26c242b997
not needed anymore
...
conceptually, having the quaternion class is nice but performance-wise
it is a nightmare and prevents vectorization
2020-01-14 09:03:50 +01:00
99684c3e86
Merge branch 'vectorized-orientation-conversion' into no-python-quaternion
2020-01-14 09:02:43 +01:00
3fc616bc7d
Merge branch 'development' into vectorized-orientation-conversion
2020-01-14 09:00:10 +01:00
af42eae9c1
Merge branch 'development' into python-module
2020-01-14 08:58:19 +01:00
c7e92c672d
avoid code duplication
2020-01-14 07:30:17 +01:00
ecb8510217
leaner (and hopefully faster) code
2020-01-14 05:32:42 +01:00
86f27df0b2
damask.Environment reads from os.environ; python module is packaging-ready
2020-01-13 17:28:28 -05:00
f7d0b75f06
Merge branch 'development' into marc-improvements
2020-01-13 22:06:52 +01:00
edbee3a419
Merge branch 'development' into python-module
2020-01-13 15:24:08 -05:00
7b3015c6bd
relaxed tolerances.
...
one out of multiple thousand tests failed ...
2020-01-13 18:44:50 +01:00
47bcdfc22c
[skip sc] vtk output working and tested
...
need to check syntax check because ifort 17.0 has problems with new
mesh. Works, however, with Intel 17.8
2020-01-13 11:53:37 +01:00
76d0383c2f
Merge branch 'MoreImprovements' into marc-improvements
2020-01-13 10:04:27 +01:00
bd4db68a12
support for non QUAD cell type
2020-01-13 10:03:13 +01:00
f9772a3df8
more descriptive name
2020-01-13 02:51:49 +01:00
26442ee783
bugfixes
...
missing import/outdated test
2020-01-12 19:35:45 +01:00
70b73762ed
avoid warning due to change in default parameter
2020-01-12 19:21:16 +01:00
19e88df571
polishing
2020-01-12 07:53:41 +01:00
1315029196
do not clutter comments
2020-01-12 02:06:53 +01:00
1bb94f03b8
polishing (prospector was complaining)
2020-01-12 00:21:14 +01:00
97ddd56540
avoid strange deformation gradients
...
otherwise, the test fails in a few cases (determinants were in the range
1e-5 to 1e16)
2020-01-11 23:44:11 +01:00
3938f34978
Merge branch 'MiscImprovements' into MoreImprovements
2020-01-11 22:37:41 +01:00
2d9c25f8e5
Merge branch 'development' into MiscImprovements
2020-01-11 20:34:35 +01:00
300f1b7015
added options to return "natural" versions of asQ, asRodrig, and asAxisAngle
2020-01-11 11:36:22 -05:00
09f42a3991
ang files might have more columns
2020-01-08 15:34:21 +01:00
385085de73
correct names for numpy (differ from math)
2020-01-04 01:05:40 +01:00
e692118ec5
easier to use for single output label
2020-01-03 15:41:15 +01:00
b5e4e42505
splitext includes leading dot
2020-01-03 14:44:31 +01:00
49f3de44b9
limit import statements (numpy already in use)
2020-01-02 18:02:13 +01:00
97e7f510e2
wrong time was reported in case of trailing inactive increments
2020-01-02 16:27:42 +01:00
f5c58517a7
enable one grid point along all directions
2019-12-24 15:59:09 +01:00
aec9c601d6
some insights from continuum mechanics formulated as test
2019-12-23 15:34:13 +01:00
60580cc45a
mixed up left/right stretch tensor
2019-12-23 07:16:50 +01:00
2cb3213e37
improvements to Table class
...
- string comparison should be '!=' not 'is not', latter compares
object, not value
- functions for common operations: append (vstack, growTable) and join
(hstack, addTable)
2019-12-22 22:21:32 +01:00
48c21045d7
centralized functionality for ang import
2019-12-22 14:57:57 +01:00
e08b096f08
just to make sure ...
2019-12-21 23:43:56 +01:00
a7d60dc52a
not used anymore
...
geom class has own report function
2019-12-21 19:10:41 +01:00
5b7139dc22
using specialized class
2019-12-21 19:09:28 +01:00
6989679d3b
using central functionality
...
- Table class for table data
- grid_filters for grid related functions
2019-12-21 19:03:36 +01:00
2cd2d6f506
cell_2_node/node_2_cell work only for periodic data
...
hence, coordinates and displacements cannot be converted easily
2019-12-21 18:07:04 +01:00
3bf9a4deb5
Merge branch 'grid-filters' into MiscImprovements
2019-12-21 17:39:39 +01:00
503626473a
bugfix: wrong grid order
...
for x fast, z slow, the shape of the array needs to be reversed
2019-12-21 17:38:16 +01:00
0d1ff72c45
Merge branch 'grid-filters' into MiscImprovements
2019-12-21 06:57:38 +01:00
f0d3b29b82
Merge branch 'development' into MiscImprovements
2019-12-21 06:53:56 +01:00
2c5f7d3b5a
Merge branch 'development' into grid-filters
2019-12-20 14:32:20 +01:00
034367fa6a
Merge remote-tracking branch 'remotes/origin/noPostResults' into development
2019-12-20 11:40:57 +01:00
2fe163be31
Merge branch 'development' into MiscImprovements
2019-12-18 19:57:00 +01:00
80b559dc00
Merge branch 'no_phase_name_for_genericoutput' into 'development'
...
