Merge branch 'development' into python-module

This commit is contained in:
Martin Diehl 2020-01-14 08:58:19 +01:00
commit af42eae9c1
76 changed files with 858 additions and 2278 deletions

View File

@ -113,13 +113,11 @@ if (DAMASK_SOLVER STREQUAL "grid")
elseif (DAMASK_SOLVER STREQUAL "fem" OR DAMASK_SOLVER STREQUAL "mesh")
project (damask-mesh Fortran C)
add_definitions (-DFEM)
message ("Building FEM Solver\n")
message ("Building Mesh Solver\n")
else ()
message (FATAL_ERROR "Build target (DAMASK_SOLVER) is not defined")
endif ()
# set linker commands (needs to be done after defining the project)
set (CMAKE_LINKER "${PETSC_LINKER}")
list(APPEND CMAKE_MODULE_PATH ${PROJECT_SOURCE_DIR}/cmake)
if (CMAKE_BUILD_TYPE STREQUAL "")
set (CMAKE_BUILD_TYPE "RELEASE")
@ -168,9 +166,6 @@ add_definitions (-DDAMASKVERSION="${DAMASK_V}")
# definition of other macros
add_definitions (-DPETSc)
set (DAMASK_INCLUDE_FLAGS "${DAMASK_INCLUDE_FLAGS} ${PETSC_INCLUDES}")
list(APPEND CMAKE_MODULE_PATH ${PROJECT_SOURCE_DIR}/cmake)
if (CMAKE_Fortran_COMPILER_ID STREQUAL "Intel")
include(Compiler-Intel)
elseif(CMAKE_Fortran_COMPILER_ID STREQUAL "GNU")
@ -183,14 +178,14 @@ endif ()
set (CMAKE_Fortran_FLAGS_${CMAKE_BUILD_TYPE} "${BUILDCMD_PRE} ${OPENMP_FLAGS} ${STANDARD_CHECK} ${OPTIMIZATION_FLAGS} ${COMPILE_FLAGS} ${PRECISION_FLAGS}")
set (CMAKE_Fortran_LINK_EXECUTABLE "${BUILDCMD_PRE} ${CMAKE_LINKER} ${OPENMP_FLAGS} ${OPTIMIZATION_FLAGS} ${LINKER_FLAGS}")
set (CMAKE_Fortran_LINK_EXECUTABLE "${BUILDCMD_PRE} ${PETSC_LINKER} ${OPENMP_FLAGS} ${OPTIMIZATION_FLAGS} ${LINKER_FLAGS}")
if (CMAKE_BUILD_TYPE STREQUAL "DEBUG")
set (CMAKE_Fortran_FLAGS_${CMAKE_BUILD_TYPE} "${CMAKE_Fortran_FLAGS_${CMAKE_BUILD_TYPE}} ${DEBUG_FLAGS}")
set (CMAKE_Fortran_LINK_EXECUTABLE "${CMAKE_Fortran_LINK_EXECUTABLE} ${DEBUG_FLAGS}")
endif ()
set (CMAKE_Fortran_FLAGS_${CMAKE_BUILD_TYPE} "${CMAKE_Fortran_FLAGS_${CMAKE_BUILD_TYPE}} ${DAMASK_INCLUDE_FLAGS} ${BUILDCMD_POST}")
set (CMAKE_Fortran_FLAGS_${CMAKE_BUILD_TYPE} "${CMAKE_Fortran_FLAGS_${CMAKE_BUILD_TYPE}} ${PETSC_INCLUDES} ${BUILDCMD_POST}")
set (CMAKE_Fortran_LINK_EXECUTABLE "${CMAKE_Fortran_LINK_EXECUTABLE} <OBJECTS> -o <TARGET> <LINK_LIBRARIES> ${PETSC_EXTERNAL_LIB} ${BUILDCMD_POST}")
message ("Fortran Compiler Flags:\n${CMAKE_Fortran_FLAGS_${CMAKE_BUILD_TYPE}}\n")

View File

@ -1,4 +1,4 @@
Copyright 2011-19 Max-Planck-Institut für Eisenforschung GmbH
Copyright 2011-20 Max-Planck-Institut für Eisenforschung GmbH
DAMASK is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by

View File

@ -26,7 +26,7 @@ build/grid:
.PHONY: build/mesh
build/mesh:
@mkdir -p build/mesh
@(cd build/mesh; cmake -Wno-dev -DDAMASK_SOLVER=FEM -DCMAKE_INSTALL_PREFIX=${DAMASK_ROOT} -DCMAKE_BUILD_TYPE=${BUILD_TYPE} -DBUILDCMD_POST=${BUILDCMD_POST} -DBUILDCMD_PRE=${BUILDCMD_PRE} -DOPTIMIZATION=${OPTIMIZATION} -DOPENMP=${OPENMP} ../../;)
@(cd build/mesh; cmake -Wno-dev -DDAMASK_SOLVER=MESH -DCMAKE_INSTALL_PREFIX=${DAMASK_ROOT} -DCMAKE_BUILD_TYPE=${BUILD_TYPE} -DBUILDCMD_POST=${BUILDCMD_POST} -DBUILDCMD_PRE=${BUILDCMD_PRE} -DOPTIMIZATION=${OPTIMIZATION} -DOPENMP=${OPENMP} ../../;)
.PHONY: clean
clean:

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@ -1 +1 @@
v2.0.3-1406-g5fc1abae
v2.0.3-1484-g93fca511

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@ -1,2 +1,2 @@
[001]
(gauss) phi1 0.000 Phi 0.000 phi2 0.000 scatter 0.000 fraction 1.000
(gauss) phi1 0.000 Phi 0.000 phi2 0.000

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@ -1,2 +1,2 @@
[101]
(gauss) phi1 0.000 Phi 45.000 phi2 90.000 scatter 0.000 fraction 1.000
(gauss) phi1 0.000 Phi 45.000 phi2 90.000

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@ -1,2 +1,2 @@
[111]
(gauss) phi1 0.000 Phi 54.7356 phi2 45.000 scatter 0.000 fraction 1.000
(gauss) phi1 0.000 Phi 54.7356 phi2 45.000

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@ -1,2 +1,2 @@
[123]
(gauss) phi1 209.805 Phi 29.206 phi2 63.435 scatter 0.000 fraction 1.000
(gauss) phi1 209.805 Phi 29.206 phi2 63.435

View File

@ -4,14 +4,6 @@
[SX]
mech none
#-------------------#
<crystallite>
#-------------------#
[aLittleSomething]
(output) f
(output) p
#-------------------#
<phase>
#-------------------#
@ -50,408 +42,212 @@ interaction_twinslip 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
interaction_twintwin 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
atol_resistance 1
(output) f
(output) p
#-------------------#
<microstructure>
#-------------------#
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crystallite 1
(constituent) phase 1 texture 1 fraction 1.0
[Grain002]
crystallite 1
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[Grain003]
crystallite 1
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[Grain004]
crystallite 1
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[Grain005]
crystallite 1
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[Grain006]
crystallite 1
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[Grain007]
crystallite 1
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[Grain008]
crystallite 1
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[Grain010]
crystallite 1
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[Grain011]
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[Grain012]
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[Grain013]
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[Grain014]
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[Grain015]
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[Grain016]
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[Grain019]
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[Grain020]
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#-------------------#
@ -459,301 +255,202 @@ crystallite 1
#-------------------#
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(gauss) phi1 290.326 Phi 170.412 phi2 144.269
[Grain060]
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(gauss) phi1 204.748 Phi 76.7343 phi2 200.385
[Grain061]
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(gauss) phi1 54.3015 Phi 65.9143 phi2 117.373
[Grain062]
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[Grain063]
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[Grain064]
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[Grain065]
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[Grain066]
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[Grain067]
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[Grain068]
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[Grain069]
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(gauss) phi1 16.86 Phi 53.8682 phi2 256.917
[Grain070]
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[Grain071]
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(gauss) phi1 19.0397 Phi 83.8885 phi2 262.687
[Grain072]
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(gauss) phi1 99.799 Phi 77.2307 phi2 84.9727
[Grain073]
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(gauss) phi1 234.292 Phi 63.5029 phi2 250.315
[Grain074]
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(gauss) phi1 315.529 Phi 106.015 phi2 103.711
[Grain075]
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(gauss) phi1 235.595 Phi 110.152 phi2 210.277
[Grain076]
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[Grain077]
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(gauss) phi1 352.166 Phi 88.6049 phi2 114.964
[Grain078]
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(gauss) phi1 342.33 Phi 117.777 phi2 180.346
[Grain079]
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(gauss) phi1 224.952 Phi 70.5702 phi2 148.486
[Grain080]
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(gauss) phi1 7.71702 Phi 23.6124 phi2 131.591
[Grain081]
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(gauss) phi1 65.1024 Phi 138.774 phi2 247.344
[Grain082]
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(gauss) phi1 37.6181 Phi 51.5209 phi2 8.4169
[Grain083]
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(gauss) phi1 245.335 Phi 53.4543 phi2 52.5205
[Grain084]
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(gauss) phi1 259.572 Phi 87.7026 phi2 272.065
[Grain085]
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(gauss) phi1 269.39 Phi 103.379 phi2 132.506
[Grain086]
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(gauss) phi1 175.156 Phi 119.338 phi2 355.51
[Grain087]
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(gauss) phi1 248.11 Phi 39.4772 phi2 310.371
[Grain088]
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(gauss) phi1 121.809 Phi 141.465 phi2 10.0736
[Grain089]
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(gauss) phi1 2.4357 Phi 47.118 phi2 274.654
[Grain090]
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(gauss) phi1 314.188 Phi 134.146 phi2 250.673
[Grain091]
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(gauss) phi1 114.815 Phi 121.132 phi2 275.124
[Grain092]
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(gauss) phi1 126.699 Phi 99.0325 phi2 320.537
[Grain093]
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(gauss) phi1 184.138 Phi 20.1663 phi2 159.314
[Grain094]
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(gauss) phi1 296.502 Phi 15.2389 phi2 39.382
[Grain095]
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(gauss) phi1 167.8 Phi 151.764 phi2 192.568
[Grain096]
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(gauss) phi1 257.822 Phi 133.446 phi2 257.108
[Grain097]
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(gauss) phi1 71.6923 Phi 74.5726 phi2 342.575
[Grain098]
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(gauss) phi1 176.748 Phi 28.39 phi2 327.375
[Grain099]
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(gauss) phi1 121.822 Phi 141.836 phi2 22.6349
[Grain100]
(gauss) phi1 180.151 Phi 109.246 phi2 146.177 scatter 0.0 fraction 1.0
(gauss) phi1 180.151 Phi 109.246 phi2 146.177

View File

@ -9,307 +9,206 @@
#-------------------#
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[cubeGrain]
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#-------------------#
@ -317,214 +216,209 @@ crystallite 1
#-------------------#
[Grain001]
(gauss) phi1 359.121452 Phi 82.319471 Phi2 347.729535 scatter 0 fraction 1
(gauss) phi1 359.121452 Phi 82.319471 Phi2 347.729535
[Grain002]
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(gauss) phi1 269.253967 Phi 105.379919 Phi2 173.029284
[Grain003]
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(gauss) phi1 26.551535 Phi 171.606752 Phi2 124.949264
[Grain004]
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(gauss) phi1 123.207774 Phi 124.339577 Phi2 47.937748
[Grain005]
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(gauss) phi1 324.188825 Phi 103.089216 Phi2 160.373624
[Grain006]
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(gauss) phi1 238.295585 Phi 165.416882 Phi2 234.307741
[Grain007]
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(gauss) phi1 232.707177 Phi 110.733726 Phi2 308.049265
[Grain008]
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(gauss) phi1 144.463291 Phi 125.891441 Phi2 348.674207
[Grain009]
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(gauss) phi1 215.423832 Phi 69.759502 Phi2 164.477632
[Grain010]
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(gauss) phi1 118.805444 Phi 143.057031 Phi2 271.963190
[Grain011]
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(gauss) phi1 218.049576 Phi 64.017550 Phi2 323.040457
[Grain012]
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(gauss) phi1 236.962483 Phi 134.312093 Phi2 220.433366
[Grain013]
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(gauss) phi1 352.317686 Phi 3.356527 Phi2 92.447275
[Grain014]
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(gauss) phi1 198.311545 Phi 71.452240 Phi2 199.441849
[Grain015]
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[Grain016]
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[Grain017]
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(gauss) phi1 53.220668 Phi 69.570254 Phi2 277.061151
[Grain018]
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(gauss) phi1 122.156119 Phi 140.207051 Phi2 221.172906
[Grain019]
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(gauss) phi1 295.422170 Phi 26.595511 Phi2 263.206315
[Grain020]
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(gauss) phi1 179.137406 Phi 104.500977 Phi2 151.742108
[Grain021]
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[Grain022]
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[Grain023]
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[Grain024]
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[Grain025]
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[Grain026]
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[Grain027]
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[Grain028]
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[Grain029]
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[Grain030]
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[Grain031]
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[Grain032]
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[Grain033]
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[Grain034]
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[Grain035]
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[Grain036]
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[Grain037]
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[Grain038]
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[Grain039]
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[Grain040]
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[Grain041]
(gauss) phi1 268.753103 Phi 46.654050 Phi2 190.382041 scatter 0 fraction 1
(gauss) phi1 268.753103 Phi 46.654050 Phi2 190.382041
[Grain042]
(gauss) phi1 239.574480 Phi 62.517793 Phi2 147.817535 scatter 0 fraction 1
(gauss) phi1 239.574480 Phi 62.517793 Phi2 147.817535
[Grain043]
(gauss) phi1 128.059775 Phi 61.916743 Phi2 169.674359 scatter 0 fraction 1
(gauss) phi1 128.059775 Phi 61.916743 Phi2 169.674359
[Grain044]
(gauss) phi1 166.545156 Phi 58.709099 Phi2 252.885391 scatter 0 fraction 1
(gauss) phi1 166.545156 Phi 58.709099 Phi2 252.885391
[Grain045]
(gauss) phi1 92.867691 Phi 28.906456 Phi2 164.197290 scatter 0 fraction 1
(gauss) phi1 92.867691 Phi 28.906456 Phi2 164.197290
[Grain046]
(gauss) phi1 291.056147 Phi 35.145174 Phi2 250.155599 scatter 0 fraction 1
(gauss) phi1 291.056147 Phi 35.145174 Phi2 250.155599
[Grain047]
(gauss) phi1 79.015862 Phi 44.772479 Phi2 267.982808 scatter 0 fraction 1
(gauss) phi1 79.015862 Phi 44.772479 Phi2 267.982808
[Grain048]
(gauss) phi1 108.400702 Phi 69.883075 Phi2 222.737053 scatter 0 fraction 1
(gauss) phi1 108.400702 Phi 69.883075 Phi2 222.737053
[Grain049]
(gauss) phi1 348.326500 Phi 11.339714 Phi2 121.682346 scatter 0 fraction 1
(gauss) phi1 348.326500 Phi 11.339714 Phi2 121.682346
[Grain050]
(gauss) phi1 331.476209 Phi 108.775043 Phi2 335.139671 scatter 0 fraction 1
(gauss) phi1 331.476209 Phi 108.775043 Phi2 335.139671
[Grain051]
(gauss) phi1 196.750278 Phi 93.955106 Phi2 63.689075 scatter 0 fraction 1
(gauss) phi1 196.750278 Phi 93.955106 Phi2 63.689075
[Grain052]
(gauss) phi1 136.077875 Phi 130.508342 Phi2 128.468976 scatter 0 fraction 1
(gauss) phi1 136.077875 Phi 130.508342 Phi2 128.468976
[Grain053]
(gauss) phi1 239.643513 Phi 76.284643 Phi2 168.821008 scatter 0 fraction 1
(gauss) phi1 239.643513 Phi 76.284643 Phi2 168.821008
[Grain054]
(gauss) phi1 113.850670 Phi 117.531757 Phi2 71.971648 scatter 0 fraction 1
(gauss) phi1 113.850670 Phi 117.531757 Phi2 71.971648
[Grain055]
(gauss) phi1 149.554071 Phi 16.543098 Phi2 195.556172 scatter 0 fraction 1
(gauss) phi1 149.554071 Phi 16.543098 Phi2 195.556172
[Grain056]
(gauss) phi1 46.626579 Phi 52.447846 Phi2 304.495569 scatter 0 fraction 1
(gauss) phi1 46.626579 Phi 52.447846 Phi2 304.495569
[Grain057]
(gauss) phi1 255.251821 Phi 86.678048 Phi2 238.982712 scatter 0 fraction 1
(gauss) phi1 255.251821 Phi 86.678048 Phi2 238.982712
[Grain058]
(gauss) phi1 324.266133 Phi 28.075458 Phi2 41.191295 scatter 0 fraction 1
(gauss) phi1 324.266133 Phi 28.075458 Phi2 41.191295
[Grain059]
(gauss) phi1 312.000332 Phi 74.648725 Phi2 87.403581 scatter 0 fraction 1
(gauss) phi1 312.000332 Phi 74.648725 Phi2 87.403581
[Grain060]
(gauss) phi1 57.742481 Phi 163.241519 Phi2 68.491438 scatter 0 fraction 1
(gauss) phi1 57.742481 Phi 163.241519 Phi2 68.491438
[Grain061]
(gauss) phi1 112.442447 Phi 51.735320 Phi2 206.538656 scatter 0 fraction 1
(gauss) phi1 112.442447 Phi 51.735320 Phi2 206.538656
[Grain062]
(gauss) phi1 297.453842 Phi 115.283041 Phi2 57.785319 scatter 0 fraction 1
(gauss) phi1 297.453842 Phi 115.283041 Phi2 57.785319
[Grain063]
(gauss) phi1 119.132681 Phi 117.923565 Phi2 196.121206 scatter 0 fraction 1
(gauss) phi1 119.132681 Phi 117.923565 Phi2 196.121206
[Grain064]
(gauss) phi1 199.267314 Phi 163.091476 Phi2 53.549301 scatter 0 fraction 1
(gauss) phi1 199.267314 Phi 163.091476 Phi2 53.549301
[Grain065]
(gauss) phi1 37.765215 Phi 76.795488 Phi2 146.264753 scatter 0 fraction 1
(gauss) phi1 37.765215 Phi 76.795488 Phi2 146.264753
[Grain066]
(gauss) phi1 324.550183 Phi 27.665150 Phi2 56.383148 scatter 0 fraction 1
(gauss) phi1 324.550183 Phi 27.665150 Phi2 56.383148
[Grain067]
(gauss) phi1 337.305377 Phi 136.807151 Phi2 133.661586 scatter 0 fraction 1
(gauss) phi1 337.305377 Phi 136.807151 Phi2 133.661586
[Grain068]
(gauss) phi1 115.744041 Phi 64.536978 Phi2 262.694800 scatter 0 fraction 1
(gauss) phi1 115.744041 Phi 64.536978 Phi2 262.694800
[Grain069]
(gauss) phi1 136.293403 Phi 48.862462 Phi2 343.319175 scatter 0 fraction 1
(gauss) phi1 136.293403 Phi 48.862462 Phi2 343.319175
[Grain070]
(gauss) phi1 111.030931 Phi 80.823213 Phi2 84.041594 scatter 0 fraction 1
(gauss) phi1 111.030931 Phi 80.823213 Phi2 84.041594
[Grain071]
(gauss) phi1 303.985249 Phi 118.929631 Phi2 302.307709 scatter 0 fraction 1
(gauss) phi1 303.985249 Phi 118.929631 Phi2 302.307709
[Grain072]
(gauss) phi1 193.556259 Phi 75.928015 Phi2 176.696899 scatter 0 fraction 1
(gauss) phi1 193.556259 Phi 75.928015 Phi2 176.696899
[Grain073]
(gauss) phi1 102.543259 Phi 121.929923 Phi2 234.496773 scatter 0 fraction 1
(gauss) phi1 102.543259 Phi 121.929923 Phi2 234.496773
[Grain074]
(gauss) phi1 218.581323 Phi 101.753894 Phi2 305.566089 scatter 0 fraction 1
(gauss) phi1 218.581323 Phi 101.753894 Phi2 305.566089
[Grain075]
(gauss) phi1 229.542114 Phi 118.839215 Phi2 129.179156 scatter 0 fraction 1
(gauss) phi1 229.542114 Phi 118.839215 Phi2 129.179156
[Grain076]
(gauss) phi1 202.258840 Phi 139.205956 Phi2 352.248979 scatter 0 fraction 1
(gauss) phi1 202.258840 Phi 139.205956 Phi2 352.248979
[Grain077]
(gauss) phi1 137.954289 Phi 63.806918 Phi2 128.975049 scatter 0 fraction 1
(gauss) phi1 137.954289 Phi 63.806918 Phi2 128.975049
[Grain078]
(gauss) phi1 327.557366 Phi 84.987420 Phi2 345.483143 scatter 0 fraction 1
(gauss) phi1 327.557366 Phi 84.987420 Phi2 345.483143
[Grain079]
(gauss) phi1 334.610243 Phi 74.535474 Phi2 106.419231 scatter 0 fraction 1
(gauss) phi1 334.610243 Phi 74.535474 Phi2 106.419231
[Grain080]
(gauss) phi1 62.906243 Phi 46.752029 Phi2 222.692276 scatter 0 fraction 1
(gauss) phi1 62.906243 Phi 46.752029 Phi2 222.692276
[Grain081]
(gauss) phi1 254.121439 Phi 121.005485 Phi2 287.265977 scatter 0 fraction 1
(gauss) phi1 254.121439 Phi 121.005485 Phi2 287.265977
[Grain082]
(gauss) phi1 140.765045 Phi 141.268031 Phi2 271.327656 scatter 0 fraction 1
(gauss) phi1 140.765045 Phi 141.268031 Phi2 271.327656
[Grain083]
(gauss) phi1 10.726984 Phi 66.339177 Phi2 189.073212 scatter 0 fraction 1
(gauss) phi1 10.726984 Phi 66.339177 Phi2 189.073212
[Grain084]
(gauss) phi1 270.921536 Phi 72.821127 Phi2 313.590515 scatter 0 fraction 1
(gauss) phi1 270.921536 Phi 72.821127 Phi2 313.590515
[Grain085]
(gauss) phi1 299.059668 Phi 23.884874 Phi2 80.016277 scatter 0 fraction 1
(gauss) phi1 299.059668 Phi 23.884874 Phi2 80.016277
[Grain086]
(gauss) phi1 208.617406 Phi 11.031834 Phi2 302.388247 scatter 0 fraction 1
(gauss) phi1 208.617406 Phi 11.031834 Phi2 302.388247
[Grain087]
(gauss) phi1 62.929967 Phi 65.223261 Phi2 108.558265 scatter 0 fraction 1
(gauss) phi1 62.929967 Phi 65.223261 Phi2 108.558265
[Grain088]
(gauss) phi1 9.014959 Phi 33.542169 Phi2 247.970366 scatter 0 fraction 1
(gauss) phi1 9.014959 Phi 33.542169 Phi2 247.970366
[Grain089]
(gauss) phi1 272.432808 Phi 30.065174 Phi2 19.803570 scatter 0 fraction 1
(gauss) phi1 272.432808 Phi 30.065174 Phi2 19.803570
[Grain090]
(gauss) phi1 179.621980 Phi 151.763475 Phi2 61.871794 scatter 0 fraction 1
(gauss) phi1 179.621980 Phi 151.763475 Phi2 61.871794
[Grain091]
(gauss) phi1 247.810321 Phi 112.752980 Phi2 264.668469 scatter 0 fraction 1
(gauss) phi1 247.810321 Phi 112.752980 Phi2 264.668469
[Grain092]
(gauss) phi1 270.780630 Phi 102.037858 Phi2 31.602610 scatter 0 fraction 1
(gauss) phi1 270.780630 Phi 102.037858 Phi2 31.602610
[Grain093]
(gauss) phi1 17.626672 Phi 56.032415 Phi2 245.079600 scatter 0 fraction 1
(gauss) phi1 17.626672 Phi 56.032415 Phi2 245.079600
[Grain094]
(gauss) phi1 112.165186 Phi 87.390459 Phi2 182.086729 scatter 0 fraction 1
(gauss) phi1 112.165186 Phi 87.390459 Phi2 182.086729
[Grain095]
(gauss) phi1 157.869381 Phi 79.905131 Phi2 107.037081 scatter 0 fraction 1
(gauss) phi1 157.869381 Phi 79.905131 Phi2 107.037081
[Grain096]
(gauss) phi1 106.163846 Phi 148.477084 Phi2 350.980466 scatter 0 fraction 1
(gauss) phi1 106.163846 Phi 148.477084 Phi2 350.980466
[Grain097]
(gauss) phi1 262.138550 Phi 58.923588 Phi2 111.303439 scatter 0 fraction 1
(gauss) phi1 262.138550 Phi 58.923588 Phi2 111.303439
[Grain098]
(gauss) phi1 88.739397 Phi 119.092789 Phi2 222.502594 scatter 0 fraction 1
(gauss) phi1 88.739397 Phi 119.092789 Phi2 222.502594
[Grain099]
(gauss) phi1 337.603765 Phi 10.145102 Phi2 80.934916 scatter 0 fraction 1
(gauss) phi1 337.603765 Phi 10.145102 Phi2 80.934916
[Grain100]
(gauss) phi1 341.022242 Phi 45.927285 Phi2 252.045476 scatter 0 fraction 1
(gauss) phi1 341.022242 Phi 45.927285 Phi2 252.045476
[cube]
(gauss) phi1 0 Phi 0 phi2 0 scatter 0 fraction 1
(gauss) phi1 0 Phi 0 phi2 0
#-------------------#
<crystallite>
#-------------------#
{../ConfigFiles/Crystallite_All.config}
#-------------------#
<phase>

