de316f1afe
Merge remote-tracking branch 'origin/development' into even-more-HDF5-postprocessing
2019-09-14 12:48:42 -07:00
b85ac11c49
implemented ideas from discussion with Philip
...
group matching unified and with wildcard support
time step handling should become more convenient (WIP)
add_norm can not compute abs of scalar, added function for that
general polishing here and there
2019-09-14 09:07:23 -07:00
c13db4b3ca
renaming
...
on_air/active are not clear. visible seems to be the most appropriate
name
2019-09-13 21:49:22 -07:00
a6567e0cc6
safer to use functions
...
don't mess with attributes of the object, they might be renamed
2019-09-13 21:41:35 -07:00
002383afc2
solved problem with postprocessing
...
- to not 'try' with h5py library, it might have another 'try'. Check
explicitly for empty argument
also some polishing
2019-09-13 16:01:30 -07:00
52904a81dc
taking prospector complaints serious
2019-09-13 06:49:25 -07:00
a3c6f6682e
using eigh should ensure orthogonal eigenvectors
2019-09-13 06:42:01 -07:00
890a6cf42f
avoid floating point comparison and simply play it safe
2019-09-13 06:40:41 -07:00
0497b58629
use existing functionality
2019-09-13 06:38:22 -07:00
cd6a4d1cfd
that's all we need
2019-09-13 06:37:47 -07:00
66d8a3e601
stretch is symmetric (play it safe here)
2019-09-13 06:35:48 -07:00
79d2432c6c
R not needed
2019-09-13 06:33:00 -07:00
49b3cd2145
transpose evuivalent for rot but faster
2019-09-13 06:32:05 -07:00
462bb07efd
Merge branch 'development' into even-more-HDF5-postprocessing
2019-09-11 16:29:44 -07:00
926217fcb6
added possibility to reduce rotation to specific fundamental zone, and to output 3-dim Rodrigues vector
2019-09-10 15:09:27 -04:00
d446248d75
also ouptut materialpoint results if requested
2019-07-15 17:07:04 -07:00
b6bb8a4650
simple strain calculation for DADF5
...
further enhancement requires to give optional arguments to
add_genericpontwise
2019-07-06 21:41:29 -07:00
a8ed982706
[skip ci] better name
2019-06-15 07:31:30 +02:00
eb8be13203
missing import
2019-06-14 17:27:00 +02:00
1cf9c59850
standardizing
...
import follows PEP style guide, encoding not needed for python3
2019-06-14 13:03:30 +02:00
4ff3efb1a5
to 'stack' tables
2019-06-13 23:14:40 +02:00
bffeaa980d
restored Martin's logic, not clear why seemed to be broken with PE's former tests...
2019-06-03 14:43:23 -04:00
8d52a3d52a
polishing of geom_rescale; adopted modified testing reference
2019-06-03 14:15:23 -04:00
2870fdb25b
fixed buggy version
2019-06-03 13:39:45 -04:00
89e4bc800c
removed default size to adjust to changes in geom-class
2019-06-03 13:38:48 -04:00
60031cc806
changed periodic option to reflect to better reflect what happens
2019-06-03 13:35:37 -04:00
7ea417d585
rotated geometry maintains center of gravity
2019-06-03 13:30:14 -04:00
615ff4ed06
[skip ci] vectorized
2019-05-31 23:26:32 +02:00
bf27505faa
Merge branch 'development' into geometry-class
2019-05-31 16:21:50 +02:00
02671c5c03
bugfix
...
shoud now work for any possible combination of new and old grid and
offset
2019-05-31 15:58:47 +02:00
979145f023
vectorized
2019-05-31 10:27:26 +02:00
46f0ad052e
direct support for vtk output
...
- geom_check can now handle multiple files
- microstructure index is stored as integer in vtk file
2019-05-30 15:35:45 +02:00
08052737cf
if grid is an option, it is a tuple
...
tuples do not have the prod() function
2019-05-30 14:28:31 +02:00
c2a5f37818
round to reasonable precision
...
without symmetry, there are 36000**3 = 46656000000000 orientations
2019-05-30 14:11:54 +02:00
bf60cffab5
cleaning
2019-05-30 14:07:49 +02:00
d0c7f8b934
texture is typically the more interesting information
...
therefore, but it to the top
2019-05-30 14:05:45 +02:00
8380071564
using geom class
...
- dropped the use of the material class as it does not allow to have
empty phase and crystallite. The material.config class needs a severe
refurbishing (no crystallite, use orderedDict instead of hand written
solution, drop of texture components). Probably best solution is to
postpone this until we have a yaml/json reader for Fortran.
2019-05-30 13:30:38 +02:00
7d07a3752f
polishing
2019-05-30 13:30:18 +02:00
461611cde7
polishing
2019-05-30 11:26:47 +02:00
49c3903cc7
explicit loop for simpler code
...
- no invalid combintations any more (allow to move the original
microstructure out of the new canvas)
- handling of origin needs discussion. When we want to recover the old
behavior, the origin might be located outside of the new geometry
2019-05-30 11:26:07 +02:00
e974bb9c43
similar structure for building blocks
2019-05-30 10:45:17 +02:00
510b55df50
several improvements
...
