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DAMASK_EICMD
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improved error handling/clearer messages

This commit is contained in:
Martin Diehl 2019-03-05 10:58:57 +01:00
parent 5b28e80d21
commit b84d4f1b6a
2 changed files with 12 additions and 13 deletions
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2
PRIVATE

@ -1 +1 @@
Subproject commit def4081e837539dba7c4760abbb340553be66d3c
Subproject commit 35bfe75dfc93e8b708b2e0349ce2fb89ceae1ad4

23
processing/pre/geom_fromDREAM3D.py
View File

@ -22,13 +22,13 @@ from grain data (individual grains are segmented). Requires orientation data as
parser.add_option('-b','--basegroup',
dest = 'basegroup', metavar = 'string',
help = 'name of the group in "DataContainers" that contains all the data')
help = 'name of the group in "DataContainers" containing the pointwise (and, if applicable grain average) data')
parser.add_option('-p','--pointwise',
dest = 'pointwise', metavar = 'string',
help = 'name of the group in "DataContainers/<basegroup>" that contains pointwise data [%default]')
help = 'name of the group in "DataContainers/<basegroup>" containing pointwise data [%default]')
parser.add_option('-a','--average',
dest = 'average', metavar = 'string',
help = 'name of the group in "DataContainers</basegroup>" that contains grain average data. '\
help = 'name of the group in "DataContainers</basegroup>" containing grain average data. '\
+ 'Leave empty for pointwise data')
parser.add_option('--phase',
dest = 'phase',
@ -88,20 +88,19 @@ for name in filenames:
if options.average is None:
label = 'point'
N_microstructure = np.product(info['grid'])
dataset = os.path.join(group_pointwise,options.quaternion)
try:
quats = np.reshape(inFile[dataset][...],(N_microstructure,3))
quats = np.reshape(inFile[dataset][...],(N_microstructure,4))
texture = [damask.Rotation.fromQuaternion(q,True,P=+1) for q in quats]
except:
errors.append('Pointwise orientation data ({}) not found'.format(dataset))
errors.append('Pointwise orientation (quaternion) data ({}) not readable'.format(dataset))
texture = [damask.Rotation.fromQuaternion(q,True,P=+1) for q in quats]
dataset = os.path.join(group_pointwise,options.phase)
try:
phase = np.reshape(inFile[dataset][...],(N_microstructure))
except:
errors.append('Pointwise phase data ({}) not found'.format(dataset))
errors.append('Pointwise phase data ({}) not readable'.format(dataset))
else:
@ -112,7 +111,7 @@ for name in filenames:
microstructure = np.reshape(inFile[dataset][...],(np.product(info['grid'])))
N_microstructure = np.max(microstructure)
except:
errors.append('Link between pointwise and grain average data ({}) not found'.format(dataset))
errors.append('Link between pointwise and grain average data ({}) not readable'.format(dataset))
group_average = os.path.join(rootDir,options.basegroup,options.average)
@ -120,13 +119,13 @@ for name in filenames:
try:
texture = [damask.Rotation.fromQuaternion(q,True,P=+1) for q in inFile[dataset][...][1:]] # skip first entry (unindexed)
except:
errors.append('Average orientation data ({}) not found'.format(dataset))
errors.append('Average orientation data ({}) not readable'.format(dataset))
dataset = os.path.join(group_average,options.phase)
try:
phase = [i[0] for i in inFile[dataset][...]][1:] # skip first entry (unindexed)
except:
errors.append('Average phase data ({}) not found'.format(dataset))
errors.append('Average phase data ({}) not readable'.format(dataset))
if errors != []:
damask.util.croak(errors)