055fa64f5f
better readable
2020-06-19 12:25:46 +02:00
13bf7515ce
WIP (broken?): vectorized calculation of IPF color
2020-06-19 10:54:13 +02:00
1648963b57
vectorized equivalent orientation calculation
2020-06-18 22:53:04 +02:00
cdda556e18
small improvements
...
- hack for reporting multiple rotation
- bugfix for vectorized Rodrigues vector
- more general broadcasting (even more powerfull then np.broadcast_to)
2020-06-18 22:30:22 +02:00
fe5e5babfe
more useful for vectorized calculations
2020-06-18 22:29:28 +02:00
d0d9245707
clearer intention
2020-06-16 23:35:50 +02:00
a76b5233be
fix pyflakes imported but unused in pytest 2
2020-06-05 13:54:38 +02:00
54c20cdd3c
fix pyflakes imported but unused in pytest
2020-06-05 13:53:47 +02:00
cb1779ef9a
fix pep257: D415 / First line should end with a period, question mark, or exclamation point (not e)
2020-06-05 13:49:30 +02:00
eae9698d22
equivalent,related and inFZ vectorized + pytest
2020-06-05 13:48:12 +02:00
ac09a2912a
fix python/damask/_orientation.py contains invalid python3 code 2
2020-06-04 16:45:44 +02:00
6a24aee171
fix python/damask/_orientation.py contains invalid python3 code
2020-06-04 16:44:57 +02:00
3897136f85
avoid python/damask/_orientation.py exceeds line length limit (maximum line length 141 > 132)
2020-06-04 16:43:28 +02:00
0c41e33434
orientation.equivalent takes several rotations at the same time + small test"
...
"
""
2020-06-04 16:39:24 +02:00
a9c61ede69
bugfix: should also work if DAMASK_NUM_THREADS is not set
2020-06-03 20:24:18 +02:00
bda555fd1c
we are looking for a path, not for a file
2020-06-03 16:47:03 +02:00
bb5485927e
names like 2020.2 cannot be converted to int
2020-06-03 15:18:46 +02:00
5da1aa49bc
string should be a Path object
2020-06-03 15:17:00 +02:00
9b04a45bbd
bugfix (wrong variable name)
2020-06-03 13:53:00 +02:00
3be1a33820
easier to read
2020-06-03 13:32:47 +02:00
c67fbacfc7
higher test coverage
...
- invalid operations
- legacy output
2020-06-03 11:03:31 +02:00
c5d0c7e52e
easier to read, more flexible
2020-06-03 10:44:40 +02:00
ac9fddd9e9
Merge remote-tracking branch 'origin/development' into misc-improvements
2020-06-02 00:12:50 +02:00
a51cc39613
proper docstring
2020-06-01 22:13:01 +02:00
72a0b1fae5
testing and polishing
2020-06-01 11:33:22 +02:00
7a193639fb
also show datasets without unit
...
currently, this is only the orientation dataset
Also enable renames. Since this alters the history, the user need to
enable this
2020-05-31 23:50:06 +02:00
bcb0ce5e5e
typo
2020-05-31 18:51:12 +02:00
adb92de8cc
Merge branch 'development' into less-shell-scripts
2020-05-31 18:49:51 +02:00
421b8f4268
documented function interfaces
2020-05-30 17:31:50 +02:00
1afa00a19c
testing systematically all possibilities
2020-05-28 08:05:16 +02:00
0fe450a033
Merge branch 'misc-improvements' into less-shell-scripts
2020-05-27 17:40:13 +02:00
31f72aa912
handle min/mid/max eigenvalues/vectors separately
...
storing as matrix/vector is not favorable for paraview and in many
cases, either min or max are of interest only
2020-05-27 17:39:46 +02:00
addc4c36d1
test for XDMF writer
...
just ensure that it does not throw an exception
2020-05-26 08:06:39 +02:00
520dfe216a
cleaning
2020-05-26 07:57:32 +02:00
908788271a
Merge branch 'misc-improvements' into less-shell-scripts
2020-05-26 07:24:03 +02:00
5ad7fe04d0
bugfix:
...
used wrong type
2020-05-26 07:15:27 +02:00
670e08468b
reorder
...
tests depend on other functionality that should be tested first
2020-05-26 06:49:29 +02:00
88c49fc4f4
also check values
2020-05-26 06:48:52 +02:00
7f09c90c7d
different h5py versions seem to throw different errors
2020-05-26 06:39:11 +02:00
6f7c7005b0
bugfix:
...