- more error checking
- order of points can be arbitrary also for microstructure input
- grouping of same orientation/phase combinations
2019-05-30 10:33:01 +02:00
931fa9d36a
standardized and cleaned
...
-write to file if given
-type casting is done in the geom class
2019-05-30 10:20:07 +02:00
07276d511c
modern python formatting
...
- 2 digits should be precise enough for euler angles
- no need to pad grain ID with leading zeros
2019-05-30 10:03:55 +02:00
73df615ff3
numpy meshgrid can do this now
2019-05-30 09:45:30 +02:00
4e0e5a2329
new python formatting style
2019-05-30 09:41:22 +02:00
f30eda0267
no need to loop over files
...
will procude the same file over and over again
2019-05-30 09:32:37 +02:00
cdc8338347
full (not periodic) mirroring is geom_mirror default behavior
2019-05-29 20:22:29 -06:00
d79f0c6290
replace geom_canvas --blank with geom_fromScratch
2019-05-29 20:02:06 -06:00
fd9801ba09
StringIO not needed
2019-05-29 19:44:38 +02:00
d7e8a66746
polishing
2019-05-29 14:18:11 +02:00
16bd5294aa
loop order as intented
2019-05-29 14:06:39 +02:00
78f30684f8
moderized
...
needs some polishing with respect to array orders
2019-05-29 09:40:56 +02:00
6836a2eae8
better readable
2019-05-29 08:04:01 +02:00
dfc2b47abc
better readable
2019-05-29 08:01:00 +02:00
8ee23b37b2
should not be part of the repo
2019-05-29 07:52:44 +02:00
bb6f54963a
save some memory (avoid copies if not needed)
2019-05-29 07:49:43 +02:00
9f68923038
restored old behavior
...
save some ressources by avoiding copies.
much slower than old version, better cast formula into meshgrid again
2019-05-29 07:38:11 +02:00
2eb964b1ea
simplified
...
needs some manual checking and proper test
2019-05-28 23:49:11 +02:00
100a2031d3
[skip ci] no white space needed
2019-05-28 07:55:24 +02:00
1f56ac6a4a
streamlining and bugfixing of geom-class
2019-05-27 22:45:34 -06:00
b69f0efbbc
improved and simplified reporting
2019-05-27 22:00:26 +02:00
5abcca50ee
Merge branch 'more-HDF5-postprocessing-cleaned' into development
2019-05-27 12:17:12 +02:00
59c6c5cfe4
not needed anymore
...
essentially, (gauss) is an Euler angle triplet
2019-05-27 10:49:50 +02:00
6e06764e2d
using (enhanced) central functionality
2019-05-27 08:38:02 +02:00
d9ab87cfde
crystallite will be removed soon, error handling is done by geom class
2019-05-27 08:35:24 +02:00
5cf63bbbc3
vtk 7 is out for more than 3 years
2019-05-27 08:34:36 +02:00
b5cec797c0
cleaned
2019-05-26 23:03:31 +02:00
c8dfba89e5
using class
...
still a very complex script
2019-05-26 22:49:05 +02:00
15d5a7ae28
don't access attributes directly
2019-05-26 22:08:14 +02:00
f251cdb746
simplified
2019-05-26 22:07:50 +02:00
af493cf9fd
using class
...
needs more memory, but should be faster and is better readable
2019-05-26 21:32:08 +02:00
99da46fda8
polished
2019-05-26 20:36:41 +02:00
657a30c2f5
using new functionality
2019-05-26 18:51:27 +02:00
feb2340935
self-reporting functionality for updating
2019-05-26 17:58:54 +02:00
34f7bbe2a0
'blank' option does not fit to flow of script
...
seeds_fromRandom -N 1 | geom_fromVoronoiTessellation -g 30 30 30 -s 1 1 1 > file.geom
or a few lines of python code give the same results
2019-05-26 13:06:22 +02:00
e7b8ae08d0
polishing
2019-05-26 12:14:48 +02:00
974f67ffdc
no frills
2019-05-26 12:06:51 +02:00
be3513d1e0
polishing.
...
python imports follow PEP8
2019-05-26 09:49:56 +02:00
a242382bed
Merge branch 'geometry-class' of magit1.mpie.de:/damask/DAMASK into geometry-class
2019-05-26 09:19:29 +02:00
b13aa799c3
updated error message
2019-05-25 17:00:41 +02:00
c89d344236
polishing
2019-05-25 13:51:05 +02:00
2b7d95f800
was accidently commited
...
gives different results due to interpolation from scipy
2019-05-25 12:09:09 +02:00
c92969787a
geom Class was updated
2019-05-25 11:56:06 +02:00
94f85b7f33
better readable
2019-05-25 10:45:58 +02:00
fc1f65c34e
works for dtype='float'
2019-05-25 10:36:46 +02:00
875643c363
same style
2019-05-25 10:24:45 +02:00
17eb0d1b20
using new class
2019-05-25 08:48:44 +02:00
4788fc6046
making use of new class
...
