6
cleaning
2021-03-27 07:35:49 +01:00
9fd244d8a0
cleaning
2021-03-26 20:59:49 +01:00
3e8bcd3225
cleaning examples, using consistent names
...
- examples in repository should only show the most basic steps
- MSC.Marc, marc => Marc
2021-03-26 09:27:49 +01:00
9e9eb391ba
handle floating point errors
2021-03-25 22:33:14 +01:00
a72e2db678
Merge branch 'development' into output-rename
2021-03-25 21:03:20 +01:00
3d4590a522
Merge branch 'citation-style' into development
2021-03-25 14:39:44 -04:00
0e57135239
[skip ci] dx.doi.org --> doi.org
2021-03-25 14:33:08 -04:00
3b392281e4
consistent naming in HDF5 output
2021-03-25 19:22:59 +01:00
fe0cd8e5e2
transparently handle orientations/rotations
2021-03-25 15:30:31 +01:00
1ff6a09746
tests/specifications
2021-03-23 18:51:21 +01:00
572c3204d0
let the computer do the work
2021-03-23 14:28:56 +01:00
e0e088eaa8
EBSD dataset for testing
...
use only non-segmented data. Automatically fall back to numeric phase
names if cell_ensemble_data is not found
2021-03-23 13:42:04 +01:00
549b849730
better readable
2021-03-23 12:05:08 +01:00
926b5c657d
material_add can do expansion
2021-03-23 12:01:35 +01:00
005fde2504
homogenization in material was missing
2021-03-23 11:48:35 +01:00
7012099d0c
substituted broken link
2021-03-20 14:34:14 +01:00
1c3d1ee0f2
documented
2021-03-20 13:37:06 +01:00
394fda5f37
improving import from DREAM.3D
...
- no duplicated entries even for non-segmented data
- using phase labels from file
- material.yaml: Dummy homogenization and phase
- tests to ensure correct order and match between Grid and
ConfigMaterial
2021-03-20 12:56:18 +01:00
cdcedd0d44
autodetect base group
2021-03-20 07:26:07 +01:00
35c5bfcc45
reference files for DREAM.3D operations
...
will be used for the configuration of material.yaml and grid (using
symbolic links)
2021-03-19 11:45:04 +01:00
fc172921fb
unified citation style continued
2021-03-19 10:41:47 +01:00
07d79ef4ba
unifying style
2021-03-17 11:25:21 +01:00
ec28fd8a73
polishing
2021-03-12 09:23:05 +01:00
3b27c64709
Merge remote-tracking branch 'origin/development' into config_from_dream3D
2021-03-12 08:11:54 +01:00
e2d4ab427e
explicit path joining with "/" in _result; updated cpTi CRSS
2021-03-09 22:02:49 -05:00
a26e586b14
More general 'delete' (accepts iterables) and backports of '|' and '|=' for union/add.
...
'|=' would work for python 3.9 without extra code, but '|' unfortunately casts 'damask.Config' (subclass of 'dict') to a 'dict'.
2021-03-09 19:15:15 +00:00
4208c4e713
adapted to Table.add being out-of-place
2021-03-08 11:04:49 -05:00
7cbc69a4ca
added "Returns" to help
2021-03-08 11:02:27 -05:00
109ad378c2
corrected help text of as_Rodrigues_vector
2021-03-02 16:26:18 +01:00
7b89cb41f9
Merge branch 'dislotwin-correction' into 'development'
...
dislotwin-correction
See merge request damask/DAMASK!347
2021-02-28 19:45:34 +00:00
464c62e7e7
abandoned integer aliases for projection directions
2021-02-28 12:47:13 +01:00
175d724ded
added keepdims=False option to project_stereographic
2021-02-27 18:38:40 -05:00
ea763fd941
generalized stereographic projection to cope with all three directions (x,y,Z)
2021-02-27 11:15:01 -05:00
bf223e8e00
helpful reporting in case of errors
2021-02-26 06:35:42 +01:00
1d62341811
Fixed missing second-to-last entry in representation list. Polished help texts.
2021-02-26 03:20:28 +01:00
c0e488881e
converted two examples to yaml
2021-02-24 20:13:55 +01:00
2549d7a05a
[skip ci] removed debug print statement
2021-02-24 15:50:06 +01:00
2dea705fa9
polishing/shortening
2021-02-23 19:01:10 -05:00
0b08b3d233
expanded help texts
2021-02-23 18:54:55 -05:00
dcc42204ec
expanded help on material_add
2021-02-23 18:40:32 -05:00
69316f186b
fixed ConfigMaterial.from_table; 2D grid.from_table now acceptable
2021-02-23 11:50:13 -05:00
4a00254dba
shortened material_add and allow for multi-constituent; broken from_table...
2021-02-22 22:47:08 -05:00
0461c404f7
numpy uses __array__ for casting
...
avoids infinite loop of __init__, __getitem__, and shape. Found on
8cf07f6113
2021-02-22 18:52:06 +01:00
5517be5078
warn the caller of deprecated functions
2021-02-22 08:49:44 +01:00
67f0ab2ce8
silence deprecation warning
2021-02-22 08:46:28 +01:00
b00b4bb0ad
more general handling of precision
...
Anaconda on windows does not have np.float128 defined, but aliases
should work
https://numpy.org/devdocs/user/basics.types.html
2021-02-19 17:03:41 +01:00
f5f993435b
make intention clear
2021-02-19 16:34:28 +01:00
ab9661d951
don't see how ':=' should help here
2021-02-19 07:04:34 +01:00
7c6ce525a3
ask for minimum version
2021-02-19 06:51:32 +01:00
f609b61157
Merge branch 'development' into account-for-floating-point-precision-in-orientation
2021-02-15 16:26:25 -05:00
6bbd55d967
exchanged c for x in from_cubochoric
2021-02-15 16:25:36 -05:00
002cfbd085
Merge branch 'account-for-floating-point-precision-in-orientation' into 'development'
...
ensures that at least one orientation in the FZ is found
See merge request damask/DAMASK!337
2021-02-15 20:53:37 +00:00
89e8ca4535
renamed and shortened _separate_arguments()
2021-02-15 11:22:42 -05:00
099cd90890
Merge remote-tracking branch 'origin/development' into python-improvements
2021-02-13 16:51:29 +01:00
fe63adcca4
mimic python error message and ensure that error is raised
2021-02-12 18:20:39 +01:00
9e8a243d6f
avoid name conflict with lattice parameter 'c'
2021-02-12 12:15:08 +01:00
f1b8978e21
accept variables that will be used
...
**kwargs allowed the use of extraneous arguments
2021-02-12 11:24:12 +01:00
958936c449
Merge branch 'development' into polishing-for-release
2021-02-11 21:59:59 +01:00
e8fae6b2a7
simplified
2021-02-11 21:56:53 +01:00
4e31862f0f
avoid repetition
2021-02-10 18:35:13 +01:00
6895ef6b18
always write LF line endings
...
small pitfall: I windows users use a filehandle that results from a call
to open() without the newline option, they get still CRLF line endings
2021-02-10 10:03:35 +01:00
4bcbcb34d0
ensures that at least one orientation in the FZ is found
2021-02-09 23:58:00 +01:00
869307c5ec
temperature not needed for pure mechanics
...
would also require to define thermal homogenization
2021-02-08 22:56:37 +01:00
cab5a5cec7
homogenization 'none' name misleading.
2021-02-04 15:37:40 +01:00
14ce127dc4
fraction --> v
2021-02-04 13:46:01 +01:00
051e3ed0ae
not needed anymore
2021-02-02 12:26:08 +01:00
0f6094890a
simplified
...
damask.environment does not offer any advantage over os.environ for
variables. After 'root_dir' was removed, the whole module became
obsolete
2021-01-15 12:14:05 +01:00
37de561938
shell variables are more robust
...
they will also work if Fortran and python code are installed in
different locations.
