acc2cb656b
simplifications due to better functionality available through asciitable.py
...
output filename format has slightly changed: binned-X-Y_weighted-W_
2015-05-21 00:08:32 +00:00
439d778cc0
simplified column check.
...
fixed typos and improved help.
2015-05-20 23:21:35 +00:00
973f092fd9
similar to imageData but uses RGB triplet as color value instead of mapping a scalar.
...
Can only use columnar data and not 2D arrays, though.
2015-05-19 21:15:15 +00:00
ee65b269ad
simplified data column determination.
2015-05-19 21:14:19 +00:00
f7faa3eeca
finally fixed the bug in the transformation and incorporated rotation to conform to TSL convention
2015-05-18 22:28:24 +00:00
03fef5fd6e
simplified option parsing
2015-05-15 13:49:16 +00:00
6a38b4396f
simplified help
2015-05-15 13:34:52 +00:00
a3bed5cc42
short options conflicting with typical use
2015-05-15 10:33:32 +00:00
a451a69c2c
corrected default type (only list for 'extend')
2015-05-14 18:48:15 +00:00
3e8f16c515
range parameter is now autoscaled to account for -log option, i.e. range is always given as bounds of original data
2015-05-13 13:45:26 +00:00
b0a37497a1
fixed buggy coordinate transform.
2015-05-12 15:30:00 +00:00
6a98c7efad
simplified option parsing
2015-05-11 20:12:31 +00:00
2102fadfc7
improved help for automatic documentation
2015-05-11 19:47:52 +00:00
537c42d146
script to transform coordinate system at APS beam line 34-ID-E from X,Y,Z,F to strain x,y,z
2015-05-11 14:15:50 +00:00
eff71b418b
now working with corrected asciitable
2015-05-10 20:59:23 +00:00
b60f868a76
renumbering asciitable when readArray for selected columns only
...
test no longer for deleteColumn
2015-05-10 11:29:11 +00:00
8bf7a7ef6a
some beautifications
2015-05-10 10:58:32 +00:00
c0a9141c8f
updated help to enable automated documentation
2015-05-10 10:56:02 +00:00
a03b1ede99
improved help for automatic documentation
2015-05-10 08:59:21 +00:00
d87b70fe49
filterTable can do the job
2015-05-09 21:33:17 +00:00
18831e0e80
improved help for automatic documentation and simplified some scripts
2015-05-09 21:32:23 +00:00
47b8605733
improved help for automatic documentation and simplified some scripts
2015-05-09 13:01:31 +00:00
59e546e3d7
improved help for automatic documentation and simplified some scripts
2015-05-09 12:45:30 +00:00
cb42fb9c5d
clarified help text.
2015-05-05 16:58:56 +00:00
58b3d017bd
changed option name from “invertColor” to “invert”
2015-05-01 17:58:10 +00:00
c05df20370
throw error message when DAMASK output obviously not present in T16 file
2015-04-28 17:54:00 +00:00
895421e677
changed from core module fftw to fftwpack from latex, tolerances need to be less strict
2015-04-24 08:07:13 +00:00
790aa32b1b
fixed string to character splitting of weight column label
2015-04-13 20:24:03 +00:00
4bcc80911e
changed grid to float from (wrong) integer type.
...
row and column probability density normalization now takes place BEFORE limiting data range.
2015-04-13 19:55:28 +00:00
5257a2161f
added options for x and y normalization
2015-04-09 06:45:21 +00:00
57a2c90d30
corrected according to vtk specification and remove an unused option
2015-04-08 18:48:35 +00:00
0544706c7b
corrected help for legacy format
2015-04-08 12:51:40 +00:00
92a67e1a9d
geom_fromAng.py crashed when found empty line (eg. at the end of the file), now fixed
2015-04-01 14:42:25 +00:00
a1956436be
fixed bug introduced last time when searching for keywords in spectralOut header
...
made reading in of header more robust by explicitly using the information given by fortran specifies the data length
introduced a legacy mode again, now it is used to read old spectralOut files prior to rev 4017
2015-04-01 10:02:21 +00:00
38943c1e94
improved help
2015-03-29 15:37:40 +00:00
913c5347a5
removed handling for old legacy format (we might introduce a new one)
2015-03-29 09:08:42 +00:00
66d4ff097f
removed obsolete comment
2015-03-28 11:44:17 +00:00
8a30021202
cleaned up core modul
2015-03-27 14:10:18 +00:00
1ee81e74ea
more patches to get the tests running again:
...