@philip: 1D arrangement needed?
2019-05-25 08:37:02 +02:00
6c7f7c77da
specifying non-existing or invalid files is an user error
...
this is the standard behavior for common unix tools, no need to make an
exception here
2019-05-25 08:24:32 +02:00
cf374a04dc
using new class
2019-05-25 08:21:00 +02:00
420abfa162
use new class
2019-05-24 22:34:27 +02:00
eb13fbc0ce
streamlined geom-info reporting; added --float option to some scripts; hardened against NaN; "microstructures" now reports uniques not max
2019-05-23 13:03:24 -04:00
e6cec6ecbe
added option to reverse inside/outside of primitive body
2019-05-23 12:49:03 -04:00
339b86f784
bugfix + more verbose reporting
2019-05-16 11:44:03 +02:00
9f7fa5393a
fix for scalar datasets
2019-05-16 09:31:13 +02:00
4599d1c34e
does not match
...
node does not make sense, is weirdly numbered
2019-05-16 00:42:22 +02:00
3c0c0a2cd1
more flexible in selecting data
2019-05-16 00:27:06 +02:00
998789528c
Merge branch 'HDF5-out-homog-2' into 'development'
...
Hdf5 out homog 2
See merge request damask/DAMASK!78
2019-05-13 17:34:59 +02:00
feb1465803
Better to have actual increment num in output file
2019-05-08 17:31:18 +02:00
0cc2b1214d
store requested data in ASCII file
2019-05-07 15:18:12 +02:00
1eaf67ad82
store results in subdirectory
...
defaults to postProc
2019-05-07 13:30:05 +02:00
f65423fe9f
rudimentary postResults for HDF5 output
...
only meant for compatibility during transition
2019-05-05 10:09:23 +02:00
8a9baf6d78
preparing output of mech_homog to HDF5
2019-04-30 18:45:38 +02:00
d74599d39a
Merge branch 'HDF5-postprocessing' into 'development'
...
Hdf5 postprocessing
See merge request damask/DAMASK!72
2019-04-29 23:24:42 +02:00
6b7fd6b7ea
visualizing data from DADF5: first prototype
2019-04-18 11:58:17 +02:00
7177813710
adding data to geometry
2019-04-17 19:57:16 +02:00
8eb1a35dfb
first version of a library to parse HDF5
...
- preliminarly called DADF5 (DAMASK HDF5)
- script to write (empty undeformed) geometries is also added
2019-04-13 11:25:53 +02:00
0c6fde97f9
wrong positions for point visualization
...
- now the cell centers are at the centers of the cells for cell
visualization
2019-04-13 00:42:05 +02:00
ed7423a3d6
bug fixes
2019-03-10 08:16:01 +01:00
67619fa92a
consistent definition of axis angle
2019-03-09 20:18:28 +01:00
433281f71d
following Rowenhorst convention
2019-03-09 19:58:17 +01:00
0d08659b2a
general cleaning
2019-03-09 11:11:40 +01:00
60feb96afd
let vtk decide on the file extension
2019-03-09 11:11:40 +01:00
5ab8e50d09
consistent with reference paper
2019-03-08 19:07:19 +01:00
b84d4f1b6a
improved error handling/clearer messages
2019-03-05 10:58:57 +01:00
e030038b73
[skip ci] added --blank option to create fresh canvas (from nothing)
2019-02-27 19:37:38 -05:00
c706ca5ba3
no progress bars in quite mode
2019-02-26 21:22:49 -05:00
f3d2803443
addMises failed for single run of either --stress or --strain
2019-02-25 19:29:12 -05:00
2089726800
corrected output extension of vtk files to reflect binary format
2019-02-25 18:48:40 -05:00
e401c21266
dropped obsolete option --inplace from geom_check
2019-02-25 18:30:45 -05:00
e88182b007
improved converte, now with test
...
still needs to figure out how +P is handled
2019-02-24 14:39:34 +01:00
0d7fd587e3
direct translation from DREAM.3D to DAMASK geom
...
needs test
2019-02-24 12:59:10 +01:00
95be7ef938
directly convert to geom file + material config
2019-02-24 10:33:30 +01:00
903edcd429
do not patronize the user, rather give hints
2019-02-24 10:31:08 +01:00
d3ac3cc0f5
using new Orientation class
2019-02-24 08:34:20 +01:00
9dc8dff4b1
cleaning and adding compatibility layer
2019-02-23 22:35:04 +01:00
9fa2553af4
task for DREAM.3D if needed
...
pointwise takeover should not be a problem anymore as reading in takes
no time (at least in comparison to addGrainID)
2019-02-23 22:14:55 +01:00
a8e8b75cc0
use new rotation class
2019-02-23 22:13:24 +01:00
fff377de7f
initial simplification.
...