2021-01-13 18:53:16 +01:00
d76543f759
better name
2021-01-13 14:57:58 +01:00
a7d998dd48
standard name
2021-01-13 14:53:50 +01:00
4c35da8627
simplified
2021-01-13 11:33:28 +01:00
196902948f
simplified
2021-01-13 09:54:04 +01:00
f4247e0f35
simpler (and scipy compatible)
2021-01-13 09:35:42 +01:00
2d6e6a2370
Rotation composition uses "*"; application of Rotation to object uses "@"; "apply()" works on both
2021-01-12 18:57:33 -05:00
c3c4b05c01
handling point based data enabled
2021-01-12 13:01:11 +01:00
6bffb91951
Added example
2021-01-11 15:16:46 +01:00
6c367ec010
conform to docstring conventions
2021-01-11 15:05:48 +01:00
2951617e28
able to take phaseID into account
2021-01-11 15:02:15 +01:00
dbab3c3a83
dream3D has an extra row at start for grain based data
2021-01-11 14:21:56 +01:00
028d47034d
conversion from dream3D for single phase materials
2021-01-11 13:31:08 +01:00
f0351e403a
removed duplicate test
2021-01-07 11:01:15 -05:00
bde66d85fc
Merge branch 'development' into python-improvements
2021-01-07 10:58:33 -05:00
94cfe28128
polishing help; Rotation.apply(Rotation) now acceptable.
2021-01-06 18:03:10 -05:00
acbb564afc
restored functionalitity for adding list.
...
got accidently lost
2021-01-04 07:23:14 +01:00
d8b4b7e0f5
!= and == work componentwise
2021-01-03 21:52:19 +01:00
f48a446353
compatible with scipy.spatial.transform.Rotation
...
also introduced inplace variants and '/' as multiplicative inverse of
'*'
2021-01-03 16:08:22 +01:00
98723cb0ed
need to handle special case of Re() = 0
...
ensuring that the real part is positive seems to be a good idea on first
sight, but it would be easier to simply acknowledge that qu = -qu
2021-01-03 15:50:15 +01:00
80b8693a66
avoid adding to existing data, i.e. when reading a file
2021-01-03 12:10:39 +01:00
5f1399acc3
consistent behavior with other classes
...
python dictionary operates in-place, so wrappers for out-of-place
behavior let it use like the other DAMASK classes
2021-01-03 12:09:21 +01:00
9a278daa3f
copy not needed
...
YAML writer does not write out references anymore
2021-01-03 12:07:02 +01:00
35ca1ffb0a
consistent copy functionality
2021-01-03 12:03:40 +01:00
6fe1ff8e39
fixed test for rodrigues parametrization
...
for angle close to 180deg, the sign of the axis does not matter
2021-01-03 11:50:45 +01:00
da62daf15d
added test for appending rotation lists; better check for type==list
2020-12-28 12:26:09 -05:00
4796afdd92
fix for broken representation of no-rotation orientations and averaging weights
2020-12-28 12:10:21 -05:00
d8b57680ec
raise NotImplemented when using R*b instead of R@b
2020-12-21 15:47:18 -05:00
6cc78cb41e
Merge branch 'misc-improvements' into 'development'
...
Misc improvements
See merge request damask/DAMASK!302
2020-12-18 15:19:04 +01:00
35f9861818
Fortran standard is 2018
...
will not work for older compilers
2020-12-18 15:19:04 +01:00
5fb0e4908b
Examples reflect actual behavior
2020-12-18 07:09:05 +01:00
403ac693da
need to pass init argument to dict superclass
2020-12-17 18:08:55 -05:00
e11be7e600
preinitialize a ConfigMaterial object with 'constituents','homogenization','phase' keys
2020-12-17 10:49:33 -05:00
2dd520b4a2
P_aim should be independent from P_av
...
P_av is not defined after restart or cutback. Restart with change of
load case is probably still an issue
2020-12-15 08:06:50 +01:00
aad123f41b
Merge branch 'table-getitem' into development
2020-12-12 19:58:42 +01:00
36e4042f0b
removed "where" method from Table class
2020-12-11 19:31:19 -05:00
2e28bc127a
better message in case that GUI is not possible
2020-12-10 23:44:54 +01:00
a881e6e57a
Merge remote-tracking branch 'origin/development' into misc-improvements
2020-12-10 23:41:59 +01:00
32c2de6b91
Ensuring regular spacing for grid
2020-12-10 22:47:30 +01:00
4286fc3b82
Merge branch 'development' into misc-improvements
2020-12-10 20:21:00 +01:00
9b6f5ba9c6
Merge branch 'development' into compressed-hdf5
2020-12-10 00:23:22 +01:00
de1708b20a
missing renames + better help
2020-12-08 00:36:41 +01:00
78192ef3fd
clearer naming + better comments, thanks to @p.eisenlohr
2020-12-07 17:49:37 +01:00
429b84004d
more filters
...
- shuffle: significanlty better compression
- Fletcher32: checksum to detect errors
computational overhead is very small
2020-12-06 19:57:00 +01:00
52e3fb50bc
compress.
...
Datasets are chunked along first timension. Chunk size (1MB for real) is
probably not optimal
2020-12-06 11:44:52 +01:00
000de75617
write orientation as plain array, not derived type
2020-12-06 08:36:16 +01:00
c80e1c5420
less confusing in the standard case, more helpful in the special case
2020-12-05 10:47:42 +01:00
ed286ee09f
Merge branch 'rename-grid-2' into misc-improvements
2020-12-05 09:50:46 +01:00
171d642dbd
rename: Geom -> Grid
2020-12-04 07:50:47 +01:00
0fdefa5e78
renames:
...
after the rename of "grid" to "cell", the name cell should not be used
for the coordinates of the cell centers. In agreement with the names
x_p/u_p for point positions/displacements, now the "point" is used to
refer to the materialpoints (i.e. cell centers)
Additionally, "_node"/"_point" are now suffixes to
"coordinates"/"displacements".
Finally, "coords" is renamed to "coordinates"
2020-12-03 23:59:37 +01:00
ac0a20696c
rename: grid -> cells
2020-12-03 22:16:34 +01:00
ccf1a849fa
Merge branch 'ShowGrainBoundaries' into 'development'
...
Show grain boundaries
See merge request damask/DAMASK!297
2020-12-03 17:13:15 +01:00
4877334986
added getitem and where functionality to Table
2020-12-02 19:25:54 -05:00
97df1ab9b3
reinstated write functionality
2020-12-02 13:04:56 -05:00
d3a5979d25
meaningful result
2020-12-02 14:45:47 +01:00
c880052250
avoid evil eval
2020-12-02 14:37:44 +01:00
aa8f30d746
Merge branch 'development' into ShowGrainBoundaries
2020-12-02 12:50:04 +01:00
1c2cdbd5a1
support of all standard numpy types
...
+ tests
2020-11-30 12:33:21 +01:00
813ef927c4
consistent with "save_XDMF" (capitalized)
2020-11-30 09:28:46 +01:00
4d2bf37193
Merge branch 'lattice-structure-rename' into ShowGrainBoundaries
2020-11-29 20:53:58 +01:00
1d05edd7b3
fixes:
...
- need to get crystal structure as attribute in test (generic function
was removed, because the crystal structure is in general not the same
over the whole domain)
- consistent sorting of attributes
2020-11-29 09:06:47 +01:00
f48f5cb0e8
bugfix/better readable
2020-11-29 08:58:48 +01:00
c712332e87
using consistent names for Bravais lattice in Fortran and Python
2020-11-28 22:38:12 +01:00
a8da1e5ed9
Paraview 5.9 supports datasets of arbitrary length in XDMF
2020-11-27 22:57:15 +01:00
3c1f1af009
more then one direction in file
2020-11-27 20:16:06 +01:00
c2be41b9f6
remove import vtk because unused
2020-11-25 12:53:29 +01:00
31df4c04c8
added test
2020-11-25 12:51:52 +01:00
eb085958f8
polishing
2020-11-25 11:32:07 +01:00
cd58278a01
returns vtk object
2020-11-25 10:39:58 +01:00
7abc32b09c
alternative for if d_s== , not sure it improves the previous
2020-11-24 19:59:46 +01:00
c8b1f8d9f1
shortest possible way i found to include directions in an elegant way
2020-11-24 17:49:58 +01:00
030062d293
Merge branch 'unit-in-vtk' into 'development'
...