No phase name for genericoutput
See merge request damask/DAMASK!113
2019-12-18 18:54:46 +01:00
3c42368f66
also use newer regex
2019-12-18 11:29:13 +01:00
6a8783bab8
these functions are static
...
class methods change are allowed to change the attributes of the class.
This is not what we do here
2019-12-13 15:46:40 +01:00
5b376712ef
bugfix: wrong coordinates
2019-12-13 14:39:10 +01:00
e5448fc381
avoid code duplication
2019-12-13 14:36:52 +01:00
7d849b639b
Point based vtk file in DADF5 class
2019-12-13 14:20:18 +01:00
57a69ad4c9
Reupload PDF pole figures.
2019-12-13 13:32:16 +01:00
0c30f6b1df
Polishing Mtex script for plotting pole figures.
2019-12-13 12:52:33 +01:00
b14c15fd9e
directly output DADF5 to vtk from python
2019-12-13 12:15:45 +01:00
63fc125398
include origin do DADF5
...
requires updat of file version
2019-12-13 09:12:07 +01:00
cc6f771368
[skip ci] strip whitespace from VERSION
2019-12-12 18:10:22 -05:00
582f895d18
restored Solver module functionality
2019-12-12 16:58:37 -05:00
e37daadaff
restored environment functionality
2019-12-12 14:57:07 -05:00
41ed7ce462
"pip install damask" either locally or from PyPI after upload
2019-12-12 14:32:51 -05:00
1d7010778e
[skip ci] silence annoying warnings
2019-12-11 19:43:23 +01:00
fcbe4ee5a2
[skip ci] polishing
2019-12-11 18:08:51 +01:00
bd12ef83b9
parametrizing
2019-12-11 18:01:24 +01:00
37e52fd81f
polishing
2019-12-11 16:51:13 +01:00
562d216fa9
bcc is passive rotation and fcc is active rotation
2019-12-11 09:23:12 +01:00
0b04843c91
pandas is needed for Table class
2019-12-11 08:11:00 +01:00
e142d00d02
test now sensible to wrong rename
2019-12-10 20:05:24 +01:00
4c1281b4fc
rename changed order in shapes dict.
...
This resulted in wrong column names when writing to ASCII file
two fixes (one would be enough):
1) keep order (build new directory)
2) write in order of labels in pandas dataframe, not in order in shapes
dict
2019-12-10 20:04:03 +01:00
ca06c1d3a2
Fix bugs in relatedOperations for NW,GT and GTprime.
2019-12-10 13:49:33 +01:00
d1fa2a14dc
was used only for yield surface fitting
2019-12-09 05:28:00 +01:00
5a9173ccf4
might simplify plotting in MTEX
2019-12-08 21:57:07 +01:00
fa9ee6b116
using reference results for orientation relationships
2019-12-08 21:48:32 +01:00
53cb59fc47
use pytest instead of hand-written test class
2019-12-08 21:29:26 +01:00
6dfe24290c
Merge remote-tracking branch 'origin/development' into fix-orientation-relationship-2
2019-12-08 21:10:50 +01:00
b56864552f
testing forward <-> backward conversion
2019-12-08 21:05:34 +01:00
21431295fb
documenting
2019-12-08 20:20:13 +01:00
4e2e7d02f6
more sensible interface
2019-12-08 18:54:41 +01:00
7dc128ad12
polishing
2019-12-08 18:33:43 +01:00
828e82605e
ensure that data is correctly ordered
2019-12-08 18:13:45 +01:00
8d0c4310cf
improvements to grid generation
...
- handling of origin
- inverse functions: calculate grid,size,origin from regular coordinates
(cell or node). should replace corresponding functionality in util
2019-12-08 18:12:22 +01:00
9dc726ff53
polishing
2019-12-08 09:17:57 +01:00
ba69f5a631
polishing
2019-12-07 22:33:31 +01:00
96710a238d
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into incs-no-leading-zero
2019-12-06 15:25:21 +01:00
4ddfd82304
better names
2019-12-05 18:32:21 +01:00
b1ff178109
Merge branch 'new-ASCII' into grid-filters
2019-12-05 18:06:56 +01:00
2648a67dcd
fixed sort_by to respect updated index (upon subsequent adding of new data)
2019-12-05 12:02:10 -05:00
3caf2c1296
condensing code
2019-12-05 09:05:50 -05:00
e7358746dc
taking care of prospector complaints
...
variables in 'eval' are hidden
2019-12-05 10:54:35 +01:00
274aaa7359
Merge branch 'new-ASCII' into grid-filters
2019-12-05 10:50:56 +01:00
1018b89296
nice to have..
2019-12-05 10:48:42 +01:00
f885748a58
variable was never used
2019-12-05 08:43:14 +01:00
1bf4946e67
invalid escape sequence
2019-12-05 08:37:39 +01:00
469d638afb
making table class feature complete
2019-12-05 06:57:09 +01:00
ee8e3386f4
shorter but still descriptive names
2019-12-05 06:16:29 +01:00
e7a67262f8
clear enough
2019-12-05 06:00:49 +01:00
2172e92e7e
test exotic input files
2019-12-05 05:57:47 +01:00
5fdf112f78
allow strings as data in ASCII file
2019-12-05 05:45:27 +01:00
1c83572589
more descriptive names
2019-12-05 05:11:58 +01:00
381c95bd1e
WIP: regrid functionality
2019-12-04 10:41:02 +01:00
07e9778798
one more test
2019-12-04 10:20:57 +01:00
bc41bbbec5
test coordinates-related functions
2019-12-04 09:23:08 +01:00
999321e588
Merge branch 'new-ASCII' into grid-filters
2019-12-04 07:45:01 +01:00
285075bb6b
ordered alphabetically
2019-12-04 06:15:32 +01:00
6902d3dd0a
repeated test
...