Should be able to generate from table containing either <microstructure>
or <texture> and <phase>
2019-02-23 22:06:31 +01:00
b3455c825e
transition to new orientation class
...
forward-backward conversion quite stable
2019-02-23 21:49:05 +01:00
e4bb61c9d9
transition to new orientation class/DREAM.3D
2019-02-23 11:37:09 +01:00
93ae5cbd07
Merge remote-tracking branch 'origin/development' into 10-consistent-orientation-conversions-3
2019-02-22 23:05:36 +01:00
3bec76e781
can now deal with 1x1x1 geoms
2019-02-19 12:06:46 -05:00
25727bfa52
using CamelCase
2019-02-19 10:32:18 +01:00
43a451b2e1
inplace not useful
...
use shell script if you want to keep an backup of your old data
2019-02-18 14:36:04 +01:00
27ebe1f665
improved documentation
2019-02-17 08:17:40 +01:00
5c20609e81
more verbose help, drop support for really old vtk
2019-02-16 22:20:44 +01:00
802ef6fe5c
more precise help
2019-02-16 18:25:41 +01:00
c6781e415a
using default notation for vector access
2019-02-16 18:23:00 +01:00
0b1bfdfd4e
was only working with python2
2019-02-16 18:17:05 +01:00
29fc53fdcb
more specific about invocation
2019-02-16 17:41:56 +01:00
fa003e8077
small adjustments for autodoc
2019-02-16 15:26:21 +01:00
4ce151c967
camel casing (easer for foswiki)
2019-02-15 23:22:51 +01:00
0cc4e582e4
Merge branch 'development' into 26_autodoc-2
2019-02-15 20:47:14 +01:00
566099ad81
automatic documentation for some post processing scripts
2019-02-15 18:52:47 +01:00
dc133344b6
[skip ci] migrated to python3 compatibility
2019-02-14 18:44:06 -05:00
d58c3008ae
fixed too long line in addLinked
2019-02-14 18:31:22 -05:00
742d58cfce
added ASCIItable tests to CI pipelining
2019-02-14 18:24:09 -05:00
c4cb35891c
all fine with python3
2019-02-14 22:56:39 +01:00
889cfc8ba0
vtk script only work with python3 on new testing
2019-02-14 01:39:54 +01:00
217024667b
forgotten comma
2019-02-12 11:30:43 +01:00
608852df83
rotation paper has angle as last component
2019-02-12 10:58:38 +01:00
7da8980cc0
bugfixes: wrong shape, wrong conversion
2019-02-12 09:04:35 +01:00
336a80091f
rodrigues is 4-vector with rotation being the last component
...
established a single source of truth for length
2019-02-12 08:59:26 +01:00
97ac437686
more user friendly constructors
2019-02-12 08:14:27 +01:00
ef3fc0b58a
bugfix: wrong array indexing
...
rotation of meshgrid tuple implemented
2019-02-12 07:42:46 +01:00
48b0307fab
using new rotation class
...
cannot rotate matrices (3,3) and (3,3,3,3) at the moment
2019-02-12 00:27:13 +01:00
74956c0290
avoid error for empty "name"
2019-01-23 20:59:07 -05:00
da115ca9d4
probably never used and outdated (python2.7)
...
doing the same conversion via DREAM.3D will be available soon
2019-01-16 17:51:37 +01:00
c5dabbb68f
correct comment sign
...
the # indicates the end of a list
2019-01-09 16:31:00 +01:00
0dca8d2740
compatible to python 3 and mentat >= 2017
2019-01-09 16:28:21 +01:00
1192f16582
Merge remote-tracking branch 'origin/development' into 56-parallel-hdf5
2019-01-06 20:56:36 +01:00
7768c5874b
simpler interface for progress bar
2019-01-05 10:41:49 +01:00
c00d00c219
Merge remote-tracking branch 'origin/development' into misc-improvements
2019-01-05 09:22:41 +01:00
3c5df0a4a4
[skip ci] viewTable acknowledges requested output type(s)
2019-01-04 16:34:21 -05:00
bcd4288f1e
[skip ci] groupTable according to unique values in more than one column
2019-01-03 18:25:28 -05:00
b5d62c8e29
[skip ci] print estimated remaining processing time for postResults
2019-01-03 11:31:04 -05:00
835e3f95a5
[skip ci] was not used
2018-12-31 08:05:56 +01:00
6f40989465
order was randomized when creating dict
2018-12-31 07:18:45 +01:00
a992b8b1f5
random order caused test to fail
...
rather a workaround, but since HDF5 is coming...
2018-12-30 11:41:22 +01:00
9bdd4d1d68
added <!skip> line to stop config parser from trying to interpret rest of geom description---huge speedup!!