Unit in vtk
See merge request damask/DAMASK!288
2020-11-24 16:21:01 +01:00
7fa98ef084
DEcode bytes into str
2020-11-23 20:17:04 +01:00
5ab2847b36
polishing
2020-11-23 20:06:34 +01:00
cbe8160e13
Merge remote-tracking branch 'origin/development' into vector-mechanics
2020-11-23 19:55:34 +01:00
f85dba2835
small polishing
2020-11-23 19:43:19 +01:00
287d44c5df
Merge remote-tracking branch 'origin/development' into unit-in-vtk
2020-11-23 19:19:02 +01:00
7356330cf6
Merge remote-tracking branch 'origin/new_names_result' into development
2020-11-23 11:49:15 +01:00
c58f9f23a1
read old version while resolving merge conflicts
2020-11-22 14:32:32 +01:00
24fabdec22
Merge branch 'development' into vector-mechanics
2020-11-22 12:02:29 +01:00
2de3a6a205
fits better to stretch_left/right
2020-11-19 22:46:52 +01:00
a87596cefc
return rotation type (ensures proper rotation)
2020-11-19 22:36:19 +01:00
662a033d91
adapted to VTR geom files
2020-11-19 14:26:15 -05:00
a82b1adc14
Merge branch 'geom-load-ASCII-autoshift' of magit1.mpie.de:damask/DAMASK into geom-load-ASCII-autoshift
2020-11-19 12:24:09 -05:00
a4b5c2a537
shorter (but still self-explanatory) name
2020-11-19 15:20:44 +01:00
6e5cb60132
general tensor functionality
2020-11-19 15:16:01 +01:00
894a8de9f9
avoid name clash: as_Rodrigues_vector(vector = ...)
2020-11-19 14:31:14 +01:00
1c07152b96
sorted alphabetically
2020-11-19 14:05:59 +01:00
20d0732b2e
output unit to XDMF/vtk
2020-11-19 13:45:40 +01:00
af3a87b197
adjust to new auto-convert of 1-based geom files
2020-11-19 11:34:55 +01:00
5a5dd24687
removed aliases
2020-11-19 10:50:14 +01:00
903c185ee6
distinguish 'file not found' and 'invalid file'
2020-11-19 10:39:41 +01:00
c74e57f225
vtk error handling is not very helpful
2020-11-19 09:59:39 +01:00
96826dca73
Geom.load_ASCII now auto-shifts material indices
2020-11-19 09:40:19 +01:00
cb22c34db2
Geom.load_ASCII now auto-shifts material indices
2020-11-18 18:25:25 -05:00
b9b26cb2cc
output results for all constituents
2020-11-18 23:36:02 +01:00
5359e05fd3
always merge homogenization results
2020-11-18 23:17:12 +01:00
b885e38b3f
better readable
2020-11-18 22:12:23 +01:00
4bf802a28e
fixed documentation
2020-11-18 21:51:37 +01:00
843d7d8cac
Merge remote-tracking branch 'origin/development' into new_names_result
2020-11-18 21:37:52 +01:00
7352431143
vectorized
2020-11-18 20:10:04 +01:00
564ee6c96a
make uvw/hkl keyword-only arguments
...
avoid to prefer one over the other, since they are mutually exclusive
2020-11-18 16:45:53 +01:00
c60d9cde2a
merge 'mechanics' datasets
...
was like that for 'generic'. Needs detailed discussion in future
2020-11-18 15:52:55 +01:00
838a4ea592
[skip ci] fix for scalar values
2020-11-18 14:57:32 +01:00
870c0f7aca
removed aliases
...
required bump of DADF5 version
2020-11-18 14:53:11 +01:00
1c9028d0b1
simplified
2020-11-18 14:01:52 +01:00
89c748fdf1
Merge remote-tracking branch 'origin/development' into vector-mechanics
2020-11-18 13:55:05 +01:00
9a1e8e3c38
for the transition period
2020-11-18 13:28:53 +01:00
7291b95055
avoid pyflake for blank line 6 final
2020-11-18 12:29:10 +01:00
ee5822b721
avoid pyflake for blank line 5
2020-11-18 12:25:08 +01:00
4dbfad74cb
avoid pyflake for blank line 4
2020-11-18 12:24:17 +01:00
eda3837874
avoid pyflake for blank line 3
2020-11-18 12:21:09 +01:00
c681101136
avoid pyflake for blank line 2
2020-11-18 12:19:47 +01:00
33aa888fc7
avoid pyflake for blank line
2020-11-18 12:17:05 +01:00
e8f82d52cc
fix bug
2020-11-18 12:16:08 +01:00
be206d28b3
vectorized and more options
2020-11-18 12:14:12 +01:00
6bedd84759
self-explanatory names
2020-11-18 08:15:04 +01:00
cd8434b991
Merge remote-tracking branch 'origin/development' into python-improvements
2020-11-16 22:57:49 +01:00
c16ad845bc
Merge branch 'modernize-testing' into 'development'
...
Modernize testing
See merge request damask/DAMASK!280
2020-11-16 20:10:38 +01:00
a8fec922d5
show name in title
2020-11-16 17:25:13 +01:00
5a53f8743b
added to docstring
2020-11-16 10:44:33 -05:00
fa25a13264
fixed typo
2020-11-16 10:34:49 -05:00
de20e6b35d
code shortening; list_predefined() --> property "predefined"
2020-11-16 10:23:26 -05:00
5ebde607a2
einsum simplifications
2020-11-16 07:43:20 +01:00
9b9d83d93c
adding '_tensor' not needed
2020-11-16 01:15:39 +01:00
b893967b68
more systematic names and extended docstrings
2020-11-16 01:02:36 +01:00
6f81f5278d
separating general tensor math from mechanics operations
2020-11-16 00:13:34 +01:00
b3955573f6
using new tests
2020-11-15 22:39:47 +01:00
fd8743af5e
clearly distinguish seeds for tessellation and seeds for RNG
2020-11-15 13:49:17 +01:00
1541ac0add
more intuitive use
2020-11-15 12:38:54 +01:00
01d84c1477
testing also functions with graphical output
2020-11-15 11:49:52 +01:00
15af12bbb4
__ne__ is automatically set to !__eq__, __neq__ has no special meaning
2020-11-15 11:38:26 +01:00
51e5dda702
documentation + consistent string formatting
2020-11-15 10:54:20 +01:00
05c1007add
documentation improvments + acceptance of lists
...
example code at respective function, no space in 'or' variable names
(sphinx cannot handle this)
2020-11-15 10:31:01 +01:00
1eb9d494c7
not specific to Orientation class
2020-11-14 19:51:15 +01:00
149fce0a7e
increase test coverage
2020-11-14 19:42:52 +01:00
764aacf2a1
increasing test coverage
2020-11-14 17:54:47 +01:00
9eb4e2d0de
corrected handling of scalar/array arguments
...
+ more tests
+ corrected handling of numpy types
2020-11-14 17:26:38 +01:00
6529613726
Merge remote-tracking branch 'origin/development' into vector-mechanics
2020-11-14 15:10:52 +01:00
bacfe9f462
Merge branch 'fix-add_primitive-rotation' into 'development'
...
