vectorized
This commit is contained in:
Martin Diehl
parent
7291b95055
commit
7352431143
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@ -914,7 +914,7 @@ class Geom:
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v.save('GrainBoundaries')
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def ShowGBoptimized(self,periodic=False,across=[[0],[1],[2],[0,1],[1,2],[0,2],[0,1,2]]):
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def ShowGBoptimized(self,periodic=True,direction='xyz'):
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"""
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Create an VTK files to show grain boundaries as feature edges.
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@ -926,101 +926,23 @@ class Geom:
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Show grain boundaries only across certain axis. [X=0,Y=1,Z=2]. Defaults to all possible.
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"""
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if across in [[0],[1],[2],[0,1],[1,2],[0,2],[0,1,2]]:
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pass
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elif across == [[0],[1],[2],[0,1],[1,2],[0,2],[0,1,2]]:
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pass
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else:
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print('across list not valid, it must be in [[0],[1],[2],[1,2],[2,3],[1,3],[1,2,3]]')
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coord=grid_filters.node_coord0(self.grid,self.size,self.origin).reshape(-1,3,order='F')
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index={}
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nodes={}
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nodes_PBC={}
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if periodic:
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nodes_PBC['0']=np.array([])
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nodes_PBC['1']=np.array([])
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nodes_PBC['2']=np.array([])
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else:
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nodes_PBC['0']=np.concatenate((
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np.arange(0 , np.prod(self.grid+1) , (self.grid[0]+1) ),
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np.arange(self.grid[0] , np.prod(self.grid+1) , (self.grid[0]+1) ) ))
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nodes_PBC['2']=np.concatenate((
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np.arange(0 , np.prod(self.grid[:2]+1) , 1 ),
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np.arange(np.prod(self.grid+1) - np.prod(self.grid[:2]+1), \
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np.prod(self.grid+1) , 1 ) ))
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nodes_PBC['1']=np.concatenate((
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np.concatenate([np.arange((i)*np.prod(self.grid[:2]+1), \
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(i)*np.prod(self.grid[:2]+1)+ (self.grid[0]+1)) for i in range(self.grid[2]+1)]) ,
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np.concatenate([np.arange( (i+1)*np.prod(self.grid[:2]+1)-(self.grid[0]+1),\
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(i+1)*np.prod(self.grid[:2]+1)) for i in range(self.grid[2]+1)]) ))
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# offset (for connectivity)
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o = [[0, self.grid[0]+1, np.prod(self.grid[:2]+1)+self.grid[0]+1, np.prod(self.grid[:2]+1)],
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[0, np.prod(self.grid[:2]+1), np.prod(self.grid[:2]+1)+1, 1],
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[0, 1, self.grid[0]+1+1, self.grid[0]+1]]
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for d_s in [0,1,2]:
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base_nodes = np.where(self.material==np.roll(self.material,1,d_s),False,True)
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mask = np.where(self.material==np.roll(self.material,1,d_s),False,True)
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for d in [0,1,2]:
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if d_s == d:
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base_nodes = np.concatenate((base_nodes,np.take(base_nodes,[0],d)),d)
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else:
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base_nodes = np.concatenate((base_nodes,np.logical_and(np.take(base_nodes,[0],d),False)),d)
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nodes['{}'.format(d_s)]= np.argwhere(base_nodes.flatten(order='F'))[:,0]
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index['{}'.format(d_s)]=np.isin(nodes['{}'.format(d_s)],nodes_PBC['{}'.format(d_s)],assume_unique=True,invert=True)
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nodes_x=nodes['0'][index['0']]
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coord_x=np.concatenate(( [[coord[p], \
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coord[p+(self.grid[0]+1)], \
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coord[p+np.prod(self.grid[:2]+1)+(self.grid[0]+1)], \
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coord[p +np.prod(self.grid[:2]+1)]] for p in nodes_x] ))