- fixed increment counting in postResults to current output scheme
- corrected node coordinates calculation
- some work on restart (restart test still not running)
2015-03-26 21:19:28 +00:00
fe4373a9f9
updated post processing script for MPI IO spectralOut file
2015-03-25 16:09:56 +00:00
1a3bfc7d1f
updated according to new convention for ip and nodes
2015-03-24 13:52:40 +00:00
12cb5e56fe
fixed interpretation 'spectralOut' header. Seem to have been buggy all the time, but manifested itself only after keyword change. Also added ':' after keywords to be more robust
2015-03-15 15:29:38 +00:00
df2ee87a7c
corrected help
2015-03-13 14:47:22 +00:00
c4f639dbfb
prevent crash in option parsing
2015-03-13 14:46:40 +00:00
def6d6b878
re-introduced determination of elem column
2015-03-12 06:20:40 +00:00
3f340ffac9
fixed bug for table data without labels in header
2015-03-11 20:39:14 +00:00
72efc7b30c
renamed resolution -> grid, dimension -> size
2015-03-11 08:55:48 +00:00
0dde6539ed
renamed from 1_ip to 1_ipinitialcoord
2015-03-11 07:22:11 +00:00
eb1561b528
changed postprocessing to use 1_ip instead of ip.x etc, plus corrected test files headers
2015-03-10 21:15:05 +00:00
271c9eed8b
use 1_ip instead of ip.x
...
Old format still as fallback option to support legacy files
2015-03-09 12:52:43 +00:00
4d587b1bf9
introduced 'alias' for ip.x by first searching for 1_ip
2015-03-09 11:32:16 +00:00
639b030c65
shortened code for opening input file list
2015-03-06 17:04:44 +00:00
654aacf207
removed invalid options (options.packing, options.shift)
2015-03-05 21:41:53 +00:00
53b40662ec
now with executable, correct line endings, and ID tags.
2015-02-11 17:26:56 +00:00
d5f9f543ca
Script to generate PNG image from given column (or 2D data in overall ASCIItable) with custom colormap and pixel sizes.
...
Supersedes “imageFromData” from “Code” repository.
2015-02-11 17:25:49 +00:00
9eae665365
fixed ‘too many files open’ issue when processing a large list of input tables.
2015-02-11 17:22:47 +00:00
1b1ed3bbcf
removed unnecessary lines
2015-02-11 06:18:08 +00:00
63434c2ddb
corrected error checking for correct type
2015-02-09 08:57:14 +00:00
7edd209ce4
corrected wrong name in add..., more verbose error checking for geom_from...
2015-02-07 22:22:28 +00:00
6140285ddd
small changes (use ip.x instead of 1_ip). Probably we should modify postResults to use the 1_, 2_, 3_, standard notation for ip as well
2015-02-07 18:13:51 +00:00
e4a94aa72b
put changes on algorithm from geom_fromEuclideanDistance into addEuclideanDistance
2015-02-07 17:11:46 +00:00
2c9c04eb76
added script to replace all rows of an ASCII table by a single row containing their average
2015-01-23 00:57:10 +00:00
5be9a75cff
fixed indentation
2015-01-22 09:04:01 +00:00
c08f704dee
added Id + a little help
2015-01-07 19:29:27 +00:00
ca58216134
added missing math module import
2015-01-05 12:25:03 +00:00
3e3c13bf0b
added missing math module import
2015-01-04 21:02:17 +00:00
5e8fff13d9
worked on the vtk binary out, still some problems with multicomponent datatypes
2014-12-18 21:46:38 +00:00
6604d0f8e8
polishing
2014-12-18 19:26:52 +00:00
89f8ba979e
Add x,y coordinates of stereographic projection of given direction (pole) in crystal frame.