2018-12-20 17:22:29 -05:00
25a80723c0
numpy interface changed to be strict about 2D array shape in histogram
2018-12-20 17:14:55 -05:00
1ef82e351b
Merge branch 'orientationClass_with_negative_P' into development
2018-12-20 20:43:00 +01:00
7df6dfbf3f
renamed "showTable" to "viewTable" to avoid clashing with astropy.table module
2018-12-18 15:10:26 -05:00
5d7f930592
math.isclose does not exist for older versions
...
np.isclose does the same
2018-12-17 20:04:16 +01:00
3bab08fdeb
Merge branch 'development' into 56-parallel-hdf5
2018-12-12 07:46:02 +01:00
1f2fbbee21
consistent name
2018-12-10 09:38:57 +01:00
767650e002
more general option + improved descriptions
...
hopefully more user friendly
2018-12-10 09:27:39 +01:00
d219842ad8
[skip ci] consistent tolerances
2018-12-09 20:19:33 +01:00
60686fb72c
[skip ci] improved reporting
2018-12-09 18:05:37 +01:00
bc04b83d8a
no reason for using python2.7
2018-12-09 14:09:26 +01:00
08ac49fac0
line too long
2018-12-09 13:21:56 +01:00
130fac21c6
cleaning
2018-12-09 13:15:59 +01:00
d43dfa569b
lines too long
2018-12-09 12:37:27 +01:00
65165ffc5e
assumed wrong type
...
quaternion should have lenght one
2018-12-09 12:35:32 +01:00
697d97cd38
cleaned
...
legacy format was for pre-MPI output where the extra bytes at start and
end of a chunk (Fortran out) had to be handled manually
2018-12-09 12:30:07 +01:00
5054291557
python3 compatible status message
2018-12-09 12:25:31 +01:00
741032339e
time/math/datatype are not used/defined any more
2018-12-09 11:05:35 +01:00
aefa006d09
simplified
...
assume quaternions as input
2018-12-09 10:53:53 +01:00
213e31ff87
string was split into letters
2018-12-09 10:53:25 +01:00
d9b47f09bc
modernized
...
split arguments logically, assume 3-vector for coordinates
2018-12-09 10:52:37 +01:00
7eaea64d09
python3 compatible
...
hope that the new bar causes less trouble than the background message
2018-12-09 09:08:33 +01:00
6b73840853
works with python3
2018-12-09 08:07:40 +01:00
83a3628765
bug fixes
2018-12-09 07:58:42 +01:00
d145b257aa
new version of numpy complain about overlong range argument
2018-12-09 07:57:05 +01:00
4130cbcffa
simplified
...
- always use quaternion as input for orientation
- addAPS34IDEstrainCoords uses table functionality
- rotateData can figure out whether input is vector or tensor
2018-12-09 07:10:31 +01:00
3f8726464d
addOrientations now checks its input for convention conformity
2018-12-08 13:22:22 -05:00
eaf2c77903
Merge branch 'orientationClass_with_negative_P' of magit1.mpie.de:damask/DAMASK into orientationClass_with_negative_P
2018-12-07 22:07:22 -05:00
ac45a9e2d3
more output options, frame input changed to "lab expressed in crystal"
2018-12-07 22:03:14 -05:00
e8f4dc4c9f
Merge branch 'orientationClass_with_negative_P' into development
2018-12-06 07:26:08 +01:00
ee7e4ee0d9
python3 has different encoding syntax
2018-12-06 06:27:07 +01:00
a6d4c73de0
added list of map and introduced "quat" keyword in quaternion init
2018-12-05 10:20:05 -05:00
c0f7ae2798
updated scripts that still used formerly valid object properties of quaternions
2018-12-05 09:07:29 -05:00
1d7172c971
adopted more intutitive alternative of P=-1 from Rowenhorst_etal2015
2018-12-04 17:05:35 -05:00
8f26fc9358
Merge remote-tracking branch 'origin/development' into 56-parallel-hdf5
2018-12-04 22:34:29 +01:00
7c1e2e256c
os.urandom returns byte, not string in python3
2018-11-24 10:07:47 +01:00
c0ad496764
eigenvalue solver seems to depent on python version
2018-11-22 23:13:49 +01:00
76accdeaf2
all orientations are passive now
...
.conjugated() not needed anymore.
Rest is polishing
2018-11-22 18:45:01 +01:00
9b82b7fadd
removed obsolete keyword "Bunge" from asEulers() method
2018-11-22 11:51:53 -05:00
ba5b623f14
Merge branch 'development' into improved-HDF5
2018-11-18 19:44:36 +01:00
fcb14f6099
was never used
2018-11-18 12:04:08 +01:00
d53b01ab56
also works for python3
2018-11-18 08:04:52 +01:00
8ee2de61ea
map returns no list any more
2018-11-17 12:12:20 +01:00
257d9d5350
needs to be list
2018-11-17 12:12:20 +01:00
44bd85a041
not working for python3, trying
2018-11-17 12:12:20 +01:00
e1a730e96b
python3 compatible integer division and argument sequence in agreement with documentation
2018-11-17 09:58:54 +01:00
015e819d4c
python3 does not allow to compare tuple/list with int
2018-11-17 09:29:05 +01:00
82861e80bc
more python3 related changes
2018-11-17 08:46:58 +01:00
558745b548
explicitly require python3
...
on older systems, python3 tpyically exists but python2 is the defaul
2018-11-17 08:12:12 +01:00
50f880afd1
more scripts working with python3
2018-11-16 19:32:17 +01:00
4ffb4a4321
fixed several typos
2018-11-16 19:28:24 +01:00
9922f5f646
adjusted to python3
...
translate is more complicated now:
https://stackoverflow.com/questions/41708770
2018-11-16 12:23:45 +01:00
26811b74d6
known to work with python3
2018-11-16 09:18:29 +01:00
a3647cc587
more files with confirmed python3 compatibility
2018-11-16 09:03:12 +01:00
f47891e292
booleans not allowed as indeces any more
2018-11-16 09:03:12 +01:00
e9e3fef8d4
more python3 compatible scripts
2018-11-15 16:40:54 +01:00
fe2c7efa27
seem to work
2018-11-15 13:56:48 +01:00
8f80152a03
use floor division of integers
...