better sort alphabetically
2019-12-04 06:04:06 +01:00
6c31e22855
testing new style DADF5 file
2019-12-04 05:59:52 +01:00
32ebcea207
more tests
2019-12-04 05:49:43 +01:00
fecd4632b4
correct reporting of time
2019-12-04 05:49:17 +01:00
58a190ede8
Merge branch 'development' into incs-no-leading-zero
2019-12-04 05:19:38 +01:00
1110affec2
Merge branch 'new-ASCII' of magit1.mpie.de:/damask/DAMASK into new-ASCII
2019-12-04 05:10:01 +01:00
9ad8743396
using central functionality
2019-12-03 22:00:21 +01:00
e006e0ebec
functions for spatial coordinates on regular grids
2019-12-03 18:59:59 +01:00
3effea8e1d
also check operations that should NOT work
2019-12-03 17:03:03 +01:00
f5bbd3cf22
ensure functionality through unit testing
2019-12-03 16:39:54 +01:00
ff1778d149
Merge branch 'development' into new-ASCII
2019-12-03 15:56:49 +01:00
8f77843b0f
improved naming
...
- clearer variable names
- no '-' in attributes
- single source of truth
2019-11-30 09:01:37 +01:00
354c0123a1
backward compatibility
2019-11-30 08:40:59 +01:00
4185fcb4c3
adjust to new naming
2019-11-29 21:40:54 +01:00
dc3fc8f70c
do not clutter with leading zeros
2019-11-29 17:00:48 +01:00
76a1506893
small improvements
...
bugfix: writing correct labels (now consistent with readin)
error handling for inconsistent initialization
2019-11-28 20:18:54 +01:00
f2e722ed2e
polishing
2019-11-28 18:22:34 +01:00
3e65d44e07
centralized facilities for differential operations
...
note the need to reverse the grid shape in data from the ASCII table. If x is fastest,
z is slowest we require x to be the rightmost index
2019-11-28 15:46:22 +01:00
80b50f460e
cleaning
...
trying to get rid of strange re-ordering related to ASCII table data
layout
2019-11-28 10:09:22 +01:00
ca92400c2f
polishing
...
columns is the term used py pandas
2019-11-28 05:58:28 +01:00
b85049cb81
use brackets for line continuation with comments
2019-11-28 05:41:53 +01:00
98d5738fe6
Merge branch 'new-ASCII' into grid-filters
2019-11-28 05:12:36 +01:00
80002e6cfd
proper capitalization
2019-11-27 13:21:41 +01:00
cee095b58e
better use centralized code
2019-11-27 12:22:28 +01:00
7d4b982c73
make information on modifications mandatory
2019-11-27 12:08:23 +01:00
76c3577378
pandas.DataFrame needs to be a 2nd order array
2019-11-27 12:03:35 +01:00
39734ef53c
alter data
...
allows to access multiple columns ('f') and individual components
('1_f')
2019-11-27 10:56:29 +01:00
96714089b1
documented and tested handling of multi-dimensional data
...
more precise regex expressions. get_array can handle individual
components
2019-11-27 09:58:58 +01:00
882a11c5f8
get labels without shape information
2019-11-27 08:43:20 +01:00
2d96136a0d
more general constructor for Table
...
reading from file is just one case (now handled by static method).
General constructor needs data and header information as dictionary.
Works only with python 3.7 where dict keeps the insertion order. Earlier
python versions/other implementations might fail.
2019-11-26 22:53:46 +01:00
5661f60552
fname seems to be the common name
2019-11-26 21:36:24 +01:00
925a4f73d6
staticmethod better suited than class method
...
a classmethod changes the class, i.e. it assigns attributes and gives
them specific values.
a staticmethod does not alter the class
https://www.geeksforgeeks.org/class-method-vs-static-method-python
2019-11-26 20:32:54 +01:00
845cfc34ec
similar logic as in geom class
...
- filename is not part of the object
- transparent handling of files, strings, and path-like objects for file
IO
2019-11-26 14:26:25 +01:00
81abc43920
Merge branch 'development' into new-ASCII
2019-11-26 10:29:05 +01:00
23f5e0fa58
filters for operations on regular grids (in fourier space)
2019-11-26 10:25:39 +01:00
af78aaf2f1
testing rescale
2019-11-25 14:01:40 +01:00
e16024ddf9
Merge branch 'PythonImprovements' into pytest
2019-11-25 14:00:24 +01:00
476569390a
enable use of path objects, strings, and opened files
2019-11-25 13:47:14 +01:00
b757f02649
avoid repetitions
2019-11-25 12:04:57 +01:00
6d25506204
test for new pack functionality
2019-11-25 09:28:59 +01:00
969fa9bbc7
Merge branch 'PythonImprovements' into pytest
2019-11-25 09:15:06 +01:00
3e8518d861
following prospector guidelines
2019-11-24 19:30:00 +01:00
c9f9f7c681
pack causes trouble with tests ..