View File

@ -1,94 +0,0 @@
2 header
$Id: postResults 861 2011-05-06 10:00:27Z MPIE\c.kords $
inc time elem node ip grain ip.x ip.y ip.z CauchyStress.intensity CauchyStress.t11 CauchyStress.t22 CauchyStress.t33 CauchyStress.t12 CauchyStress.t23 CauchyStress.t13 1_1_f 1_2_f 1_3_f 1_4_f 1_5_f 1_6_f 1_7_f 1_8_f 1_9_f 1_1_grainrotation 1_2_grainrotation 1_3_grainrotation 1_4_grainrotation 1_1_resistance_slip 1_2_resistance_slip 1_3_resistance_slip 1_4_resistance_slip 1_5_resistance_slip 1_6_resistance_slip 1_7_resistance_slip 1_8_resistance_slip 1_9_resistance_slip 1_10_resistance_slip 1_11_resistance_slip 1_12_resistance_slip
0 0.0 1 5 1 1 0.5 0.5 0.5 0.0 0.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0 0.0 0.0 1.0 0.0 0.0 0.0 1.0 0.0 0.0 0.0 0.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0
1 1.0 1 5 1 1 0.5 0.5 0.5 0.024172998067 0.056046936661 0.0577092021704 0.0580734722316 0.0075496127829 0.00882737897336 0.00766104180366 1.0 1.1259596093e-13 1.12595994811e-13 1.55780499177e-13 0.999847710133 -0.0174524057657 1.55782193243e-13 0.0174524057657 0.999847710133 1.0 -1.23725617425e-12 1.23720879461e-12 1.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0
2 2.0 1 5 1 1 0.5 0.5 0.5 0.0241432830571 0.0377263836563 0.0324090756476 0.033376660198 0.00727691268548 0.00865175202489 0.00764666078612 1.0 1.10501743118e-13 1.10501777e-13 1.50193822223e-13 0.99939084053 -0.034899495542 1.55527744546e-13 0.034899495542 0.99939084053 1.0 -6.45080505939e-13 5.68662738426e-13 2.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0
3 3.0 1 5 1 1 0.5 0.5 0.5 0.0257848323757 0.0201567672193 0.00817993376404 0.00972554087639 0.00701188668609 0.00847246591002 0.00763081293553 1.0 1.08486407791e-13 1.08486434896e-13 1.447601533e-13 0.998629510403 -0.0523359552026 1.55243941075e-13 0.0523359552026 0.998629510403 1.0 -4.46705416797e-13 3.46547009838e-13 3.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0
4 4.0 1 5 1 1 0.5 0.5 0.5 0.0286209738301 0.00342932180502 -0.0149000706151 -0.0128218811005 0.00675505120307 0.00828998535872 0.0076136472635 1.0 1.06547922069e-13 1.06547949174e-13 1.39501515266e-13 0.997564077377 -0.0697564706206 1.54932937682e-13 0.0697564706206 0.997564077377 1.0 -3.46813588048e-13 2.36204529243e-13 4.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0
5 5.0 1 5 1 1 0.5 0.5 0.5 0.032148640163 -0.0124530605972 -0.0368128865957 -0.0341981202364 0.00650494545698 0.00810338370502 0.00759505899623 1.0 1.04684232745e-13 1.04684253074e-13 1.34370257434e-13 0.996194720268 -0.0871557444334 1.54588120733e-13 0.0871557444334 0.996194720268 1.0 -2.8629133569e-13 1.70304512138e-13 5.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0
6 6.0 1 5 1 1 0.5 0.5 0.5 0.0360145416329 -0.027449907735 -0.0575108379126 -0.0543776340783 0.00626290449873 0.00791467912495 0.0075753852725 1.0 1.02893266281e-13 1.0289328661e-13 1.29417364412e-13 0.994521915913 -0.104528464377 1.54218746606e-13 0.104528464377 0.994521915913 1.0 -2.45509477548e-13 1.26874964528e-13 6.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0
7 7.0 1 5 1 1 0.5 0.5 0.5 0.0399740663918 -0.0415176264942 -0.0769297853112 -0.0733039304614 0.00602708896622 0.00772315822542 0.00755509966984 1.0 1.01173003352e-13 1.01173016904e-13 1.24581768512e-13 0.992546141148 -0.121869340539 1.5383908611e-13 0.121869340539 0.992546141148 1.0 -2.1607593644e-13 9.60403970436e-14 7.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0
8 8.0 1 5 1 1 0.5 0.5 0.5 0.0438656010832 -0.0547002702951 -0.0950862541795 -0.0910048484802 0.00579795939848 0.0075320713222 0.00753418169916 1.0 9.95214110774e-14 9.952142463e-14 1.19883541028e-13 0.990268051624 -0.139173105359 1.5344615769e-13 0.139173105359 0.990268051624 1.0 -1.93732616754e-13 7.31539937134e-14 8.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0
9 9.0 1 5 1 1 0.5 0.5 0.5 0.0476265064906 -0.06693007797 -0.111963532865 -0.107425913215 0.00557443965226 0.00733647309244 0.00751292472705 1.0 9.79365107892e-14 9.79365175654e-14 1.15288543144e-13 0.987688362598 -0.156434461474 1.53048269045e-13 0.156434461474 0.987688362598 1.0 -1.7614966289e-13 5.54610577028e-14 9.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0
10 10.0 1 5 1 1 0.5 0.5 0.5 0.0511619284052 -0.0781974568963 -0.127493560314 -0.122531078756 0.00535882124677 0.00714056473225 0.00749061629176 1.0 9.64163509231e-14 9.64163509231e-14 1.10881335851e-13 0.984807729721 -0.173648178577 1.52618409989e-13 0.173648178577 0.984807729721 1.0 -1.61827379296e-13 4.16502735892e-14 10.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0
11 11.0 1 5 1 1 0.5 0.5 0.5 0.0544590124719 -0.088471762836 -0.141687169671 -0.136302277446 0.0051483400166 0.00694213900715 0.00746928341687 1.0 9.49590273492e-14 9.49590341255e-14 1.06568040796e-13 0.981627166271 -0.190808996558 1.52226335378e-13 0.190808996558 0.981627166271 1.0 -1.50064490456e-13 3.04205106743e-14 11.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0
12 12.0 1 5 1 1 0.5 0.5 0.5 0.0574517639017 -0.0978478044271 -0.154580652714 -0.148810505867 0.00494291307405 0.00674560666084 0.00744635425508 1.0 9.35626969238e-14 9.35626969238e-14 1.02349369485e-13 0.978147625923 -0.207911685109 1.51779779608e-13 0.207911685109 0.978147625923 1.0 -1.40004354681e-13 2.11307767752e-14 12.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0
13 13.0 1 5 1 1 0.5 0.5 0.5 0.0601600304963 -0.10622742027 -0.166131272912 -0.159981891513 0.0047429674305 0.00654464075342 0.00742361694574 1.0 9.22255571608e-14 9.22255503845e-14 9.82438888813e-14 0.974370062351 -0.224951043725 1.5134031181e-13 0.224951043725 0.974370062351 1.0 -1.31394718782e-13 1.33769905892e-14 13.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0
14 14.0 1 5 1 1 0.5 0.5 0.5 0.0625560237246 -0.113614186645 -0.176321923733 -0.169804736972 0.00454916572198 0.00634495634586 0.00740135088563 1.0 9.09458597841e-14 9.09458530078e-14 9.42784397643e-14 0.970295727253 -0.241921886802 1.50916524286e-13 0.241921886802 0.970295727253 1.0 -1.23946358277e-13 6.88772167895e-15 14.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0
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85 85.0 1 5 1 1 0.5 0.5 0.5 0.0431223359335 0.143299892545 0.179094478488 0.182078793645 -0.0061384961009 -0.00779581116512 0.00746519910172 1.0 1.01173003352e-13 1.01172881379e-13 -1.24631763785e-13 0.0871557667851 -0.996194720268 1.53809826204e-13 0.996194720268 0.0871557667851 1.0 -2.64190067528e-14 -1.13333658864e-13 85.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0
86 86.0 1 5 1 1 0.5 0.5 0.5 0.0389558933784 0.130603894591 0.161492869258 0.163967981935 -0.00637407042086 -0.00797392893583 0.00748812500387 1.0 1.02893273058e-13 1.02893144309e-13 -1.29449253508e-13 0.069756500423 -0.997564077377 1.54404497543e-13 0.997564077377 0.069756500423 1.0 -2.58185688134e-14 -1.16454941393e-13 86.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0
87 87.0 1 5 1 1 0.5 0.5 0.5 0.0348200893229 0.117140188813 0.142814710736 0.144770666957 -0.00661494443193 -0.00814818497747 0.0075002736412 1.0 1.04684239521e-13 1.04684103996e-13 -1.34351825997e-13 0.0523359812796 -0.998629510403 1.5463373854e-13 0.998629510403 0.0523359812796 1.0 -2.50090916129e-14 -1.19682055607e-13 87.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0
88 88.0 1 5 1 1 0.5 0.5 0.5 0.0309165569603 0.102922193706 0.123093500733 0.124490439892 -0.00686429999769 -0.0083291567862 0.00751314265653 1.0 1.06547935622e-13 1.06547800097e-13 -1.39447996336e-13 0.0348995216191 -0.99939084053 1.54905873285e-13 0.99939084053 0.0348995216191 1.0 -2.41937732733e-14 -1.23072938559e-13 88.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0
89 89.0 1 5 1 1 0.5 0.5 0.5 0.0275482477894 0.0879731550813 0.102374792099 0.103184834123 -0.00712391687557 -0.00850248057395 0.00752882473171 1.0 1.08486421344e-13 1.08486279042e-13 -1.44796799334e-13 0.0174524337053 -0.999847710133 1.55297460004e-13 0.999847710133 0.0174524337053 1.0 -2.34091547958e-14 -1.26660902361e-13 89.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0
90 90.0 1 5 1 1 0.5 0.5 0.5 0.0251206236511 0.0723270624876 0.0806358680129 0.0808931067586 -0.00738708348945 -0.00866825506091 0.00754283368587 1.0 1.10501756671e-13 1.10501614369e-13 -1.50157664081e-13 2.67917759089e-08 -1.0 1.55653268052e-13 1.0 2.67920814423e-08 1.0 -2.25758302298e-14 -1.30329706988e-13 90.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0 31000000.0

View File

@ -1,3 +0,0 @@
1 header
inc elem node ip grain ip.x ip.y ip.z 1_1_p 1_2_p 1_3_p 1_4_p 1_5_p 1_6_p 1_7_p 1_8_p 1_9_p 1_1_div(p) 1_2_div(p) 1_3_div(p) 1_norm(div(p))
90 1 5 1 1 0.5 0.5 0.5 0.0723270624876 0.00754283322021 0.00738708395511 -0.00738708348945 -0.00866825319827 -0.0806358680129 0.00754283368587 0.0808931067586 0.00866825692356 0.000000 0.000000 0.000000 0.000000

View File

@ -3,25 +3,12 @@
#-------------------#
[direct]
mech none # isostrain 1 grain
mech none
thermal adiabatic # thermal strain (stress) induced mass transport
thermal adiabatic
t0 330.0
(output) temperature
#-------------------#
<crystallite>
#-------------------#
[aLittleSomething]
(output) texture
(output) f
(output) p
(output) fe
(output) fi
(output) fp
#-------------------#
<phase>
#-------------------#
@ -34,6 +21,12 @@ plasticity none
{config/elastic_isotropic.config}
{config/thermal.config}
(output) f
(output) p
(output) fe
(output) fi
(output) fp
#.................
[Ti matrix]
@ -43,6 +36,12 @@ plasticity none
{config/elastic_Ti.config}
{config/thermal.config}
(output) f
(output) p
(output) fe
(output) fi
(output) fp
#.................
[isotropic inclusion]
@ -52,6 +51,12 @@ plasticity none
{config/thermal.config}
{config/thermalExpansion_isotropic.config}
(output) f
(output) p
(output) fe
(output) fi
(output) fp
#.................
[anisotropic inclusion]
@ -61,6 +66,12 @@ plasticity none
{config/thermal.config}
{config/thermalExpansion_fullyAnisotropic.config}
(output) f
(output) p
(output) fe
(output) fi
(output) fp
#.................
[Ti inclusion]
@ -71,32 +82,32 @@ plasticity none
{config/thermal.config}
{config/thermalExpansion_Ti.config}
(output) f
(output) p
(output) fe
(output) fi
(output) fp
#--------------------------#
<microstructure>
#--------------------------#
[isotropic matrix]
crystallite 1
(constituent) phase 1 texture 1 fraction 1.0
[Ti matrix]
crystallite 1
(constituent) phase 2 texture 1 fraction 1.0
[isotropic inclusion]
crystallite 1
(constituent) phase 3 texture 1 fraction 1.0
[anisotropic inclusion]
crystallite 1
(constituent) phase 4 texture 1 fraction 1.0
[rotated inclusion]
crystallite 1
(constituent) phase 4 texture 2 fraction 1.0
[Ti inclusion]
crystallite 1
(constituent) phase 5 texture 1 fraction 1.0
#--------------------------#
@ -104,8 +115,8 @@ crystallite 1
#--------------------------#
[cube]
(gauss) phi1 0.0 Phi 0.0 phi2 0.0 scatter 0.0 fraction 1.0
(gauss) phi1 0.0 Phi 0.0 phi2 0.0
[rotated]
(gauss) phi1 0.0 Phi 45.0 phi2 0.0 scatter 0.0 fraction 1.0
(gauss) phi1 0.0 Phi 45.0 phi2 0.0

View File

@ -1,54 +0,0 @@
#!/usr/bin/env bash
for geom in $(ls geom/*.geom)
do
base=${geom%.geom}
base=${base#geom/}
name=${base}_thermal
vtr=${base}.vtr
[[ -f ${name}.spectralOut ]] || \
DAMASK_spectral \
--workingdir ./ \
--load thermal.load \
--geom $geom \
> ${name}.out
if [ ! -f postProc/${name}_inc10.txt ]
then
postResults ${name}.spectralOut \
--ho temperature \
--cr f,fe,fi,fp,p \
--split \
--separation x,y,z \
addCauchy postProc/${name}_inc*.txt \
addDeviator postProc/${name}_inc*.txt \
--spherical \
--tensor p,Cauchy \
addDisplacement postProc/${name}_inc*.txt \
--nodal \
fi
geom_check ${geom}
for inc in {00..10}
do
echo "generating postProc/${name}_inc${inc}.vtr"
cp geom/${vtr} postProc/${name}_inc${inc}.vtr
vtk_addRectilinearGridData \
postProc/${name}_inc${inc}.txt \
--vtk postProc/${name}_inc${inc}.vtr \
--data 'sph(p)','sph(Cauchy)',temperature \
--tensor f,fe,fi,fp,p,Cauchy \
vtk_addRectilinearGridData \
postProc/${name}_inc${inc}_nodal.txt \
--vtk postProc/${name}_inc${inc}.vtr \
--data 'avg(f).pos','fluct(f).pos' \
done
done

View File

@ -51,64 +51,44 @@ atol_resistance 1
<microstructure>
#-------------------#
[Grain01]
crystallite 1
(constituent) phase 1 texture 01 fraction 1.0
[Grain02]
crystallite 1
(constituent) phase 1 texture 02 fraction 1.0
[Grain03]
crystallite 1
(constituent) phase 1 texture 03 fraction 1.0
[Grain04]
crystallite 1
(constituent) phase 1 texture 04 fraction 1.0
[Grain05]
crystallite 1
(constituent) phase 1 texture 05 fraction 1.0
[Grain06]
crystallite 1
(constituent) phase 1 texture 06 fraction 1.0
[Grain07]
crystallite 1
(constituent) phase 1 texture 07 fraction 1.0
[Grain08]
crystallite 1
(constituent) phase 1 texture 08 fraction 1.0
[Grain09]
crystallite 1
(constituent) phase 1 texture 09 fraction 1.0
[Grain10]
crystallite 1
(constituent) phase 1 texture 10 fraction 1.0
[Grain11]
crystallite 1
(constituent) phase 1 texture 11 fraction 1.0
[Grain12]
crystallite 1
(constituent) phase 1 texture 12 fraction 1.0
[Grain13]
crystallite 1
(constituent) phase 1 texture 13 fraction 1.0
[Grain14]
crystallite 1
(constituent) phase 1 texture 14 fraction 1.0
[Grain15]
crystallite 1
(constituent) phase 1 texture 15 fraction 1.0
[Grain16]
crystallite 1
(constituent) phase 1 texture 16 fraction 1.0
[Grain17]
crystallite 1
(constituent) phase 1 texture 17 fraction 1.0
[Grain18]
crystallite 1
(constituent) phase 1 texture 18 fraction 1.0
[Grain19]
crystallite 1
(constituent) phase 1 texture 19 fraction 1.0
[Grain20]
crystallite 1
(constituent) phase 1 texture 20 fraction 1.0
@ -116,42 +96,42 @@ crystallite 1
<texture>
#-------------------#
[Grain01]
(gauss) phi1 0.0 Phi 0.0 phi2 0.0 scatter 0.0 fraction 1.0
(gauss) phi1 0.0 Phi 0.0 phi2 0.0
[Grain02]
(gauss) phi1 257.468172 Phi 53.250534 phi2 157.331503 scatter 0.0 fraction 1.0
(gauss) phi1 257.468172 Phi 53.250534 phi2 157.331503
[Grain03]
(gauss) phi1 216.994815 Phi 94.418518 phi2 251.147231 scatter 0.0 fraction 1.0
(gauss) phi1 216.994815 Phi 94.418518 phi2 251.147231
[Grain04]
(gauss) phi1 196.157946 Phi 55.870978 phi2 21.68117 scatter 0.0 fraction 1.0
(gauss) phi1 196.157946 Phi 55.870978 phi2 21.68117
[Grain05]
(gauss) phi1 152.515728 Phi 139.769395 phi2 240.036018 scatter 0.0 fraction 1.0
(gauss) phi1 152.515728 Phi 139.769395 phi2 240.036018
[Grain06]
(gauss) phi1 232.521881 Phi 73.749222 phi2 241.429633 scatter 0.0 fraction 1.0
(gauss) phi1 232.521881 Phi 73.749222 phi2 241.429633
[Grain07]
(gauss) phi1 157.531396 Phi 135.503513 phi2 75.737722 scatter 0.0 fraction 1.0
(gauss) phi1 157.531396 Phi 135.503513 phi2 75.737722
[Grain08]
(gauss) phi1 321.03828 Phi 27.209843 phi2 46.413467 scatter 0.0 fraction 1.0
(gauss) phi1 321.03828 Phi 27.209843 phi2 46.413467
[Grain09]
(gauss) phi1 346.918594 Phi 87.495569 phi2 113.554206 scatter 0.0 fraction 1.0
(gauss) phi1 346.918594 Phi 87.495569 phi2 113.554206
[Grain10]
(gauss) phi1 138.038947 Phi 99.827132 phi2 130.935878 scatter 0.0 fraction 1.0
(gauss) phi1 138.038947 Phi 99.827132 phi2 130.935878
[Grain11]
(gauss) phi1 285.021014 Phi 118.092004 phi2 205.270837 scatter 0.0 fraction 1.0
(gauss) phi1 285.021014 Phi 118.092004 phi2 205.270837
[Grain12]
(gauss) phi1 190.402171 Phi 56.738068 phi2 157.896545 scatter 0.0 fraction 1.0
(gauss) phi1 190.402171 Phi 56.738068 phi2 157.896545
[Grain13]
(gauss) phi1 204.496042 Phi 95.031265 phi2 355.814582 scatter 0.0 fraction 1.0
(gauss) phi1 204.496042 Phi 95.031265 phi2 355.814582
[Grain14]
(gauss) phi1 333.21479 Phi 82.133355 phi2 36.736132 scatter 0.0 fraction 1.0
(gauss) phi1 333.21479 Phi 82.133355 phi2 36.736132
[Grain15]
(gauss) phi1 25.572981 Phi 164.242648 phi2 75.195632 scatter 0.0 fraction 1.0
(gauss) phi1 25.572981 Phi 164.242648 phi2 75.195632
[Grain16]
(gauss) phi1 31.366548 Phi 76.392403 phi2 58.071426 scatter 0.0 fraction 1.0
(gauss) phi1 31.366548 Phi 76.392403 phi2 58.071426
[Grain17]
(gauss) phi1 7.278623 Phi 77.044663 phi2 235.118997 scatter 0.0 fraction 1.0
(gauss) phi1 7.278623 Phi 77.044663 phi2 235.118997
[Grain18]
(gauss) phi1 299.743144 Phi 76.475096 phi2 91.184977 scatter 0.0 fraction 1.0
(gauss) phi1 299.743144 Phi 76.475096 phi2 91.184977
[Grain19]
(gauss) phi1 280.13643 Phi 27.439718 phi2 167.871878 scatter 0.0 fraction 1.0
(gauss) phi1 280.13643 Phi 27.439718 phi2 167.871878
[Grain20]
(gauss) phi1 313.204373 Phi 68.676053 phi2 87.993213 scatter 0.0 fraction 1.0
(gauss) phi1 313.204373 Phi 68.676053 phi2 87.993213