Avoids coordinate normalization _before_ rotation
See merge request damask/DAMASK!276
2020-11-13 14:11:54 +01:00
7b7b449877
testing fixed behavior
2020-11-13 06:50:57 +01:00
b3e8b85d25
normalizing coordinates _before_ rotation causes wrong primitive shape for non-cubic VEs
2020-11-12 18:34:29 -05:00
e15678e7a4
consistent handling of comments
2020-11-12 21:31:09 +01:00
8429a9d695
Merge remote-tracking branch 'origin/development' into modularize-mech
2020-11-11 07:04:23 +01:00
e90c20ccd6
Merge remote-tracking branch 'origin/geom-attributes-as-checked-properties' into development
2020-11-10 14:54:40 +01:00
5926f84851
WIP: refactoring Orientation=Symmetry+Rotation, Lattice=subclass of Sym, and Crystal=Lattice+Rotation
2020-11-09 21:20:56 +01:00
f105631015
redefined attributes material,size,origin,comments as properties; enhanced help/descriptions
2020-11-08 12:11:30 -05:00
287d56fc3d
consistent with new output names
2020-11-08 16:01:11 +01:00
7d4163e8a9
new format of material.yaml
2020-11-08 15:57:06 +01:00
03a68248b5
polishing
2020-11-06 13:25:00 +01:00
bbaeeb02da
Merge remote-tracking branch 'origin/misc-improvements' into h5py3
2020-11-06 13:19:47 +01:00
58a5d2666c
ensure correct Mises mode
2020-11-06 00:10:46 +01:00
4ccd068d3b
catch error in case of exisiting dataset
2020-11-05 23:00:56 +01:00
e649fb195f
update to use variable-length strings
2020-11-05 22:34:41 +01:00
30938a8278
correct order (brackets)
2020-11-05 21:38:00 +01:00
e26bb962c8
encode from str to bytes
2020-11-05 21:19:49 +01:00
68d384bbdd
bugfix: missing rename
2020-11-05 21:14:02 +01:00
a416f5ed5b
encode/decode for h5py3 not needed anymore
...
attribute values with variable-length strings will be interpreted as
str, not bytes
2020-11-05 16:13:29 +01:00
708c83dcf1
polishing
2020-11-05 07:15:59 +01:00
1fcf9cb721
don't compute silently the wrong von Mises kind
...
and allow the user to set it explicitly
2020-11-05 05:48:12 +01:00
7341b9830a
h5py v 3.x handles strings differently
2020-11-05 05:39:45 +01:00
01af348cd9
symmetric behavior load/save
...
default name reflects fact that material.yaml has a fixed name
2020-11-04 21:14:08 +01:00
ae959b9cc2
allow '.' in filenames
2020-11-04 18:08:04 +01:00
eaceb16203
added +1 to nanmax(material) as auto offset, now consistent with help and intention...
2020-11-03 17:43:57 -05:00
11f1f4f555
Merge branch 'modernize-testing' into development
2020-11-03 12:49:19 +01:00
2867050397
corrected shortened test logic
2020-11-02 18:31:37 -05:00
4fa44d388d
shortened test for monotonous increase of material index after sorting
2020-11-02 18:21:51 -05:00
4d4278e6dd
shortened tainted_neighborhood logic
2020-11-02 18:20:52 -05:00
cf958d32b4
Merge branch 'development' into vector-mechanics
2020-11-02 15:23:11 +01:00
be47c744d8
Merge branch 'development' into geom-sort
2020-11-02 12:26:31 +01:00
212ed62b19
pytest-based tests
...
removed unused functionality from deprecated python library modules
2020-11-02 12:07:16 +01:00
086b215d94
Merge branch 'test-new-dir' into development
2020-11-01 19:29:52 +01:00
cf18954db9
hint for future improvement
2020-11-01 19:20:52 +01:00
7059e6af6e
might not be in the last line
2020-11-01 18:34:52 +01:00
946da2379b
Merge remote-tracking branch 'origin/development' into modernize-testing
2020-11-01 10:06:52 +01:00
0a3598c338
Merge branch 'simplify-from_table' into development
2020-10-31 22:34:17 +01:00
0ebb9b611d
functionality to sort material id
...
convenient for layered materials
2020-10-31 20:46:21 +01:00
67f69fc8a5
data is consecutive
2020-10-31 17:23:58 +01:00
8224122bb9
more user friendly error handling
2020-10-31 13:16:25 +01:00
cf740a279e
combine constant with varying data
2020-10-31 09:56:43 +01:00
aecf2f539e
allow one homogenization
...
quite useless ...
2020-10-30 22:26:02 +01:00
c29e3650f3
don't squeeze into scalar
2020-10-30 22:24:27 +01:00
392803e47d
Merge remote-tracking branch 'origin/Marc_version_names' into development
2020-10-30 17:49:18 +01:00
46e5023f8b
Merge branch 'geom-improvements' into 'development'
...
Geom improvements
See merge request damask/DAMASK!264
2020-10-29 23:53:33 +01:00
b2289e80b2
simplified
2020-10-29 20:09:13 +01:00
0e499eedf3
correct rounding/clearer logic
2020-10-29 18:35:22 +01:00
4b700d367e
improved test
2020-10-29 17:59:44 +01:00
904c338b13
Reflect version underscore of installation files
2020-10-29 15:21:40 +01:00
999cf53c07
tests+fixes
2020-10-29 07:42:41 +01:00
3be0c462a8
explicit is better then implicit:
...
user should sort Table according to coordinates to create geometry. This
allows to have consistent behavior for from_table in Geom and
ConfigMaterial. We always ensure to keep the order
2020-10-29 07:25:16 +01:00
1b2cd6caf6
documentation was misleading
2020-10-28 21:53:46 +01:00
4ff99a7af4
more logical layout
2020-10-28 21:51:20 +01:00
855bf124d3
faster
...
https://stackoverflow.com/questions/16992713
2020-10-28 16:53:16 +01:00
21f095c9d8
Merge branch 'flexible-yaml-dump' into development
2020-10-28 16:19:17 +01:00
98e0ef3881
no loops
...
taken from https://stackoverflow.com/questions/3403973
2020-10-28 13:38:20 +01:00
d72343c865
keep order of unique values found in table
2020-10-28 11:56:28 +01:00
b38a498197
fast
2020-10-28 09:43:20 +01:00
5f03e8cf8f
0-based material indices
2020-10-28 09:31:55 +01:00
a5a127b787
new tests+ updated results
2020-10-27 16:46:08 +01:00
0804e6ee74
pythonic names
2020-10-27 13:50:47 +01:00
fa67a2ddf8
cell_coordinates is now a property
2020-10-27 13:35:14 +01:00
201a62d7c9
easier visualization if verts have a point-cell
2020-10-27 13:19:53 +01:00
4dd387d7f5
compatibility with old pyyaml + test for numpy
2020-10-27 06:39:58 +01:00
4159ae5f3d
keep order of keys
2020-10-26 21:44:38 +01:00
5834d95012
support for more types
...
- allow to directly use Config and its sublasses (cast to dict)
- convert numpy arrays
2020-10-26 21:38:24 +01:00
802e09be4f
python/damask/_geom.py exceeds line length limit (maximum line length 143 > 132)
2020-10-26 15:11:06 +01:00
2715e7b1a7
a bit more vectorized
2020-10-26 15:09:32 +01:00
1cbfa866d2
get rid of scalar variables
2020-10-23 16:23:36 +02:00
bd67296e8d
MARC_VERSION as MSCVERSION
2020-10-22 11:50:13 +02:00
7fa31a8a1b
solving imported but unused pyflake
2020-10-19 12:55:35 +02:00
4c22efc6ce
added show GB
2020-10-19 12:52:10 +02:00
bac7ace413
Merge remote-tracking branch 'origin/general-N_constituents' into vtr-only
2020-10-13 17:39:19 +02:00
86d91baf90
0-offset for geom
2020-10-10 10:36:15 +02:00
ffabeacbcb
removing functionality related to deprecated 'geom' format
2020-10-10 09:41:11 +02:00
00e2128e03
don't test ASCII functionality
...
vtr writing in Geom class is alwas serial, no need to wait
2020-10-10 09:02:25 +02:00
06d11a72da
better fitting name
...
load implies a more direct takeover.
2020-10-09 19:19:05 +02:00
57180952ec
typo
2020-10-09 19:05:05 +02:00
347c88cbb6
documented
2020-10-09 14:24:29 +02:00
75401dd280
generate configuration from table
2020-10-09 07:45:20 +02:00
0c68d293b6
N_constituents is now a general homog property
2020-10-09 07:44:05 +02:00
6ecaaa31c9
fairly general function to generate material configuration
2020-10-08 22:07:26 +02:00
952ad4f8fe
functionality for geom generation in python lib
2020-10-08 18:39:05 +02:00
3050471a2d
avoid circular inclusion
2020-10-08 18:05:03 +02:00
846cbdd2e4
Merge branch 'general-config' into 'development'
...