2019-11-24 19:02:19 +01:00
b2cdabd009
getting rid of shell scripts
2019-11-24 18:25:53 +01:00
816e86ae5f
phasing out python shell scripts
2019-11-24 15:13:26 +01:00
8186be6293
compress functionality should be part of the geom class
...
automated decision is base on heuristic whether compression is memory
efficient
2019-11-24 14:27:24 +01:00
02df55b9bd
bugfix
...
casting to plain array works only (and makes sense only) for a derived
type
2019-11-24 11:18:41 +01:00
6060abb375
cleaning
2019-11-24 09:10:47 +01:00
c9b1944493
handling of derived datatypes/structs
...
currently required for orientation
2019-11-24 08:50:27 +01:00
f30cbde99e
use first constituent as default
2019-11-24 08:04:40 +01:00
928a5c2e55
better use fixtures
2019-11-24 06:29:00 +01:00
2b392241f9
Merge branch 'PythonImprovements' into pytest
2019-11-23 19:25:22 +01:00
406ae29897
adopting rename in mechanics
2019-11-23 19:22:18 +01:00
3be1caa4ef
read_dataset has at least two dimensions
2019-11-23 19:21:41 +01:00
eb80a82e05
first idea how to test pointwise operations
2019-11-23 18:58:44 +01:00
e3f8195621
no not change line endings
2019-11-23 17:08:36 +01:00
4dc4442fae
small DADF5 file for testing
2019-11-23 16:15:08 +01:00
510e4752fd
using parametrized tests for better coverage
2019-11-23 14:03:47 +01:00
2810531c97
a test with reference results
2019-11-23 13:37:03 +01:00
834cd43b66
intention not clear
...
any ideas why __transforms__ was used?
2019-11-23 08:06:26 +01:00
ea4c4b6636
Merge branch 'PythonImprovements' into pytest
2019-11-22 22:10:20 +01:00
dfb95df689
migrating shell scripts to python class
2019-11-22 21:48:41 +01:00
c00af5c402
4 space indents are common practice
2019-11-22 20:52:36 +01:00
e5e3db8286
Merge branch 'PythonImprovements' into pytest
2019-11-22 15:42:27 +01:00
fad679a9a5
need to catch IOError
2019-11-22 15:19:20 +01:00
6e0b2a4fab
following prospector rules
2019-11-22 13:16:53 +01:00
dac63f7d92
subfolders not needed
2019-11-22 12:55:56 +01:00
77e410d7d1
follow prospector rules
2019-11-22 12:17:44 +01:00
a26a5738dd
polishing
2019-11-21 21:48:54 +01:00
e0f3fe3cc0
ported from hand written test class
2019-11-21 21:01:01 +01:00
a3376a35b7
testing mechanics module with pytest
2019-11-21 20:00:28 +01:00
cf88c1f907
correct syntax for integer comparison
2019-11-21 19:49:46 +01:00
a5ae82fe90
handle deprecation warning in python 3.8
2019-11-21 19:47:27 +01:00
7a7eea47b5
correct handling of arrays
...
all strains measures except for logarithmic had wrong off-diagonal
components
2019-11-21 19:46:05 +01:00
fb286af354
[skip sc] first draft
2019-10-31 10:47:40 +01:00
1c10459a5a
also use fast operation order
2019-10-30 21:09:17 +01:00
8a85123abc
4 space indent is python standard
2019-10-30 18:05:44 +01:00
b733bd3038
polar decomposition
2019-10-28 11:18:26 +01:00
fca288ae8a
performance improvement
...
this mapping is faster for large volumes
2019-10-25 14:47:36 +02:00
894b646283
corrected name of U,V; fixed Mises_strain factor from 3/2 to 2/3;
2019-10-23 15:03:24 +02:00
2d08eb68b1
bugfix for (3x3) version of Cauchy
2019-10-23 14:39:52 +02:00
5e7f9a223b
should be a passive rotation
2019-10-21 23:17:58 +02:00
9489c04ccb
less confusing
2019-10-21 23:02:31 +02:00
ecc51e34d3
rouding should affect color calculation
...
avoid NaN in math.power(x,0.5). math.power(-0.0,0.5) is ok
2019-10-21 22:44:12 +02:00
578cbf9bbf
bugfixes:
...
- vonMises calculation was wrong
- wrong type of data used in some add_XXX
2019-10-21 18:07:35 +02:00
78a2941436
avoid numerical issues
2019-10-21 16:59:49 +02:00
51ed4d68e6
more info
2019-10-20 13:13:48 +02:00
b593dfbfd9
better layout
2019-10-20 11:34:05 +02:00
f00f6952c0
selecting by increment is a common task
...
https://www.python.org/dev/peps/pep-0257/
The docstring is a phrase ending in a period. It prescribes the function or method's effect as
a command ("Do this", "Return that"), not as a description; e.g. don't write "Returns the pathname ...".
2019-10-20 11:00:10 +02:00
8f315836b0
easier to use if end time is included:
2019-10-20 10:42:45 +02:00
64731369e3
general definition for strain tensors
2019-10-19 16:05:53 +02:00
a665d5726d
polishing
2019-10-19 13:22:37 +02:00
b31de5d0f6
outsourcing tensor math to mechanics class
...
strain calculation is generalize to arbitrary order and simplified: No
need for svd, F^T F/F F^T does the job.
2019-10-19 12:54:16 +02:00
e51f6cee72
improved handling of string types for HDF5
...
- convert bytes to string when reading
- convert string to bytes when writing
2019-10-19 09:47:26 +02:00
5f0a48fae7
enhanced and documented
2019-10-19 08:51:51 +02:00
dc9aca5710
copy and paste error/invalid syntax
2019-10-18 20:57:36 +02:00
5858d03a6b
prospector complaints for stupid reasons
2019-10-18 20:55:39 +02:00
3336cfc3da
better have tensor functions available
...
allows in-memory evaluation of results
2019-10-18 20:50:03 +02:00
1a34a6f7b5
some useful tensor operations
2019-10-18 20:41:39 +02:00
47ba7d49b5
allow to use the same label twice in a function
2019-10-18 20:39:00 +02:00
de912c22b4
Merge branch 'development' into HDF5-spectral-displacements
2019-10-18 12:54:12 +02:00
91691744c6
Merge branch 'Marc-No-nonlocal' into 'development'
...