View File

@ -9,14 +9,6 @@ cd DAMASK_ROOT
patch -p1 < installation/patch/nameOfPatch
```
## Available patches
* **disable_HDF5** disables all HDF5 output.
HDF5 output is an experimental feature. Also, some routines not present in HDF5 1.8.x are removed to allow compilation of DAMASK with HDF5 < 1.10.x
* **disable_old_output** disables all non-HDF5 output.
Saves some memory when using only HDF5 output
## Create patch
commit your changes

View File

@ -1,57 +0,0 @@
diff --git a/src/DAMASK_grid.f90 b/src/DAMASK_grid.f90
index 496bfd0d..7b0f499c 100644
--- a/src/DAMASK_grid.f90
+++ b/src/DAMASK_grid.f90
@@ -75,7 +75,6 @@ program DAMASK_spectral
use grid_mech_spectral_polarisation
use grid_damage_spectral
use grid_thermal_spectral
- use results
implicit none
@@ -153,8 +152,6 @@ program DAMASK_spectral
write(6,'(/,a)') ' Shanthraj et al., Handbook of Mechanics of Materials, 2019'
write(6,'(a)') ' https://doi.org/10.1007/978-981-10-6855-3_80'
- call results_openJobFile()
- call results_closeJobFile()
!--------------------------------------------------------------------------------------------------
! initialize field solver information
nActiveFields = 1
@@ -595,7 +592,6 @@ program DAMASK_spectral
if(ierr /=0_pInt) call IO_error(894_pInt, ext_msg='MPI_file_write')
enddo
fileOffset = fileOffset + sum(outputSize) ! forward to current file position
- call CPFEM_results(totalIncsCounter,time)
endif
if ( loadCases(currentLoadCase)%restartFrequency > 0_pInt & ! writing of restart info requested ...
.and. mod(inc,loadCases(currentLoadCase)%restartFrequency) == 0_pInt) then ! ... and at frequency of writing restart information
diff --git a/src/HDF5_utilities.f90 b/src/HDF5_utilities.f90
index a81aaee0..3d3cdee3 100644
--- a/src/HDF5_utilities.f90
+++ b/src/HDF5_utilities.f90
@@ -197,7 +197,6 @@ integer(HID_T) function HDF5_addGroup(fileHandle,groupName)
!-------------------------------------------------------------------------------------------------
! setting I/O mode to collective
#ifdef PETSc
- call h5pset_all_coll_metadata_ops_f(aplist_id, .true., hdferr)
if (hdferr < 0) call IO_error(1_pInt,ext_msg = 'HDF5_addGroup: h5pset_all_coll_metadata_ops_f ('//trim(groupName)//')')
#endif
@@ -232,7 +231,6 @@ integer(HID_T) function HDF5_openGroup(fileHandle,groupName)
!-------------------------------------------------------------------------------------------------
! setting I/O mode to collective
#ifdef PETSc
- call h5pget_all_coll_metadata_ops_f(aplist_id, is_collective, hdferr)
if (hdferr < 0) call IO_error(1_pInt,ext_msg = 'HDF5_openGroup: h5pset_all_coll_metadata_ops_f ('//trim(groupName)//')')
#endif
@@ -1646,7 +1644,6 @@ subroutine initialize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_
call h5pcreate_f(H5P_DATASET_ACCESS_F, aplist_id, hdferr)
if (hdferr < 0) call IO_error(1_pInt,ext_msg='initialize_read: h5pcreate_f')
#ifdef PETSc
- call h5pset_all_coll_metadata_ops_f(aplist_id, .true., hdferr)
if (hdferr < 0) call IO_error(1_pInt,ext_msg='initialize_read: h5pset_all_coll_metadata_ops_f')
#endif

View File

@ -1,178 +0,0 @@
From 6dbd904a4cfc28add3c39bb2a4ec9e2dbb2442b6 Mon Sep 17 00:00:00 2001
From: Martin Diehl <m.diehl@mpie.de>
Date: Thu, 18 Apr 2019 18:25:32 +0200
Subject: [PATCH] to create patch
---
src/DAMASK_grid.f90 | 81 +-----------------------------------------
src/homogenization.f90 | 2 ++
2 files changed, 3 insertions(+), 80 deletions(-)
diff --git a/src/DAMASK_grid.f90 b/src/DAMASK_grid.f90
index f2f52bb2..a7543f4d 100644
--- a/src/DAMASK_grid.f90
+++ b/src/DAMASK_grid.f90
@@ -18,7 +18,6 @@ program DAMASK_spectral
use DAMASK_interface, only: &
DAMASK_interface_init, &
loadCaseFile, &
- geometryFile, &
getSolverJobName, &
interface_restartInc
use IO, only: &
@@ -49,14 +48,9 @@ program DAMASK_spectral
restartInc
use numerics, only: &
worldrank, &
- worldsize, &
stagItMax, &
maxCutBack, &
continueCalculation
- use homogenization, only: &
- materialpoint_sizeResults, &
- materialpoint_results, &
- materialpoint_postResults
use material, only: &
thermal_type, &
damage_type, &
@@ -131,12 +125,6 @@ program DAMASK_spectral
type(tLoadCase), allocatable, dimension(:) :: loadCases !< array of all load cases
type(tLoadCase) :: newLoadCase
type(tSolutionState), allocatable, dimension(:) :: solres
- integer(MPI_OFFSET_KIND) :: fileOffset
- integer(MPI_OFFSET_KIND), dimension(:), allocatable :: outputSize
- integer(pInt), parameter :: maxByteOut = 2147483647-4096 !< limit of one file output write https://trac.mpich.org/projects/mpich/ticket/1742
- integer(pInt), parameter :: maxRealOut = maxByteOut/pReal
- integer(pLongInt), dimension(2) :: outputIndex
- PetscErrorCode :: ierr
procedure(grid_mech_spectral_basic_init), pointer :: &
mech_init
procedure(grid_mech_spectral_basic_forward), pointer :: &
@@ -384,22 +372,6 @@ program DAMASK_spectral
! write header of output file
if (worldrank == 0) then
writeHeader: if (interface_restartInc < 1_pInt) then
- open(newunit=fileUnit,file=trim(getSolverJobName())//&
- '.spectralOut',form='UNFORMATTED',status='REPLACE')
- write(fileUnit) 'load:', trim(loadCaseFile) ! ... and write header
- write(fileUnit) 'workingdir:', 'n/a'
- write(fileUnit) 'geometry:', trim(geometryFile)
- write(fileUnit) 'grid:', grid
- write(fileUnit) 'size:', geomSize
- write(fileUnit) 'materialpoint_sizeResults:', materialpoint_sizeResults
- write(fileUnit) 'loadcases:', size(loadCases)
- write(fileUnit) 'frequencies:', loadCases%outputfrequency ! one entry per LoadCase
- write(fileUnit) 'times:', loadCases%time ! one entry per LoadCase
- write(fileUnit) 'logscales:', loadCases%logscale
- write(fileUnit) 'increments:', loadCases%incs ! one entry per LoadCase
- write(fileUnit) 'startingIncrement:', restartInc ! start with writing out the previous inc
- write(fileUnit) 'eoh'
- close(fileUnit) ! end of header
open(newunit=statUnit,file=trim(getSolverJobName())//&
'.sta',form='FORMATTED',status='REPLACE')
write(statUnit,'(a)') 'Increment Time CutbackLevel Converged IterationsNeeded' ! statistics file
@@ -412,39 +384,6 @@ program DAMASK_spectral
endif writeHeader
endif
-!--------------------------------------------------------------------------------------------------
-! prepare MPI parallel out (including opening of file)
- allocate(outputSize(worldsize), source = 0_MPI_OFFSET_KIND)
- outputSize(worldrank+1) = size(materialpoint_results,kind=MPI_OFFSET_KIND)*int(pReal,MPI_OFFSET_KIND)
- call MPI_allreduce(MPI_IN_PLACE,outputSize,worldsize,MPI_LONG,MPI_SUM,PETSC_COMM_WORLD,ierr) ! get total output size over each process
- if (ierr /= 0_pInt) call IO_error(error_ID=894_pInt, ext_msg='MPI_allreduce')
- call MPI_file_open(PETSC_COMM_WORLD, trim(getSolverJobName())//'.spectralOut', &
- MPI_MODE_WRONLY + MPI_MODE_APPEND, &
- MPI_INFO_NULL, &
- fileUnit, &
- ierr)
- if (ierr /= 0_pInt) call IO_error(error_ID=894_pInt, ext_msg='MPI_file_open')
- call MPI_file_get_position(fileUnit,fileOffset,ierr) ! get offset from header
- if (ierr /= 0_pInt) call IO_error(error_ID=894_pInt, ext_msg='MPI_file_get_position')
- fileOffset = fileOffset + sum(outputSize(1:worldrank)) ! offset of my process in file (header + processes before me)
- call MPI_file_seek (fileUnit,fileOffset,MPI_SEEK_SET,ierr)
- if (ierr /= 0_pInt) call IO_error(error_ID=894_pInt, ext_msg='MPI_file_seek')
-
- writeUndeformed: if (interface_restartInc < 1_pInt) then
- write(6,'(1/,a)') ' ... writing initial configuration to file ........................'
- call CPFEM_results(0_pInt,0.0_pReal)
- do i = 1, size(materialpoint_results,3)/(maxByteOut/(materialpoint_sizeResults*pReal))+1 ! slice the output of my process in chunks not exceeding the limit for one output
- outputIndex = int([(i-1_pInt)*((maxRealOut)/materialpoint_sizeResults)+1_pInt, & ! QUESTION: why not starting i at 0 instead of murky 1?
- min(i*((maxRealOut)/materialpoint_sizeResults),size(materialpoint_results,3))],pLongInt)
- call MPI_file_write(fileUnit,reshape(materialpoint_results(:,:,outputIndex(1):outputIndex(2)), &
- [(outputIndex(2)-outputIndex(1)+1)*int(materialpoint_sizeResults,pLongInt)]), &
- int((outputIndex(2)-outputIndex(1)+1)*int(materialpoint_sizeResults,pLongInt)), &
- MPI_DOUBLE, MPI_STATUS_IGNORE, ierr)
- if (ierr /= 0_pInt) call IO_error(error_ID=894_pInt, ext_msg='MPI_file_write')
- enddo
- fileOffset = fileOffset + sum(outputSize) ! forward to current file position
- endif writeUndeformed
-
loadCaseLooping: do currentLoadCase = 1_pInt, size(loadCases)
time0 = time ! load case start time
@@ -574,7 +513,6 @@ program DAMASK_spectral
write(6,'(/,a)') ' cutting back '
else ! no more options to continue
call IO_warning(850_pInt)
- call MPI_file_close(fileUnit,ierr)
close(statUnit)
call quit(-1_pInt*(lastRestartWritten+1_pInt)) ! quit and provide information about last restart inc written
endif
@@ -593,24 +531,8 @@ program DAMASK_spectral
' increment ', totalIncsCounter, ' NOT converged'
endif; flush(6)
- if (mod(inc,loadCases(currentLoadCase)%outputFrequency) == 0_pInt) then ! at output frequency
- write(6,'(1/,a)') ' ... writing results to file ......................................'
- flush(6)
- call materialpoint_postResults()
- call MPI_file_seek (fileUnit,fileOffset,MPI_SEEK_SET,ierr)
- if (ierr /= 0_pInt) call IO_error(894_pInt, ext_msg='MPI_file_seek')
- do i=1, size(materialpoint_results,3)/(maxByteOut/(materialpoint_sizeResults*pReal))+1 ! slice the output of my process in chunks not exceeding the limit for one output
- outputIndex=int([(i-1_pInt)*((maxRealOut)/materialpoint_sizeResults)+1_pInt, &
- min(i*((maxRealOut)/materialpoint_sizeResults),size(materialpoint_results,3))],pLongInt)
- call MPI_file_write(fileUnit,reshape(materialpoint_results(:,:,outputIndex(1):outputIndex(2)),&
- [(outputIndex(2)-outputIndex(1)+1)*int(materialpoint_sizeResults,pLongInt)]), &
- int((outputIndex(2)-outputIndex(1)+1)*int(materialpoint_sizeResults,pLongInt)),&
- MPI_DOUBLE, MPI_STATUS_IGNORE, ierr)
- if(ierr /=0_pInt) call IO_error(894_pInt, ext_msg='MPI_file_write')
- enddo
- fileOffset = fileOffset + sum(outputSize) ! forward to current file position
+ if (mod(inc,loadCases(currentLoadCase)%outputFrequency) == 0_pInt) & ! at output frequency
call CPFEM_results(totalIncsCounter,time)
- endif
if ( loadCases(currentLoadCase)%restartFrequency > 0_pInt & ! writing of restart info requested ...
.and. mod(inc,loadCases(currentLoadCase)%restartFrequency) == 0_pInt) then ! ... and at frequency of writing restart information
restartWrite = .true. ! set restart parameter for FEsolving
@@ -633,7 +555,6 @@ program DAMASK_spectral
real(convergedCounter, pReal)/&
real(notConvergedCounter + convergedCounter,pReal)*100.0_pReal, ' %) increments converged!'
flush(6)
- call MPI_file_close(fileUnit,ierr)
close(statUnit)
if (notConvergedCounter > 0_pInt) call quit(2_pInt) ! error if some are not converged
diff --git a/src/homogenization.f90 b/src/homogenization.f90
index 06da6ab2..0743d545 100644
--- a/src/homogenization.f90
+++ b/src/homogenization.f90
@@ -269,6 +269,7 @@ subroutine homogenization_init
+ homogenization_maxNgrains * (1 + crystallite_maxSizePostResults & ! crystallite size & crystallite results
+ 1 + constitutive_plasticity_maxSizePostResults & ! constitutive size & constitutive results
+ constitutive_source_maxSizePostResults)
+ materialpoint_sizeResults = 0
allocate(materialpoint_results(materialpoint_sizeResults,theMesh%elem%nIPs,theMesh%nElems))
write(6,'(/,a)') ' <<<+- homogenization init -+>>>'
@@ -682,6 +683,7 @@ subroutine materialpoint_postResults
i, & !< integration point number
e !< element number
+ return
!$OMP PARALLEL DO PRIVATE(myNgrains,myCrystallite,thePos,theSize)
elementLooping: do e = FEsolving_execElem(1),FEsolving_execElem(2)
myNgrains = homogenization_Ngrains(mesh_element(3,e))
--
2.21.0

View File

@ -1,8 +0,0 @@
#! /usr/bin/env bash
if [ $1x != 3to2x ]; then
echo 'python2.7 to python3'
find . -name '*.py' -type f | xargs sed -i 's/usr\/bin\/env python2.7/usr\/bin\/env python3/g'
else
echo 'python3 to python2.7'
find . -name '*.py' -type f | xargs sed -i 's/usr\/bin\/env python3/usr\/bin\/env python2.7/g'
fi

View File

@ -2,6 +2,7 @@
import os
import sys
from io import StringIO
from optparse import OptionParser
import numpy as np
@ -24,61 +25,33 @@ Transform X,Y,Z,F APS BeamLine 34 coordinates to x,y,z APS strain coordinates.
parser.add_option('-f','--frame',dest='frame', metavar='string',
help='label of APS X,Y,Z coords')
parser.add_option('--depth', dest='depth', metavar='string',
parser.add_option('--depth', dest='depth', metavar='string',
help='depth')
(options,filenames) = parser.parse_args()
if filenames == []: filenames = [None]
if options.frame is None:
parser.error('frame not specified')
if options.depth is None:
parser.error('depth not specified')
# --- loop over input files ------------------------------------------------------------------------
if filenames == []: filenames = [None]
theta=-0.75*np.pi
RotMat2TSL=np.array([[1., 0., 0.],
[0., np.cos(theta), np.sin(theta)], # Orientation to account for -135 deg
[0., -np.sin(theta), np.cos(theta)]]) # rotation for TSL convention
for name in filenames:
try: table = damask.ASCIItable(name = name,
buffered = False)
except: continue
damask.util.report(scriptName,name)
damask.util.report(scriptName,name)
# ------------------------------------------ read header ------------------------------------------
table = damask.Table.from_ASCII(StringIO(''.join(sys.stdin.read())) if name is None else name)
coord = - table.get(options.frame)
coord[:,2] += table.get(options.depth)[:,0]
table.head_read()
table.add('coord',
np.einsum('ijk,ik->ij',np.broadcast_to(RotMat2TSL,(coord.shape[0],3,3)),coord),
scriptID+' '+' '.join(sys.argv[1:]))
# ------------------------------------------ sanity checks -----------------------------------------
errors = []
if table.label_dimension(options.frame) != 3:
errors.append('input {} does not have dimension 3.'.format(options.frame))
if table.label_dimension(options.depth) != 1:
errors.append('input {} does not have dimension 1.'.format(options.depth))
if errors != []:
damask.util.croak(errors)
table.close(dismiss = True)
continue
table.info_append(scriptID + '\t' + ' '.join(sys.argv[1:]))
# ------------------------------------------ assemble header ---------------------------------------
table.labels_append(['%i_coord'%(i+1) for i in range(3)]) # extend ASCII header with new labels
table.head_write()
# ------------------------------------------ process data ------------------------------------------
theta=-0.75*np.pi
RotMat2TSL=np.array([[1., 0., 0.],
[0., np.cos(theta), np.sin(theta)], # Orientation to account for -135 deg
[0., -np.sin(theta), np.cos(theta)]]) # rotation for TSL convention
outputAlive = True
while outputAlive and table.data_read(): # read next data line of ASCII table
coord = list(map(float,table.data[table.label_index(options.frame):table.label_index(options.frame)+3]))
depth = float(table.data[table.label_index(options.depth)])
table.data_append(np.dot(RotMat2TSL,np.array([-coord[0],-coord[1],-coord[2]+depth])))
outputAlive = table.data_write() # output processed line
# ------------------------------------------ output finalization -----------------------------------
table.close() # close ASCII tables
table.to_ASCII(sys.stdout if name is None else name)

View File

@ -176,7 +176,7 @@ for name in filenames:
damask.util.report(scriptName,name)
table = damask.Table.from_ASCII(StringIO(''.join(sys.stdin.read())) if name is None else name)
grid,size,origin = damask.grid_filters.cell_coord0_2_DNA(table.get(options.pos))
grid,size,origin = damask.grid_filters.cell_coord0_gridSizeOrigin(table.get(options.pos))
F = table.get(options.defgrad).reshape(grid[2],grid[1],grid[0],3,3)
nodes = damask.grid_filters.node_coord(size,F)

View File

@ -44,7 +44,7 @@ for name in filenames:
damask.util.report(scriptName,name)
table = damask.Table.from_ASCII(StringIO(''.join(sys.stdin.read())) if name is None else name)
grid,size,origin = damask.grid_filters.cell_coord0_2_DNA(table.get(options.pos))
grid,size,origin = damask.grid_filters.cell_coord0_gridSizeOrigin(table.get(options.pos))
for label in options.labels:
field = table.get(label)

View File

@ -50,7 +50,7 @@ for name in filenames:
damask.util.report(scriptName,name)
table = damask.Table.from_ASCII(StringIO(''.join(sys.stdin.read())) if name is None else name)
grid,size,origin = damask.grid_filters.cell_coord0_2_DNA(table.get(options.pos))
grid,size,origin = damask.grid_filters.cell_coord0_gridSizeOrigin(table.get(options.pos))
F = table.get(options.f).reshape(np.append(grid[::-1],(3,3)))
if options.nodal:

View File

@ -44,7 +44,7 @@ for name in filenames:
damask.util.report(scriptName,name)
table = damask.Table.from_ASCII(StringIO(''.join(sys.stdin.read())) if name is None else name)
grid,size,origin = damask.grid_filters.cell_coord0_2_DNA(table.get(options.pos))
grid,size,origin = damask.grid_filters.cell_coord0_gridSizeOrigin(table.get(options.pos))
for label in options.labels:
field = table.get(label)

View File

@ -143,7 +143,7 @@ for name in filenames:
damask.util.report(scriptName,name)
table = damask.Table.from_ASCII(StringIO(''.join(sys.stdin.read())) if name is None else name)
grid,size,origin = damask.grid_filters.cell_coord0_2_DNA(table.get(options.pos))
grid,size,origin = damask.grid_filters.cell_coord0_gridSizeOrigin(table.get(options.pos))
neighborhood = neighborhoods[options.neighborhood]
diffToNeighbor = np.empty(list(grid+2)+[len(neighborhood)],'i')

View File

@ -44,7 +44,7 @@ for name in filenames:
damask.util.report(scriptName,name)
table = damask.Table.from_ASCII(StringIO(''.join(sys.stdin.read())) if name is None else name)
grid,size,origin = damask.grid_filters.cell_coord0_2_DNA(table.get(options.pos))
grid,size,origin = damask.grid_filters.cell_coord0_gridSizeOrigin(table.get(options.pos))
for label in options.labels:
field = table.get(label)

View File

@ -2,25 +2,24 @@
import os
import sys
from io import StringIO
from optparse import OptionParser
import numpy as np
import damask
scriptName = os.path.splitext(os.path.basename(__file__))[0]
scriptID = ' '.join([scriptName,damask.version])
def operator(stretch,strain,eigenvalues):
def parameters(stretch,strain):
"""Albrecht Bertram: Elasticity and Plasticity of Large Deformations An Introduction (3rd Edition, 2012), p. 102."""
return {
'V#ln': np.log(eigenvalues) ,
'U#ln': np.log(eigenvalues) ,
'V#Biot': ( np.ones(3,'d') - 1.0/eigenvalues ) ,
'U#Biot': ( eigenvalues - np.ones(3,'d') ) ,
'V#Green': ( np.ones(3,'d') - 1.0/eigenvalues/eigenvalues) *0.5,
'U#Green': ( eigenvalues*eigenvalues - np.ones(3,'d')) *0.5,
'V#ln': ('V',0.0),
'U#ln': ('U',0.0),
'V#Biot': ('V',-.5),
'U#Biot': ('U',+.5),
'V#Green': ('V',-1.),
'U#Green': ('U',+1.),
}[stretch+'#'+strain]
@ -64,9 +63,10 @@ parser.set_defaults(
)
(options,filenames) = parser.parse_args()
if filenames == []: filenames = [None]
if len(options.defgrad) > 1:
options.defgrad = options.defgrad[1:]
options.defgrad = options.defgrad[1:]
stretches = []
strains = []
@ -78,84 +78,21 @@ if options.biot: strains.append('Biot')
if options.green: strains.append('Green')
if options.defgrad is None:
parser.error('no data column specified.')
# --- loop over input files -------------------------------------------------------------------------
if filenames == []: filenames = [None]
parser.error('no data column specified.')
for name in filenames:
try:
table = damask.ASCIItable(name = name,
buffered = False)
except IOError: continue
damask.util.report(scriptName,name)
damask.util.report(scriptName,name)
table = damask.Table.from_ASCII(StringIO(''.join(sys.stdin.read())) if name is None else name)
# ------------------------------------------ read header ------------------------------------------
table.head_read()
# ------------------------------------------ sanity checks ----------------------------------------
items = {
'tensor': {'dim': 9, 'shape': [3,3], 'labels':options.defgrad, 'column': []},
}
errors = []
remarks = []
for type, data in items.items():
for what in data['labels']:
dim = table.label_dimension(what)
if dim != data['dim']: remarks.append('column {} is not a {}...'.format(what,type))
else:
items[type]['column'].append(table.label_index(what))
for defgrad in options.defgrad:
F = table.get(defgrad).reshape((-1,3,3))
for theStretch in stretches:
for theStrain in strains:
table.labels_append(['{}_{}({}){}'.format(i+1, # extend ASCII header with new labels
theStrain,
theStretch,
what if what != 'f' else '') for i in range(9)])
for theStrain in strains:
(t,m) = parameters(theStretch,theStrain)
label = '{}({}){}'.format(theStrain,theStretch,defgrad if defgrad != 'f' else '')
table.add(label,
damask.mechanics.strain_tensor(F,t,m).reshape((-1,9)),
scriptID+' '+' '.join(sys.argv[1:]))
if remarks != []: damask.util.croak(remarks)
if errors != []:
damask.util.croak(errors)
table.close(dismiss = True)
continue
# ------------------------------------------ assemble header --------------------------------------
table.info_append(scriptID + '\t' + ' '.join(sys.argv[1:]))
table.head_write()
# ------------------------------------------ process data ------------------------------------------
stretch = {}
outputAlive = True
while outputAlive and table.data_read(): # read next data line of ASCII table
for column in items['tensor']['column']: # loop over all requested defgrads
F = np.array(list(map(float,table.data[column:column+items['tensor']['dim']])),'d').reshape(items['tensor']['shape'])
(U,S,Vh) = np.linalg.svd(F) # singular value decomposition
R_inv = np.dot(U,Vh).T # rotation of polar decomposition
stretch['U'] = np.dot(R_inv,F) # F = RU