General config
See merge request damask/DAMASK!245
2020-10-08 00:48:16 +02:00
8d4adebea2
pyaml is now needed
2020-10-06 17:46:34 +02:00
3d49678e93
new names part 2
2020-10-02 17:51:33 +02:00
1b18cae46b
adjusted to new names
2020-10-02 17:49:52 +02:00
a04966582a
Merge remote-tracking branch 'origin/development' into general-config
2020-10-02 14:54:16 +02:00
58229b8851
relaxed test conditions
...
even threshold between -.5 and +.5 can result in a single material.
2020-10-02 13:26:11 +02:00
b29f22f513
documenting the actually available TMPS
2020-10-01 09:25:32 +02:00
a59e64a8e4
renamed TPMS and added more from additional references
2020-09-30 17:28:25 -04:00
33685bc493
allow user do control output style
...
(numerics.yaml looks strange otherwise)
2020-09-30 12:32:37 +02:00
5ad46ae021
completely tested
2020-09-30 09:05:23 +02:00
fdfcb16d15
not needed
2020-09-30 08:16:12 +02:00
bbed4f9c6e
nice formatting
...
will be checked by pre-receive hook
2020-09-30 08:15:02 +02:00
b383a4530e
better name, subclassing for easy extension to load
2020-09-30 07:53:25 +02:00
54e4943353
get rid of shell scripts
2020-09-30 07:11:33 +02:00
76f07e4c1e
tmp_path is preferred over tmpdir
2020-09-29 19:25:50 +02:00
350f5eb66a
improved from_ODF documentation
2020-09-29 12:55:00 -04:00
31f86c28f4
[skip ci] added parameter description; shortened hybrid_IA pre-loop logic
2020-09-29 11:15:10 -04:00
8d204ea445
[skip ci] small simplification
2020-09-28 16:17:43 +02:00
d2cfcdaca0
reference Data for ODF sampling (hybridIA) + skeleton of a test
2020-09-28 16:14:27 +02:00
95b85626d8
general hybridIA functionality
2020-09-28 07:40:43 +02:00
8ec1014134
Merge remote-tracking branch 'origin/development' into cleaning
2020-09-27 18:11:43 +02:00
e8e1960391
Consistency for docstrings
2020-09-26 18:02:25 +02:00
d0028b2eea
Merge branch 'development' into fix-docstrings-for-sphinx
2020-09-26 17:56:42 +02:00
9e3506b8ef
thorougly testing seeding functionality
2020-09-25 07:41:58 +02:00
e58cc4bfa0
removed substitute call for direct mapping; added seed from averaging of material ID cloud
2020-09-24 22:06:43 -04:00
e8454c40c7
more tests
2020-09-24 22:59:31 +02:00
4960cf43d4
documented and tested
2020-09-24 21:43:04 +02:00
e5b414419a
Poisson disc for periodic situation
2020-09-24 21:26:16 +02:00
ec23ab8b61
basic test for seeding
2020-09-24 21:06:26 +02:00
b5ea04424b
Merge remote-tracking branch 'origin/development' into seeds-module
2020-09-24 20:58:53 +02:00
8c8db5b99f
switched "Geom.materials" to "Geom.material"
2020-09-23 17:27:15 -04:00
b995f34834
Merge branch 'development' into geom-fully-out-of-place
2020-09-23 22:50:20 +02:00
8c83566b71
suppress warning
...
we already handle the invalid FPE
2020-09-23 21:10:39 +02:00
9bce1ddc29
simplified
2020-09-23 20:48:34 +02:00
3612b17295
corrected Sphinx warnings
2020-09-23 16:21:20 +02:00
c85d27baec
functionality for seed creation
2020-09-23 09:45:36 +02:00
ae579d8baa
allow to specify seed IDs explicitly
2020-09-23 09:28:00 +02:00
5a64dd30e1
Merge branch 'development' into modernize-testing
2020-09-23 00:05:59 +02:00
683161d479
Merge branch 'development' into geom-fully-out-of-place
2020-09-22 15:22:58 -04:00
05835bacd3
removed set_X(), duplicate(), and .homogenization; renamed ".microstructure" to ".materials"
2020-09-22 14:49:28 -04:00
716a406361
Merge remote-tracking branch 'origin/master' into modernize-testing
2020-09-22 16:51:36 +02:00
7801f527f2
Merge remote-tracking branch 'origin/load-save-X-no-suffix' into development
2020-09-22 14:57:39 +02:00
5ef761fb98
inform the user about missing items in material.yaml
2020-09-21 19:10:20 +02:00
188905766f
removed Geom.get_X() methods in favor of direct property access
2020-09-21 11:13:53 -04:00
ca2f3f9493
set_X and add_comments methods now default to out-of-place
2020-09-21 10:29:07 -04:00
7bdd44a3d9
consistent names:
...
default file operations: save/load, non-default save_xx/load_xx
2020-09-20 22:04:28 +02:00
d33507866d
statistically more valid test
2020-09-20 21:50:52 +02:00
6ab88aad2b
default format for Table is ASCII
...
hence, renamed load_ASCII/save_ASCII to load/save
2020-09-20 20:45:06 +02:00
5895e74029
p is never above 1
...
1e-4 is quite low, usually we are far above. 1e-3 from https://docs.scipy.org/doc/scipy/reference/generated/scipy.stats.normaltest.html
is not too far away.
2020-09-20 19:13:54 +02:00
5b0b0de6b4
assertion reports offense; fixed seeds for spherical and fiber
2020-09-20 12:22:41 -04:00
3cc319ef08
removed debug print statement in test_util
2020-09-19 14:30:58 -04:00
7cbd422ae3
fixed coprime error when encountering NaN
2020-09-19 13:38:32 -04:00
6f45203c98
first version of a pyaml based class for material configuration
...
pyaml is (again) actively maintained and the ruamel.pyaml API is
instable
2020-09-19 13:01:19 +02:00
0746a2f3a4
give visual feedback
...
in most tests, this is done manually
2020-09-19 08:33:15 +02:00
c42511f101
small polishing
2020-09-18 16:32:59 +02:00
f23b89f055
get rid of annoying warning during test
2020-09-18 16:30:22 +02:00
c935ba1215
user friendly self reporting
2020-09-18 16:23:23 +02:00
1849ff0330
polishing
2020-09-18 15:03:51 +02:00
e2cd3da295
remaning to_xx
2020-09-18 14:29:27 +02:00
cdf3323774
Merge remote-tracking branch 'origin/development' into load-save-X
2020-09-18 14:21:43 +02:00
ec7dbb4c9a
do not store temp files
2020-09-18 14:21:30 +02:00
190f8a82d4
Merge branch 'texture-components-in-rotation-class2' into 'development'
...