2014-12-13 00:12:55 +00:00
b17dcd7652
added options ’—origin’ and ‘—geom’. Latter interprets the geom-header to derive voxel sizes.
2014-11-18 15:26:59 +00:00
461a3fa979
fixed syntax error and added ‘—render’ option to immediately see output on screen
2014-11-18 15:24:09 +00:00
a3196669ea
exchanged deprecated data array read function
2014-11-18 15:22:00 +00:00
7136db1fd8
fixed syntax error: ’options.error’ —> ‘parser.error’ for error handling
2014-11-18 15:20:57 +00:00
99ffa554eb
added ‘1_*’ to ‘*’ as possible column label indicator
2014-11-18 15:20:10 +00:00
b5ef329f34
changed default position column format from .x,.y,.z to more standard 1_,2_,3_
2014-11-18 15:18:27 +00:00
f6741138e7
had badly messed up the file handling in commit 3630. STDIN did not work, files were not checked for existence…
2014-10-29 13:27:40 +00:00
bdd2d55383
small bug fix for last commit
2014-10-24 06:36:01 +00:00
13ba71a314
fixed bug where option.condition was altered in processing of first file, thus preventing additional files from seeing the same user input.
...
changed file handle setup to allow for large lists of input files.
2014-10-23 21:23:10 +00:00
dc7a4bb978
using damasks extentable option + correct version string
2014-10-16 14:56:44 +00:00
ce1f17c9cb
worked on the binary vtk out needed for large datasets
2014-10-14 07:13:13 +00:00
23ee538dcb
shortened syntax. fixed undefined file['croak']
2014-10-02 04:49:46 +00:00
496c3d4bc8
added line breaks identifier and $Id$ flag
2014-09-25 21:54:42 +00:00
78ab14806f
fixed bug in parser option type definition
2014-09-21 17:59:06 +00:00
d07a098724
fixed wrong help introduced with last change on 3Dvisualize
2014-09-19 09:50:26 +00:00
a7d831de06
forgot to import python module
2014-09-15 10:07:52 +00:00
5657119b11
updated post processing test: rotateData is doing something, corrected addDeviator defauls
2014-09-12 14:49:26 +00:00
f2c4db0bb5
correcting help and default, some comments
2014-09-12 14:46:12 +00:00
afb9a2186b
removed explicit default setting: type='string' and action='store'
2014-09-12 14:14:55 +00:00
9ba7851c14
fixed bug in calculation of spherical part. Variables in python functions are intent(inout) in Fortran language!
2014-09-12 13:13:05 +00:00
5a159dcdfa
script to add scalar data and/or RGB color tuples to rectilinear VTK file (*.vtr)
2014-09-05 20:28:39 +00:00
6cdcdecdfa
post processing scripts are working again.
...
@Philip: definining one offset for shiftData and one factor for scaleData for tensor/vector/special>1 seems to be more reasonable than per component
2014-08-25 21:13:39 +00:00
c7837e1f66
changed manual input/output close to class method
2014-08-22 16:58:53 +00:00
99e3c9a397
fixed (potentially) buggy rotation of tensors. convention is:
...
with A v = b
v' = R v
A' = R A R^T
such that
A' v' = R A R^T R v = R A v (= R b = b', i.e. old result transformed into other coordinate basis)
2014-08-22 15:32:48 +00:00
df27115472
extended "scalar" capabilities to "special" having arbitrary dimension (defaults to 1, i.e. former scalar case). Breaks backward compatibility since "--scalar" is now "--special". However, "-s" still works as before...
2014-08-22 15:25:51 +00:00
77df55c998
extended "scalar" capabilities to "special" having arbitrary dimension (defaults to 1, i.e. former scalar case). Breaks backward compatibility since "--scalar" is now "--special". However, "-s" still works as before...