- proper overwrite
- no out of bounds error for empty time selection (just pick nothin)
2020-05-25 23:54:06 +02:00
9855c61747
store vtk file in tmp directory
2020-05-25 23:39:19 +02:00
9076fbe525
testing overwrite functionality
2020-05-25 23:05:31 +02:00
d6877da2b6
single source of truth
2020-05-25 20:15:45 +02:00
d9d089c359
avoid repetition and do correct encode/decode
2020-05-25 20:13:57 +02:00
5d0a2aac8f
polishing reporting
2020-05-25 20:13:57 +02:00
b9e16ea951
overwriting datasets makes sense in special cases
...
but prevent user from accidently doing that and store the information
2020-05-25 20:13:57 +02:00
248f199a7b
track creation time
2020-05-25 18:51:10 +02:00
b1b8d02320
typo
2020-05-25 16:41:23 +02:00
9d7158b51a
Merge branch 'misc-improvements' of magit1.mpie.de:/damask/DAMASK into misc-improvements
2020-05-25 16:40:23 +02:00
f07eaf19d0
fixed broadcasting + corresponding test
2020-05-25 16:37:08 +02:00
784d6d09d9
cleaning
2020-05-25 15:55:38 +02:00
dad7c7a2a0
Merge branch 'vectorize_rotation' into misc-improvements
2020-05-25 15:50:03 +02:00
3e2cbef780
Merge remote-tracking branch 'origin/development' into vectorize_rotation
2020-05-25 15:46:27 +02:00
77b68ab86f
using rotation class for rotations
2020-05-25 09:39:39 +02:00
39505507f1
not needed anymore
2020-05-25 08:07:12 +02:00
17aa3c00dc
more tests
2020-05-24 22:52:00 +02:00
296308e11e
fix for rotation around 90 deg
...
more tests
2020-05-24 20:52:19 +02:00
34adefd4ca
simplified
2020-05-24 18:30:45 +02:00
594fcb2b72
seems more appropriate
2020-05-24 15:10:53 +02:00
3231a49107
centralize functionality
2020-05-24 09:39:58 +02:00
a26cba1457
calling a few missing statements
2020-05-24 09:06:11 +02:00
a3d9520c4b
polishing
2020-05-23 15:54:28 +02:00
82419f8649
testing selection
2020-05-23 10:38:25 +02:00
8a848979aa
missing test for IPF color
2020-05-23 09:13:45 +02:00
0549e33a00
vectorized/fast
2020-05-23 08:38:57 +02:00
e2cf527dfb
add missing test
2020-05-23 08:19:08 +02:00
b8e83cd263
do not overwrite
2020-05-22 20:42:13 +02:00
7bd681a5ed
very simple test
2020-05-22 19:04:02 +02:00
11eda510aa
testing functionality of Lattice separately
2020-05-22 18:45:27 +02:00
b33de48528
testing broadcasting
2020-05-22 15:12:37 +02:00
23b1381eaf
give credit
2020-05-21 11:30:25 +02:00
16f30a10d0
polishing
2020-05-20 23:50:08 +02:00
353fd3ceb6
more tests
...
now 95% test coverage of Rotation class
2020-05-20 19:16:31 +02:00
128a96e7f6
vectorized formula is enough
2020-05-20 18:13:51 +02:00
bb419d49df
polishing
2020-05-20 16:19:12 +02:00
b59d773689
store all test data together
2020-05-20 15:26:49 +02:00
9240dd59b2
mark as internal
...
all functionality (+ sanity checks) can be done with the class
functionality
2020-05-20 11:11:07 +02:00
9694767997
all seems to work now
2020-05-20 09:01:38 +02:00
1d8903bb0c
transition code
2020-05-20 00:18:44 +02:00
1fa4a07bb8
for backward compatibility
2020-05-19 23:39:01 +02:00
3e00269179
again some more tests
2020-05-19 23:24:12 +02:00
1c53a37de4
more tests and adjustments to tolerances
2020-05-19 21:03:30 +02:00
a6b0aaffba
more tests
...