Texture components in rotation class2
See merge request damask/DAMASK!225
2020-09-18 13:31:42 +02:00
ca689193f6
Merge branch 'new-random-style' into 'development'
...
new style for numpy random numbers
See merge request damask/DAMASK!224
2020-09-16 11:12:55 +02:00
70911b64ea
Merge branch 'development' into texture-components-in-rotation-class2
2020-09-16 09:57:50 +02:00
c71768a37a
polishing
2020-09-16 06:33:17 +02:00
ed006d1a89
streamlined fiber/spherical component sampling
2020-09-15 19:12:30 -04:00
c6be6fe87f
fixed spherical component sampling and testing
2020-09-15 18:40:05 -04:00
82ed546ff7
Merge branch 'texture-components-in-rotation-class2' of magit1.mpie.de:damask/DAMASK into texture-components-in-rotation-class2
2020-09-15 18:14:19 -04:00
0a34e342e4
fixed fiber component sampling and testing
2020-09-15 18:14:15 -04:00
d6378ec9bc
shortened from_fiber_component algorithm
2020-09-15 16:34:19 -04:00
ad2badd3be
[skip ci] vectorized and simplified
...
based on Philips ideas. Test requires from_axis_angle fix
2020-09-15 22:13:28 +02:00
9e93e8b710
test for last commit
2020-09-15 19:59:03 +02:00
d02617c961
fixed normalization of multidimensional axes (from_Rodrigues, from_axis_angle)
2020-09-15 13:09:24 -04:00
3f823ca717
testing general case
2020-09-15 14:39:05 +02:00
18c38f1284
polishing
2020-09-15 13:49:44 +02:00
2a082b7983
methods for texture component calculations
2020-09-15 12:11:46 +02:00
82e41d92ce
new style for numpy random numbers
...
https://numpy.org/doc/stable/reference/random/index.html?highlight=random#quick-start
https://albertcthomas.github.io/good-practices-random-number-generators/
2020-09-15 08:12:02 +02:00
2114c51098
revert mistakenly made header length change in array-comparison
2020-09-15 01:47:26 -04:00
96ad358f83
modified file reading/writing methods to load_X, save_X formalism
2020-09-15 01:14:05 -04:00
b298962101
Merge branch 'development' into table-out-of-place-only
2020-09-14 08:06:44 +02:00
f6758ecc28
table class operates out of place
2020-09-14 07:04:01 +02:00
a5d5638e4a
allow uncompressed files
2020-09-12 13:46:55 +02:00
865c90d00b
first check data type, then determine length of data...
2020-09-09 19:10:03 -04:00
7d9a4c08ce
Do not strictly require np.ndarrays for grid, size, or origin when not essential for functionality.
2020-09-10 00:59:40 +02:00
9fb3fef4b0
changed British "normalise" to US "normalize" as we (should) follow US English everywhere else.
2020-09-08 10:39:31 -04:00
a4785ba562
modified file writing of geom and table to a general to_file() that takes a "format=" argument
2020-09-03 10:53:16 -04:00
d645849baf
fixed remnant occurrences of .write() --> .to_file()
2020-09-02 11:32:40 -04:00
6785062a10
Merge branch 'development' into 'vtk-to-file-method'
...
# Conflicts:
# python/tests/test_VTK.py
2020-08-31 21:10:29 +02:00
6986d20b32
Merge branch 'geom-out-of-place' into 'development'
...
Geom methods are now out-of-place, i.e. return an updated duplicate
See merge request damask/DAMASK!203
2020-08-31 12:39:01 +02:00
03b02ad641
typos/sentence
2020-08-29 16:06:10 +02:00
c58693328e
don't try to access folders that don't exist
...
this happened in the case when different types of output exist in
different phases, e.g.
Aluminum: generic, plastic, sources
Steel: generic, plastic
We are a little bit inconsistent because 'generic' and 'plastic' are
always created (even if empty) but 'sources' will only exist if it
contains output. In future, we should have only folders that actually
contain data
2020-08-28 12:45:41 +02:00
9457435612
Merge branch 'polishing-for-release' into 'development'
...
Polishing for release
See merge request damask/DAMASK!206
2020-08-27 17:01:43 +02:00
0d5279863d
avoid rounding errors related to rotation
2020-08-27 09:33:09 +02:00
94797f8325
ignore all kinds of FPE
2020-08-27 09:32:49 +02:00
c5761831e2
more meaningful message
...
if add_xxx (Results) does not find matching datasets, inform the user
about this fact instead of saying
TypeError: object of type 'IMapUnorderedIterator' has no len()
2020-08-27 00:14:37 +02:00
c2191fd930
Make logic to mask (outside of) primitive more apparent (hopefully).
2020-08-27 00:06:52 +02:00
248ef8ef97
more tests
...
- invalid files
- scalar/array size,center,exponent for add_primitive
- rotation invariance for add primitive
2020-08-26 23:56:20 +02:00
229f6139c8
better user experience
...
- no meaningless warnings regarding floating point precision
- meaningful error message for invalid header
2020-08-26 23:54:56 +02:00
b9f1421c6b
[skip ci] removed unnecessary line continuations "\"
2020-08-26 17:27:08 -04:00
3f24d16603
renamed VTK.write() to VTK.to_file()
2020-08-26 16:15:15 -04:00
da46e5ea9a
cannot use np.linalg.norm when dealing with exponent triple
2020-08-26 15:49:25 -04:00
06b524d13e
added 'iso' as possible lattice (with no symmetry)
2020-08-26 21:39:20 +02:00
68c2908ba8
Merge branch 'rename-hdf5-output' into development
2020-08-26 12:34:56 +02:00
fee21cbd9c
more sensible tests
2020-08-25 17:17:49 +02:00
bf401e56cf
avoid name clash with damask.Geom
2020-08-25 09:56:24 +02:00
800dac5d01
correct type handling
...
no reason to calculate fill twice
2020-08-25 08:47:24 +02:00
96d4975fc4
using numpy functionality
2020-08-25 08:34:04 +02:00
51da632108
aiming at testing each individual statement
2020-08-25 07:49:56 +02:00
2d98325fa4
increasing test coverage
2020-08-25 01:21:17 +02:00
453f5a14c5
duplicated test (w/o wait for parallel out)
2020-08-25 00:53:05 +02:00
2751cdb6af
support comments also in vtr
2020-08-25 00:40:14 +02:00
9a2ac31545
explicit is better then implicit
2020-08-24 23:35:46 +02:00
0ceba2a6d3
use central functionality
2020-08-24 23:28:26 +02:00
71e08ea66a
small fixes:
...
- numpy has multiple float variants
- start renaming microstructure -> materialpoint where it does not hurt
- no need for type check if comparing against set of valid directions
(or I miss some corner cases)
2020-08-24 23:23:47 +02:00
2560f014a3
Merge remote-tracking branch 'origin/increase-geom-test-coverage' into geom-out-of-place
2020-08-24 17:17:31 -04:00
55443a3ff5
reflect change of variable names in file layout version
2020-08-24 22:54:09 +02:00
279d43ccc6
include version info + date in comments (Table class)
2020-08-24 19:04:59 +02:00
9d505c8518
better readable
...
- more explicit reporting
- always relative import for DAMASK
2020-08-24 09:58:24 +02:00
b393da4955
relative imports
...
... it's all about damask.XXX
2020-08-24 07:28:10 +02:00
0d3ef29554
more logical encapsulation
...
- getting data out of VTK is a functionality of the VTK class. Need to
discuss whether the VTK class should also provide grid and size (works
only for rectilinear grid, so hiding VTK type is not possible
anymore), but the current situation requires the Geom class to rely on
'internals' of the VTK class
- header is specific to *.geom format, not to Geom objects.
2020-08-24 06:46:22 +02:00
507a165733
functionality for getting data
...
- handy for Geom class, but could be of general interest
- add/set/get comments: follows same functions as for Geom class
2020-08-24 06:40:36 +02:00
3738002e4a
forgot the new reference files...
2020-08-23 22:27:53 -04:00
446ac03b07
All geom methods are now out-of-place, i.e. return an updated duplicate (to allow for daisy chaining).
...
* Added comments when methods acted.
* Added diff method
* Added flip method
* Fixed add_primitive inversion bug (again...)
* Fixed cell centering bug in add_primitive
* Added missing tests
2020-08-23 19:43:46 -04:00
22da3af92e
cleaning (prospector complaint)
2020-08-24 00:44:18 +02:00
44015082a3
dead code (copy and paste error)
2020-08-24 00:34:07 +02:00
c7cbd961a1
more systematic monkeypatching
...
allows comparison of reference files (log/history does not contain
information about damask.version and datetime.datetime.now)
2020-08-24 00:31:38 +02:00
9867830d68
store history of geometry modifications
2020-08-23 23:52:48 +02:00
a1c78b778a
WIP: track history in VTK objects
2020-08-23 23:22:53 +02:00
7b50a3b364
material.config is not used anymore
2020-08-23 15:20:11 +02:00
d65371d42f
removed unused and untested functionality
...
PEP 20: Explicit is better than implicit.