2014-08-21 17:16:43 +00:00
9aa22d4a08
simplified column key generation
2014-08-21 16:17:23 +00:00
96b16dd97b
reshape "matrix" input data from (currently wrong) 9x1 to 3x3 layout.
...
simplified input validity check.
2014-08-21 16:14:06 +00:00
15a6015bc2
added some more post processing tests
...
DAMASK env now reports in MiB (GiB is too big for small machines)
2014-08-07 16:51:26 +00:00
649e637561
added some more post processing tests and improved output
2014-08-06 19:06:33 +00:00
938352d43a
fixed calculation of size and dimension in case of 2D (was limited to third dim only)
...
plus polishing
2014-08-06 15:25:18 +00:00
cbafad50d0
some more work on the postprocessing scripts, decreased test tolerance because spectral decomposition has rounding errors (depending on machine/python/numpy version)
2014-08-06 13:27:09 +00:00
a0f9865133
updated to state-of-the art file handling etc
2014-08-04 20:07:20 +00:00
7df8f04f65
updated test for postprocessing and improve some of the scripts
2014-08-04 17:53:41 +00:00
0b93e7c5a5
corrected addDivergence script. Restarting still not working for new state, needs further investigations: tightend tolerances again
2014-07-27 09:43:00 +00:00
e01630e073
fixed bug in tuple assignment
2014-07-25 17:49:22 +00:00
bee6e0b09b
added optional weighting column
2014-07-25 16:38:04 +00:00
d0ecc0943c
added addPK2 script to test
2014-07-24 21:42:13 +00:00
7954c9a4a3
more and improved tests for add...
2014-07-24 20:21:18 +00:00
38048a09f2
introduced use of choice for argparse where applicable
2014-07-24 18:47:09 +00:00
e5dc9e79cc
some more changes improving the post processing scripts
2014-07-22 14:21:49 +00:00
e8d2e787bc
updated first 9 post processing scripts to latest ASCII table handling style
2014-07-21 19:55:05 +00:00
2f0ecdf7e8
improved file handling etc. to follow newest style
2014-07-16 16:41:04 +00:00
e7c282a02d
some further improvements on ASCII table handling
2014-07-10 09:27:51 +00:00
f72a87f94b
polished scripts (option parser, numpy)
2014-07-09 10:07:24 +00:00
51b92f3ef9
simplified option parsing (so far, only for addCalculation and addMises)
2014-06-17 07:10:10 +00:00
596ee18da9
improved the regex for header reading
2014-06-08 14:43:32 +00:00
2f249773c9
fixed missing Python module
2014-06-06 15:11:15 +00:00
32b315487c
removed debug printing
2014-06-06 14:46:41 +00:00
59e8cd1d7e
new script: Add data in column(s) of second ASCIItable selected from row that is given by the value in a mapping column
2014-06-06 14:35:37 +00:00
63c1a0a212
updated to croaking, scriptID, IO-piping.
2014-06-06 09:43:28 +00:00
9834c8466c
scripts to scale, shift, and rotate scalar, vector, or tensor quantities of ASCIItables (in-place!)
2014-05-27 08:08:10 +00:00
65f1f55a87
added option to pre-rotate orientation (change lab frame)
2014-05-26 14:31:42 +00:00
51e7f9eed9
added --reverse option. corrected help hint regarding sorting order
2014-05-23 14:05:58 +00:00
06715dc99f
added "no data check" and updated script backbone to be consistent with other scripts (croak).
2014-05-19 13:43:26 +00:00
0885ea8023
changed variable interpolation to be useable in connection with dictionary definitions for formulas. Slightly less efficient but now much more powerful...
2014-05-02 19:56:56 +00:00
a8a9c8eef5
added possibility to not sort (--sort none) output by its --separation such that the output can be used in conjunction with the VTK files produced by DAMASK.