stretch['V'] = np.dot(F,R_inv) # F = VR
for theStretch in stretches:
stretch[theStretch] = np.where(abs(stretch[theStretch]) < 1e-12, 0, stretch[theStretch]) # kill nasty noisy data
(D,V) = np.linalg.eigh((stretch[theStretch]+stretch[theStretch].T)*0.5) # eigen decomposition (of symmetric(ed) matrix)
neg = np.where(D < 0.0) # find negative eigenvalues ...
D[neg] *= -1. # ... flip value ...
V[:,neg] *= -1. # ... and vector
for theStrain in strains:
d = operator(theStretch,theStrain,D) # operate on eigenvalues of U or V
eps = np.dot(V,np.dot(np.diag(d),V.T)).reshape(9) # build tensor back from eigenvalue/vector basis
table.data_append(list(eps))
# ------------------------------------------ output result -----------------------------------------
outputAlive = table.data_write() # output processed line
# ------------------------------------------ output finalization -----------------------------------
table.close() # close ASCII tables
table.to_ASCII(sys.stdout if name is None else name)

View File

@ -2,6 +2,7 @@
import os
import sys
from io import StringIO
from optparse import OptionParser
import damask
@ -25,56 +26,19 @@ parser.add_option('-a', '--add','--table',
help = 'tables to add')
(options,filenames) = parser.parse_args()
if options.table is None:
parser.error('no table specified.')
# --- loop over input files -------------------------------------------------------------------------
if filenames == []: filenames = [None]
if options.table is None:
parser.error('no table specified.')
for name in filenames:
try: table = damask.ASCIItable(name = name,
buffered = False)
except: continue
damask.util.report(scriptName,name)
damask.util.report(scriptName,name)
table = damask.Table.from_ASCII(StringIO(''.join(sys.stdin.read())) if name is None else name)
tables = []
for addTable in options.table:
try: tables.append(damask.ASCIItable(name = addTable,
buffered = False,
readonly = True)
)
except: continue
for addTable in options.table:
table2 = damask.Table.from_ASCII(addTable)
table2.data = table2.data[:table.data.shape[0]]
table.join(table2)
# ------------------------------------------ read headers ------------------------------------------
table.head_read()
for addTable in tables: addTable.head_read()
# ------------------------------------------ assemble header --------------------------------------
table.info_append(scriptID + '\t' + ' '.join(sys.argv[1:]))
for addTable in tables: table.labels_append(addTable.labels(raw = True)) # extend ASCII header with new labels
table.head_write()
# ------------------------------------------ process data ------------------------------------------
outputAlive = True
while outputAlive and table.data_read():
for addTable in tables:
outputAlive = addTable.data_read() # read next table's data
if not outputAlive: break
table.data_append(addTable.data) # append to master table
if outputAlive:
outputAlive = table.data_write() # output processed line
# ------------------------------------------ output finalization -----------------------------------
table.close() # close ASCII tables
for addTable in tables:
addTable.close()
table.to_ASCII(sys.stdout if name is None else name)

View File

@ -2,6 +2,7 @@
import os
import sys
from io import StringIO
from optparse import OptionParser
import numpy as np
@ -49,6 +50,7 @@ parser.set_defaults(pos = 'pos',
)
(options,filenames) = parser.parse_args()
if filenames == []: filenames = [None]
packing = np.array(options.packing,dtype = int)
shift = np.array(options.shift, dtype = int)
@ -56,47 +58,14 @@ shift = np.array(options.shift, dtype = int)
prefix = 'averagedDown{}x{}x{}_'.format(*packing)
if any(shift != 0): prefix += 'shift{:+}{:+}{:+}_'.format(*shift)
# --- loop over input files ------------------------------------------------------------------------
if filenames == []: filenames = [None]
for name in filenames:
try: table = damask.ASCIItable(name = name,
outname = os.path.join(os.path.dirname(name),
prefix+os.path.basename(name)) if name else name,
buffered = False)
except IOError:
continue
damask.util.report(scriptName,name)
# ------------------------------------------ read header ------------------------------------------
table.head_read()
# ------------------------------------------ sanity checks ----------------------------------------
errors = []
remarks = []
if table.label_dimension(options.pos) != 3: errors.append('coordinates {} are not a vector.'.format(options.pos))
if remarks != []: damask.util.croak(remarks)
if errors != []:
damask.util.croak(errors)
table.close(dismiss = True)
continue
# ------------------------------------------ assemble header ---------------------------------------
table.info_append(scriptID + '\t' + ' '.join(sys.argv[1:]))
table.head_write()
# --------------- figure out size and grid ---------------------------------------------------------
table.data_readArray()
table = damask.Table.from_ASCII(StringIO(''.join(sys.stdin.read())) if name is None else name)
if (options.grid is None or options.size is None):
grid,size,origin = damask.grid_filters.cell_coord0_2_DNA(table.data[:,table.label_indexrange(options.pos)])
grid,size,origin = damask.grid_filters.cell_coord0_gridSizeOrigin(table.get(options.pos))
else:
grid = np.array(options.grid,'i')
size = np.array(options.size,'d')
@ -105,37 +74,25 @@ for name in filenames:
shift = np.where(grid == 1,0,shift) # reset shift to 0 where grid==1
packedGrid = np.maximum(np.ones(3,'i'),grid//packing)
data = table.data.values.reshape(tuple(grid)+(-1,),order = 'F')
averagedDown = scipy.ndimage.filters.uniform_filter( \
np.roll(
np.roll(
np.roll(table.data.reshape(list(grid)+[table.data.shape[1]],order = 'F'),
np.roll(data,
-shift[0],axis = 0),
-shift[1],axis = 1),
-shift[2],axis = 2),
size = list(packing) + [1],
mode = 'wrap',
origin = list(-(packing//2)) + [0])\
[::packing[0],::packing[1],::packing[2],:].reshape((packedGrid.prod(),table.data.shape[1]),order = 'F')
[::packing[0],::packing[1],::packing[2],:].reshape((packedGrid.prod(),-1),order = 'F')
table.data = averagedDown
table = damask.Table(averagedDown,table.shapes,table.comments)
#--- generate grid --------------------------------------------------------------------------------
coords = damask.grid_filters.cell_coord0(packedGrid,size,shift/packedGrid*size+origin)
table.set(options.pos, coords.reshape((-1,3)))
x = (0.5 + shift[0] + np.arange(packedGrid[0],dtype=float))/packedGrid[0]*size[0]
y = (0.5 + shift[1] + np.arange(packedGrid[1],dtype=float))/packedGrid[1]*size[1]
z = (0.5 + shift[2] + np.arange(packedGrid[2],dtype=float))/packedGrid[2]*size[2]
xx = np.tile( x, packedGrid[1]* packedGrid[2])
yy = np.tile(np.repeat(y,packedGrid[0] ),packedGrid[2])
zz = np.repeat(z,packedGrid[0]*packedGrid[1])
table.data[:,table.label_indexrange(options.pos)] = np.squeeze(np.dstack((xx,yy,zz)))
# ------------------------------------------ output result -----------------------------------------
table.data_writeArray()
# ------------------------------------------ output finalization -----------------------------------
table.close() # close ASCII tables
outname = os.path.join(os.path.dirname(name),prefix+os.path.basename(name))
table.to_ASCII(sys.stdout if name is None else outname)

View File

@ -2,8 +2,10 @@
import os
import sys
from io import StringIO
from optparse import OptionParser
from scipy import ndimage
import numpy as np
import damask
@ -42,82 +44,29 @@ parser.set_defaults(pos = 'pos',
)
(options,filenames) = parser.parse_args()
if filenames == []: filenames = [None]
options.packing = np.array(options.packing)
prefix = 'blowUp{}x{}x{}_'.format(*options.packing)
# --- loop over input files -------------------------------------------------------------------------
if filenames == []: filenames = [None]
for name in filenames:
try: table = damask.ASCIItable(name = name,
outname = os.path.join(os.path.dirname(name),
prefix+os.path.basename(name)) if name else name,
buffered = False)
except IOError:
continue
damask.util.report(scriptName,name)
# ------------------------------------------ read header ------------------------------------------
table.head_read()
# ------------------------------------------ sanity checks ----------------------------------------
errors = []
remarks = []
if table.label_dimension(options.pos) != 3: errors.append('coordinates "{}" are not a vector.'.format(options.pos))
colElem = table.label_index('elem')
if remarks != []: damask.util.croak(remarks)
if errors != []:
damask.util.croak(errors)
table.close(dismiss = True)
continue
# --------------- figure out size and grid ---------------------------------------------------------
table.data_readArray(options.pos)
table.data_rewind()
grid,size,origin = damask.grid_filters.cell_coord0_2_DNA(table.data)
table = damask.Table.from_ASCII(StringIO(''.join(sys.stdin.read())) if name is None else name)
grid,size,origin = damask.grid_filters.cell_coord0_gridSizeOrigin(table.get(options.pos))
packing = np.array(options.packing,'i')
outSize = grid*packing
# ------------------------------------------ assemble header --------------------------------------
data = table.data.values.reshape(tuple(grid)+(-1,))
blownUp = ndimage.interpolation.zoom(data,tuple(packing)+(1,),order=0,mode='nearest').reshape((outSize.prod(),-1))
table.info_append(scriptID + '\t' + ' '.join(sys.argv[1:]))
table.head_write()
table = damask.Table(blownUp,table.shapes,table.comments)
# ------------------------------------------ process data -------------------------------------------
data = np.zeros(outSize.tolist()+[len(table.labels(raw = True))])
p = np.zeros(3,'i')
coords = damask.grid_filters.cell_coord0(outSize,size,origin)
table.set(options.pos,coords.reshape((-1,3)))
table.set('elem',np.arange(1,outSize.prod()+1))
for p[2] in range(grid[2]):
for p[1] in range(grid[1]):
for p[0] in range(grid[0]):
d = p*packing
table.data_read()
data[d[0]:d[0]+packing[0],
d[1]:d[1]+packing[1],
d[2]:d[2]+packing[2],
: ] = np.tile(np.array(table.data_asFloat(),'d'),packing.tolist()+[1]) # tile to match blowUp voxel size
elementSize = size/grid/packing
elem = 1
for c in range(outSize[2]):
for b in range(outSize[1]):
for a in range(outSize[0]):
data[a,b,c,table.label_indexrange(options.pos)] = [a+0.5,b+0.5,c+0.5]*elementSize
if colElem != -1: data[a,b,c,colElem] = elem
table.data = data[a,b,c,:].tolist()
outputAlive = table.data_write() # output processed line
elem += 1
# ------------------------------------------ output finalization -----------------------------------
table.close() # close input ASCII table (works for stdin)
outname = os.path.join(os.path.dirname(name),prefix+os.path.basename(name))
table.to_ASCII(sys.stdout if name is None else outname)

View File

@ -2,10 +2,9 @@
import os
import sys
from io import StringIO
from optparse import OptionParser
import numpy as np
import damask
scriptName = os.path.splitext(os.path.basename(__file__))[0]
@ -27,53 +26,18 @@ parser.add_option('-a', '--add','--table',
help = 'tables to add')
(options,filenames) = parser.parse_args()
if options.table is None:
parser.error('no table specified.')
# --- loop over input files -------------------------------------------------------------------------
if filenames == []: filenames = [None]
if options.table is None:
parser.error('no table specified.')
for name in filenames:
try: table = damask.ASCIItable(name = name,
buffered = False)
except: continue
damask.util.report(scriptName,name)
damask.util.report(scriptName,name)
table = damask.Table.from_ASCII(StringIO(''.join(sys.stdin.read())) if name is None else name)
tables = []
for addTable in options.table:
try: tables.append(damask.ASCIItable(name = addTable,
buffered = False,
readonly = True)
)
except: continue
for growTable in options.table:
table2 = damask.Table.from_ASCII(growTable)
table.append(table2)
# ------------------------------------------ read headers ------------------------------------------
table.head_read()
for addTable in tables: addTable.head_read()
# ------------------------------------------ assemble header --------------------------------------
table.info_append(scriptID + '\t' + ' '.join(sys.argv[1:]))
table.head_write()
# ------------------------------------------ process data ------------------------------------------
table.data_readArray()
data = table.data
for addTable in tables:
addTable.data_readArray(table.labels(raw = True))
data = np.vstack((data,addTable.data))
table.data = data
table.data_writeArray()
# ------------------------------------------ output finalization -----------------------------------
table.close() # close ASCII tables
for addTable in tables:
addTable.close()
table.to_ASCII(sys.stdout if name is None else name)

View File

@ -1,8 +1,9 @@
#!/usr/bin/env python3
import os
import sys
from io import StringIO
from optparse import OptionParser
from collections import defaultdict
import vtk
from vtk.util import numpy_support
@ -18,11 +19,10 @@ scriptID = ' '.join([scriptName,damask.version])
# MAIN
# --------------------------------------------------------------------
msg = "Add scalars, vectors, and/or an RGB tuple from"
msg += "an ASCIItable to existing VTK grid (.vtr/.vtk/.vtu)."
parser = OptionParser(option_class=damask.extendableOption,
usage='%prog options [ASCIItable(s)]',
description = msg,
description = "Add scalars, vectors, tensors, and/or an RGB tuple from ASCIItable "
+ "to existing VTK grid (.vtr/.vtk/.vtu).",
version = scriptID)
parser.add_option( '--vtk',
@ -49,10 +49,10 @@ parser.add_option('-c', '--color',
parser.set_defaults(data = [],
tensor = [],
color = [],
render = False,
)
(options, filenames) = parser.parse_args()
if filenames == []: filenames = [None]
if not options.vtk: parser.error('No VTK file specified.')
if not os.path.exists(options.vtk): parser.error('VTK file does not exist.')
@ -87,65 +87,28 @@ Ncells = rGrid.GetNumberOfCells()
damask.util.croak('{}: {} points and {} cells...'.format(options.vtk,Npoints,Ncells))
# --- loop over input files -------------------------------------------------------------------------
if filenames == []: filenames = [None]
for name in filenames:
try: table = damask.ASCIItable(name = name,
buffered = False,
readonly = True)
except: continue
damask.util.report(scriptName, name)
damask.util.report(scriptName,name)
# --- interpret header ----------------------------------------------------------------------------
table.head_read()
remarks = []
errors = []
table = damask.Table.from_ASCII(StringIO(''.join(sys.stdin.read())) if name is None else name)
VTKarray = {}
active = defaultdict(list)
for data in options.data:
VTKarray[data] = numpy_support.numpy_to_vtk(table.get(data).copy(),
deep=True,array_type=vtk.VTK_DOUBLE)
VTKarray[data].SetName(data)
for color in options.color:
VTKarray[color] = numpy_support.numpy_to_vtk((table.get(color)*255).astype(int).copy(),
deep=True,array_type=vtk.VTK_UNSIGNED_CHAR)
VTKarray[color].SetName(color)
for datatype,dimension,label in [['data',99,options.data],
['tensor',9,options.tensor],
['color' ,3,options.color],
]:
for i,dim in enumerate(table.label_dimension(label)):
me = label[i]
if dim == -1: remarks.append('{} "{}" not found...'.format(datatype,me))
elif dim > dimension: remarks.append('"{}" not of dimension {}...'.format(me,dimension))
else:
remarks.append('adding {} "{}"...'.format(datatype,me))
active[datatype].append(me)
for tensor in options.tensor:
data = damask.mechanics.symmetric(table.get(tensor).reshape((-1,3,3))).reshape((-1,9))
VTKarray[tensor] = numpy_support.numpy_to_vtk(data.copy(),
deep=True,array_type=vtk.VTK_DOUBLE)
VTKarray[tensor].SetName(tensor)
if remarks != []: damask.util.croak(remarks)
if errors != []:
damask.util.croak(errors)
table.close(dismiss = True)
continue
# ------------------------------------------ process data ---------------------------------------
table.data_readArray([item for sublist in active.values() for item in sublist]) # read all requested data
for datatype,labels in active.items(): # loop over scalar,color
for me in labels: # loop over all requested items
VTKtype = vtk.VTK_DOUBLE
VTKdata = table.data[:, table.label_indexrange(me)].copy() # copy to force contiguous layout
if datatype == 'color':
VTKtype = vtk.VTK_UNSIGNED_CHAR
VTKdata = (VTKdata*255).astype(int) # translate to 0..255 UCHAR
elif datatype == 'tensor':
VTKdata[:,1] = VTKdata[:,3] = 0.5*(VTKdata[:,1]+VTKdata[:,3])
VTKdata[:,2] = VTKdata[:,6] = 0.5*(VTKdata[:,2]+VTKdata[:,6])
VTKdata[:,5] = VTKdata[:,7] = 0.5*(VTKdata[:,5]+VTKdata[:,7])
VTKarray[me] = numpy_support.numpy_to_vtk(num_array=VTKdata,deep=True,array_type=VTKtype)
VTKarray[me].SetName(me)
table.close() # close input ASCII table
# ------------------------------------------ add data ---------------------------------------
@ -157,16 +120,10 @@ for name in filenames:
damask.util.croak('{} mode...'.format(mode))
for datatype,labels in active.items(): # loop over scalar,color
if datatype == 'color':
if mode == 'cell': rGrid.GetCellData().SetScalars(VTKarray[active['color'][0]])
elif mode == 'point': rGrid.GetPointData().SetScalars(VTKarray[active['color'][0]])
for me in labels: # loop over all requested items
if mode == 'cell': rGrid.GetCellData().AddArray(VTKarray[me])
elif mode == 'point': rGrid.GetPointData().AddArray(VTKarray[me])
for data in VTKarray:
if mode == 'cell': rGrid.GetCellData().AddArray(VTKarray[data])
elif mode == 'point': rGrid.GetPointData().AddArray(VTKarray[data])
rGrid.Modified()
if vtk.VTK_MAJOR_VERSION <= 5: rGrid.Update()
# ------------------------------------------ output result ---------------------------------------
@ -184,7 +141,7 @@ if options.render:
actor.SetMapper(mapper)
# Create the graphics structure. The renderer renders into the
# render window. The render window interactor captures mouse events
# render window. The render window interactively captures mouse events
# and will perform appropriate camera or actor manipulation
# depending on the nature of the events.

View File

@ -1,8 +1,9 @@
#!/usr/bin/env python3
import os
import sys
from io import StringIO
from optparse import OptionParser
from collections import defaultdict
import vtk
from vtk.util import numpy_support
@ -20,7 +21,8 @@ scriptID = ' '.join([scriptName,damask.version])
parser = OptionParser(option_class=damask.extendableOption,
usage='%prog options [ASCIItable(s)]',
description = """Add scalar and RGB tuples from ASCIItable to existing VTK point cloud (.vtp).""",
description = "Add scalars, vectors, tensors, and/or an RGB tuple from ASCIItable "
+ "VTK point cloud (.vtp).",
version = scriptID)
parser.add_option( '--vtk',
@ -39,9 +41,10 @@ parser.add_option('-t', '--tensor',
dest = 'tensor',
action = 'extend', metavar = '<string LIST>',
help = 'tensor (3x3) value label(s)')
parser.add_option('-c', '--color', dest='color', action='extend',
metavar ='<string LIST>',
help = 'RGB color tuples')
parser.add_option('-c', '--color',
dest = 'color',
action = 'extend', metavar = '<string LIST>',
help = 'RGB color tuple label')
parser.set_defaults(data = [],
tensor = [],
@ -49,8 +52,9 @@ parser.set_defaults(data = [],
)
(options, filenames) = parser.parse_args()
if filenames == []: filenames = [None]
if not options.vtk: parser.error('no VTK file specified.')
if not options.vtk: parser.error('No VTK file specified.')
if not os.path.exists(options.vtk): parser.error('VTK file does not exist.')
vtk_file,vtk_ext = os.path.splitext(options.vtk)
@ -77,81 +81,35 @@ if Npoints != Ncells or Npoints != Nvertices:
damask.util.croak('{}: {} points/vertices/cells...'.format(options.vtk,Npoints))
# --- loop over input files -------------------------------------------------------------------------
if filenames == []: filenames = [None]
for name in filenames:
try: table = damask.ASCIItable(name = name,
buffered = False,
readonly = True)
except: continue
damask.util.report(scriptName, name)
damask.util.report(scriptName,name)
# --- interpret header ----------------------------------------------------------------------------
table.head_read()
remarks = []
errors = []
table = damask.Table.from_ASCII(StringIO(''.join(sys.stdin.read())) if name is None else name)
VTKarray = {}
active = defaultdict(list)
for data in options.data:
VTKarray[data] = numpy_support.numpy_to_vtk(table.get(data).copy(),
deep=True,array_type=vtk.VTK_DOUBLE)
VTKarray[data].SetName(data)
for color in options.color:
VTKarray[color] = numpy_support.numpy_to_vtk((table.get(color)*255).astype(int).copy(),
deep=True,array_type=vtk.VTK_UNSIGNED_CHAR)
VTKarray[color].SetName(color)
for datatype,dimension,label in [['data',0,options.data],
['tensor',9,options.tensor],
['color' ,3,options.color],
]:
for i,dim in enumerate(table.label_dimension(label)):
me = label[i]
if dim == -1: remarks.append('{} "{}" not found...'.format(datatype,me))
elif dimension > 0 \
and dim != dimension: remarks.append('"{}" not of dimension {}...'.format(me,dimension))
else:
remarks.append('adding {}{} "{}"...'.format(datatype if dim > 1 else 'scalar',
'' if dimension > 0 or dim == 1 else '[{}]'.format(dim),
me))
active[datatype].append(me)
if remarks != []: damask.util.croak(remarks)
if errors != []:
damask.util.croak(errors)
table.close(dismiss = True)
continue
# --------------------------------------- process and add data -----------------------------------
table.data_readArray([item for sublist in active.values() for item in sublist]) # read all requested data
for datatype,labels in active.items(): # loop over scalar,color
for me in labels: # loop over all requested items
VTKtype = vtk.VTK_DOUBLE
VTKdata = table.data[:, table.label_indexrange(me)].copy() # copy to force contiguous layout
if datatype == 'color':