Hotfix needed for axis angle to matrix (not used in DAMASK, needs
further investigation)
2020-05-19 19:41:50 +02:00
de79a5af43
directly test the internal conversions
...
some work to do ...
2020-05-19 09:55:23 +02:00
065c624f94
fix for backward compatibility
2020-05-19 09:10:14 +02:00
ebf05a279e
standard name
2020-05-19 08:59:03 +02:00
1a3a4a800e
vectorized
2020-05-19 07:59:24 +02:00
b6eebcd704
small fixes (testing P=+1)
2020-05-19 07:57:40 +02:00
b200894a40
bugfix and further test
2020-05-19 07:57:40 +02:00
3dc90ddb94
use the formula from the paper, not from the reference implementation
...
a few multiplications should be faster than a transpose
2020-05-19 07:57:40 +02:00
a25dd1c438
cleaning
2020-05-19 07:57:40 +02:00
743e91a78d
cleaning
2020-05-17 08:01:34 +02:00
652ece6bb3
fix: wrong capitalization
2020-05-17 07:25:17 +02:00
2550447169
Merge branch 'development' into docstring-sphinx-adjustments
2020-05-17 00:10:58 +02:00
a90865c877
non-vectorized versions not needed anymore
...
using them only for testing purposes
2020-05-17 00:10:18 +02:00
9ba419c2c3
Merge branch 'development' into vectorize_rotation
2020-05-16 20:58:06 +02:00
a4dfd7fc74
missing tests
2020-05-16 17:23:05 +02:00
044f069437
bugfix: selected wrong data
2020-05-16 17:06:55 +02:00
a279785149
Merge branch 'development' into misc-improvements
2020-05-16 17:01:48 +02:00
61ac40c259
more tests
2020-05-16 13:54:53 +02:00
19638168e6
more sensible type checking and errors
2020-05-16 13:23:32 +02:00
9fa1539163
using new names
2020-05-16 11:17:12 +02:00
235f3c0df7
bugfix: copy and paste error
2020-05-16 11:16:52 +02:00
e2ba294b75
bugfix: wrong variable
2020-05-16 09:40:32 +02:00
2dc46b783a
simplified and tested
2020-05-16 00:58:40 +02:00
dc508cdfce
Merge remote-tracking branch 'origin/misc-improvements' into vectorize_rotation
2020-05-15 23:25:42 +02:00
3fd868dc45
Merge branch 'development' into vectorize_rotation
2020-05-15 23:25:36 +02:00
b5b9bfaa99
need space at end of definition list
2020-05-13 11:36:16 +02:00
66b928c5af
using doctest style
...
https://docs.python.org/3/library/doctest.html
https://numpy.org/doc/stable/docs/howto_document.html#sections (section
15)
2020-05-13 10:47:49 +02:00
6f3b526811
Merge branch 'development' into docstring-sphinx-adjustments
2020-05-13 10:38:45 +02:00
90f93d2399
Merge branch 'integrate-lambert' into 'development'
...
Integrate lambert
See merge request damask/DAMASK!166
2020-05-12 23:36:08 +02:00
6928a8290f
less whitespace,
...
alingment only within one vector/tensor
2020-05-10 13:02:26 +02:00
c8701a4665
Cleanup/better readability
2020-05-08 12:15:10 +02:00
b75e98ca3f
forgotten debug statements
...
+ polishing of XDMF output
2020-05-07 19:12:05 +02:00
c2b4f5516e
DADF5_postResults tries to combine datasets, this does not work
2020-05-07 00:14:14 +02:00
fcd0028b83
avoid line length limit (maximum line length 182 > 132
2020-05-06 14:33:04 +02:00
d977f2ad25
already merged
2020-05-06 14:26:54 +02:00
26f55781ae
merge test into gridFilters
2020-05-06 14:26:15 +02:00
a122a307b9
div test done
2020-05-06 14:14:18 +02:00
d4091a21a8
grad test done
2020-05-06 13:05:53 +02:00
8b4baecdee
better looking test fields
2020-05-06 12:54:24 +02:00
bd518b2806
test_curl done
2020-05-06 12:44:56 +02:00
9626833339
Merge branch 'development' into pytest-curl-div-grad-2
2020-05-05 22:45:30 +02:00
ef4a4dad4a
shape property and numpy-like broadcasting
...