Marc no nonlocal
See merge request damask/DAMASK!98
2019-10-15 10:35:37 +02:00
708bbd3cb9
mesh/grid type transparent handling of coordinates
2019-10-12 16:15:04 +02:00
b208fa6565
takeover from Vitesh's work with small adoptions to current DADF5
2019-10-12 08:02:57 +02:00
0eef73935e
handling of derived types (orientation for the moment)
2019-10-11 08:35:21 +02:00
b8a1a5bb7d
v 0.2 is ok, not sure what the future brings so better check
2019-10-03 20:23:49 +02:00
0b29d08109
bump to DADF5 v0.3
...
contains displacements (for grid solver)
2019-10-03 19:02:17 +02:00
62fb4d2ea9
polishing
2019-10-01 14:30:09 -07:00
e96eb55edd
calculate different strain tensors
2019-09-30 14:28:58 -07:00
0e3b09adc1
negative eigenvalues are not possible
...
left/right Cauchy-Green Deformation Tensors are positive definit
https://de.wikipedia.org/wiki/Deformationsgradient
2019-09-30 14:12:15 -07:00
d95a795e3b
Merge branch 'MiscImprovements' into HDF5-spectral-displacements
2019-09-30 13:53:24 -07:00
0dd14a0652
correct reporting of version
2019-09-30 09:07:56 -07:00
457f9aa4e3
prospector found duplicated key
2019-09-30 08:53:53 -07:00
3206ee04bc
nodal displacements for grid solver
...
currently for non-MPI only
2019-09-27 20:38:02 -07:00
970d172160
correct message
2019-09-27 17:52:01 -07:00
ad83c8541d
same names as in python
2019-09-20 17:18:09 -07:00
fb61899c5f
seems that testing has Marc 2018.1 already
2019-09-20 20:54:30 +02:00
0b6620bfb7
Merge branch 'development' into MiscImprovements
...
F***ing commits to development!
2019-09-20 07:40:52 -07:00
4b2263bebe
conversion to float causes issues
...
test only current version of MSC.Marc
2019-09-20 03:21:53 +02:00
6fdab024b6
ensure that integer inputs to Rotation.fromX() translate into float quantities
2019-09-19 17:03:31 -04:00
7fd4b8bff6
more prospector hints
2019-09-19 12:51:16 -07:00
f1f88610dd
documenting
2019-09-19 12:32:15 -07:00
2e25a03d13
adopting to new prospector
2019-09-19 11:56:58 -07:00
35a009f513
prospector complaind
...
help details were anyway pretty useless
2019-09-19 11:41:41 -07:00
32639caec2
better readable
2019-09-19 11:12:44 -07:00
bf7db26680
Merge branch 'even-more-HDF5-postprocessing' into MiscImprovements
2019-09-19 10:49:14 -07:00
76b08e10bd
following stricter Python docstring standards
2019-09-18 21:43:43 -04:00
4994c86e67
bugfix: hard-wired keyword resulted in missing materialpoint results
2019-09-16 13:31:49 -07:00
ee1327c519
[skip ci] typo
2019-09-16 11:21:06 -07:00
28bb92021d
avoid code duplication
2019-09-16 11:04:05 -07:00
980c02b0c3
selected increments by simulation time
2019-09-15 20:19:14 -07:00
86fb0a7942
time info needed for filtering of increments
2019-09-15 20:04:52 -07:00
b3b710c848
polishing
2019-09-15 19:56:07 -07:00
4cedcee0b4
handling of increments follows handling of other 'visible'-items
2019-09-15 17:08:03 -07:00
f6ac8c995f
simplified and selected better names
2019-09-15 16:00:19 -07:00
c76d4d3f87
avoid unneeded arguments
2019-09-15 15:24:23 -07:00
88eba27cec
avoid name duplication + polishing
2019-09-15 15:10:32 -07:00
04aefa84bc
more appropriate names
2019-09-15 15:02:16 -07:00
d413aef7c3
functionality for general calculations on datasets
...
currently limited to vectorized expressions.
2019-09-14 12:00:23 -07:00
8251725bce
WIP: different norm types
2019-09-14 10:53:33 -07:00
e4e9c5f558
support glob matching
...
more flexibility in selecting active datasets and groups
2019-09-14 09:55:42 -07:00
b85ac11c49
implemented ideas from discussion with Philip
...
group matching unified and with wildcard support
time step handling should become more convenient (WIP)
add_norm can not compute abs of scalar, added function for that
general polishing here and there
2019-09-14 09:07:23 -07:00
c13db4b3ca
renaming
...
on_air/active are not clear. visible seems to be the most appropriate
name
2019-09-13 21:49:22 -07:00
898f53295d
iter functions for groups
...
restore original selection after iterating (i.e. temp setting of active)
polishing: correct names and more details for HDF5 meta data
2019-09-13 21:14:52 -07:00
69462f8190
polished
...
strain calculation agrees up to 1e-4 with results from addStrainTensors.
Not too exciting, but ok
2019-09-13 19:37:25 -07:00
38f6609ad7
high level functions for selecting output
...
tested Cauchy stress calculation (comparison with addCauchy.py)
2019-09-13 18:36:06 -07:00
c5006e264b
handling prospector complaints
2019-09-13 16:07:39 -07:00
002383afc2
solved problem with postprocessing
...