2020-08-23 12:55:55 +02:00
6f79573140
more test coverage
2020-08-23 11:05:56 +02:00
07af7b2f98
geom is written to vtr exlcusively, not to general vtk
...
base tests on vtr
2020-08-23 10:50:15 +02:00
64e7582e8e
consistent interface to ndimage filters
...
Boolean 'periodic' sets mode to 'wrap' or 'nearest'
2020-08-23 10:02:22 +02:00
975db01f31
microstructure -> materialpoint
...
at least for new functionality
2020-08-23 09:38:08 +02:00
5fb2d30ee4
fast and for arbitrary type
2020-08-23 09:02:17 +02:00
b731b1e768
Geom.to_vtk improvements
...
- should be integer
- should have a test
2020-08-23 08:49:49 +02:00
2b09a7d31d
fixed Geom.canvas bug, added Geom.from_vtk, added mode,selection options to Geom.clean
2020-08-22 21:36:11 -04:00
bd4fb562bc
make use of inhereted dependencies
2020-08-22 20:57:42 +02:00
499ce01748
added Geom.copy() method
2020-08-22 13:57:31 -04:00
34a08bd8b8
pip package is pillow, not PIL
2020-08-22 17:04:21 +02:00
752d6f773b
corrected add_primitive test
2020-08-09 23:14:32 +02:00
ff7eed4477
(unified) type hints
2020-08-08 20:56:17 +02:00
0c6ce390b5
simple IO tests
...
can be improved ...
2020-08-08 20:35:50 +02:00
6a5471d243
have microstructure with 'to' and 'of'
2020-08-08 20:24:36 +02:00
55a620b378
migrating to library
2020-08-08 20:14:30 +02:00
a0e0f28e51
migrating shell scripts to library
2020-08-08 19:42:34 +02:00
5fcff876f9
replace selectively
...
useful for vicinity_offset and add_primitive
2020-08-08 18:41:47 +02:00
56eb57d253
homogenization will be removed soon, stop reporting it
2020-08-08 18:24:17 +02:00
7824a61f2e
Merge branch 'user_defined_add_calculation' into 'development'
...
User defined add calculation
See merge request damask/DAMASK!195
2020-08-06 00:53:16 +02:00
ce00371f52
fixed rounding bug and updated reference images
2020-08-05 10:44:10 -04:00
e4103564a9
16bit color index; proper rounding of index values
2020-08-05 10:08:48 -04:00
0aaba487d7
required packages
2020-08-05 06:20:05 +02:00
856dc22eab
Merge branch 'imageData-as-colormap.apply' of magit1.mpie.de:/damask/DAMASK into imageData-as-colormap.apply
2020-08-04 20:38:02 +02:00
7d49606597
restored correct bound calculation
...
test different bounds options
2020-08-04 20:34:40 +02:00
e73ffd6da9
fixed and condensed lo,hi range assignment
2020-08-04 20:29:27 +02:00
e07c00a592
polishing + simple test
...
autoscaling seems to be broken
2020-08-04 20:14:04 +02:00
84551c9d1e
integrated former imageData functionality as "shade" method
2020-08-04 13:05:30 -04:00
ae20f5ffe6
attempt to fix parallel writing on MacOS
...
should resolve TypeError: cannot pickle
'vtkmodules.vtkIOXML.vtkXMLRectilinearGridWriter' object error
2020-08-03 18:19:38 +02:00
3f2e63977d
not needed anymore
2020-07-31 19:46:44 +02:00
72ea9a5cec
non-vectorized formulas can be implemented in a user function
2020-07-31 19:42:44 +02:00
a9f53f4822
non-vectorized formulas can be implemented in a user functionc
2020-07-31 17:04:14 +02:00
50d7842dbe
more tests
2020-07-31 16:50:01 +02:00
aadce1e554
Merge branch 'development' into user_defined_add_calculation
2020-07-31 16:15:31 +02:00
daab5a8952
polishing
2020-07-24 22:42:16 +02:00
326b82b3aa
symmetric scatter around nominal value
2020-07-24 22:41:41 +02:00
4860f9c9ce
drop support for parallel marc versions
...
can still be handled by the user, but is a niche use case
2020-07-18 09:51:53 +02:00
2bbd68d964
with_suffix strips .1 from 2019.1
2020-07-16 09:33:17 +02:00
199ec51bf8
typo
2020-07-15 21:59:43 +02:00
9225d439ab
object oriented path handling
2020-07-15 21:58:24 +02:00
fa7f7e6fa4
don't complain if ssh without -X/-Y
2020-07-15 21:19:09 +02:00
333e840b09
standard behavior
...
most modules have an __version__ attribute
2020-07-15 20:57:56 +02:00
6259984e93
simplified
...
complicated, but allows to use functions as properties
2020-07-15 20:54:37 +02:00
b0e06f180a
reading numpy manual ...
...
https://numpy.org/doc/stable/reference/generated/numpy.isclose.html
rtol=1.e-8, b=1 gives atol+btol=1.e-8+1e-9, simplified to 1e-8
2020-07-13 22:48:29 +02:00
e1bbaac0d7
Merge branch 'Vectorize-Orientation' into 'development'
...
Vectorize orientation
See merge request damask/DAMASK!186
2020-07-03 12:22:04 +02:00
7b3d1204fa
easier to use
2020-07-03 07:29:31 +02:00
d4f97f8346
Merge branch 'misc-improvements' into 'development'
...
Misc improvements
See merge request damask/DAMASK!184
2020-07-02 21:52:47 +02:00
7b899f1ff1
fixed output number format width for single increment0
2020-07-02 11:33:09 -04:00
81b3c10305
removed ambiguous variable "l"
2020-07-02 10:37:57 -04:00
368a241931
added testing of __iadd__ and __invert__
2020-07-02 10:27:52 -04:00
5a96708f41
added __iadd__ method
2020-07-02 10:26:04 -04:00
f3ff2e7412
added __iadd__ method
2020-07-02 10:25:04 -04:00
3b72d0ec72
added __invert__ method to reverse colormap
2020-07-02 10:13:47 -04:00
b88becb9d0
don't go out of focus during initialization
2020-07-02 08:25:35 +02:00
208d5109d4
still needed ...
2020-07-02 08:14:13 +02:00
86dc7054a4
still needed
2020-07-01 22:11:16 +02:00
4abd77fccf
more test coverage
2020-07-01 17:31:16 +02:00
be1eb996e0
more tests and cleaning
2020-07-01 15:12:34 +02:00
a7e3dd5a56
Merge branch 'development' into Vectorize-Orientation
2020-07-01 13:30:39 +02:00
e18a5b8a1b
simplifications + more tests
2020-07-01 08:57:28 +02:00
de8e9b5fc1
fast reduced operation
2020-07-01 00:37:02 +02:00
23365660d8
polishing
2020-06-30 23:18:32 +02:00
ef0c78745a
fix for vectorized in_SST + test
2020-06-30 23:05:41 +02:00
49d448dced
vectorized and cleaned
2020-06-30 21:43:57 +02:00
9a83b11a99
testing IPF color (vectorization)
2020-06-30 18:41:59 +02:00
bdb461a553
more flexible and independent
2020-06-30 18:12:39 +02:00
6e27a140f6
better split
2020-06-30 17:35:52 +02:00
3d6afff27a
clearer name
2020-06-30 17:30:29 +02:00
be21d1289d
using slicing method
2020-06-30 16:33:04 +02:00
c86e3e292c
WIP: cleaning namespace
2020-06-30 14:07:10 +02:00
9d94b521ad
polishing
2020-06-30 13:31:58 +02:00
ce7018164f
WIP: more reasonable naming
2020-06-30 13:05:06 +02:00
b8b34080fe
enable array like slicing/iteration
2020-06-30 12:16:47 +02:00
c8adfae0fa
bugfix: wrong variables used
2020-06-30 07:16:49 +02:00
8dc87023d1
test from_range; update ASCII colormap labels (i_RGBA)
2020-06-29 22:23:24 -04:00
decbe8074a
not using unassigned variable
2020-06-29 22:22:21 -04:00
d3b3d628b2
PEP conformity...