this makes it easy to apply a single rotation to a field
2020-05-05 14:44:08 +02:00
eeb0df3a55
do not store absolute path
2020-05-05 10:42:54 +02:00
307debebd4
Correct shapes for gradient calculations
2020-05-05 10:22:23 +02:00
31c397255d
equivalent (for a valid DADF5 file) but faster
2020-05-05 10:18:48 +02:00
0650f46ab1
Tests for gradient
2020-05-05 10:13:30 +02:00
14cdc031e0
write XDMF files
...
the limitation to scalar, 3-vector and 3x3-tensor comes currently from
XDMF/vtk/paraview
extension to multiple constituents and unstructured meshes might be
possible
2020-05-05 09:57:22 +02:00
6e99956b58
Merge branch 'development' into misc-improvements
2020-05-05 09:22:53 +02:00
5f3f87cd68
vectorizing cubochoric conversions
2020-05-04 17:43:38 +02:00
7d1e0850ab
test + resulting bug fix
2020-05-03 17:04:03 +02:00
5d4b554b00
WIP: vectorizing
2020-05-03 07:48:13 +02:00
c241eaec15
rely on correct input data
2020-05-03 07:23:46 +02:00
f0bb50b97d
vectorized rotation function
2020-05-02 15:22:17 +02:00
c7a77ebc26
Merge branch 'development' into integrate-lambert
2020-05-02 09:21:42 +02:00
2df78e4e2f
vecorized pyramid function for lambert projection
2020-05-02 09:17:31 +02:00
b88f5ec0c8
clean up
2020-05-01 14:53:40 +02:00
ce9bdc50a4
common variable names
2020-04-29 14:46:58 +02:00
9e79935add
Merge branch 'development' into less-shell-scripts
2020-04-28 20:43:16 +02:00
9273c88782
[skip ci] WIP: migrating from PRIVATE repo
2020-04-28 09:42:27 +02:00
2d14790863
the result of a differential operator operating on a constant field is 0
2020-04-27 05:08:47 +02:00
6864b9525d
go back to original dir as soon as possible
2020-04-26 14:52:27 +02:00
f02c77b6d0
more reasonable tolerance
...
still relatively high because ctf files store position with constant
number of digits and floating dot. Hence, the precision is very low
2020-04-24 20:01:57 +02:00
1610d5a5d2
Merge branch 'development' into misc-improvements
2020-04-24 20:01:40 +02:00
707324887f
inform the user about planned functionality
2020-04-24 06:52:09 +02:00
042f64200c
Merge branch 'development' into vectorize_rotation
2020-04-24 06:31:14 +02:00
898cf42aca
Merge branch 'fix-grid-convention' into 'development'
...
Fix grid convention
See merge request damask/DAMASK!160
2020-04-23 19:02:23 +02:00
cc3fa156cf
support change of directory one object has been created
2020-04-23 16:29:20 +02:00
a0b7c51bec
less strict tolerances
...
grid position reported by EBSD has only a few decimal places, so
rounding errors occur
2020-04-22 23:32:34 +02:00
8ba547a1b5
no need for an extra file
2020-04-22 13:23:50 +02:00
a39e6b7af9
hide internal variables
2020-04-22 13:12:30 +02:00
3621dddd66
test deviatoric part for known analytic solution
2020-04-22 09:16:53 +02:00
53b8c1c893
simplified
2020-04-22 08:58:43 +02:00
a8c6fdd9ba
for the sake of completeness
2020-04-22 07:40:02 +02:00
7efe14be35
Merge branch 'development' into vectorize_rotation
2020-04-21 19:29:30 +02:00
97a5880d76
ensure correct shape
2020-04-21 13:22:55 +02:00
75d7238376
vectorized as_XXX
2020-04-21 12:27:50 +02:00
ae3eca5f98
fix for vectorized from_random
2020-04-21 12:08:16 +02:00
ac75b9e4ca
improved reporting + test
2020-04-21 11:17:15 +02:00
23fc58699f
vectorize Rotation.fromXXX functions
2020-04-21 10:55:45 +02:00
4a05cdbbbb
copy and paste error
2020-04-21 03:26:26 +02:00
528378eba2
polishing/bugfix
...