2014-04-14 21:45:24 +00:00
babde13c6a
capture missing --vtk option
2014-04-03 01:00:00 +00:00
342ca0be47
tested new scripts to update shebang, all files got same shebang (and for python files encoding)
2014-04-01 18:41:14 +00:00
782b54a430
more LF, Id, and executable status changes
2014-04-01 17:52:31 +00:00
188002f16e
more LF, Id, and executable status changes
2014-04-01 16:58:54 +00:00
16743f8631
explicitly state unbuffered ASCIIoutput
2014-03-28 18:15:37 +00:00
0363b1fb04
updated reporting (according to addCauchy)
2014-03-10 14:01:39 +00:00
e10f8f1b5e
corrected typo
2014-03-04 16:43:22 +00:00
6fd8407d6e
moved "predefined" to colormap init
...
cleaned interpolate to not change color model
fixed color range cropping issue
2014-02-28 16:09:01 +00:00
63569b19b6
added use of "defaultdict" from collections
2014-02-28 15:56:28 +00:00
27c83f60a6
fixed typo
2014-02-26 15:05:34 +00:00
7f08c976c3
skip file if mandatory column not found in ASCIItable
2014-02-26 14:56:06 +00:00
98a8b47a09
can now read legacy VTK files with unstructured grid data
2014-02-24 19:23:08 +00:00
a659d071a9
added '--degrees' option to indicate Euler angles unit
2014-02-10 18:01:21 +00:00
85e4896478
"--degrees" option to specify Euler angles in degrees (instead of radians)
2014-02-09 20:36:42 +00:00
3c2af8e7a6
fixed dropped file handle when flushing closed output...
2014-01-29 21:16:44 +00:00
24d7f55f55
check whether output is already stopped (in command piping for instance)
2014-01-29 21:13:36 +00:00
cd18ec2abf
removed unneccesary table.data_rewind, which breaks command piping
2014-01-29 21:03:56 +00:00
ee99216edc
polishing compile_CoreModule, bug fix for Makefile
2014-01-28 07:34:13 +00:00
1bd456aa22
corrected options.error --> parser.error
2014-01-27 14:30:37 +00:00
a1cfc85d74
produce VTK unstructured grid with voxels around all points given in an ASCIItable.
2014-01-27 14:10:29 +00:00
13fed38a2f
add scalar and RGB tuples from ASCIItable to existing VTK voxel cloud (*.vtu)
2014-01-27 14:05:03 +00:00
0f101c8dbf
adopted to improved HDF5 format
2014-01-13 16:22:01 +00:00
a614e76968
first post processing script for HDF5 output
2014-01-07 20:42:51 +00:00
e20ffb379d
changed numpy.readtxt logic from "data_asArray" returning a copy to inplace "data_readArray" now directly storing into self.data
2013-12-14 03:51:22 +00:00
600389ac44
new script to sort ASCIItable according to (multiple) columns
2013-12-14 03:48:50 +00:00
0f8790c148
clarified help string
2013-12-12 08:48:57 +00:00
10c8a1a3ce
corrected typo in usage hint
2013-12-12 02:35:01 +00:00
894776ca67
fixed stupid bug addressing a dict by dict{key} instead of dict[key]
2013-12-11 14:30:27 +00:00
44b3687e7c
added option to invert output data range (1.0 -- 0.0 instead of 0.0 -- 1.0)
2013-12-10 00:27:22 +00:00
e4cea31a9d
small bug fix: options.error --> parser.error
2013-12-09 15:58:35 +00:00
e2d4cc8b3d
fixed former nonsense definition of lab frame direction
2013-12-09 15:57:21 +00:00
26690859bb
deal more gracefully with problematic user input.
2013-12-09 15:54:47 +00:00
090fca8683
deleted left-over debug statement
2013-11-26 20:24:40 +00:00
d498eca242
deleted left-over debug statement
2013-11-26 20:22:52 +00:00
b63d2eafe8
new scripts for:
...