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nodes_y=nodes['1'][index['1']]
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coord_y=np.concatenate(( [[coord[p], \
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coord[p+np.prod(self.grid[:2]+1)], \
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coord[p+np.prod(self.grid[:2]+1)+1], \
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coord[p +1]] for p in nodes_y] ))
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nodes_z=nodes['2'][index['2']]
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coord_z=np.concatenate(( [[coord[p], \
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coord[p+1], \
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coord[p+(self.grid[0]+1)+1], \
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coord[p+(self.grid[0]+1)]] for p in nodes_z] ))
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if [0] in across:
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connectivity_x=np.array([[p,p+1,p+2,p+3] for p in range(0,nodes_x.shape[0],4)])
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vtk_x=VTK.from_unstructuredGrid(coord_x,connectivity_x,'QUAD')
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vtk_x.save('GrainBoundariesX')
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if [1] in across:
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connectivity_y=np.array([[p,p+1,p+2,p+3] for p in range(0,nodes_y.shape[0],4)])
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vtk_y=VTK.from_unstructuredGrid(coord_y,connectivity_y,'QUAD')
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vtk_y.save('GrainBoundariesY')
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if [2] in across:
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connectivity_z=np.array([[p,p+1,p+2,p+3] for p in range(0,nodes_z.shape[0],4)])
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vtk_z=VTK.from_unstructuredGrid(coord_z,connectivity_z,'QUAD')
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vtk_z.save('GrainBoundariesZ')
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if [0,1] in across:
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connectivity_xy=np.array([[p,p+1,p+2,p+3] for p in range(0,4*(nodes_x.shape[0]+nodes_y.shape[0]),4)])
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nodes_vXY=np.concatenate(( coord_x, coord_y ))
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vtk_xy=VTK.from_unstructuredGrid(nodes_vXY,connectivity_xy,'QUAD')
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vtk_xy.save('GrainBoundariesXY')
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if [0,2] in across:
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connectivity_xz=np.array([[p,p+1,p+2,p+3] for p in range(0,4*(nodes_x.shape[0]+nodes_z.shape[0]),4)])
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nodes_vXZ=np.concatenate(( coord_x, coord_z ))
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vtk_xz=VTK.from_unstructuredGrid(nodes_vXZ,connectivity_xz,'QUAD')
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vtk_xz.save('GrainBoundariesXZ')
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if [1,2] in across:
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connectivity_yz=np.array([[p,p+1,p+2,p+3] for p in range(0,4*(nodes_y.shape[0]+nodes_z.shape[0]),4)])
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nodes_vYZ=np.concatenate(( coord_y, coord_z ))
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vtk_yz=VTK.from_unstructuredGrid(nodes_vYZ,connectivity_yz,'QUAD')
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vtk_yz.save('GrainBoundariesYZ')
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if [0,1,2] in across:
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connectivity_xyz=np.array([[p,p+1,p+2,p+3] for p in range(0,nodes_x.shape[0]+nodes_y.shape[0]+nodes_z.shape[0],4)])
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nodes_vXYZ=np.concatenate(( coord_x, coord_y, coord_z ))
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vtk_xyz=VTK.from_unstructuredGrid(nodes_vXYZ,connectivity_xyz,'QUAD')
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vtk_xyz.save('GrainBoundariesXYZ')
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else:
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pass
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mask = np.concatenate((mask,np.take(mask,[0],d)),d) if d_s == d else \
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np.concatenate((mask,np.logical_and(np.take(mask,[0],d),False)),d)
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if d_s == 0 and periodic: mask[0,:,:] = mask[-1,:,:] = False
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if d_s == 1 and periodic: mask[:,0,:] = mask[:,-1,:] = False
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if d_s == 2 and periodic: mask[:,:,0] = mask[:,:,-1] = False
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base_nodes = np.argwhere(mask.flatten(order='F')).reshape(-1,1)
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connectivity = np.block([base_nodes + o[d_s][d] for d in range(4)])
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vtk = VTK.from_unstructuredGrid(coord,connectivity,'QUAD')
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vtk.save(f'GrainBoundaries{d_s}')
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