- to not 'try' with h5py library, it might have another 'try'. Check
explicitly for empty argument
also some polishing
2019-09-13 16:01:30 -07:00
b2b625af3e
notes from discussion with Philip
2019-09-13 15:17:46 -07:00
f83a167414
file mode for high level funtion not useful
2019-09-13 09:49:30 -07:00
6f008c5d5f
rewrite pointwise add function
...
- all vectorized: Much faster
- passing in all relevant information allows to do sanity checks and add
useful meta data in HDF5
- improved readability
2019-09-13 06:02:42 -07:00
3db3e9e762
preparing for use of optional arguments to function
2019-09-11 21:20:14 -07:00
de313269d9
bugfix
2019-09-11 18:54:54 -07:00
953ba53211
adjusting for strict prospector checking
2019-09-11 18:22:33 -07:00
a6c69a744b
do operations vectorized
2019-09-11 17:57:24 -07:00
462bb07efd
Merge branch 'development' into even-more-HDF5-postprocessing
2019-09-11 16:29:44 -07:00
bc893762ec
no need to inverse a rotation, transpose is faster
2019-09-11 07:29:34 -07:00
fa2c100d6a
need to update microstructure to get grid update
2019-09-04 20:20:55 -07:00
f415a8cad2
Merge branch 'PythonProspectorRules' into even-more-HDF5-postprocessing
2019-09-04 14:23:07 -07:00
28c11cc373
bugfix
...
-update function was resetting size if not given
-dim does not work an all terminals, therefore also emph new values in
addition to dim old ones
2019-09-04 11:14:44 -07:00
ef285b482f
more references + citation style correction
2019-09-04 08:55:05 -07:00
6f07a20919
not sure what this code was intended to do
2019-09-03 17:23:26 -07:00
3657f81c59
documenting (in accordance with new prospector rules)
2019-09-03 17:18:06 -07:00
a428a924eb
DAMASK default citation style
2019-09-03 16:34:02 -07:00
97fc8a4029
following python3 recommendations
2019-09-03 15:44:28 -07:00
234019bb4d
dummy stuff not needed
2019-09-03 15:41:16 -07:00
b0d3615d67
more detailed documentation
2019-09-03 15:32:01 -07:00
7d48764999
added documentation and references
2019-09-03 15:25:25 -07:00
a073f36471
update for solver wrappers
2019-09-03 09:48:42 -07:00
fea16327ac
now properly escaped
2019-09-02 23:42:34 -07:00
d84cef4fab
pep8: W605 / invalid escape sequence '\ ' seems to be a false positive
2019-09-02 23:37:52 -07:00
9cf4f9537e
documenting
2019-09-02 23:23:46 -07:00
ba395977db
adjusting to new prospector
2019-09-02 11:09:03 -07:00
34b3beda27
DefaultMap needed for newer paraview
2019-09-02 10:51:32 -07:00
c51cf8d506
transferring post processing capabilities
2019-07-15 13:55:14 -07:00
b6bb8a4650
simple strain calculation for DADF5
...
further enhancement requires to give optional arguments to
add_genericpontwise
2019-07-06 21:41:29 -07:00
b6830b3ac1
Merge branch 'development' into even-more-HDF5-postprocessing
2019-06-14 10:28:22 +02:00
cede188e76
enable to explicitly set the environment
...
required for running MPI processes when mpi4py is imported
2019-06-07 17:51:27 +02:00
1186bd16f5
Merge branch 'development' into even-more-HDF5-postprocessing
2019-06-04 22:39:10 +02:00
dff690611e
fixed origin bug in VTK; VTK can be float; size defaults to 1 as longest dimension
2019-06-03 13:29:30 -04:00
bf27505faa
Merge branch 'development' into geometry-class
2019-05-31 16:21:50 +02:00
37de73535d
following PEP style guide
2019-05-30 20:08:39 +02:00
4cb0ba3803
not needed anymore
2019-05-30 19:26:41 +02:00
46f0ad052e
direct support for vtk output
...
- geom_check can now handle multiple files
- microstructure index is stored as integer in vtk file
2019-05-30 15:35:45 +02:00
b00581f1be
less picky on allowed datatypes
2019-05-30 13:29:29 +02:00
931fa9d36a
standardized and cleaned
...
-write to file if given
-type casting is done in the geom class
2019-05-30 10:20:07 +02:00
f30eda0267
no need to loop over files
...
will procude the same file over and over again
2019-05-30 09:32:37 +02:00
17168525b6
use srepr in __repr__
2019-05-29 18:14:30 -06:00
6e790e845a
correct rescaling
2019-05-29 19:36:02 +02:00
669ca82ce1
formatted return message also on interactive shells
2019-05-28 09:05:10 +02:00
1f56ac6a4a
streamlining and bugfixing of geom-class
2019-05-27 22:45:34 -06:00
b69f0efbbc
improved and simplified reporting
2019-05-27 22:00:26 +02:00
615a4ab40f
keep float datatype
...
based on the assumption, that no mixed float/int data is stored
2019-05-27 09:56:15 +02:00
6e06764e2d
using (enhanced) central functionality
2019-05-27 08:38:02 +02:00
b5cec797c0
cleaned
2019-05-26 23:03:31 +02:00
c8dfba89e5
using class
...
still a very complex script
2019-05-26 22:49:05 +02:00
0da39b0c69
copy and paste error
2019-05-26 22:08:42 +02:00
0039ac9551
always add comment at beginning
...
usually, comments are related to the file history
2019-05-26 21:32:48 +02:00
7a500e77b1
not needed (DADF5 is the modern alternative)
2019-05-26 20:53:59 +02:00
07c9b8b8f0
avoiding unwanted changes
2019-05-26 20:28:19 +02:00
feb2340935
self-reporting functionality for updating
2019-05-26 17:58:54 +02:00
dcb79afc84
more user friendly errors
2019-05-26 12:03:21 +02:00
be3513d1e0
polishing.