VTKtype = vtk.VTK_UNSIGNED_CHAR
VTKdata = (VTKdata*255).astype(int) # translate to 0..255 UCHAR
elif datatype == 'tensor':
VTKdata[:,1] = VTKdata[:,3] = 0.5*(VTKdata[:,1]+VTKdata[:,3])
VTKdata[:,2] = VTKdata[:,6] = 0.5*(VTKdata[:,2]+VTKdata[:,6])
VTKdata[:,5] = VTKdata[:,7] = 0.5*(VTKdata[:,5]+VTKdata[:,7])
VTKarray[me] = numpy_support.numpy_to_vtk(num_array=VTKdata,deep=True,array_type=VTKtype)
VTKarray[me].SetName(me)
if datatype == 'color':
Polydata.GetPointData().SetScalars(VTKarray[me])
Polydata.GetCellData().SetScalars(VTKarray[me])
else:
Polydata.GetPointData().AddArray(VTKarray[me])
Polydata.GetCellData().AddArray(VTKarray[me])
for tensor in options.tensor:
data = damask.mechanics.symmetric(table.get(tensor).reshape((-1,3,3))).reshape((-1,9))
VTKarray[tensor] = numpy_support.numpy_to_vtk(data.copy(),
deep=True,array_type=vtk.VTK_DOUBLE)
VTKarray[tensor].SetName(tensor)
table.input_close() # close input ASCII table
for data in VTKarray:
Polydata.GetPointData().AddArray(VTKarray[data])
Polydata.Modified()
# ------------------------------------------ output result ---------------------------------------
Polydata.Modified()
writer = vtk.vtkXMLPolyDataWriter()
writer.SetDataModeToBinary()
writer.SetCompressorTypeToZLib()

View File

@ -1,199 +0,0 @@
#!/usr/bin/env python3
import os
from optparse import OptionParser
from collections import defaultdict
import vtk
from vtk.util import numpy_support
import damask
scriptName = os.path.splitext(os.path.basename(__file__))[0]
scriptID = ' '.join([scriptName,damask.version])
# --------------------------------------------------------------------
# MAIN
# --------------------------------------------------------------------
msg = "Add scalars, vectors, and/or an RGB tuple from"
msg += "an ASCIItable to existing VTK rectilinear grid (.vtr/.vtk)."
parser = OptionParser(option_class=damask.extendableOption,
usage='%prog options [file[s]]',
description = msg,
version = scriptID)
parser.add_option( '--vtk',
dest = 'vtk',
type = 'string', metavar = 'string',
help = 'VTK file name')
parser.add_option('-r', '--render',
dest = 'render',
action = 'store_true',
help = 'open output in VTK render window')
parser.add_option('-d', '--data',
dest = 'data',
action = 'extend', metavar = '<string LIST>',
help = 'scalar/vector value(s) label(s)')
parser.add_option('-t', '--tensor',
dest = 'tensor',
action = 'extend', metavar = '<string LIST>',
help = 'tensor (3x3) value label(s)')
parser.add_option('-c', '--color',
dest = 'color',
action = 'extend', metavar = '<string LIST>',
help = 'RGB color tuple label')
parser.set_defaults(data = [],
tensor = [],
color = [],
render = False,
)
(options, filenames) = parser.parse_args()
if not options.vtk: parser.error('no VTK file specified.')
if not os.path.exists(options.vtk): parser.error('VTK file does not exist.')
vtk_file,vtk_ext = os.path.splitext(options.vtk)
if vtk_ext == '.vtr':
reader = vtk.vtkXMLRectilinearGridReader()
reader.SetFileName(options.vtk)
reader.Update()
rGrid = reader.GetOutput()
elif vtk_ext == '.vtk':
reader = vtk.vtkGenericDataObjectReader()
reader.SetFileName(options.vtk)
reader.Update()
rGrid = reader.GetRectilinearGridOutput()
else:
parser.error('unsupported VTK file type extension.')
Npoints = rGrid.GetNumberOfPoints()
Ncells = rGrid.GetNumberOfCells()
damask.util.croak('{}: {} points and {} cells...'.format(options.vtk,Npoints,Ncells))
# --- loop over input files -------------------------------------------------------------------------
if filenames == []: filenames = [None]
for name in filenames:
try: table = damask.ASCIItable(name = name,
buffered = False,
readonly = True)
except: continue
damask.util.report(scriptName, name)
# --- interpret header ----------------------------------------------------------------------------
table.head_read()
remarks = []
errors = []
VTKarray = {}
active = defaultdict(list)
for datatype,dimension,label in [['data',0,options.data],
['tensor',9,options.tensor],
['color' ,3,options.color],
]:
for i,dim in enumerate(table.label_dimension(label)):
me = label[i]
if dim == -1: remarks.append('{} "{}" not found...'.format(datatype,me))
elif dimension > 0 \
and dim != dimension: remarks.append('"{}" not of dimension {}...'.format(me,dimension))
else:
remarks.append('adding {}{} "{}"...'.format(datatype if dim > 1 else 'scalar',
'' if dimension > 0 or dim == 1 else '[{}]'.format(dim),
me))
active[datatype].append(me)
if remarks != []: damask.util.croak(remarks)
if errors != []:
damask.util.croak(errors)
table.close(dismiss = True)
continue
# ------------------------------------------ process data ---------------------------------------
table.data_readArray([item for sublist in active.values() for item in sublist]) # read all requested data
for datatype,labels in active.items(): # loop over scalar,color
for me in labels: # loop over all requested items
VTKtype = vtk.VTK_DOUBLE
VTKdata = table.data[:, table.label_indexrange(me)].copy() # copy to force contiguous layout
if datatype == 'color':
VTKtype = vtk.VTK_UNSIGNED_CHAR
VTKdata = (VTKdata*255).astype(int) # translate to 0..255 UCHAR
elif datatype == 'tensor':
VTKdata[:,1] = VTKdata[:,3] = 0.5*(VTKdata[:,1]+VTKdata[:,3])
VTKdata[:,2] = VTKdata[:,6] = 0.5*(VTKdata[:,2]+VTKdata[:,6])
VTKdata[:,5] = VTKdata[:,7] = 0.5*(VTKdata[:,5]+VTKdata[:,7])
VTKarray[me] = numpy_support.numpy_to_vtk(num_array=VTKdata,deep=True,array_type=VTKtype)
VTKarray[me].SetName(me)
table.close() # close input ASCII table
# ------------------------------------------ add data ---------------------------------------
if len(table.data) == Npoints: mode = 'point'
elif len(table.data) == Ncells: mode = 'cell'
else:
damask.util.croak('data count is incompatible with grid...')
continue
damask.util.croak('{} mode...'.format(mode))
for datatype,labels in active.items(): # loop over scalar,color
if datatype == 'color':
if mode == 'cell': rGrid.GetCellData().SetScalars(VTKarray[active['color'][0]])
elif mode == 'point': rGrid.GetPointData().SetScalars(VTKarray[active['color'][0]])
for me in labels: # loop over all requested items
if mode == 'cell': rGrid.GetCellData().AddArray(VTKarray[me])
elif mode == 'point': rGrid.GetPointData().AddArray(VTKarray[me])
rGrid.Modified()
# ------------------------------------------ output result ---------------------------------------
writer = vtk.vtkXMLRectilinearGridWriter()
writer.SetDataModeToBinary()
writer.SetCompressorTypeToZLib()
writer.SetFileName(vtk_file+'.'+writer.GetDefaultFileExtension())
writer.SetInputData(rGrid)
writer.Write()
# ------------------------------------------ render result ---------------------------------------
if options.render:
mapper = vtk.vtkDataSetMapper()
mapper.SetInputData(rGrid)
actor = vtk.vtkActor()
actor.SetMapper(mapper)
# Create the graphics structure. The renderer renders into the
# render window. The render window interactor captures mouse events
# and will perform appropriate camera or actor manipulation
# depending on the nature of the events.
ren = vtk.vtkRenderer()
renWin = vtk.vtkRenderWindow()
renWin.AddRenderer(ren)
ren.AddActor(actor)
ren.SetBackground(1, 1, 1)
renWin.SetSize(200, 200)
iren = vtk.vtkRenderWindowInteractor()
iren.SetRenderWindow(renWin)
iren.Initialize()
renWin.Render()
iren.Start()

View File

@ -86,7 +86,7 @@ for name in filenames:
if options.phase is None:
table.data = np.column_stack((table.data,np.ones(len(table.data)))) # add single phase if no phase column given
grid,size,origin = damask.grid_filters.cell_coord0_2_DNA(table.data[:,0:3])
grid,size,origin = damask.grid_filters.cell_coord0_gridSizeOrigin(table.data[:,0:3])
indices = np.lexsort((table.data[:,0],table.data[:,1],table.data[:,2])) # indices of position when sorting x fast, z slow
microstructure = np.empty(grid,dtype = int) # initialize empty microstructure

View File

@ -30,7 +30,7 @@ for name in filenames:
geom = damask.Geom.from_file(StringIO(''.join(sys.stdin.read())) if name is None else name)
damask.util.croak(geom)
coord0 = damask.grid_filters.cell_coord0(geom.grid,geom.size,geom.origin).reshape((-1,3),order='F')
coord0 = damask.grid_filters.cell_coord0(geom.grid,geom.size,geom.origin).reshape((-1,3))
comments = geom.comments \
+ [scriptID + ' ' + ' '.join(sys.argv[1:]),
@ -40,7 +40,7 @@ for name in filenames:
"homogenization\t{}".format(geom.homogenization)]
table = damask.Table(coord0,{'pos':(3,)},comments)
table.add('microstructure',geom.microstructure.reshape((-1,1)))
table.add('microstructure',geom.microstructure.reshape((-1,1),order='F'))
table.to_ASCII(sys.stdout if name is None else \
os.path.splitext(name)[0]+'.txt')

View File

@ -1,5 +1,3 @@
import math
import numpy as np
class Color():
@ -328,11 +326,11 @@ class Color():
if self.model != 'CIELAB': return
Msh = np.zeros(3,'d')
Msh[0] = math.sqrt(np.dot(self.color,self.color))
Msh[0] = np.sqrt(np.dot(self.color,self.color))
if (Msh[0] > 0.001):
Msh[1] = math.acos(self.color[0]/Msh[0])
Msh[1] = np.arccos(self.color[0]/Msh[0])
if (self.color[1] != 0.0):
Msh[2] = math.atan2(self.color[2],self.color[1])
Msh[2] = np.arctan2(self.color[2],self.color[1])
converted = Color('MSH', Msh)
self.model = converted.model
@ -349,9 +347,9 @@ class Color():
if self.model != 'MSH': return
Lab = np.zeros(3,'d')
Lab[0] = self.color[0] * math.cos(self.color[1])
Lab[1] = self.color[0] * math.sin(self.color[1]) * math.cos(self.color[2])
Lab[2] = self.color[0] * math.sin(self.color[1]) * math.sin(self.color[2])
Lab[0] = self.color[0] * np.cos(self.color[1])
Lab[1] = self.color[0] * np.sin(self.color[1]) * np.cos(self.color[2])
Lab[2] = self.color[0] * np.sin(self.color[1]) * np.sin(self.color[2])
converted = Color('CIELAB', Lab)
self.model = converted.model
@ -476,14 +474,14 @@ class Colormap():
if Msh_sat[0] >= Msh_unsat[0]:
return Msh_sat[2]
else:
hSpin = Msh_sat[1]/math.sin(Msh_sat[1])*math.sqrt(Msh_unsat[0]**2.0-Msh_sat[0]**2)/Msh_sat[0]
if Msh_sat[2] < - math.pi/3.0: hSpin *= -1.0
hSpin = Msh_sat[1]/np.sin(Msh_sat[1])*np.sqrt(Msh_unsat[0]**2.0-Msh_sat[0]**2)/Msh_sat[0]
if Msh_sat[2] < - np.pi/3.0: hSpin *= -1.0
return Msh_sat[2] + hSpin
Msh1 = np.array(lo[:])
Msh2 = np.array(hi[:])
if (Msh1[1] > 0.05 and Msh2[1] > 0.05 and rad_diff(Msh1,Msh2) > math.pi/3.0):
if (Msh1[1] > 0.05 and Msh2[1] > 0.05 and rad_diff(Msh1,Msh2) > np.pi/3.0):
M_mid = max(Msh1[0],Msh2[0],88.0)
if frac < 0.5:
Msh2 = np.array([M_mid,0.0,0.0],'d')

View File

@ -102,7 +102,7 @@ class DADF5():
elif datasets is False:
datasets = []
choice = [datasets] if isinstance(datasets,str) else datasets
valid = [e for e_ in [glob.fnmatch.filter(getattr(self,what),s) for s in choice] for e in e_]
existing = set(self.visible[what])
@ -339,8 +339,8 @@ class DADF5():
"""Return information on all active datasets in the file."""
message = ''
with h5py.File(self.fname,'r') as f:
for s,i in enumerate(self.iter_visible('increments')):
message+='\n{} ({}s)\n'.format(i,self.times[s])
for i in self.iter_visible('increments'):
message+='\n{} ({}s)\n'.format(i,self.times[self.increments.index(i)])
for o,p in zip(['constituents','materialpoints'],['con_physics','mat_physics']):
for oo in self.iter_visible(o):
message+=' {}\n'.format(oo)
@ -855,7 +855,7 @@ class DADF5():
Parameters
----------
labels : list of str
labels : str or list of
Labels of the datasets to be exported.
mode : str, either 'Cell' or 'Point'
Export in cell format or point format.
@ -880,7 +880,7 @@ class DADF5():
else:
nodes = vtk.vtkPoints()
with h5py.File(self.fname) as f:
with h5py.File(self.fname,'r') as f:
nodes.SetData(numpy_support.numpy_to_vtk(f['/geometry/x_n'][()],deep=True))
vtk_geom = vtk.vtkUnstructuredGrid()
@ -908,7 +908,7 @@ class DADF5():
materialpoints_backup = self.visible['materialpoints'].copy()
self.set_visible('materialpoints',False)
for label in labels:
for label in (labels if isinstance(labels,list) else [labels]):
for p in self.iter_visible('con_physics'):
if p != 'generic':
for c in self.iter_visible('constituents'):
@ -939,7 +939,7 @@ class DADF5():
constituents_backup = self.visible['constituents'].copy()
self.set_visible('constituents',False)
for label in labels:
for label in (labels if isinstance(labels,list) else [labels]):
for p in self.iter_visible('mat_physics'):
if p != 'generic':
for m in self.iter_visible('materialpoints'):

View File

@ -422,7 +422,7 @@ class Geom():
ext = os.path.splitext(fname)[1]
if ext == '':
name = fname + '.' + writer.GetDefaultFileExtension()
elif ext == writer.GetDefaultFileExtension():
elif ext[1:] == writer.GetDefaultFileExtension():
name = fname
else:
raise ValueError("unknown extension {}".format(ext))

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@ -181,7 +181,7 @@ def cell_coord(size,F,origin=np.zeros(3)):
"""
return cell_coord0(F.shape[:3][::-1],size,origin) + cell_displacement(size,F)
def cell_coord0_2_DNA(coord0,ordered=True):
def cell_coord0_gridSizeOrigin(coord0,ordered=True):
"""
Return grid 'DNA', i.e. grid, size, and origin from array of cell positions.
@ -200,6 +200,10 @@ def cell_coord0_2_DNA(coord0,ordered=True):
size = grid/np.maximum(grid-1,1) * (maxcorner-mincorner)
delta = size/grid
origin = mincorner - delta*.5
# 1D/2D: size/origin combination undefined, set origin to 0.0
size [np.where(grid==1)] = origin[np.where(grid==1)]*2.
origin[np.where(grid==1)] = 0.0
if grid.prod() != len(coord0):
raise ValueError('Data count {} does not match grid {}.'.format(len(coord0),grid))
@ -227,7 +231,7 @@ def coord0_check(coord0):
array of undeformed cell coordinates.
"""
cell_coord0_2_DNA(coord0,ordered=True)
cell_coord0_gridSizeOrigin(coord0,ordered=True)
@ -327,7 +331,7 @@ def node_2_cell(node_data):
return c[:-1,:-1,:-1]
def node_coord0_2_DNA(coord0,ordered=False):
def node_coord0_gridSizeOrigin(coord0,ordered=False):
"""
Return grid 'DNA', i.e. grid, size, and origin from array of nodal positions.

View File

@ -58,10 +58,10 @@ def strain_tensor(F,t,m):
"""
F_ = F.reshape((1,3,3)) if F.shape == (3,3) else F
if t == 'U':
if t == 'V':
B = np.matmul(F_,transpose(F_))
w,n = np.linalg.eigh(B)
elif t == 'V':
elif t == 'U':
C = np.matmul(transpose(F_),F_)
w,n = np.linalg.eigh(C)
@ -92,21 +92,27 @@ def deviatoric_part(x):
x - np.einsum('ijk,i->ijk',np.broadcast_to(np.eye(3),[x.shape[0],3,3]),spherical_part(x))
def spherical_part(x):
def spherical_part(x,tensor=False):
"""
Return spherical (hydrostatic) part of a tensor.
A single scalar is returned, i.e. the hydrostatic part is not mapped on the 3rd order identity
matrix.
Parameters
----------
x : numpy.array of shape (:,3,3) or (3,3)
Tensor of which the hydrostatic part is computed.
tensor : bool, optional
Map spherical part onto identity tensor. Default is false
"""
return np.trace(x)/3.0 if np.shape(x) == (3,3) else \
np.trace(x,axis1=1,axis2=2)/3.0
if x.shape == (3,3):
sph = np.trace(x)/3.0
return sph if not tensor else np.eye(3)*sph
else:
sph = np.trace(x,axis1=1,axis2=2)/3.0
if not tensor:
return sph
else:
return np.einsum('ijk,i->ijk',np.broadcast_to(np.eye(3),(x.shape[0],3,3)),sph)
def Mises_stress(sigma):

View File

@ -22,7 +22,7 @@ class Table():
Additional, human-readable information.
"""
self.comments = ['table.py v {}'.format(version)] if not comments else [c for c in comments]
self.comments = [] if comments is None else [c for c in comments]
self.data = pd.DataFrame(data=data)
self.shapes = shapes
self.__label_condensed()
@ -77,10 +77,9 @@ class Table():
if keyword == 'header':
header = int(header)
else:
raise Exception
comments = ['table.py:from_ASCII v {}'.format(version)]
comments+= [f.readline()[:-1] for i in range(1,header)]
raise TypeError
comments = [f.readline()[:-1] for i in range(1,header)]
labels = f.readline().split()
shapes = {}
@ -138,9 +137,12 @@ class Table():
break
data = np.loadtxt(content)
for c in range(data.shape[1]-10):
shapes['n/a_{}'.format(c+1)] = (1,)
return Table(data,shapes,comments)
@property
def labels(self):
return list(self.shapes.keys())
@ -248,17 +250,17 @@ class Table():
'' if info is None else ': {}'.format(info),
))
self.shapes = {(label if label is not label_old else label_new):self.shapes[label] for label in self.shapes}
self.shapes = {(label if label != label_old else label_new):self.shapes[label] for label in self.shapes}
def sort_by(self,labels,ascending=True):
"""
Get column data.
Sort table by values of given labels.
Parameters
----------
label : str or list
Column labels.
Column labels for sorting.
ascending : bool or list, optional
Set sort order.
@ -269,6 +271,44 @@ class Table():
self.comments.append('sorted by [{}]'.format(', '.join(labels)))
def append(self,other):
"""
Append other table vertically (similar to numpy.vstack).
Requires matching labels/shapes and order.
Parameters
----------
other : Table
Table to append
"""
if self.shapes != other.shapes or not self.data.columns.equals(other.data.columns):
raise KeyError('Labels or shapes or order do not match')
else:
self.data = self.data.append(other.data,ignore_index=True)
def join(self,other):
"""
Append other table horizontally (similar to numpy.hstack).
Requires matching number of rows and no common labels.
Parameters
----------
other : Table
Table to join
"""
if set(self.shapes) & set(other.shapes) or self.data.shape[0] != other.data.shape[0]:
raise KeyError('Dublicated keys or row count mismatch')
else:
self.data = self.data.join(other.data)
for key in other.shapes:
self.shapes[key] = other.shapes[key]
def to_ASCII(self,fname):
"""
Store as plain text file.

View File

@ -45,17 +45,17 @@ class TestRotation:
def test_Homochoric(self,default):
for rot in default:
assert np.allclose(rot.asRodrigues(),
Rotation.fromHomochoric(rot.asHomochoric()).asRodrigues())
Rotation.fromHomochoric(rot.asHomochoric()).asRodrigues(),rtol=5.e-5)
def test_Cubochoric(self,default):
for rot in default:
assert np.allclose(rot.asHomochoric(),
Rotation.fromCubochoric(rot.asCubochoric()).asHomochoric())
Rotation.fromCubochoric(rot.asCubochoric()).asHomochoric(),rtol=5.e-5)
def test_Quaternion(self,default):
for rot in default:
assert np.allclose(rot.asCubochoric(),
Rotation.fromQuaternion(rot.asQuaternion()).asCubochoric())
Rotation.fromQuaternion(rot.asQuaternion()).asCubochoric(),rtol=5.e-5)
@pytest.mark.parametrize('model',['Bain','KS','GT','GT_prime','NW','Pitsch'])

View File

@ -86,14 +86,42 @@ class TestTable:
def test_rename_gone(self,default):
default.rename('v','V')
assert 'v' not in default.shapes and 'v' not in default.data.columns
with pytest.raises(KeyError):
default.get('v')
def test_delete(self,default):
default.delete('v')
assert 'v' not in default.shapes and 'v' not in default.data.columns
with pytest.raises(KeyError):
default.get('v')
def test_join(self):
x = np.random.random((5,13))
a = Table(x,{'F':(3,3),'v':(3,),'s':(1,)},['random test data'])
y = np.random.random((5,3))
b = Table(y,{'u':(3,)},['random test data'])
a.join(b)
assert np.array_equal(a.get('u'), b.get('u'))
def test_join_invalid(self):
x = np.random.random((5,13))
a = Table(x,{'F':(3,3),'v':(3,),'s':(1,)},['random test data'])
with pytest.raises(KeyError):
a.join(a)
def test_append(self):
x = np.random.random((5,13))
a = Table(x,{'F':(3,3),'v':(3,),'s':(1,)},['random test data'])
a.append(a)
assert np.array_equal(a.data[:5].to_numpy(),a.data[5:].to_numpy())
def test_append_invalid(self):
x = np.random.random((5,13))
a = Table(x,{'F':(3,3),'v':(3,),'s':(1,)},['random test data'])
b = Table(x,{'F':(3,3),'u':(3,),'s':(1,)},['random test data'])
with pytest.raises(KeyError):
a.append(b)
def test_invalid_initialization(self):
x = np.random.random((5,10))

View File

@ -26,12 +26,12 @@ class TestGridFilters:
@pytest.mark.parametrize('mode',[('cell'),('node')])
def test_grid_DNA(self,mode):
"""Ensure that xx_coord0_2_DNA is the inverse of xx_coord0."""
"""Ensure that xx_coord0_gridSizeOrigin is the inverse of xx_coord0."""
grid = np.random.randint(8,32,(3))
size = np.random.random(3)
origin = np.random.random(3)
coord0 = eval('grid_filters.{}_coord0(grid,size,origin)'.format(mode)) # noqa
_grid,_size,_origin = eval('grid_filters.{}_coord0_2_DNA(coord0.reshape((-1,3)))'.format(mode))
_grid,_size,_origin = eval('grid_filters.{}_coord0_gridSizeOrigin(coord0.reshape((-1,3)))'.format(mode))
assert np.allclose(grid,_grid) and np.allclose(size,_size) and np.allclose(origin,_origin)
def test_displacement_fluct_equivalence(self):

View File

@ -30,8 +30,8 @@ class TestMechanics:
def test_vectorize_spherical_part(self):
x = np.random.random((self.n,3,3))
assert np.allclose(mechanics.spherical_part(x)[self.c],
mechanics.spherical_part(x[self.c]))
assert np.allclose(mechanics.spherical_part(x,True)[self.c],
mechanics.spherical_part(x[self.c],True))
def test_vectorize_Mises_stress(self):
@ -94,6 +94,15 @@ class TestMechanics:
assert np.allclose(mechanics.Cauchy(np.broadcast_to(np.eye(3),(self.n,3,3)),P),
mechanics.symmetric(P))
def test_polar_decomposition(self):
"""F = RU = VR."""
F = np.broadcast_to(np.eye(3),[self.n,3,3])*np.random.random((self.n,3,3))
R = mechanics.rotational_part(F)
V = mechanics.left_stretch(F)
U = mechanics.right_stretch(F)
assert np.allclose(np.matmul(R,U),
np.matmul(V,R))
def test_strain_tensor_no_rotation(self):
"""Ensure that left and right stretch give same results for no rotation."""
@ -102,6 +111,12 @@ class TestMechanics:
assert np.allclose(mechanics.strain_tensor(F,'U',m),
mechanics.strain_tensor(F,'V',m))
def test_strain_tensor_rotation_equivalence(self):
"""Ensure that left and right strain differ only by a rotation."""
F = np.broadcast_to(np.eye(3),[self.n,3,3]) + (np.random.random((self.n,3,3))*0.5 - 0.25)
m = np.random.random()*5.0-2.5
assert np.allclose(np.linalg.det(mechanics.strain_tensor(F,'U',m)),
np.linalg.det(mechanics.strain_tensor(F,'V',m)))
