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more then one direction in file

This commit is contained in:
Martin Diehl 2020-11-27 20:16:06 +01:00
parent c2be41b9f6
commit 3c1f1af009
1 changed files with 22 additions and 20 deletions
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42
python/damask/_geom.py
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@ -840,36 +840,38 @@ class Geom:
origin = self.origin,
comments = self.comments+[util.execution_stamp('Geom','vicinity_offset')],
)
def get_grain_boundaries(self,periodic=True,direction='x'):
def get_grain_boundaries(self,periodic=True,directions='xyz'):
"""
Create mesh in VTK to show grain boundaries as feature edges.
Create VTK unstructured grid containing grain boundaries.
Parameters
----------
periodic : Boolean, optional
periodic : bool, optional
Show boundaries across periodicity. Defaults to True.
direction : string
Show grain boundaries only across a certain direction. ['x','y','z']
direction : string, optional
Directions to consider ('x','y','z'). Defaults to 'xyz'.
"""
coord=grid_filters.node_coord0(self.grid,self.size,self.origin).reshape(-1,3,order='F')
# offset (for connectivity)
o = [[0, self.grid[0]+1, np.prod(self.grid[:2]+1)+self.grid[0]+1, np.prod(self.grid[:2]+1)],
[0, np.prod(self.grid[:2]+1), np.prod(self.grid[:2]+1)+1, 1],
[0, 1, self.grid[0]+1+1, self.grid[0]+1]]
connectivity = []
for i,d in enumerate(['x','y','z']):
if d not in directions.lower(): continue
mask = self.material != np.roll(self.material,1,i)
for j in [0,1,2]:
mask = np.concatenate((mask,np.take(mask,[0],j)*(i==j)),j)
if i == 0 and not periodic: mask[0,:,:] = mask[-1,:,:] = False
if i == 1 and not periodic: mask[:,0,:] = mask[:,-1,:] = False
if i == 2 and not periodic: mask[:,:,0] = mask[:,:,-1] = False
d_s=ord(direction)-120 # x=0, y=1, z=2
mask = self.material != np.roll(self.material,1,d_s)
for d in [0,1,2]:
extra_layer = np.take(mask,[0],d) if d_s == d else np.zeros_like(np.take(mask,[0],d),bool)
mask = np.concatenate((mask,extra_layer),d)
if d_s == 0 and not periodic: mask[0,:,:] = mask[-1,:,:] = False
if d_s == 1 and not periodic: mask[:,0,:] = mask[:,-1,:] = False
if d_s == 2 and not periodic: mask[:,:,0] = mask[:,:,-1] = False
base_nodes = np.argwhere(mask.flatten(order='F')).reshape(-1,1)
connectivity = np.block([base_nodes + o[d_s][d] for d in range(4)])
return VTK.from_unstructuredGrid(coord,connectivity,'QUAD')
base_nodes = np.argwhere(mask.flatten(order='F')).reshape(-1,1)
connectivity.append(np.block([base_nodes + o[i][k] for k in range(4)]))
coords = grid_filters.node_coord0(self.grid,self.size,self.origin).reshape(-1,3,order='F')
return VTK.from_unstructuredGrid(coords,np.vstack(connectivity),'QUAD')