1/2 = 0.5 in python3 (would be 0 in python2)
2018-11-15 12:28:36 +01:00
efd29e62f7
verbose should be optional
...
- causes problems on many systems (screwed up output)
- does not work with python 3 since threading class has changed
2018-11-15 12:16:55 +01:00
0cbcb028aa
fixed problem with "ValueError: Mixing iteration and read methods would lose data" for string-containing tables
2018-10-21 15:39:30 -04:00
7480d1a842
fixes for Python3
2018-10-19 07:35:59 +02:00
a00d15b889
geom files are not labeled
2018-09-29 11:18:35 +02:00
8616a92309
unused module
2018-07-20 03:50:07 +02:00
24d1528e04
on the way to full python 3 compatibility
2018-07-20 03:31:46 +02:00
2632be2a76
polishing
2018-07-20 03:09:53 +02:00
784ae28dbb
now working with python 3
2018-07-20 00:39:50 +02:00
1f637a0c49
python3 compatible map requires conversion to list
2018-07-19 18:01:38 +02:00
0438b7113a
using util function where possible, ensuring python3 compatibility
2018-07-19 16:38:25 +02:00
f928bd5e5b
more python 3 compatibility
2018-07-19 16:26:30 +02:00
35e470ff4d
needed for python3
2018-07-19 16:19:05 +02:00
9821654aae
iteritems does not exist in python3 anymore
...
items also works for python2 (might be slower though)
2018-07-19 16:16:10 +02:00
d138993c1d
using util functionality to be compatible with python3
2018-07-19 16:12:36 +02:00
aadcd61824
polishing
2018-06-18 00:05:55 +02:00
1b12457fe6
vicinityOffset to specific triggering IDs instead of just any other ID
2018-03-30 11:48:02 -04:00
0570a49ed5
fixed broken logic of restoring and preventing immutable microstructures
2018-03-27 16:53:49 -04:00
2c3eae6bf0
fixed tests and bug for very small unit cube fractions when grid is also small
2018-03-07 18:59:27 -05:00
32c34457c2
direct selection of valid seed coordinates within subfraction of unit cube instead of check and repeat
2018-03-07 17:45:22 -05:00
1bbaa7cefe
reverted last commit, scipy.linalg is different from numpy.linalg
2018-02-26 23:50:44 +01:00
6046a7ae3d
there is no scipy.linalg (at least on my system)
...
numpy.linalg is automatically imported together with numpy
2018-02-26 20:22:57 +01:00
b078234644
added scipy and scipy.linalg as known modules for calculations
2018-02-25 14:19:22 -05:00
f5177b6d2d
[skip ci] added option for non-periodic geometries
2018-02-20 10:20:35 -05:00
2254746177
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development
2018-02-12 11:23:05 +01:00
9249e7db2b
Merge branch 'development' into HMS
2018-02-07 11:44:17 +01:00
ba3a4e1254
indicating vectors with 1_, ..., n_ is standard now, "euler" also (more or less)
2018-02-05 17:34:08 +01:00
e304ce35da
forgot to rename function call to read "coordGridAndSize"
2018-01-30 12:58:43 -05:00
355d576b4d
shortened code with utility function coordGridAndSize
2018-01-30 09:20:47 -05:00
710970d728
updated option --label for addCurl/Div/Grad
2018-01-29 21:27:05 -05:00
1d71a52133
further simplifcation of scripts
2018-01-29 15:10:41 -05:00
b45b43c5ac
bug fix in addCurl, simplified scripts
2018-01-29 14:12:19 -05:00
622d038932
einsum now compatible with numpy 1.14
2018-01-29 09:18:05 -05:00
30272fc355
generalized addCurl with --data instead of --tensor and --vector
2018-01-28 18:25:50 -05:00
8fb127f31c
better description of activity
2018-01-28 18:08:02 -05:00
761670f218
generalized addGradient with --data instead of --scalar and --vector
2018-01-28 18:02:35 -05:00
532d669d33
switched to more robust line based output
2018-01-27 17:45:53 -05:00
ceb0ff09e6
Subdivide vertex data with geometry when converting Marc input to VTK
2018-01-15 17:20:24 -05:00
a03bb1ec3e
Add MSC.Marc to VTK conversion support
...
marc_to_vtk.py takes Marc input file, subdivides it and creates a
vtkUnstructuredGrid .vtu file with the resulting geometry. Currently
supports hexahedron elements.
vtk_addGridData.py adds nodal/cell data to some VTK grid. It is
essentially vtk_addRectilinearGridData with support for unstructured
grid (.vtu) format, which is marc_to_vtk.py's output.