def test_strain_tensor_rotation(self):
"""Ensure that pure rotation results in no strain."""
@ -111,15 +126,46 @@ class TestMechanics:
assert np.allclose(mechanics.strain_tensor(F,t,m),
0.0)
def test_rotation_determinant(self):
"""
Ensure that the determinant of the rotational part is +- 1.
Should be +1, but random F might contain a reflection.
"""
x = np.random.random((self.n,3,3))
assert np.allclose(np.abs(np.linalg.det(mechanics.rotational_part(x))),
1.0)
def test_spherical_deviatoric_part(self):
"""Ensure that full tensor is sum of spherical and deviatoric part."""
x = np.random.random((self.n,3,3))
sph = np.broadcast_to(np.eye(3),(self.n,3,3))\
* np.repeat(mechanics.spherical_part(x),9).reshape(self.n,3,3)
sph = mechanics.spherical_part(x,True)
assert np.allclose(sph + mechanics.deviatoric_part(x),
x)
def test_deviatoric_Mises(self):
"""Ensure that Mises equivalent stress depends only on deviatoric part."""
x = np.random.random((self.n,3,3))
full = mechanics.Mises_stress(x)
dev = mechanics.Mises_stress(mechanics.deviatoric_part(x))
assert np.allclose(full,
dev)
def test_spherical_mapping(self):
"""Ensure that mapping to tensor is correct."""
x = np.random.random((self.n,3,3))
tensor = mechanics.spherical_part(x,True)
scalar = mechanics.spherical_part(x)
assert np.allclose(np.linalg.det(tensor),
scalar**3.0)
def test_spherical_Mises(self):
"""Ensure that Mises equivalent strrain of spherical strain is 0."""
x = np.random.random((self.n,3,3))
sph = mechanics.spherical_part(x,True)
assert np.allclose(mechanics.Mises_strain(sph),
0.0)
def test_symmetric(self):
"""Ensure that a symmetric tensor is half of the sum of a tensor and its transpose."""

View File

@ -377,7 +377,7 @@ subroutine CPFEM_results(inc,time)
call constitutive_results
call crystallite_results
call homogenization_results
call results_removeLink('current') ! ToDo: put this into closeJobFile
call results_finalizeIncrement
call results_closeJobFile
end subroutine CPFEM_results

View File

@ -17,7 +17,6 @@ module CPFEM2
use DAMASK_interface
use results
use discretization
use HDF5
use HDF5_utilities
use homogenization
use constitutive
@ -202,7 +201,7 @@ subroutine CPFEM_results(inc,time)
call crystallite_results
call homogenization_results
call discretization_results
call results_removeLink('current') ! ToDo: put this into closeJobFile?
call results_finalizeIncrement
call results_closeJobFile
end subroutine CPFEM_results

View File

@ -10,7 +10,7 @@
!> and working directory.
!--------------------------------------------------------------------------------------------------
#define GCC_MIN 6
#define INTEL_MIN 1600
#define INTEL_MIN 1700
#define PETSC_MAJOR 3
#define PETSC_MINOR_MIN 10
#define PETSC_MINOR_MAX 12
@ -269,10 +269,10 @@ subroutine DAMASK_interface_init
write(6,'(a,a)') ' Working dir argument: ', trim(workingDirArg)
write(6,'(a,a)') ' Geometry argument: ', trim(geometryArg)
write(6,'(a,a)') ' Load case argument: ', trim(loadcaseArg)
write(6,'(a,a)') ' Working directory: ', trim(getCWD())
write(6,'(a,a)') ' Working directory: ', getCWD()
write(6,'(a,a)') ' Geometry file: ', trim(geometryFile)
write(6,'(a,a)') ' Loadcase file: ', trim(loadCaseFile)
write(6,'(a,a)') ' Solver job name: ', trim(getSolverJobName())
write(6,'(a,a)') ' Solver job name: ', getSolverJobName()
if (interface_restartInc > 0) &
write(6,'(a,i6.6)') ' Restart from increment: ', interface_restartInc
@ -308,7 +308,7 @@ subroutine setWorkingDirectory(workingDirectoryArg)
workingDirectory = trim(rectifyPath(workingDirectory))
error = setCWD(trim(workingDirectory))
if(error) then
write(6,'(/,a)') ' ERROR: Working directory "'//trim(workingDirectory)//'" does not exist'
write(6,'(/,a)') ' ERROR: Invalid Working directory: '//trim(workingDirectory)
call quit(1)
endif
@ -318,8 +318,9 @@ end subroutine setWorkingDirectory
!--------------------------------------------------------------------------------------------------
!> @brief solver job name (no extension) as combination of geometry and load case name
!--------------------------------------------------------------------------------------------------
character(len=1024) function getSolverJobName()
function getSolverJobName()
character(len=:), allocatable :: getSolverJobName
integer :: posExt,posSep
posExt = scan(geometryFile,'.',back=.true.)
@ -330,7 +331,7 @@ character(len=1024) function getSolverJobName()
posExt = scan(loadCaseFile,'.',back=.true.)
posSep = scan(loadCaseFile,'/',back=.true.)
getSolverJobName = trim(getSolverJobName)//'_'//loadCaseFile(posSep+1:posExt-1)
getSolverJobName = getSolverJobName//'_'//loadCaseFile(posSep+1:posExt-1)
end function getSolverJobName
@ -338,15 +339,16 @@ end function getSolverJobName
!--------------------------------------------------------------------------------------------------
!> @brief basename of geometry file with extension from command line arguments
!--------------------------------------------------------------------------------------------------
character(len=1024) function getGeometryFile(geometryParameter)
function getGeometryFile(geometryParameter)
character(len=1024), intent(in) :: geometryParameter
logical :: file_exists
external :: quit
character(len=:), allocatable :: getGeometryFile
character(len=*), intent(in) :: geometryParameter
logical :: file_exists
external :: quit
getGeometryFile = trim(geometryParameter)
if (scan(getGeometryFile,'/') /= 1) getGeometryFile = trim(getCWD())//'/'//trim(getGeometryFile)
getGeometryFile = makeRelativePath(trim(getCWD()), getGeometryFile)
if (scan(getGeometryFile,'/') /= 1) getGeometryFile = getCWD()//'/'//trim(getGeometryFile)
getGeometryFile = makeRelativePath(getCWD(), getGeometryFile)
inquire(file=trim(getGeometryFile), exist=file_exists)
if (.not. file_exists) then
@ -360,15 +362,16 @@ end function getGeometryFile
!--------------------------------------------------------------------------------------------------
!> @brief relative path of loadcase from command line arguments
!--------------------------------------------------------------------------------------------------
character(len=1024) function getLoadCaseFile(loadCaseParameter)
function getLoadCaseFile(loadCaseParameter)
character(len=1024), intent(in) :: loadCaseParameter
logical :: file_exists
external :: quit
character(len=:), allocatable :: getLoadCaseFile
character(len=*), intent(in) :: loadCaseParameter
logical :: file_exists
external :: quit
getLoadCaseFile = trim(loadCaseParameter)
if (scan(getLoadCaseFile,'/') /= 1) getLoadCaseFile = trim(getCWD())//'/'//trim(getLoadCaseFile)
getLoadCaseFile = makeRelativePath(trim(getCWD()), getLoadCaseFile)
if (scan(getLoadCaseFile,'/') /= 1) getLoadCaseFile = getCWD()//'/'//trim(getLoadCaseFile)
getLoadCaseFile = makeRelativePath(getCWD(), getLoadCaseFile)
inquire(file=trim(getLoadCaseFile), exist=file_exists)
if (.not. file_exists) then

View File

@ -46,10 +46,10 @@ subroutine FE_init
call IO_open_inputFile(FILEUNIT)
rewind(FILEUNIT)
do
read (FILEUNIT,'(a256)',END=100) line
read (FILEUNIT,'(A)',END=100) line
chunkPos = IO_stringPos(line)
if(IO_lc(IO_stringValue(line,chunkPos,1)) == 'solver') then
read (FILEUNIT,'(a256)',END=100) line ! next line
read (FILEUNIT,'(A)',END=100) line ! next line
chunkPos = IO_stringPos(line)
symmetricSolver = (IO_intValue(line,chunkPos,2) /= 1)
endif

View File

@ -13,6 +13,8 @@ module IO
private
character(len=*), parameter, public :: &
IO_EOF = '#EOF#' !< end of file string
character, parameter, public :: &
IO_EOL = new_line(' ') !< end of line str
character(len=*), parameter, private :: &
IO_DIVIDER = '───────────────────'//&
'───────────────────'//&
@ -21,9 +23,8 @@ module IO
public :: &
IO_init, &
IO_read_ASCII, &
IO_open_file, &
IO_open_file, & ! deprecated, use IO_read_ASCII
IO_open_jobFile_binary, &
IO_write_jobFile, &
IO_isBlank, &
IO_getTag, &
IO_stringPos, &
@ -43,15 +44,10 @@ module IO
IO_countDataLines
#elif defined(Marc4DAMASK)
IO_fixedNoEFloatValue, &
IO_fixedIntValue, &
IO_countNumericalDataLines
IO_fixedIntValue
#endif
#endif
private :: &
IO_verifyFloatValue, &
IO_verifyIntValue
contains
@ -103,7 +99,7 @@ function IO_read_ASCII(fileName) result(fileContent)
! count lines to allocate string array
myTotalLines = 1
do l=1, len(rawData)
if (rawData(l:l) == new_line('')) myTotalLines = myTotalLines+1
if (rawData(l:l) == IO_EOL) myTotalLines = myTotalLines+1
enddo
allocate(fileContent(myTotalLines))
@ -113,7 +109,7 @@ function IO_read_ASCII(fileName) result(fileContent)
startPos = 1
l = 1
do while (l <= myTotalLines)
endPos = merge(startPos + scan(rawData(startPos:),new_line('')) - 2,len(rawData),l /= myTotalLines)
endPos = merge(startPos + scan(rawData(startPos:),IO_EOL) - 2,len(rawData),l /= myTotalLines)
if (endPos - startPos > pStringLen-1) then
line = rawData(startPos:startPos+pStringLen-1)
if (.not. warned) then
@ -248,7 +244,7 @@ subroutine IO_open_inputFile(fileUnit)
do
read(unit2,'(A256)',END=220) line
read(unit2,'(A)',END=220) line
chunkPos = IO_stringPos(line)
if (IO_lc(IO_StringValue(line,chunkPos,1))=='*include') then
@ -289,25 +285,6 @@ end subroutine IO_open_inputFile
#endif
!--------------------------------------------------------------------------------------------------
!> @brief opens ASCII file to given unit for writing. File is named after solver job name plus
!! given extension and located in current working directory
!--------------------------------------------------------------------------------------------------
subroutine IO_write_jobFile(fileUnit,ext)
integer, intent(in) :: fileUnit !< file unit
character(len=*), intent(in) :: ext !< extension of file
integer :: myStat
character(len=1024) :: path
path = trim(getSolverJobName())//'.'//ext
open(fileUnit,status='replace',iostat=myStat,file=path)
if (myStat /= 0) call IO_error(100,el=myStat,ext_msg=path)
end subroutine IO_write_jobFile
!--------------------------------------------------------------------------------------------------
!> @brief identifies strings without content
!--------------------------------------------------------------------------------------------------
@ -406,7 +383,7 @@ function IO_stringValue(string,chunkPos,myChunk,silent)
logical :: warn
if (present(silent)) then
warn = silent
warn = .not. silent
else
warn = .false.
endif
@ -436,11 +413,10 @@ real(pReal) function IO_floatValue (string,chunkPos,myChunk)
valuePresent: if (myChunk > chunkPos(1) .or. myChunk < 1) then
call IO_warning(201,el=myChunk,ext_msg=MYNAME//trim(string))
else valuePresent
IO_floatValue = &
IO_verifyFloatValue(trim(adjustl(string(chunkPos(myChunk*2):chunkPos(myChunk*2+1)))),&
VALIDCHARACTERS,MYNAME)
endif valuePresent
else valuePresent
IO_floatValue = verifyFloatValue(trim(adjustl(string(chunkPos(myChunk*2):chunkPos(myChunk*2+1)))),&
VALIDCHARACTERS,MYNAME)
endif valuePresent
end function IO_floatValue
@ -461,7 +437,7 @@ integer function IO_intValue(string,chunkPos,myChunk)
valuePresent: if (myChunk > chunkPos(1) .or. myChunk < 1) then
call IO_warning(201,el=myChunk,ext_msg=MYNAME//trim(string))
else valuePresent
IO_intValue = IO_verifyIntValue(trim(adjustl(string(chunkPos(myChunk*2):chunkPos(myChunk*2+1)))),&
IO_intValue = verifyIntValue(trim(adjustl(string(chunkPos(myChunk*2):chunkPos(myChunk*2+1)))),&
VALIDCHARACTERS,MYNAME)
endif valuePresent
@ -487,13 +463,13 @@ real(pReal) function IO_fixedNoEFloatValue (string,ends,myChunk)
pos_exp = scan(string(ends(myChunk)+1:ends(myChunk+1)),'+-',back=.true.)
hasExponent: if (pos_exp > 1) then
base = IO_verifyFloatValue(trim(adjustl(string(ends(myChunk)+1:ends(myChunk)+pos_exp-1))),&
VALIDBASE,MYNAME//'(base): ')
expon = IO_verifyIntValue(trim(adjustl(string(ends(myChunk)+pos_exp:ends(myChunk+1)))),&
VALIDEXP,MYNAME//'(exp): ')
base = verifyFloatValue(trim(adjustl(string(ends(myChunk)+1:ends(myChunk)+pos_exp-1))),&
VALIDBASE,MYNAME//'(base): ')
expon = verifyIntValue(trim(adjustl(string(ends(myChunk)+pos_exp:ends(myChunk+1)))),&
VALIDEXP,MYNAME//'(exp): ')
else hasExponent
base = IO_verifyFloatValue(trim(adjustl(string(ends(myChunk)+1:ends(myChunk+1)))),&
VALIDBASE,MYNAME//'(base): ')
base = verifyFloatValue(trim(adjustl(string(ends(myChunk)+1:ends(myChunk+1)))),&
VALIDBASE,MYNAME//'(base): ')
expon = 0
endif hasExponent
IO_fixedNoEFloatValue = base*10.0_pReal**real(expon,pReal)
@ -512,7 +488,7 @@ integer function IO_fixedIntValue(string,ends,myChunk)
character(len=*), parameter :: MYNAME = 'IO_fixedIntValue: '
character(len=*), parameter :: VALIDCHARACTERS = '0123456789+-'
IO_fixedIntValue = IO_verifyIntValue(trim(adjustl(string(ends(myChunk)+1:ends(myChunk+1)))),&
IO_fixedIntValue = verifyIntValue(trim(adjustl(string(ends(myChunk)+1:ends(myChunk+1)))),&
VALIDCHARACTERS,MYNAME)
end function IO_fixedIntValue
@ -552,8 +528,8 @@ subroutine IO_error(error_ID,el,ip,g,instance,ext_msg)
character(len=*), optional, intent(in) :: ext_msg
external :: quit
character(len=1024) :: msg
character(len=1024) :: formatString
character(len=pStringLen) :: msg
character(len=pStringLen) :: formatString
select case (error_ID)
@ -572,14 +548,8 @@ subroutine IO_error(error_ID,el,ip,g,instance,ext_msg)
msg = 'could not read file:'
case (103)
msg = 'could not assemble input files'
case (104)
msg = '{input} recursion limit reached'
case (105)
msg = 'unknown output:'
case (106)
msg = 'working directory does not exist:'
case (107)
msg = 'line length exceeds limit of 256'
!--------------------------------------------------------------------------------------------------
! lattice error messages
@ -799,8 +769,8 @@ subroutine IO_warning(warning_ID,el,ip,g,ext_msg)
integer, optional, intent(in) :: el,ip,g
character(len=*), optional, intent(in) :: ext_msg
character(len=1024) :: msg
character(len=1024) :: formatString
character(len=pStringLen) :: msg
character(len=pStringLen) :: formatString
select case (warning_ID)
case (1)
@ -946,38 +916,6 @@ end function IO_countDataLines
#endif
#ifdef Marc4DAMASK
!--------------------------------------------------------------------------------------------------
!> @brief count lines containig data up to next *keyword
!--------------------------------------------------------------------------------------------------
integer function IO_countNumericalDataLines(fileUnit)
integer, intent(in) :: fileUnit !< file handle
integer, allocatable, dimension(:) :: chunkPos
character(len=pStringLen) :: line, &
tmp
IO_countNumericalDataLines = 0
line = ''
do while (trim(line) /= IO_EOF)
line = IO_read(fileUnit)
chunkPos = IO_stringPos(line)
tmp = IO_lc(IO_stringValue(line,chunkPos,1))
if (verify(trim(tmp),'0123456789') == 0) then ! numerical values
IO_countNumericalDataLines = IO_countNumericalDataLines + 1
else
exit
endif
enddo
backspace(fileUnit)
end function IO_countNumericalDataLines
#endif
!--------------------------------------------------------------------------------------------------
!> @brief count items in consecutive lines depending on lines
!> @details Marc: ints concatenated by "c" as last char or range of values a "to" b
@ -1062,7 +1000,7 @@ function IO_continuousIntValues(fileUnit,maxN,lookupName,lookupMap,lookupMaxN)
#if defined(Marc4DAMASK)
do
read(fileUnit,'(A256)',end=100) line
read(fileUnit,'(A)',end=100) line
chunkPos = IO_stringPos(line)
if (chunkPos(1) < 1) then ! empty line
exit
@ -1103,14 +1041,14 @@ function IO_continuousIntValues(fileUnit,maxN,lookupName,lookupMap,lookupMaxN)
!--------------------------------------------------------------------------------------------------
! check if the element values in the elset are auto generated
backspace(fileUnit)
read(fileUnit,'(A256)',end=100) line
read(fileUnit,'(A)',end=100) line
chunkPos = IO_stringPos(line)
do i = 1,chunkPos(1)
if (IO_lc(IO_stringValue(line,chunkPos,i)) == 'generate') rangeGeneration = .true.
enddo
do l = 1,c
read(fileUnit,'(A256)',end=100) line
read(fileUnit,'(A)',end=100) line
chunkPos = IO_stringPos(line)
if (verify(IO_stringValue(line,chunkPos,1),'0123456789') > 0) then ! a non-int, i.e. set names follow on this line
do i = 1,chunkPos(1) ! loop over set names in line
@ -1148,34 +1086,34 @@ function IO_continuousIntValues(fileUnit,maxN,lookupName,lookupMap,lookupMaxN)
!--------------------------------------------------------------------------------------------------
!> @brief returns verified integer value in given string
!--------------------------------------------------------------------------------------------------
integer function IO_verifyIntValue (string,validChars,myName)
integer function verifyIntValue (string,validChars,myName)
character(len=*), intent(in) :: string, & !< string for conversion to int value. Must not contain spaces!
validChars, & !< valid characters in string
myName !< name of caller function (for debugging)
integer :: readStatus, invalidWhere
IO_verifyIntValue = 0
verifyIntValue = 0
invalidWhere = verify(string,validChars)
if (invalidWhere == 0) then
read(UNIT=string,iostat=readStatus,FMT=*) IO_verifyIntValue ! no offending chars found
read(UNIT=string,iostat=readStatus,FMT=*) verifyIntValue ! no offending chars found
if (readStatus /= 0) & ! error during string to integer conversion
call IO_warning(203,ext_msg=myName//'"'//string//'"')
else
call IO_warning(202,ext_msg=myName//'"'//string//'"') ! complain about offending characters
read(UNIT=string(1:invalidWhere-1),iostat=readStatus,FMT=*) IO_verifyIntValue ! interpret remaining string
read(UNIT=string(1:invalidWhere-1),iostat=readStatus,FMT=*) verifyIntValue ! interpret remaining string
if (readStatus /= 0) & ! error during string to integer conversion
call IO_warning(203,ext_msg=myName//'"'//string(1:invalidWhere-1)//'"')
endif
end function IO_verifyIntValue
end function verifyIntValue
!--------------------------------------------------------------------------------------------------
!> @brief returns verified float value in given string
!--------------------------------------------------------------------------------------------------
real(pReal) function IO_verifyFloatValue (string,validChars,myName)
real(pReal) function verifyFloatValue (string,validChars,myName)
character(len=*), intent(in) :: string, & !< string for conversion to int value. Must not contain spaces!
validChars, & !< valid characters in string
@ -1183,20 +1121,20 @@ real(pReal) function IO_verifyFloatValue (string,validChars,myName)
integer :: readStatus, invalidWhere
IO_verifyFloatValue = 0.0_pReal
verifyFloatValue = 0.0_pReal
invalidWhere = verify(string,validChars)
if (invalidWhere == 0) then
read(UNIT=string,iostat=readStatus,FMT=*) IO_verifyFloatValue ! no offending chars found
read(UNIT=string,iostat=readStatus,FMT=*) verifyFloatValue ! no offending chars found
if (readStatus /= 0) & ! error during string to float conversion
call IO_warning(203,ext_msg=myName//'"'//string//'"')
else
call IO_warning(202,ext_msg=myName//'"'//string//'"') ! complain about offending characters
read(UNIT=string(1:invalidWhere-1),iostat=readStatus,FMT=*) IO_verifyFloatValue ! interpret remaining string
read(UNIT=string(1:invalidWhere-1),iostat=readStatus,FMT=*) verifyFloatValue ! interpret remaining string
if (readStatus /= 0) & ! error during string to float conversion
call IO_warning(203,ext_msg=myName//'"'//string(1:invalidWhere-1)//'"')
endif
end function IO_verifyFloatValue
end function verifyFloatValue
end module IO

View File

@ -1,7 +1,7 @@
!--------------------------------------------------------------------------------------------------
!> @author Martin Diehl, Max-Planck-Institut für Eisenforschung GmbH
!> @brief all DAMASK files without solver
!> @details List of files needed by MSC.Marc, Abaqus/Explicit, and Abaqus/Standard
!> @details List of files needed by MSC.Marc and Abaqus/Standard
!--------------------------------------------------------------------------------------------------
#include "IO.f90"
#include "numerics.f90"
@ -15,7 +15,6 @@
#include "rotations.f90"
#include "FEsolving.f90"
#include "element.f90"
#include "mesh_base.f90"
#include "HDF5_utilities.f90"
#include "results.f90"
#include "geometry_plastic_nonlocal.f90"

View File

@ -11,7 +11,6 @@ module constitutive
use config
use material
use results
use HDF5_utilities
use lattice
use discretization
use plastic_none
@ -587,11 +586,11 @@ subroutine constitutive_results
character(len=pStringLen) :: group
do p=1,size(config_name_phase)
group = trim('current/constituent')//'/'//trim(config_name_phase(p))
call HDF5_closeGroup(results_addGroup(group))
call results_closeGroup(results_addGroup(group))
group = trim(group)//'/plastic'
call HDF5_closeGroup(results_addGroup(group))
call results_closeGroup(results_addGroup(group))
select case(phase_plasticity(p))
case(PLASTICITY_ISOTROPIC_ID)

View File

@ -118,7 +118,7 @@ contains
!--------------------------------------------------------------------------------------------------
subroutine crystallite_init
logical, dimension(:,:), allocatable :: devNull
logical, dimension(discretization_nIP,discretization_nElem) :: devNull
integer :: &
c, & !< counter in integration point component loop
i, & !< counter in integration point loop

View File

@ -39,7 +39,7 @@ module element
integer, parameter, private :: &
NELEMTYPE = 13
integer, dimension(NelemType), parameter, private :: NNODE = &
integer, dimension(NELEMTYPE), parameter, private :: NNODE = &
[ &
3, & ! 2D 3node 1ip
6, & ! 2D 6node 3ip
@ -57,7 +57,7 @@ module element
20 & ! 3D 20node 27ip
] !< number of nodes that constitute a specific type of element
integer, dimension(NelemType), parameter, public :: GEOMTYPE = &
integer, dimension(NELEMTYPE), parameter, public :: GEOMTYPE = &
[ &
1, &
2, &
@ -74,8 +74,7 @@ module element
10 &
] !< geometry type of particular element type