* HDF5 data has x fast, therefore reshape needs to be aware of 'F' order
* Datatype for True/False is 'bool' in python, not 'Boolean'
2020-04-20 22:51:51 +02:00
00cb17ccfa
commenting
2020-04-20 22:47:55 +02:00
93db1b37ca
some useful information
2020-04-20 22:32:13 +02:00
25d29bf438
no need for Fortran order forward/backward
2020-04-20 20:24:55 +02:00
1ccda22ae3
nothing to flatten here
2020-04-20 20:16:25 +02:00
4db91fff03
simplified
2020-04-20 20:14:27 +02:00
f519e62cd5
testing data layout checks
2020-04-20 13:56:33 +02:00
02dde3c255
test also invalid operations
2020-04-20 13:10:13 +02:00
9979eb58f4
consistent layout for grid data
...
has now always the shape ([x,y,z,...]) with x fastest. For conversion from or
to linear layout ([x*y*z,...]), e.g. storage in ASCII table, reshape needs
to have the 'F' option.
Credits to Vitesh and Fran for pointing this out.
2020-04-20 13:09:59 +02:00
bce5ed62d5
polishing
2020-04-20 10:13:15 +02:00
e3958263e3
Merge branch 'development' into misc-improvements
2020-04-15 21:03:51 +02:00
03aa6f9c80
Merge branch 'vectorize_rotation' into development
2020-04-14 19:34:11 +02:00
d3eba41519
[skip ci] fixed bug of double execution of np.degrees in asAxisAngle
2020-04-14 12:22:41 -04:00
69857176b2
search and replace error
2020-04-14 15:33:20 +02:00
93c75cada3
numpydoc style
2020-04-12 15:38:38 +02:00
aaeec16c66
proper indentation for sphinx
2020-04-12 15:34:29 +02:00
b6b98bd14f
more meaningful
2020-04-12 15:20:09 +02:00
c6c1878b13
asterisk is the emphasize sign for restructured text
...
not really needed here
2020-04-12 15:19:32 +02:00
3d10266fbc
similar style as for other conversions
2020-04-12 01:29:11 +02:00
04fbc38a4b
keep namespace clean and avoid overwriting in fromXXX functions
2020-04-12 01:19:11 +02:00
f41a47ce8b
polishing and slightly stricter tolerances
2020-04-11 23:27:25 +02:00
c0c37fe6a5
polishing
2020-04-11 20:42:46 +02:00
c57f96cd6e
also missing
2020-04-11 18:32:06 +02:00
8c61f67e34
cleaning
2020-04-11 18:24:54 +02:00
296a75d452
where not needed
2020-04-11 18:00:59 +02:00
fac33ec408
polishing
2020-04-11 17:23:54 +02:00
51104bfc13
do not transpose for the standard case
2020-04-11 17:19:12 +02:00
cb9daccdd7
homochoric representation vectorized
2020-04-11 16:14:40 +02:00
99655c9f61
more vectorized functions
2020-04-11 13:59:16 +02:00
4e759d6c98
more tests for orientation conversion
...
ensure that all parameters are within range and check if
multidimensional arrays at least run
2020-04-11 12:37:21 +02:00
3bfa2d679c
simpler/correct logic for eu2om
2020-04-11 11:36:37 +02:00
59b0a6e825
tuples not needed/avoid eval
2020-04-10 13:07:05 +02:00
656c0199cf
sorted and make explicitly available what we need
2020-04-10 12:32:33 +02:00
9837390406
do not clutter namespace
...