...
python imports follow PEP8
2019-05-26 09:49:56 +02:00
9f63d768de
do not keep whitespaces
2019-05-25 13:48:38 +02:00
875643c363
same style
2019-05-25 10:24:45 +02:00
4788fc6046
making use of new class
...
@philip: 1D arrangement needed?
2019-05-25 08:37:02 +02:00
cf374a04dc
using new class
2019-05-25 08:21:00 +02:00
7b6003fb32
no need for numpy.loadtxt (not compatible with 'to' and 'of' compression
2019-05-25 08:17:51 +02:00
420abfa162
use new class
2019-05-24 22:34:27 +02:00
f20c8fcffd
easier generation and modificaton of grid geometries
...
fits better than the general ASCII table class
2019-05-24 22:30:25 +02:00
a280f9a4a2
polishing
2019-05-23 17:26:38 +02:00
f6dda99bfb
more post processing functionality
2019-05-23 08:54:20 +02:00
e7ca371b14
routines to do pointwise operations
2019-05-20 19:56:45 +02:00
118c74a268
enable materialpoint output again
...
accidently lost during a former commit
2019-05-16 22:01:12 +02:00
339b86f784
bugfix + more verbose reporting
2019-05-16 11:44:03 +02:00
9f7fa5393a
fix for scalar datasets
2019-05-16 09:31:13 +02:00
3c0c0a2cd1
more flexible in selecting data
2019-05-16 00:27:06 +02:00
c6863a6124
also consider homogenization/materialpoint results
2019-05-15 23:38:24 +02:00
4c7af713f1
added explicit method Rotation.fromBasis, which can treat real and reciprocal basis sets
2019-05-14 12:59:21 -04:00
f3c77cde87
Merge branch 'development' into MiscImprovements
2019-05-06 16:16:39 +02:00
9b0d3def1d
small changes suggested by Franz
2019-05-05 22:38:06 +02:00
39cc9e35ae
Merge branch 'development' into orientation_with_averaging
2019-05-05 22:12:09 +02:00
ebf01dee4f
store grid/size at geometry group
...
as outlined in the DAMASK results paper
2019-05-03 06:46:22 +02:00
b8bf329a74
Merge branch 'development' into MiscImprovements
2019-04-30 00:02:35 +02:00
327a8ab757
more details
2019-04-28 12:04:11 +02:00
c72518e52b
reflects current temp files
2019-04-28 07:22:12 +02:00
a5c620379b
tools to build a python wheel distribution
2019-04-26 20:54:58 +02:00
1ccc967544
enables auto include
2019-04-26 19:24:22 +02:00
1b9355327a
WIP: preparing for PIP package
2019-04-26 19:08:59 +02:00
009a47ad72
make python package independent from rest of DAMASK
...
https://packaging.python.org/guides/single-sourcing-package-version/
2019-04-25 20:05:42 +02:00
64c9a367c0
always install post processing scripts into {$DAMASK_ROOT}/bin
...
custom installation directions will be made available by more standard
approaches
2019-04-25 07:21:42 +02:00
53f6a4e030
too specific
...
- only works at MPIE
2019-04-25 06:00:56 +02:00
1330730717
inFZ needs 'proper' Rodriques--Franck vector
2019-04-19 09:04:54 +02:00
b97f10b6ff
forgotten changes in last commit + fromRandom
2019-04-19 08:17:02 +02:00
feca9fe0a0
Again changes to the return values.
...
A python function with no return value returns 'None'
2019-04-19 08:04:04 +02:00
9a43c2e4c5
fixed return values
...
- homomorph, standardize, etc. are silent in-place operations (return
None)
- homomorphed, standardized, etc. are out-of place operations that
report
2019-04-19 01:05:48 +02:00
25518df80c
fixes to quaternion class
...
- always store data as float (solves issues with truediv)
- fixed in-place multiplication and division
- consistent handling of "..ed()" functions
2019-04-19 00:44:12 +02:00
4183eeaeca
[skip ci] disorientation may return full-fledged orientation obj and aux info, added rotation.standardize(d)
2019-04-18 18:06:00 -04:00
c4f56703a4
proper definition of homomorph
2019-04-18 17:11:51 +02:00
7570b187e7
do explicit homomorphing
...
only in cases when the underlying math cannot guarantee that the
resulting quaternion follows the convention
2019-04-18 16:26:05 +02:00
e8464814ae
explicit is better than implicit
...
- if the quaternion does not follow the convention, use
"fromQuaternion(acceptHomomorph=True)"
2019-04-18 14:46:12 +02:00
71b0036323
return rotation as misorientation
2019-04-18 14:26:53 +02:00
481aac7952
misorientation calculation did not always follow convention
...