2020-06-29 22:07:14 -04:00
39aac76859
__add__, from_range, fixed missing np.array(colors), show peppered...
2020-06-29 22:04:03 -04:00
97ca1b1a9b
try wxPython before tkinter, recent macOS otherwise fails
2020-06-29 22:02:12 -04:00
d06daec4cb
reducec vectorized is improved
2020-06-29 18:25:45 +02:00
2d0c680daf
useful information
2020-06-29 07:30:42 +02:00
4875191ffd
change if statement so github doesnt complain
2020-06-28 19:32:22 +02:00
a657125840
standard version string
2020-06-28 19:30:23 +02:00
a99f016438
problem with if value is true / if value == True
2020-06-28 19:29:52 +02:00
c7eb56a63d
single precision reference files
2020-06-28 19:25:58 +02:00
37f7362cbe
Merge branch 'development' into misc-improvements
2020-06-28 19:23:17 +02:00
323f828606
Merge branch 'development' into modernize_colormap
2020-06-28 19:09:52 +02:00
8484d2e6cc
fix github stuff
2020-06-28 19:05:10 +02:00
352c4e95f1
more vectorized
2020-06-28 19:03:06 +02:00
1cfa6d44d9
dummy version could be useful for other tests
...
note that monkey patching requires direct access to damask.version in
the respective modules.
'from xx import yy' creates a copy (at least for the version string).
2020-06-28 11:51:30 +02:00
b3f5ee022a
unified style
2020-06-28 11:40:19 +02:00
e6a87da37c
compare to reference results
...
need to patch damask.version to be independent of version strings (in
json and ASCII table)
2020-06-28 11:20:09 +02:00
6a748d2edf
do not expand single strings into characters
2020-06-28 11:19:18 +02:00
ae4146f1c6
report version, write out 'modern' ASCII table style
2020-06-28 11:18:22 +02:00
e81b67e964
polishing
2020-06-28 10:32:59 +02:00
1c03bd157f
more testing
2020-06-28 10:25:28 +02:00
b78c809375
real output
2020-06-28 10:25:28 +02:00
3513754647
low/high instead of left/right
2020-06-28 10:25:28 +02:00
f4d13bc810
binary representation depends on vtk lib version
2020-06-28 10:07:31 +02:00
d965d66319
[skip ci] documenting
2020-06-28 09:34:10 +02:00
8a9a768a77
support pathlib.Path
2020-06-28 07:17:51 +02:00
8d5a72e936
more test, swich to pathlib
2020-06-27 23:38:58 +02:00
8c8132bcd7
coordinates should not have random names
2020-06-27 23:37:09 +02:00
c929af12c0
testing/polishing
2020-06-27 19:44:12 +02:00
cf63226721
testing all conversions
2020-06-27 18:55:27 +02:00
234699bd18
reverse should return DAMASK colormap
2020-06-27 16:25:10 +02:00
e779e190ea
new colormap class for use in python
...
- based on matplotlib "ListedColormap"
- constructors
- Array of RGB values (inherited),
- 'from_bounds': perceptual uniform colormap within given bounds
- 'from_predefined': from matplotlib or DAMASK templates
- export to files (WIP)
- preview on screen
2020-06-27 16:12:40 +02:00
1f9b5280cb
forgotten debug statement
2020-06-26 11:47:04 +02:00
a69f82e7c3
speed up vtk out
...
- limit to single precision
- write in background
2020-06-26 11:45:54 +02:00
bfae88a364
numpy compatible
2020-06-26 11:45:30 +02:00
bddb514072
more systematic reporting
2020-06-26 11:45:06 +02:00
27220a03bc
not invalid anymore
2020-06-25 09:23:43 +02:00
3290e2c585
handle even obscure directions
2020-06-25 08:29:36 +02:00
5d7213b062
restore reminder to document changes
...
causes conflicts with outdated tests and is not urgent: postpone until
release.
2020-06-25 08:19:07 +02:00
c9829f0f1f
only Chuck Norris can divide by zero
2020-06-25 08:18:39 +02:00
cd23937af5
Merge branch 'development' into f-strings
2020-06-25 07:46:24 +02:00
e64d353865
condensed scale_to_coprime; added test of scale_to_coprime
2020-06-24 18:37:33 -04:00
9999560247
easier understanding of from_ang data layout interpretation
2020-06-24 18:36:43 -04:00
14d3b7e66d
more f-stringing
2020-06-24 16:59:55 -04:00
966b6f8007
shapes init copes with integers instead of strict tuples; introduced f-strings
2020-06-24 14:18:06 -04:00
f8f433e826
introduced f-strings
2020-06-24 14:13:56 -04:00
ff858fd4c8
[skip ci] corrected help string for "srepr"
2020-06-24 20:13:09 +02:00
4314ec1f37
[skip ci] started to replace .format() with f-strings
2020-06-24 11:02:37 -04:00
3d93a5ff00
Merge branch 'migrate-to-pathlib' into 'development'
...
Migrate to pathlib
See merge request damask/DAMASK!177
2020-06-24 14:54:36 +02:00
6fa5ae6ebf
literature from Karo
2020-06-22 23:14:58 +02:00
e33895dd35
[skip ci] better logic
2020-06-21 10:37:09 +02:00
c6a5bb8a3b
is 2020
2020-06-21 10:04:45 +02:00
4c5939ef23
small polishing
2020-06-20 22:51:00 +02:00
15b43bcebf
from_directions is not general, removed
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polishing
2020-06-20 19:57:49 +02:00
3f63a4fdbc
[skip ci] typo
2020-06-20 18:13:34 +02:00
4dae3643c9
vectorized IPF color working
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results also uses the vectorized form.
Still needs careful checking
2020-06-20 17:15:13 +02:00
ebdb65d31f
standard broadcast_to behavior
2020-06-20 16:35:22 +02:00
262346ff5a
polishing
2020-06-20 16:34:19 +02:00
d93ed2bc5c
several improvements:
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- vectorized from_directions
- more tests (96% coverage, only random functionality is untested)
- updated documentation, folloing numpy standard
- inverse operator '~' introduced
2020-06-20 12:20:43 +02:00
055fa64f5f
better readable
2020-06-19 12:25:46 +02:00
13bf7515ce
WIP (broken?): vectorized calculation of IPF color
2020-06-19 10:54:13 +02:00
1648963b57
vectorized equivalent orientation calculation
2020-06-18 22:53:04 +02:00
cdda556e18
small improvements
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- hack for reporting multiple rotation
- bugfix for vectorized Rodrigues vector
- more general broadcasting (even more powerfull then np.broadcast_to)
2020-06-18 22:30:22 +02:00
fe5e5babfe
more useful for vectorized calculations
2020-06-18 22:29:28 +02:00
d0d9245707
clearer intention
2020-06-16 23:35:50 +02:00
0f42ff6b5d
reshaped F transpose error3
2020-06-10 14:02:52 +02:00
4f4d8d8c92
reshaped F transpose error2
2020-06-10 13:27:36 +02:00
7d7927e821
reshaped F transpose error
2020-06-10 13:22:57 +02:00
f3d59ddfe5
F reshaped error
2020-06-10 12:00:33 +02:00
36f04309b4
issue in test_mechanics
2020-06-09 21:33:13 +02:00
694b7ec3c5
mechanics done
2020-06-09 21:27:08 +02:00
d365cc9e12
typo
2020-06-09 14:39:17 +02:00
2978cf72f7
check for test_mechanics
2020-06-09 14:31:20 +02:00
824682d236
checked for typo
2020-06-09 14:26:22 +02:00
627e62439b
the single case is included in test file
2020-06-09 14:17:31 +02:00
a76b5233be
fix pyflakes imported but unused in pytest 2
2020-06-05 13:54:38 +02:00
54c20cdd3c
fix pyflakes imported but unused in pytest
2020-06-05 13:53:47 +02:00
cb1779ef9a
fix pep257: D415 / First line should end with a period, question mark, or exclamation point (not e)
2020-06-05 13:49:30 +02:00
Martin Diehl