we do not need damask.util.np etc
2020-04-10 12:30:39 +02:00
9c0ea13e4f
Merge branch 'development' into misc-improvements
2020-04-10 08:14:33 +02:00
bab3581b11
need to transpose eigenvectors to find the correct one
2020-04-09 15:01:01 +02:00
e502573e05
polishing
2020-04-09 14:20:43 +02:00
b025c1838e
simplified
2020-04-09 12:52:12 +02:00
cbfde73a29
more testing and related fixes
2020-04-09 07:40:20 +02:00
43e7639f77
WIP: implementing orientation matrix conversions
2020-04-09 00:47:43 +02:00
da30fb8396
qu(aternion) and eu(ler) vectorized and tested
2020-04-09 00:35:40 +02:00
464620b796
vectorized conversion from ax(is angle)
2020-04-08 21:24:59 +02:00
2a063b3bb5
relaxed tolerance not needed
2020-04-08 20:23:05 +02:00
59e0041fd7
more scatter, slightly reduced tolerance
2020-04-08 19:30:50 +02:00
3cd8f3d9a0
testing special orientations with scatter
2020-04-08 18:38:57 +02:00
1ba01ba0db
adjusting tolerances
2020-04-08 18:15:50 +02:00
f365ae104d
adjusting tolerances
2020-04-08 17:55:05 +02:00
10d5b2e791
testing some special cases
2020-04-08 13:41:46 +02:00
8f88480790
better readable error messages
2020-04-08 12:59:34 +02:00
b6f5548d8a
correct normalization at the corners
2020-04-08 12:23:28 +02:00
4e06e9a410
improved numerical stability for corner cases
2020-04-08 11:52:26 +02:00
ccf62ede52
bugfix for Cubochoric
...
forward and backward mappings are different
2020-04-08 11:41:42 +02:00
fbd61fda99
ignore comments
2020-04-02 11:54:34 +02:00
01818cba80
tuples not needed for single arguments
2020-03-31 12:44:39 +02:00
6ef7410e5a
testing VTK wrappers
2020-03-31 11:04:06 +02:00
2f52165e0a
for test coverage reports using pytest
2020-03-30 22:14:45 +02:00
396d428af7
bugfix: works for all cuboids, not just cubes
2020-03-29 23:09:43 +02:00
e334674a06
test bycristal tessellation
2020-03-29 20:28:54 +02:00
9c90aa5acb
polishing
2020-03-29 20:07:09 +02:00
e61c1a027b
avoid detour via shell
2020-03-29 19:12:23 +02:00
bbce3456e8
advise from pylint
2020-03-22 22:30:38 +01:00
1dfdd264b7
small flaws detected by pylint
2020-03-22 16:31:14 +01:00
b6d50db177
do not use name of function
2020-03-22 16:21:49 +01:00
1e178287fe
4 space indentation
2020-03-22 16:13:35 +01:00
76caf422aa
bugfix: wrong indentation
...
strange that python has accepted that
2020-03-22 15:59:25 +01:00
3873a3d20d
restoring working structure for config submodule
2020-03-21 22:17:07 +01:00
4decae967a
nothing to inherit ..
2020-03-21 20:18:46 +01:00
c6025925ac
relative imports within damask package
2020-03-21 20:17:50 +01:00
c5e956f386
solver submodule structure working again
2020-03-21 20:14:15 +01:00
bcf3650211
slightly shorter.
...
w/o transpose, this seems to be more memory efficient
2020-03-21 19:40:49 +01:00
71da974bdc
quick prospector fixes for deprecated class
2020-03-21 18:29:42 +01:00
67f64b7a7a
polishing
2020-03-21 18:01:26 +01:00
20a06840b0
works also for arrays ...
2020-03-21 11:07:21 +01:00
2ad86e4202
shortened
2020-03-20 23:47:54 +01:00
eb66db9c36
Merge branch 'no-python-namespace-clutter' into MiscImprovements
2020-03-20 23:46:37 +01:00
76984a4dbd
more sensible check
...
works also for numpy arrays. Not sure why the old way is considered to
be "pythonic", I think it can just cause trouble
2020-03-20 23:42:23 +01:00
4d4f321872
following python convention
2020-03-20 08:49:33 +01:00
0556827f29
less error prone
2020-03-19 20:19:47 +01:00
892b7eee98
consistency check and new test
2020-03-19 17:34:49 +01:00
705694b97c
fix for test
2020-03-19 15:54:57 +01:00
e390982be7
clean first level structure
2020-03-19 15:19:11 +01:00
899cc913c4
python style names
2020-03-19 15:09:05 +01:00
327899890a
this works for internal
2020-03-19 15:06:25 +01:00
9bb0608187
maybe this is the cleaner way
2020-03-19 14:40:30 +01:00
c1d82197ad
cope with integers
2020-03-19 13:27:23 +01:00
0ebc5ab60e
no need to import modules, hide unwanted functions
2020-03-19 13:16:32 +01:00
27532cfa4e
small fixes
2020-03-19 12:03:55 +01:00
91e728d065
polishing
2020-03-19 11:30:36 +01:00
Martin Diehl