2017-12-11 12:32:38 -05:00
c33655b479
fixed pyflakes issues
2017-11-28 11:14:22 -05:00
0c8c4b54aa
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development
2017-11-28 11:12:05 -05:00
3b96fac8bd
added script to calculate numerical derivative of ASCIItable data
2017-11-28 10:59:53 -05:00
4dfb52c792
unfinished HDF5 should not be part of the next release
2017-11-21 10:23:50 +01:00
b4f4527ad1
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development
2017-11-05 08:31:59 +01:00
2b69cb8ea9
removed unnecessary liens
2017-10-24 13:23:44 +02:00
d77789b89f
minor change
2017-10-24 12:01:10 +02:00
d599aec37f
Merge branch 'development' into HMS
2017-10-24 11:24:54 +02:00
82758bd90f
added yield criterion of facet potential
2017-10-24 11:15:34 +02:00
eddc2a6acf
numpy actually not needed
2017-10-20 10:17:08 +02:00
0c24f113c1
split overlong line
2017-10-20 10:14:15 +02:00
26b8788c06
script to colocate 2D ang files into one §D file and optionally creat geometry and Paraview files
2017-10-20 09:36:57 +02:00
eda8c24b7d
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development
2017-10-07 17:24:59 +02:00
14c1291046
added "--quiet" option to suppress online messaging
2017-10-03 14:03:50 -04:00
f46d721750
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development
2017-09-03 17:42:02 -07:00
64259d9239
bug fixed in whitelist sorting, more robust against numpy parsing errors
2017-08-28 19:38:14 -04:00
5b8bc65d37
exchanged string 'n/a' for 'nan' to allow smooth parsing as float value
2017-08-28 19:32:59 -04:00
9e5896a6c5
large speedup (10x) for unconditional filtering by using read/writeArray
2017-08-23 20:54:02 -04:00
fc4fb43d48
aborting when NO data columns found
2017-08-23 17:53:30 -04:00
ff072ae3c4
fixed bug (lost orgin info)
2017-08-23 15:14:22 -04:00
e82df723d1
added Rodrigues vector as possible input format
2017-08-23 14:10:56 -04:00
b3ac200c17
report linking column in screen output
2017-08-23 14:10:22 -04:00
9b6e092b5c
changed location where script appends itself to info trail
...
used to be sometimes at top, sometimes at bottom; now always after predecessor and above standard geom header
2017-08-23 14:09:33 -04:00
f825e91bf1
script to straighten numbering in geom
2017-08-23 14:08:11 -04:00
12fed7a38f
added option to use seed coordinates that are not normalized to a unit cube
2017-08-16 16:24:45 -04:00
255a465e8b
sharpened error detection and reporting
2017-08-16 15:18:29 -04:00
e18c2fd74c
slight layout tweak
2017-08-16 12:52:46 -04:00
91c70fc823
sharpened error detection and reporting
2017-08-16 12:51:32 -04:00
a2947789b5
clarified help and reporting
2017-08-15 16:12:06 -04:00
4eff7cfdd8
fixed wrong name for "pos" options destination
2017-08-15 16:11:21 -04:00
95c0179945
labeling vectors and values independenty in addSpectralDecomposition
2017-08-13 02:14:34 +02:00
e6cc948ddf
added vector-valued conditions and cleaned obsolete code
2017-08-11 15:19:47 -04:00
b7d4b3d190
simplified internal handling of conditions and added vector capability to it
2017-08-11 11:56:27 -04:00
3860eecb7c
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development
2017-08-10 11:09:37 -04:00
9bbc0d4803
implemented fast yield surface fitting with yield stop criteria
2017-08-08 17:29:14 +02:00
36c370e668
implemented fast yield surface fitting with yield stop criteria
2017-08-08 17:25:38 +02:00
1a423617c2
combined assignement of curvature exponent to deal with negative dimensions
2017-08-03 12:12:47 -04:00
84a3885af8
negated option from "voxelspace" to "realspace".
...
introduced logarithmic sense of curvature exponents, additional polishing
2017-08-03 12:08:51 -04:00
cb62066667
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development
2017-07-31 23:00:24 +02:00
68493a00f5
fixed PEP line continuation warning
2017-07-31 10:04:04 -04:00
c8222d6f82
Merge remote-tracking branch 'origin/development' into development
2017-07-31 09:51:10 -04:00
837b14592a
addLinked can now link between vector-valued columns
2017-07-31 09:34:30 -04:00
269eacb11d
added flag for skipping right-handedness check of eigenvector basis
...
separate names for min,mid,max eigvals and vecs
2017-07-28 13:44:17 -04:00
6547ab8c69
not needed, ASCII table ensures shape (Npoints,Nvalues)
2017-07-05 04:43:20 +02:00
f085f61c4d
testing hook that checks for executable bit
2017-06-02 09:25:58 +02:00
6599f7299d
correct description
2017-06-01 10:00:29 +02:00
e5af0630fe
gaussian filter (wrapper no ndimage)
2017-05-29 10:33:05 +02:00
691f338f5d
executable bit got lost
2017-05-19 09:33:58 +02:00
ed85ce5bdb
changed argument handling in line with other scripts
...
now also works with stdin/out
2017-04-28 12:36:10 +02:00
d35df1df49
Operate on MFD file to apply servo links, not client-server communication
...