!integer, dimension(maxval(geomType)), parameter, private :: NCELLNODE = & ! Intel 16.0 complains
integer, dimension(10), parameter, private :: NCELLNODE = &
integer, dimension(maxval(GEOMTYPE)), parameter, private :: NCELLNODE = &
[ &
3, &
7, &
@ -89,8 +88,7 @@ module element
64 &
] !< number of cell nodes in a specific geometry type
!integer, dimension(maxval(geomType)), parameter, private :: NIP = & ! Intel 16.0 complains
integer, dimension(10), parameter, private :: NIP = &
integer, dimension(maxval(GEOMTYPE)), parameter, private :: NIP = &
[ &
1, &
3, &
@ -104,8 +102,7 @@ module element
27 &
] !< number of IPs in a specific geometry type
!integer, dimension(maxval(geomType)), parameter, private :: CELLTYPE = & ! Intel 16.0 complains
integer, dimension(10), parameter, private :: CELLTYPE = &
integer, dimension(maxval(GEOMTYPE)), parameter, private :: CELLTYPE = &
[ &
1, & ! 2D 3node
2, & ! 2D 4node
@ -119,8 +116,7 @@ module element
4 & ! 3D 8node
] !< cell type that is used by each geometry type
!integer, dimension(maxval(cellType)), parameter, private :: nIPNeighbor = & ! Intel 16.0 complains
integer, dimension(4), parameter, private :: NIPNEIGHBOR = &
integer, dimension(maxval(CELLTYPE)), parameter, private :: NIPNEIGHBOR = &
[ &
3, & ! 2D 3node
4, & ! 2D 4node
@ -128,8 +124,7 @@ module element
6 & ! 3D 8node
] !< number of ip neighbors / cell faces in a specific cell type
!integer, dimension(maxval(cellType)), parameter, private :: NCELLNODESPERCELLFACE = & ! Intel 16.0 complains
integer, dimension(4), parameter, private :: NCELLNODEPERCELLFACE = &
integer, dimension(maxval(CELLTYPE)), parameter, private :: NCELLNODEPERCELLFACE = &
[ &
2, & ! 2D 3node
2, & ! 2D 4node
@ -137,8 +132,7 @@ module element
4 & ! 3D 8node
] !< number of cell nodes in a specific cell type
!integer, dimension(maxval(CELLTYPE)), parameter, private :: NCELLNODEPERCELL = & ! Intel 16.0 complains
integer, dimension(4), parameter, private :: NCELLNODEPERCELL = &
integer, dimension(maxval(CELLTYPE)), parameter, private :: NCELLNODEPERCELL = &
[ &
3, & ! 2D 3node
4, & ! 2D 4node

View File

@ -10,32 +10,24 @@ module geometry_plastic_nonlocal
use results
implicit none
private
public
integer, public, protected :: &
integer, protected :: &
geometry_plastic_nonlocal_nIPneighbors
integer, dimension(:,:,:,:), allocatable, public, protected :: &
integer, dimension(:,:,:,:), allocatable, protected :: &
geometry_plastic_nonlocal_IPneighborhood !< 6 or less neighboring IPs as [element ID, IP ID, face ID that point to me]
real(pReal), dimension(:,:), allocatable, public, protected :: &
real(pReal), dimension(:,:), allocatable, protected :: &
geometry_plastic_nonlocal_IPvolume0 !< volume associated with IP (initially!)
real(pReal), dimension(:,:,:), allocatable, public, protected :: &
real(pReal), dimension(:,:,:), allocatable, protected :: &
geometry_plastic_nonlocal_IParea0 !< area of interface to neighboring IP (initially!)
real(pReal), dimension(:,:,:,:), allocatable, public, protected :: &
real(pReal), dimension(:,:,:,:), allocatable, protected :: &
geometry_plastic_nonlocal_IPareaNormal0 !< area normal of interface to neighboring IP (initially!)
public :: &
geometry_plastic_nonlocal_setIPneighborhood, &
geometry_plastic_nonlocal_setIPvolume, &
geometry_plastic_nonlocal_setIParea, &
geometry_plastic_nonlocal_setIPareaNormal, &
geometry_plastic_nonlocal_results, &
geometry_plastic_nonlocal_disable
contains
!---------------------------------------------------------------------------------------------------
@ -96,7 +88,7 @@ end subroutine geometry_plastic_nonlocal_setIPareaNormal
!---------------------------------------------------------------------------------------------------
!> @brief Frees memory used by variables only needed by plastic_nonlocal
!> @brief Free memory used by variables only needed by plastic_nonlocal
!---------------------------------------------------------------------------------------------------
subroutine geometry_plastic_nonlocal_disable
@ -116,7 +108,7 @@ end subroutine geometry_plastic_nonlocal_disable
!---------------------------------------------------------------------------------------------------
!> @brief Writes geometry data to results file
!> @brief Write geometry data to results file
!---------------------------------------------------------------------------------------------------
subroutine geometry_plastic_nonlocal_results

View File

@ -15,7 +15,6 @@ module grid_damage_spectral
use mesh_grid
use damage_nonlocal
use numerics
use damage_nonlocal
implicit none
private
@ -55,7 +54,7 @@ contains
!--------------------------------------------------------------------------------------------------
subroutine grid_damage_spectral_init
PetscInt, dimension(worldsize) :: localK
PetscInt, dimension(0:worldsize-1) :: localK
integer :: i, j, k, cell
DM :: damage_grid
Vec :: uBound, lBound
@ -79,8 +78,8 @@ subroutine grid_damage_spectral_init
! initialize solver specific parts of PETSc
call SNESCreate(PETSC_COMM_WORLD,damage_snes,ierr); CHKERRQ(ierr)
call SNESSetOptionsPrefix(damage_snes,'damage_',ierr);CHKERRQ(ierr)
localK = 0
localK(worldrank+1) = grid3
localK = 0
localK(worldrank) = grid3
call MPI_Allreduce(MPI_IN_PLACE,localK,worldsize,MPI_INTEGER,MPI_SUM,PETSC_COMM_WORLD,ierr)
call DMDACreate3D(PETSC_COMM_WORLD, &
DM_BOUNDARY_NONE, DM_BOUNDARY_NONE, DM_BOUNDARY_NONE, & ! cut off stencil at boundary

View File

@ -7,22 +7,20 @@
module grid_mech_FEM
#include <petsc/finclude/petscsnes.h>
#include <petsc/finclude/petscdmda.h>
use DAMASK_interface
use HDF5_utilities
use PETScdmda
use PETScsnes
use prec
use CPFEM2
use IO
use debug
use DAMASK_interface
use HDF5_utilities
use math
use spectral_utilities
use FEsolving
use numerics
use homogenization
use DAMASK_interface
use spectral_utilities
use discretization
use mesh_grid
use math
use debug
implicit none
private
@ -52,10 +50,10 @@ module grid_mech_FEM
F_aimDot = 0.0_pReal, & !< assumed rate of average deformation gradient
F_aim = math_I3, & !< current prescribed deformation gradient
F_aim_lastIter = math_I3, &
F_aim_lastInc = math_I3, & !< previous average deformation gradient
F_aim_lastInc = math_I3, & !< previous average deformation gradient
P_av = 0.0_pReal !< average 1st Piola--Kirchhoff stress
character(len=1024), private :: incInfo !< time and increment information
character(len=pStringLen), private :: incInfo !< time and increment information
real(pReal), private, dimension(3,3,3,3) :: &
C_volAvg = 0.0_pReal, & !< current volume average stiffness
@ -82,8 +80,8 @@ contains
!--------------------------------------------------------------------------------------------------
subroutine grid_mech_FEM_init
real(pReal) :: HGCoeff = 0e-2_pReal
PetscInt, dimension(:), allocatable :: localK
real(pReal) :: HGCoeff = 0.0e-2_pReal
PetscInt, dimension(0:worldsize-1) :: localK
real(pReal), dimension(3,3) :: &
temp33_Real = 0.0_pReal
real(pReal), dimension(4,8) :: &
@ -96,7 +94,6 @@ subroutine grid_mech_FEM_init
1.0_pReal,-1.0_pReal,-1.0_pReal,-1.0_pReal, &
1.0_pReal, 1.0_pReal, 1.0_pReal, 1.0_pReal], [4,8])
PetscErrorCode :: ierr
integer :: rank
integer(HID_T) :: fileHandle, groupHandle
character(len=pStringLen) :: fileName
real(pReal), dimension(3,3,3,3) :: devNull
@ -123,10 +120,9 @@ subroutine grid_mech_FEM_init
! initialize solver specific parts of PETSc
call SNESCreate(PETSC_COMM_WORLD,mech_snes,ierr); CHKERRQ(ierr)
call SNESSetOptionsPrefix(mech_snes,'mech_',ierr);CHKERRQ(ierr)
allocate(localK(worldsize), source = 0); localK(worldrank+1) = grid3
do rank = 1, worldsize
call MPI_Bcast(localK(rank),1,MPI_INTEGER,rank-1,PETSC_COMM_WORLD,ierr)
enddo
localK = 0
localK(worldrank) = grid3
call MPI_Allreduce(MPI_IN_PLACE,localK,worldsize,MPI_INTEGER,MPI_SUM,PETSC_COMM_WORLD,ierr)
call DMDACreate3d(PETSC_COMM_WORLD, &
DM_BOUNDARY_PERIODIC, DM_BOUNDARY_PERIODIC, DM_BOUNDARY_PERIODIC, &
DMDA_STENCIL_BOX, &

View File

@ -15,13 +15,11 @@ module grid_mech_spectral_basic
use HDF5_utilities
use math
use spectral_utilities
use IO
use FEsolving
use config
use numerics
use homogenization
use mesh_grid
use CPFEM2
use debug
implicit none
@ -57,7 +55,7 @@ module grid_mech_spectral_basic
F_aim_lastInc = math_I3, & !< previous average deformation gradient
P_av = 0.0_pReal !< average 1st Piola--Kirchhoff stress
character(len=1024), private :: incInfo !< time and increment information
character(len=pStringLen), private :: incInfo !< time and increment information
real(pReal), private, dimension(3,3,3,3) :: &
C_volAvg = 0.0_pReal, & !< current volume average stiffness
C_volAvgLastInc = 0.0_pReal, & !< previous volume average stiffness
@ -284,7 +282,7 @@ subroutine grid_mech_spectral_basic_forward(cutBack,guess,timeinc,timeinc_old,lo
F_aimDot = merge(stress_BC%maskFloat*(F_aim-F_aim_lastInc)/timeinc_old, 0.0_pReal, guess)
F_aim_lastInc = F_aim
!--------------------------------------------------------------------------------------------------
!-----------------------------------------------------------------------------------------------
! calculate rate for aim
if (deformation_BC%myType=='l') then ! calculate F_aimDot from given L and current F
F_aimDot = &
@ -364,7 +362,7 @@ subroutine grid_mech_spectral_basic_restartWrite
if (num%update_gamma) call utilities_saveReferenceStiffness
call DMDAVecRestoreArrayF90(da,solution_vec,F,ierr); CHKERRQ(ierr)
end subroutine grid_mech_spectral_basic_restartWrite

View File

@ -16,13 +16,11 @@ module grid_mech_spectral_polarisation
use math
use rotations
use spectral_utilities
use IO
use FEsolving
use config
use numerics
use homogenization
use mesh_grid
use CPFEM2
use debug
implicit none
@ -61,7 +59,7 @@ module grid_mech_spectral_polarisation
F_av = 0.0_pReal, & !< average incompatible def grad field
P_av = 0.0_pReal !< average 1st Piola--Kirchhoff stress
character(len=1024), private :: incInfo !< time and increment information
character(len=pStringLen), private :: incInfo !< time and increment information
real(pReal), private, dimension(3,3,3,3) :: &
C_volAvg = 0.0_pReal, & !< current volume average stiffness
C_volAvgLastInc = 0.0_pReal, & !< previous volume average stiffness
@ -102,7 +100,7 @@ subroutine grid_mech_spectral_polarisation_init
FandF_tau, & ! overall pointer to solution data
F, & ! specific (sub)pointer
F_tau ! specific (sub)pointer
PetscInt, dimension(worldsize) :: localK
PetscInt, dimension(0:worldsize-1) :: localK
integer(HID_T) :: fileHandle, groupHandle
integer :: fileUnit
character(len=pStringLen) :: fileName
@ -132,8 +130,8 @@ subroutine grid_mech_spectral_polarisation_init
! initialize solver specific parts of PETSc
call SNESCreate(PETSC_COMM_WORLD,snes,ierr); CHKERRQ(ierr)
call SNESSetOptionsPrefix(snes,'mech_',ierr);CHKERRQ(ierr)
localK = 0
localK(worldrank+1) = grid3
localK = 0
localK(worldrank) = grid3
call MPI_Allreduce(MPI_IN_PLACE,localK,worldsize,MPI_INTEGER,MPI_SUM,PETSC_COMM_WORLD,ierr)
call DMDACreate3d(PETSC_COMM_WORLD, &
DM_BOUNDARY_NONE, DM_BOUNDARY_NONE, DM_BOUNDARY_NONE, & ! cut off stencil at boundary

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@ -14,8 +14,8 @@ module grid_thermal_spectral
use spectral_utilities
use mesh_grid
use thermal_conduction
use material
use numerics
use material
implicit none
private
@ -55,7 +55,7 @@ contains
!--------------------------------------------------------------------------------------------------
subroutine grid_thermal_spectral_init
PetscInt, dimension(worldsize) :: localK
PetscInt, dimension(0:worldsize-1) :: localK
integer :: i, j, k, cell
DM :: thermal_grid
PetscScalar, dimension(:,:,:), pointer :: x_scal
@ -77,8 +77,8 @@ subroutine grid_thermal_spectral_init
! initialize solver specific parts of PETSc
call SNESCreate(PETSC_COMM_WORLD,thermal_snes,ierr); CHKERRQ(ierr)
call SNESSetOptionsPrefix(thermal_snes,'thermal_',ierr);CHKERRQ(ierr)
localK = 0
localK(worldrank+1) = grid3
localK = 0
localK(worldrank) = grid3
call MPI_Allreduce(MPI_IN_PLACE,localK,worldsize,MPI_INTEGER,MPI_SUM,PETSC_COMM_WORLD,ierr)
call DMDACreate3D(PETSC_COMM_WORLD, &
DM_BOUNDARY_NONE, DM_BOUNDARY_NONE, DM_BOUNDARY_NONE, & ! cut off stencil at boundary

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@ -700,7 +700,7 @@ function utilities_maskedCompliance(rot_BC,mask_stress,C)
c_reduced, & !< reduced stiffness (depending on number of stress BC)
sTimesC !< temp variable to check inversion
logical :: errmatinv
character(len=1024):: formatString
character(len=pStringLen):: formatString
mask_stressVector = reshape(transpose(mask_stress), [9])
size_reduced = count(mask_stressVector)

View File

@ -65,7 +65,7 @@ subroutine kinematics_cleavage_opening_init
integer :: maxNinstance,p,instance
write(6,'(/,a)') ' <<<+- kinematics_'//KINEMATICS_cleavage_opening_LABEL//' init -+>>>'
write(6,'(/,a)') ' <<<+- kinematics_'//KINEMATICS_cleavage_opening_LABEL//' init -+>>>'; flush(6)
maxNinstance = count(phase_kinematics == KINEMATICS_cleavage_opening_ID)
if (maxNinstance == 0) return

View File

@ -51,7 +51,7 @@ subroutine kinematics_slipplane_opening_init
integer :: maxNinstance,p,instance
write(6,'(/,a)') ' <<<+- kinematics_'//KINEMATICS_slipplane_opening_LABEL//' init -+>>>'
write(6,'(/,a)') ' <<<+- kinematics_'//KINEMATICS_slipplane_opening_LABEL//' init -+>>>'; flush(6)
maxNinstance = count(phase_kinematics == KINEMATICS_slipplane_opening_ID)
if (maxNinstance == 0) return
@ -134,51 +134,35 @@ subroutine kinematics_slipplane_opening_LiAndItsTangent(Ld, dLd_dTstar, S, ipc,
dLd_dTstar = 0.0_pReal
do i = 1, prm%totalNslip
projection_d = math_outer(prm%slip_direction(1:3,i),prm%slip_normal(1:3,i))
projection_d = math_outer(prm%slip_direction(1:3,i), prm%slip_normal(1:3,i))
projection_t = math_outer(prm%slip_transverse(1:3,i),prm%slip_normal(1:3,i))
projection_n = math_outer(prm%slip_normal(1:3,i),prm%slip_normal(1:3,i))
projection_n = math_outer(prm%slip_normal(1:3,i), prm%slip_normal(1:3,i))
traction_d = math_mul33xx33(S,projection_d)
traction_t = math_mul33xx33(S,projection_t)
traction_n = math_mul33xx33(S,projection_n)
traction_crit = prm%critLoad(i)* damage(homog)%p(damageOffset) ! degrading critical load carrying capacity by damage
traction_crit = prm%critLoad(i)* damage(homog)%p(damageOffset) ! degrading critical load carrying capacity by damage
udotd = sign(1.0_pReal,traction_d)* &
prm%sdot0* &
(abs(traction_d)/traction_crit - &
abs(traction_d)/prm%critLoad(i))**prm%n
if (abs(udotd) > tol_math_check) then
Ld = Ld + udotd*projection_d
dudotd_dt = udotd*prm%n/traction_d
forall (k=1:3,l=1:3,m=1:3,n=1:3) &
dLd_dTstar(k,l,m,n) = dLd_dTstar(k,l,m,n) + &
dudotd_dt*projection_d(k,l)*projection_d(m,n)
endif
udott = sign(1.0_pReal,traction_t)* &
prm%sdot0* &
(abs(traction_t)/traction_crit - &
abs(traction_t)/prm%critLoad(i))**prm%n
if (abs(udott) > tol_math_check) then
Ld = Ld + udott*projection_t
dudott_dt = udott*prm%n/traction_t
forall (k=1:3,l=1:3,m=1:3,n=1:3) &
dLd_dTstar(k,l,m,n) = dLd_dTstar(k,l,m,n) + &
dudott_dt*projection_t(k,l)*projection_t(m,n)
endif
udotd = sign(1.0_pReal,traction_d)* prm%sdot0* ( abs(traction_d)/traction_crit &
- abs(traction_d)/prm%critLoad(i))**prm%n
udott = sign(1.0_pReal,traction_t)* prm%sdot0* ( abs(traction_t)/traction_crit &
- abs(traction_t)/prm%critLoad(i))**prm%n
udotn = prm%sdot0* ( max(0.0_pReal,traction_n)/traction_crit &
- max(0.0_pReal,traction_n)/prm%critLoad(i))**prm%n
udotn = &
prm%sdot0* &
(max(0.0_pReal,traction_n)/traction_crit - &
max(0.0_pReal,traction_n)/prm%critLoad(i))**prm%n
if (abs(udotn) > tol_math_check) then
Ld = Ld + udotn*projection_n
dudotn_dt = udotn*prm%n/traction_n
forall (k=1:3,l=1:3,m=1:3,n=1:3) &
dLd_dTstar(k,l,m,n) = dLd_dTstar(k,l,m,n) + &
dudotn_dt*projection_n(k,l)*projection_n(m,n)
endif
dudotd_dt = udotd*prm%n/traction_d
dudott_dt = udott*prm%n/traction_t
dudotn_dt = udotn*prm%n/traction_n
forall (k=1:3,l=1:3,m=1:3,n=1:3) &
dLd_dTstar(k,l,m,n) = dLd_dTstar(k,l,m,n) + dudotd_dt*projection_d(k,l)*projection_d(m,n) &
+ dudott_dt*projection_t(k,l)*projection_t(m,n) &
+ dudotn_dt*projection_n(k,l)*projection_n(m,n)
Ld = Ld + udotd*projection_d &
+ udott*projection_t &
+ udotn*projection_n
enddo
end associate

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@ -42,7 +42,7 @@ subroutine kinematics_thermal_expansion_init
real(pReal), dimension(:), allocatable :: &
temp
write(6,'(/,a)') ' <<<+- kinematics_'//KINEMATICS_thermal_expansion_LABEL//' init -+>>>'
write(6,'(/,a)') ' <<<+- kinematics_'//KINEMATICS_thermal_expansion_LABEL//' init -+>>>'; flush(6)
Ninstance = count(phase_kinematics == KINEMATICS_thermal_expansion_ID)

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@ -371,7 +371,7 @@ module lattice
1,-1, 1, -2,-1, 1, &
-1, 1, 1, -1,-2, 1, &
1, 1, 1, 1,-2, 1 &
],pReal),[ 3 + 3,LATTICE_BCT_NSLIP]) !< slip systems for bct sorted by Bieler
],pReal),shape(LATTICE_BCT_SYSTEMSLIP)) !< slip systems for bct sorted by Bieler
!--------------------------------------------------------------------------------------------------
! isotropic
@ -387,7 +387,7 @@ module lattice
0, 1, 0, 1, 0, 0, &
0, 0, 1, 0, 1, 0, &
1, 0, 0, 0, 0, 1 &
],pReal),[ 3 + 3,LATTICE_ISO_NCLEAVAGE])
],pReal),shape(LATTICE_ISO_SYSTEMCLEAVAGE))
!--------------------------------------------------------------------------------------------------
@ -404,7 +404,7 @@ module lattice
0, 1, 0, 1, 0, 0, &
0, 0, 1, 0, 1, 0, &
1, 0, 0, 0, 0, 1 &
],pReal),[ 3 + 3,LATTICE_ORT_NCLEAVAGE])
],pReal),shape(LATTICE_ORT_SYSTEMCLEAVAGE))
@ -483,21 +483,22 @@ module lattice
lattice_slip_normal, &
lattice_slip_direction, &
lattice_slip_transverse, &
lattice_labels_slip
lattice_labels_slip, &
lattice_labels_twin
contains
!--------------------------------------------------------------------------------------------------
!> @brief Module initialization
!--------------------------------------------------------------------------------------------------
subroutine lattice_init
integer :: Nphases
integer :: Nphases, p
character(len=pStringLen) :: &
tag = ''
integer :: i,p
real(pReal) :: CoverA
real(pReal), dimension(:), allocatable :: &
temp, &
CoverA !< c/a ratio for low symmetry type lattice
temp
write(6,'(/,a)') ' <<<+- lattice init -+>>>'
@ -515,15 +516,13 @@ subroutine lattice_init
allocate(lattice_specificHeat ( Nphases), source=0.0_pReal)
allocate(lattice_referenceTemperature ( Nphases), source=300.0_pReal)
allocate(lattice_mu(Nphases), source=0.0_pReal)
allocate(lattice_nu(Nphases), source=0.0_pReal)
allocate(lattice_mu(Nphases), source=0.0_pReal)
allocate(lattice_nu(Nphases), source=0.0_pReal)
allocate(lattice_Scleavage(3,3,3,lattice_maxNcleavage,Nphases),source=0.0_pReal)
allocate(lattice_NcleavageSystem(lattice_maxNcleavageFamily,Nphases),source=0)
allocate(CoverA(Nphases),source=0.0_pReal)
do p = 1, size(config_phase)
tag = config_phase(p)%getString('lattice_structure')
select case(trim(tag(1:3)))
@ -553,7 +552,7 @@ subroutine lattice_init
lattice_C66(6,6,p) = config_phase(p)%getFloat('c66',defaultVal=0.0_pReal)
CoverA(p) = config_phase(p)%getFloat('c/a',defaultVal=0.0_pReal)
CoverA = config_phase(p)%getFloat('c/a',defaultVal=0.0_pReal)
lattice_thermalConductivity33(1,1,p) = config_phase(p)%getFloat('thermal_conductivity11',defaultVal=0.0_pReal)
lattice_thermalConductivity33(2,2,p) = config_phase(p)%getFloat('thermal_conductivity22',defaultVal=0.0_pReal)
@ -573,14 +572,12 @@ subroutine lattice_init
lattice_DamageDiffusion33(2,2,p) = config_phase(p)%getFloat( 'damage_diffusion22',defaultVal=0.0_pReal)
lattice_DamageDiffusion33(3,3,p) = config_phase(p)%getFloat( 'damage_diffusion33',defaultVal=0.0_pReal)
lattice_DamageMobility(p) = config_phase(p)%getFloat( 'damage_mobility',defaultVal=0.0_pReal)
enddo
do i = 1,Nphases
if ((CoverA(i) < 1.0_pReal .or. CoverA(i) > 2.0_pReal) &
.and. lattice_structure(i) == LATTICE_hex_ID) call IO_error(131,el=i) ! checking physical significance of c/a
if ((CoverA(i) > 2.0_pReal) &
.and. lattice_structure(i) == LATTICE_bct_ID) call IO_error(131,el=i) ! checking physical significance of c/a
call lattice_initializeStructure(i, CoverA(i))
if ((CoverA < 1.0_pReal .or. CoverA > 2.0_pReal) &
.and. lattice_structure(p) == LATTICE_hex_ID) call IO_error(131,el=p) ! checking physical significance of c/a
if ((CoverA > 2.0_pReal) &
.and. lattice_structure(p) == LATTICE_bct_ID) call IO_error(131,el=p) ! checking physical significance of c/a
call lattice_initializeStructure(p, CoverA)
enddo
end subroutine lattice_init
@ -1955,7 +1952,7 @@ function lattice_labels_slip(Nslip,structure) result(labels)
if (any(Nslip < 0)) &
call IO_error(144,ext_msg='Nslip '//trim(structure))
labels = getLabels(Nslip,NslipMax,slipSystems,structure)
labels = getLabels(Nslip,NslipMax,slipSystems)
end function lattice_labels_slip
@ -1996,7 +1993,7 @@ function lattice_labels_twin(Ntwin,structure) result(labels)
if (any(Ntwin < 0)) &
call IO_error(144,ext_msg='Ntwin '//trim(structure))
labels = getLabels(Ntwin,NtwinMax,twinSystems,structure)
labels = getLabels(Ntwin,NtwinMax,twinSystems)
end function lattice_labels_twin
@ -2119,8 +2116,8 @@ end function buildInteraction
function buildCoordinateSystem(active,potential,system,structure,cOverA)
integer, dimension(:), intent(in) :: &
active, &
potential
active, & !< # of active systems per family
potential !< # of potential systems per family
real(pReal), dimension(:,:), intent(in) :: &
system
character(len=*), intent(in) :: &
@ -2311,14 +2308,13 @@ end subroutine buildTransformationSystem
!--------------------------------------------------------------------------------------------------
!> @brief select active systems as strings
!--------------------------------------------------------------------------------------------------