- return homomorphed quaternion to ensure that real component is > 0
(equivalent to have axis angle limited to [0, pi]
2019-04-18 13:46:58 +02:00
b746b841f7
not needed
2019-04-18 12:04:36 +02:00
6b7fd6b7ea
visualizing data from DADF5: first prototype
2019-04-18 11:58:17 +02:00
7177813710
adding data to geometry
2019-04-17 19:57:16 +02:00
fdd5b93e7c
avoid FPE exceptions
2019-04-17 15:19:41 +02:00
a6e6db0559
more stable/robust conversions
2019-04-17 12:52:48 +02:00
079e683dd1
disorientation returns Orientation, not Rotation
2019-04-17 10:48:18 +02:00
3f8c16262e
fixed import statement
...
previous form only worked in python/damask folder
2019-04-17 09:45:18 +02:00
8609eb6eb7
improved names and layout
2019-04-17 09:34:49 +02:00
c7c6627dfb
don't try to figure out the input
2019-04-17 08:49:26 +02:00
fa18200447
quaternion is now in separate module
...
avoid long modules with multiple, only loosely related classes
2019-04-17 08:46:03 +02:00
d842902a76
consistent ordering
...
- qu, om, eu, ax, ro, ho, cu
2019-04-16 21:47:29 +02:00
8eb1a35dfb
first version of a library to parse HDF5
...
- preliminarly called DADF5 (DAMASK HDF5)
- script to write (empty undeformed) geometries is also added
2019-04-13 11:25:53 +02:00
3a7408a213
averaging possible for rotations and orientations; Rodrigues 3Dvector output only at top-level; code reordering
2019-04-12 09:03:47 -04:00
3d6eb76da3
equivalentOrientations accepts scalar argument to directly return single rotation object (not single element list)
2019-04-11 19:07:41 -04:00
2190c3ef46
fixed serious disorientation bug; sorted transformation functions
2019-04-11 18:32:07 -04:00
b8285d5749
restored orientation averaging capability
2019-04-11 17:23:04 -04:00
019d1a9c5c
[skip ci] reference was wrong
2019-04-08 22:23:40 +02:00
dd51945570
checking for input errors
2019-03-28 07:25:20 +01:00
85a535b99c
is not used anymore
2019-03-07 22:35:43 +01:00
12587be595
was not used anymore
...
status bar can be used as a replacement, it does to flood log files as
extensively as the background thread
2019-03-07 20:48:09 +01:00
eada10548e
[skip ci] no blank line after progress bars
2019-02-27 08:38:06 -05:00
e88182b007
improved converte, now with test
...
still needs to figure out how +P is handled
2019-02-24 14:39:34 +01:00
56781dfa5b
fiber was never used here and will be remove anyway
...
more user friendly formatting
2019-02-24 10:32:28 +01:00
73f6cb7020
fixed datatype
2019-02-24 09:12:21 +01:00
d3ac3cc0f5
using new Orientation class
2019-02-24 08:34:20 +01:00
9dc8dff4b1
cleaning and adding compatibility layer
2019-02-23 22:35:04 +01:00
b3455c825e
transition to new orientation class
...
forward-backward conversion quite stable
2019-02-23 21:49:05 +01:00
93ae5cbd07
Merge remote-tracking branch 'origin/development' into 10-consistent-orientation-conversions-3
2019-02-22 23:05:36 +01:00
43376c39d8
addGrainID parses in quaternion
2019-02-22 11:25:39 +01:00
907f7ca560
transition to new class
2019-02-21 13:33:22 +01:00
88fc37d8a7
some more work on python3 compatible scripts
2019-02-15 16:22:52 +01:00
8b82941014
only Abaqus 2019 is available
2019-02-15 14:26:08 +01:00
c50078bafc
short version not needed any more
...
Abaqus version is year
2019-02-15 14:22:26 +01:00
608852df83
rotation paper has angle as last component
2019-02-12 10:58:38 +01:00
7da8980cc0
bugfixes: wrong shape, wrong conversion
2019-02-12 09:04:35 +01:00
336a80091f
rodrigues is 4-vector with rotation being the last component
...
established a single source of truth for length
2019-02-12 08:59:26 +01:00
97ac437686
more user friendly constructors
2019-02-12 08:14:27 +01:00
ef3fc0b58a
bugfix: wrong array indexing
...
rotation of meshgrid tuple implemented
2019-02-12 07:42:46 +01:00
4215ae3888
rotation of matrix is defined in class
2019-02-12 06:32:26 +01:00
e47c275e0c
unknown encoding caused problem (on python2?)
2019-02-12 06:18:21 +01:00
48b0307fab
using new rotation class
...
cannot rotate matrices (3,3) and (3,3,3,3) at the moment
2019-02-12 00:27:13 +01:00
7ee933b79d
Rotation class
...
uses (and hides) Quaternion2. Should replace Quaternion class.
Orientation class should inherit from Rotation and adds symmetry.
2019-02-11 23:50:02 +01:00
e931b716fd
conversion routines from Marc de Graefs 3D rotation repository
...
Python version available on https://github.com/MarDiehl/3Drotations
2019-02-11 23:15:19 +01:00
40740b831e
reverted code removal
...
was not "just commented out" but served as documentation. now easier to
see
2019-02-04 00:10:49 +01:00
9a4e9e62b6
using new rotation class
2019-02-01 20:28:51 +01:00
878331e5e9
this code was never used and is quite old
2019-02-01 19:29:19 +01:00
e6fe312f85
Corrected documented value for P (= -1!). Instead of repeating the assignment P=-1 in multiple internal functions, it might be advisable to define a class-wide parameter?
2019-02-01 14:04:55 +01:00
11a509970b
some comments
2019-02-01 10:17:20 +01:00
45d11f81b0
python cleaning
2019-01-05 10:55:28 +01:00
02ab55d4b3
python reflects content better than lib
2019-01-05 10:52:39 +01:00
Martin Diehl