Speed up by many orders of magnitude... 64 x 64 x 64 mesh less than a minute! Thanks Brendan!
2017-04-26 17:32:01 -04:00
c34716a0da
modern form of croaking, added '*draw_automatic' as final output
2017-04-14 15:07:43 -04:00
d1c2e2114d
switch auto drawing back on at end of pipeline
2017-04-13 19:00:19 -04:00
95a982e002
default type for muliple arguments (not extend) is tuple, not list
2017-04-13 12:54:26 +02:00
88809863ba
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development
2017-03-20 15:14:15 -04:00
66b4e24ab7
solver.Marc.version has no argument anymore
2017-03-20 15:13:54 -04:00
0d648b8de0
Change script to use resolution-independent coords
...
- Use the --voxelspace flag to get the old behavior
2017-03-07 20:37:30 -05:00
de57d9514e
removed code doubling and unused variables
2017-03-05 17:50:17 +01:00
f010aa97d9
Fix non-cube geometry structure, reduce memory
2017-02-24 22:30:04 -05:00
e5e6bed5de
Improve performance and generalize primitive shape
...
- Behavior is mostly unchanged, but the primitive may be shifted by a voxel when compared to the previous version, which had rounding issues near the edge of the primitive.
- exponent flag specifies the exponents that satisfy the equation x^e1 + y^e2 + z^e3 < 1. (1,1,1) gives an octahedron, (2,2,2) a sphere, and large values (1e10, 1e10, 1e10) gives a hexahedral box for any reasonable resolution. Mixing the two can produce a cylinder, (1e10, 2, 2) gives one with rotational symmetry about the x-axis.
2017-02-24 00:42:28 -05:00
a9d72c54b6
was not python3 conforming
2017-02-04 01:07:24 +01:00
746cb9c306
nicer code layout
2017-01-19 15:10:38 +01:00
c80b02dd72
avoid reporting "none" as STDIN filename
2017-01-19 15:10:17 +01:00
49eb7aa1be
fixed nasty ABS that caused wrong packing for 1,2,1,1,1,... and the like
2016-12-25 12:39:49 -05:00
3628deb30e
changed option name from "no-config" to more common "without-config"
2016-12-23 17:46:16 -05:00
d67be0e3f3
reduced memory footprint (substantially) by switching to 32bit precision
2016-12-08 23:36:19 -05:00
c8f321356d
prefill immutable indices with closest mutable one
...
Retain only orginially immutable locations, not those where immutability bled into.
Changed threshold for change from 0.5 to 0.95 of max diffusedEnergy.
2016-12-08 09:47:20 -05:00
9bb4f89e78
removed leftover debug output
2016-12-06 21:36:45 -05:00
a2db7e9ba1
added option to suppress writing of material.config part in header
2016-12-06 21:36:25 -05:00
cb95f3b244
fixed systematic drift of grain structure along -[1,1,1]
...
correction of periodic Gauss kernel extension, inclusion of ndimage.gaussian_filter alternative (same runtime as FFT), proper output handling of grids <3D
2016-11-30 09:39:13 -05:00
40de6910b8
added --float option to translate real-valued grid data
2016-11-29 23:59:42 -05:00
814b05e2f6
renamed to hopefully clearer express functionality
2016-11-29 16:30:24 -05:00
0f04ddd88e
polishing of whitespace, usage help, etc.
2016-11-29 14:44:34 -05:00
43c1880195
fixed periodic averaging to work with multi-dimensional data
...
option --periodic now takes list of labels that undergo periodoc domain averaging, i.e. incompatible to former API!
2016-11-29 14:44:06 -05:00
231f05e142
corrected bug that added index column values as first output
2016-11-29 11:16:50 -05:00
c9ec2e0f46
New table mapping based on shared column values
...
renamed old addMapped to addRowMapped to better reflect true functionality.
2016-11-29 09:33:35 -05:00
873c52cceb
using 3 way merge to have syntax as similar as possible
2016-11-07 19:51:12 +01:00
6d91ce866e
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development
2016-11-07 09:10:39 +01:00
551b4369a1
improved readability
2016-11-07 09:06:35 +01:00
8179a703fb
now more flexible, works for synthetic data and user selected data
2016-11-06 23:07:12 +01:00
d35c9dd431
using Einstein sum to replace 'for loop'
2016-11-04 18:50:39 +01:00
a04968d43f
Merge branch 'development' into negativeRange
2016-11-01 17:20:56 +01:00
9e76b51014
fixing global variables handling (need to be defined before being used)
2016-10-31 22:53:14 +01:00
8593fb3ed7
unifying scripts
2016-10-31 22:11:16 +01:00
Martin Diehl