function getlabels(active,potential,system,structure) result(labels)
function getlabels(active,potential,system) result(labels)
integer, dimension(:), intent(in) :: &
active, &
potential
real(pReal), dimension(:,:), intent(in) :: &
integer, dimension(:), intent(in) :: &
active, & !< # of active systems per family
potential !< # of potential systems per family
real(pReal), dimension(:,:), intent(in) :: &
system
character(len=*), intent(in) :: structure !< lattice structure
character(len=:), dimension(:), allocatable :: labels
character(len=:), allocatable :: label
@ -2340,15 +2336,16 @@ function getlabels(active,potential,system,structure) result(labels)
p = sum(potential(1:f-1))+s
i = 1
label(i:i) = merge('[','<',structure(1:3) /= 'bct')
label(i:i) = '['
direction: do j = 1, size(system,1)/2
write(label(i+1:i+2),"(I2.1)") int(system(j,p))
label(i+3:i+3) = ' '
i = i + 3
enddo direction
label(i:i) = ']'
i = i +1
label(i:i) = merge('(','{',structure(1:3) /= 'bct')
label(i:i) = '('
normal: do j = size(system,1)/2+1, size(system,1)
write(label(i+1:i+2),"(I2.1)") int(system(j,p))
label(i+3:i+3) = ' '

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@ -398,22 +398,22 @@ pure function math_exp33(A,n)
real(pReal), dimension(3,3), intent(in) :: A
real(pReal), dimension(3,3) :: B, math_exp33
real(pReal) :: invFac
integer :: order
B = math_I3 ! init
invFac = 1.0_pReal ! 0!
math_exp33 = B ! A^0 = eye2
integer :: n_
if (present(n)) then
order = n
n_ = n
else
order = 5
n_ = 5
endif
do i = 1, order
invFac = invFac/real(i,pReal) ! invfac = 1/i!
invFac = 1.0_pReal ! 0!
B = math_I3
math_exp33 = math_I3 ! A^0 = I
do i = 1, n_
invFac = invFac/real(i,pReal) ! invfac = 1/(i!)
B = matmul(B,A)
math_exp33 = math_exp33 + invFac*B ! exp = SUM (A^i)/i!
math_exp33 = math_exp33 + invFac*B ! exp = SUM (A^i)/(i!)
enddo
end function math_exp33
@ -489,8 +489,8 @@ function math_invSym3333(A)
real(pReal), dimension(6*(64+2)) :: work
logical :: error
external :: &
dgetrf, &
dgetri
dgetrf, &
dgetri
temp66 = math_sym3333to66(A)
call dgetrf(6,6,temp66,6,ipiv6,ierr)
@ -519,8 +519,8 @@ subroutine math_invert(InvA, error, A)
real(pReal), dimension(size(A,1)*(64+2)) :: work
integer :: ierr
external :: &
dgetrf, &
dgetri
dgetrf, &
dgetri
invA = A
call dgetrf(size(A,1),size(A,1),invA,size(A,1),ipiv,ierr)
@ -882,16 +882,20 @@ real(pReal) function math_sampleGaussVar(meanvalue, stddev, width)
real(pReal), intent(in), optional :: width ! width of considered values as multiples of standard deviation
real(pReal), dimension(2) :: rnd ! random numbers
real(pReal) :: scatter, & ! normalized scatter around meanvalue
myWidth
width_
if (abs(stddev) < tol_math_check) then
math_sampleGaussVar = meanvalue
else
myWidth = merge(width,3.0_pReal,present(width)) ! use +-3*sigma as default value for scatter if not given
if (present(width)) then
width_ = width
else
width_ = 3.0_pReal ! use +-3*sigma as default scatter
endif
do
call random_number(rnd)
scatter = myWidth * (2.0_pReal * rnd(1) - 1.0_pReal)
scatter = width_ * (2.0_pReal * rnd(1) - 1.0_pReal)
if (rnd(2) <= exp(-0.5_pReal * scatter ** 2.0_pReal)) exit ! test if scattered value is drawn
enddo

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@ -20,7 +20,6 @@ module mesh
use FEsolving
use FEM_Zoo
use prec
use mesh_base
implicit none
private
@ -53,18 +52,6 @@ module mesh
PetscInt, dimension(:), allocatable, public, protected :: &
mesh_boundaries
type, public, extends(tMesh) :: tMesh_FEM
contains
procedure, pass(self) :: tMesh_FEM_init
generic, public :: init => tMesh_FEM_init
end type tMesh_FEM
type(tMesh_FEM), public, protected :: theMesh
public :: &
mesh_init, &
mesh_FEM_build_ipVolumes, &
@ -72,24 +59,6 @@ module mesh
contains
subroutine tMesh_FEM_init(self,dimen,order,nodes)
integer, intent(in) :: dimen
integer, intent(in) :: order
real(pReal), intent(in), dimension(:,:) :: nodes
class(tMesh_FEM) :: self
if (dimen == 2) then
if (order == 1) call self%tMesh%init('mesh',1,nodes)
if (order == 2) call self%tMesh%init('mesh',2,nodes)
elseif(dimen == 3) then
if (order == 1) call self%tMesh%init('mesh',6,nodes)
if (order == 2) call self%tMesh%init('mesh',8,nodes)
endif
end subroutine tMesh_FEM_init
!--------------------------------------------------------------------------------------------------
!> @brief initializes the mesh by calling all necessary private routines the mesh module
@ -217,8 +186,6 @@ subroutine mesh_init
forall (j = 1:mesh_NcpElems) FEsolving_execIP(2,j) = FE_Nips(FE_geomtype(mesh_element(2,j))) ! ...up to own IP count for each element
allocate(mesh_node0(3,mesh_Nnodes),source=0.0_pReal)
call theMesh%init(dimplex,integrationOrder,mesh_node0)
call theMesh%setNelems(mesh_NcpElems)
call discretization_init(mesh_element(3,:),mesh_element(4,:),&
reshape(mesh_ipCoordinates,[3,mesh_maxNips*mesh_NcpElems]), &

View File

@ -7,7 +7,6 @@
!--------------------------------------------------------------------------------------------------
module mesh
use prec
use mesh_base
use geometry_plastic_nonlocal
use discretization
use math

View File

@ -1,74 +0,0 @@
!--------------------------------------------------------------------------------------------------
!> @author Franz Roters, Max-Planck-Institut für Eisenforschung GmbH
!> @author Philip Eisenlohr, Max-Planck-Institut für Eisenforschung GmbH
!> @author Christoph Koords, Max-Planck-Institut für Eisenforschung GmbH
!> @author Martin Diehl, Max-Planck-Institut für Eisenforschung GmbH
!> @brief Sets up the mesh for the solvers MSC.Marc,FEM, Abaqus and the spectral solver
!--------------------------------------------------------------------------------------------------
module mesh_base
use prec
use element
implicit none
!---------------------------------------------------------------------------------------------------
!> Properties of a whole mesh (consisting of one type of elements)
!---------------------------------------------------------------------------------------------------
type, public :: tMesh
type(tElement) :: &
elem
real(pReal), dimension(:,:), allocatable, public :: &
ipVolume, & !< volume associated with each IP (initially!)
node_0, & !< node x,y,z coordinates (initially)
node !< node x,y,z coordinates (deformed)
integer(pInt), dimension(:,:), allocatable, public :: &
cellnodeParent !< cellnode's parent element ID, cellnode's intra-element ID
character(pStringLen) :: type = "n/a"
integer(pInt) :: &
Nnodes, & !< total number of nodes in mesh
Nelems = -1_pInt, &
elemType, &
Ncells, &
nIPneighbors, &
NcellNodes
integer(pInt), dimension(:,:), allocatable, public :: &
connectivity
contains
procedure, pass(self) :: tMesh_base_init
procedure :: setNelems => tMesh_base_setNelems ! not needed once we compute the cells from the connectivity
generic, public :: init => tMesh_base_init
end type tMesh
contains
subroutine tMesh_base_init(self,meshType,elemType,nodes)
class(tMesh) :: self
character(len=*), intent(in) :: meshType
integer(pInt), intent(in) :: elemType
real(pReal), dimension(:,:), intent(in) :: nodes
write(6,'(/,a)') ' <<<+- mesh_base_init -+>>>'
write(6,*)' mesh type ',meshType
write(6,*)' # node ',size(nodes,2)
self%type = meshType
call self%elem%init(elemType)
self%node_0 = nodes
self%nNodes = size(nodes,2)
end subroutine tMesh_base_init
subroutine tMesh_base_setNelems(self,Nelems)
class(tMesh) :: self
integer(pInt), intent(in) :: Nelems
self%Nelems = Nelems
end subroutine tMesh_base_setNelems
end module mesh_base

View File

@ -173,7 +173,7 @@ subroutine readGeom(grid,geomSize,origin,microstructure,homogenization)
!--------------------------------------------------------------------------------------------------
! get header length
endPos = index(rawData,new_line(''))
if(endPos <= index(rawData,'head')) then
if(endPos <= index(rawData,'head')) then ! ToDo: Should be 'header'
startPos = len(rawData)
call IO_error(error_ID=841, ext_msg='readGeom')
else
@ -277,13 +277,13 @@ subroutine readGeom(grid,geomSize,origin,microstructure,homogenization)
compression: if (IO_lc(IO_stringValue(line,chunkPos,2)) == 'of') then
c = IO_intValue(line,chunkPos,1)
microstructure(e:e+c-1) = [(IO_intValue(line,chunkPos,3),i = 1,IO_intValue(line,chunkPos,1))]
else if (IO_lc(IO_stringValue(line,chunkPos,2)) == 'to') then compression
else if (IO_lc(IO_stringValue(line,chunkPos,2)) == 'to') then compression
c = abs(IO_intValue(line,chunkPos,3) - IO_intValue(line,chunkPos,1)) + 1
o = merge(+1, -1, IO_intValue(line,chunkPos,3) > IO_intValue(line,chunkPos,1))
microstructure(e:e+c-1) = [(i, i = IO_intValue(line,chunkPos,1),IO_intValue(line,chunkPos,3),o)]
else compression
c = chunkPos(1)
microstructure(e:e+c-1) = [(IO_intValue(line,chunkPos,i+1), i=0, c-1)]
microstructure(e:e+c-1) = [(IO_intValue(line,chunkPos,i+1), i=0, c-1)]
endif compression
endif noCompression

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@ -9,7 +9,6 @@ module mesh
use IO
use prec
use math
use mesh_base
use DAMASK_interface
use IO
use debug
@ -37,12 +36,6 @@ module mesh
mesh_mapFEtoCPelem, & !< [sorted FEid, corresponding CPid]
mesh_mapFEtoCPnode !< [sorted FEid, corresponding CPid]
!--------------------------------------------------------------------------------------------------
! DEPRECATED
real(pReal), dimension(:,:,:), allocatable, public :: &
mesh_ipCoordinates !< IP x,y,z coordinates (after deformation!)
!--------------------------------------------------------------------------------------------------
public :: &
mesh_init, &
mesh_FEasCP
@ -97,8 +90,6 @@ subroutine mesh_init(ip,el)
calcMode(ip,mesh_FEasCP('elem',el)) = .true. ! first ip,el needs to be already pingponged to "calc"
allocate(mesh_ipCoordinates(3,elem%nIPs,nElems),source=0.0_pReal) ! deprecated
allocate(cellNodeDefinition(elem%nNodes-1))
allocate(connectivity_cell(elem%NcellNodesPerCell,elem%nIPs,nElems))
call buildCells(connectivity_cell,cellNodeDefinition,&
@ -497,8 +488,7 @@ subroutine inputRead_mapNodes(fileContent)
chunkPos = IO_stringPos(fileContent(l))
if( IO_lc(IO_stringValue(fileContent(l),chunkPos,1)) == 'coordinates' ) then
do i = 1,size(mesh_mapFEtoCPnode,2)
mesh_mapFEtoCPnode(1,i) = IO_fixedIntValue (fileContent(l+1+i),[0,10],1)
mesh_mapFEtoCPnode(2,i) = i
mesh_mapFEtoCPnode(1:2,i) = [IO_fixedIntValue (fileContent(l+1+i),[0,10],1),i] ! ToDo: use IO_intValue
enddo
exit
endif
@ -529,9 +519,9 @@ subroutine inputRead_elemNodes(nodes, &
chunkPos = IO_stringPos(fileContent(l))
if( IO_lc(IO_stringValue(fileContent(l),chunkPos,1)) == 'coordinates' ) then
do i=1,nNode
m = mesh_FEasCP('node',IO_fixedIntValue(fileContent(l+1+i),node_ends,1))
m = mesh_FEasCP('node',IO_fixedIntValue(fileContent(l+1+i),node_ends,1)) !ToDo: use IO_intValue
do j = 1,3
nodes(j,m) = mesh_unitlength * IO_fixedNoEFloatValue(fileContent(l+1+i),node_ends,j+1)
nodes(j,m) = mesh_unitlength * IO_fixedNoEFloatValue(fileContent(l+1+i),node_ends,j+1) !ToDo: use IO_floatValue
enddo
enddo
exit

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@ -79,9 +79,12 @@ module prec
real(pReal), private, parameter :: PREAL_EPSILON = epsilon(0.0_pReal) !< minimum positive number such that 1.0 + EPSILON /= 1.0.
real(pReal), private, parameter :: PREAL_MIN = tiny(0.0_pReal) !< smallest normalized floating point number
integer, dimension(0), parameter, public :: emptyIntArray = [integer::]
real(pReal), dimension(0), parameter, public :: emptyRealArray = [real(pReal)::]
character(len=pStringLen), dimension(0), parameter, public :: emptyStringArray = [character(len=pStringLen)::]
integer, dimension(0), parameter, public :: &
emptyIntArray = [integer::]
real(pReal), dimension(0), parameter, public :: &
emptyRealArray = [real(pReal)::]
character(len=pStringLen), dimension(0), parameter, public :: &
emptyStringArray = [character(len=pStringLen)::]
private :: &
unitTest

View File

@ -2,8 +2,7 @@
!> @author Martin Diehl, Max-Planck-Institut für Eisenforschung GmbH
!> @brief quit subroutine
!> @details exits the program and reports current time and duration. Exit code 0 signals
!> everything is fine. Exit code 1 signals an error, message according to IO_error. Exit code
!> 2 signals no severe problems, but some increments did not converge
!> everything is fine. Exit code 1 signals an error, message according to IO_error.
!--------------------------------------------------------------------------------------------------
subroutine quit(stop_id)
#include <petsc/finclude/petscsys.h>
@ -11,7 +10,7 @@ subroutine quit(stop_id)
#ifdef _OPENMP
use MPI
#endif
use hdf5
use HDF5
implicit none
integer, intent(in) :: stop_id

View File

@ -47,6 +47,7 @@ module results
results_openJobFile, &
results_closeJobFile, &
results_addIncrement, &
results_finalizeIncrement, &
results_addGroup, &
results_openGroup, &
results_closeGroup, &
@ -68,14 +69,14 @@ subroutine results_init
write(6,'(a)') ' https://doi.org/10.1007/s40192-017-0084-5'
resultsFile = HDF5_openFile(trim(getSolverJobName())//'.hdf5','w',.true.)
call HDF5_addAttribute(resultsFile,'DADF5_version_major',0)
call HDF5_addAttribute(resultsFile,'DADF5_version_minor',5)
call HDF5_addAttribute(resultsFile,'DAMASK_version',DAMASKVERSION)
call results_addAttribute('DADF5_version_major',0)
call results_addAttribute('DADF5_version_minor',5)
call results_addAttribute('DAMASK_version',DAMASKVERSION)
call get_command(commandLine)
call HDF5_addAttribute(resultsFile,'call',trim(commandLine))
call HDF5_closeGroup(results_addGroup('mapping'))
call HDF5_closeGroup(results_addGroup('mapping/cellResults'))
call HDF5_closeFile(resultsFile)
call results_addAttribute('call',trim(commandLine))
call results_closeGroup(results_addGroup('mapping'))
call results_closeGroup(results_addGroup('mapping/cellResults'))
call results_closeJobFile
end subroutine results_init
@ -110,16 +111,26 @@ subroutine results_addIncrement(inc,time)
character(len=pStringLen) :: incChar
write(incChar,'(i10)') inc
call HDF5_closeGroup(results_addGroup(trim('inc'//trim(adjustl(incChar)))))
call results_closeGroup(results_addGroup(trim('inc'//trim(adjustl(incChar)))))
call results_setLink(trim('inc'//trim(adjustl(incChar))),'current')
call HDF5_addAttribute(resultsFile,'time/s',time,trim('inc'//trim(adjustl(incChar))))
call HDF5_closeGroup(results_addGroup('current/constituent'))
call HDF5_closeGroup(results_addGroup('current/materialpoint'))
call results_addAttribute('time/s',time,trim('inc'//trim(adjustl(incChar))))
call results_closeGroup(results_addGroup('current/constituent'))
call results_closeGroup(results_addGroup('current/materialpoint'))
end subroutine results_addIncrement
!--------------------------------------------------------------------------------------------------
!> @brief finalize increment
!> @details remove soft link
!--------------------------------------------------------------------------------------------------
subroutine results_finalizeIncrement
call results_removeLink('current')
end subroutine results_finalizeIncrement
!--------------------------------------------------------------------------------------------------
!> @brief open a group from the results file
!--------------------------------------------------------------------------------------------------
@ -173,9 +184,14 @@ end subroutine results_setLink
!--------------------------------------------------------------------------------------------------
subroutine results_addAttribute_str(attrLabel,attrValue,path)
character(len=*), intent(in) :: attrLabel, attrValue, path
character(len=*), intent(in) :: attrLabel, attrValue
character(len=*), intent(in), optional :: path
call HDF5_addAttribute(resultsFile,attrLabel, attrValue, path)
if (present(path)) then
call HDF5_addAttribute(resultsFile,attrLabel, attrValue, path)
else
call HDF5_addAttribute(resultsFile,attrLabel, attrValue)
endif
end subroutine results_addAttribute_str
@ -185,10 +201,15 @@ end subroutine results_addAttribute_str
!--------------------------------------------------------------------------------------------------
subroutine results_addAttribute_int(attrLabel,attrValue,path)
character(len=*), intent(in) :: attrLabel, path
integer, intent(in) :: attrValue
character(len=*), intent(in) :: attrLabel
integer, intent(in) :: attrValue
character(len=*), intent(in), optional :: path
call HDF5_addAttribute(resultsFile,attrLabel, attrValue, path)
if (present(path)) then
call HDF5_addAttribute(resultsFile,attrLabel, attrValue, path)
else
call HDF5_addAttribute(resultsFile,attrLabel, attrValue)
endif
end subroutine results_addAttribute_int
@ -198,10 +219,15 @@ end subroutine results_addAttribute_int
!--------------------------------------------------------------------------------------------------
subroutine results_addAttribute_real(attrLabel,attrValue,path)
character(len=*), intent(in) :: attrLabel, path
real(pReal), intent(in) :: attrValue
character(len=*), intent(in) :: attrLabel
real(pReal), intent(in) :: attrValue
character(len=*), intent(in), optional :: path
call HDF5_addAttribute(resultsFile,attrLabel, attrValue, path)
if (present(path)) then
call HDF5_addAttribute(resultsFile,attrLabel, attrValue, path)
else
call HDF5_addAttribute(resultsFile,attrLabel, attrValue)
endif
end subroutine results_addAttribute_real
@ -211,10 +237,15 @@ end subroutine results_addAttribute_real
!--------------------------------------------------------------------------------------------------
subroutine results_addAttribute_int_array(attrLabel,attrValue,path)
character(len=*), intent(in) :: attrLabel, path
character(len=*), intent(in) :: attrLabel
integer, intent(in), dimension(:) :: attrValue
character(len=*), intent(in), optional :: path
call HDF5_addAttribute(resultsFile,attrLabel, attrValue, path)
if (present(path)) then
call HDF5_addAttribute(resultsFile,attrLabel, attrValue, path)
else
call HDF5_addAttribute(resultsFile,attrLabel, attrValue)
endif
end subroutine results_addAttribute_int_array
@ -224,10 +255,15 @@ end subroutine results_addAttribute_int_array
!--------------------------------------------------------------------------------------------------
subroutine results_addAttribute_real_array(attrLabel,attrValue,path)
character(len=*), intent(in) :: attrLabel, path
character(len=*), intent(in) :: attrLabel
real(pReal), intent(in), dimension(:) :: attrValue
character(len=*), intent(in), optional :: path
call HDF5_addAttribute(resultsFile,attrLabel, attrValue, path)
if (present(path)) then
call HDF5_addAttribute(resultsFile,attrLabel, attrValue, path)
else
call HDF5_addAttribute(resultsFile,attrLabel, attrValue)
endif
end subroutine results_addAttribute_real_array
@ -720,7 +756,6 @@ end subroutine results_mapping_materialpoint
!!> @brief adds the backward mapping from spatial position and constituent ID to results
!!--------------------------------------------------------------------------------------------------
!subroutine HDF5_backwardMappingPhase(material_phase,phasememberat,phase_name,dataspace_size,mpiOffset,mpiOffset_phase)
! use hdf5
! integer(pInt), intent(in), dimension(:,:,:) :: material_phase, phasememberat
! character(len=*), intent(in), dimension(:) :: phase_name
@ -834,7 +869,6 @@ end subroutine results_mapping_materialpoint
!!> @brief adds the backward mapping from spatial position and constituent ID to results
!!--------------------------------------------------------------------------------------------------
!subroutine HDF5_backwardMappingHomog(material_homog,homogmemberat,homogenization_name,dataspace_size,mpiOffset,mpiOffset_homog)
! use hdf5
! integer(pInt), intent(in), dimension(:,:) :: material_homog, homogmemberat
! character(len=*), intent(in), dimension(:) :: homogenization_name
@ -941,7 +975,6 @@ end subroutine results_mapping_materialpoint
!!> @brief adds the unique cell to node mapping
!!--------------------------------------------------------------------------------------------------
!subroutine HDF5_mappingCells(mapping)
! use hdf5
! integer(pInt), intent(in), dimension(:) :: mapping

View File

@ -93,21 +93,24 @@ end function isDirectory
!--------------------------------------------------------------------------------------------------
!> @brief gets the current working directory
!--------------------------------------------------------------------------------------------------
character(len=1024) function getCWD()
function getCWD()
character(kind=C_CHAR), dimension(1024) :: charArray ! C string is an array
character(len=:), allocatable :: getCWD
integer(C_INT) :: stat
integer :: i
call getCurrentWorkDir_C(charArray,stat)
if (stat /= 0_C_INT) then
getCWD = 'Error occured when getting currend working directory'
else
getCWD = repeat('',len(getCWD))
allocate(character(len=1024)::getCWD)
arrayToString: do i=1,len(getCWD)
if (charArray(i) /= C_NULL_CHAR) then
getCWD(i:i)=charArray(i)
else
getCWD = getCWD(:i-1)
exit
endif
enddo arrayToString
@ -119,21 +122,24 @@ end function getCWD
!--------------------------------------------------------------------------------------------------
!> @brief gets the current host name
!--------------------------------------------------------------------------------------------------
character(len=1024) function getHostName()
function getHostName()
character(kind=C_CHAR), dimension(1024) :: charArray ! C string is an array
character(len=:), allocatable :: getHostName
integer(C_INT) :: stat
integer :: i
call getHostName_C(charArray,stat)
if (stat /= 0_C_INT) then
getHostName = 'Error occured when getting host name'
else
getHostName = repeat('',len(getHostName))
allocate(character(len=1024)::getHostName)
arrayToString: do i=1,len(getHostName)
if (charArray(i) /= C_NULL_CHAR) then
getHostName(i:i)=charArray(i)
else
getHostName = getHostName(:i-1)
exit
endif
enddo arrayToString