-generating vtk point cloud from x,y,z ASCIItable data
-adding scalar values and color tuples from ASCIItable to vtk point cloud
-permuting data in ASCIItable columns (used to shuffle ordered grain indices)
2013-11-26 20:19:27 +00:00
a45c7dbb62
new ASCIItable scripts to add
...
- quaternion and/or Euler representation of lattice orientation (given in rotation matrix, etc.)
- RGB color code of crystal direction in laboratory frame (matching closely the TSL-OIM scheme of inverse pole figures).
2013-11-25 19:11:02 +00:00
feaccae652
set threshold for values treated as zero to 1.e-12 (was 1.e-15) to avoid flip in strain direction
2013-11-19 19:39:14 +00:00
1915215c6f
commented out not working use of vtk class
2013-09-20 11:27:11 +00:00
a17b85cba8
deleted wrong colormap script, was there twice. correct one (modified recently by Philip) is called perceptualUniformColormap
2013-09-11 08:15:05 +00:00
022696c8f3
fixed output to screen
2013-09-11 07:45:42 +00:00
538a471246
updated $Id$ handling.
...
added (colored) my script's name reporting.
2013-09-09 14:12:00 +00:00
ec6587e7f5
corrected help message
2013-09-09 14:11:16 +00:00
26df077c2a
translating scalar data that contain vector components to vector data
2013-07-22 08:24:04 +00:00
a39005ef1c
added possibility to specify formula with array return type
...
added support for numpy
2013-07-16 21:48:23 +00:00
0fa9f7dc22
can now show data for tables lacking column labels (use option --nolabels)
2013-07-08 11:56:16 +00:00
e3a1e70542
started to use vtk class for writing results
2013-06-27 18:21:20 +00:00
13227dff0f
corrected calculation of origin
2013-06-22 14:13:29 +00:00
0740845d81
allow coordinates to not be in consecutive columns
...
keep origin of original data set
2013-06-20 07:36:35 +00:00
e6499e1a39
renamed script in order to distinguish from "add" scripts that act on ascii tables
2013-06-13 09:05:30 +00:00
becacb675a
linear reconstruction no longer needed for odd resolution
2013-06-05 14:05:11 +00:00
e635b06270
last polishing on preprocessing scripts, documentation and scripts are all up to date.
...
added addSchmidfactors to post processing scripts
2013-06-04 12:56:57 +00:00
32a16f9745
wildcard matching for column headings, e.g. "[159]_p" to extract only the diagonal elements (scalars) of stress, or "[1-9]_p" to extract all nine values.
...
fixed VTK file format problem where double precision floats were incorrectly interpreted because they were announced as "float" (now "double").
2013-05-29 10:24:00 +00:00
837574278e
removed (now) unused function for reading of configFile
2013-05-28 14:47:50 +00:00
10a32dc17b
use predefined maps in damask.Colormap class; no need for a colorMap config file anymore
2013-05-28 14:18:21 +00:00
8fd590d7bd
added red--blue map
2013-05-24 07:41:44 +00:00
19dc95a915
now able to choose vector that is used for warpvector filter via option.dispLabel
2013-05-22 21:23:01 +00:00
75ee54146b
deleted unused function
2013-05-22 21:20:00 +00:00
53348db000
tested the modified scripts, all scripts generating geometry now named geom_from...
2013-05-15 16:02:38 +00:00
deb2bd7dca
added option to only process ip or node based geometry/data
2013-05-13 10:06:40 +00:00
7f7cd0732d
improved visualization of script results
2013-05-13 09:36:19 +00:00
193c77f526
corrected prediction of computation time
2013-05-09 11:33:40 +00:00
ed1674ee1c
changed default value of eulerangles label
2013-05-09 11:32:34 +00:00
2d4cb6d128
first point on slice always starts at (0,0)
...
added option to visualize results
2013-05-08 15:59:51 +00:00
bd33169118
mistakenly committed table2ang in rev 2380, instead of vtk2ang. reverted changes in table2ang
2013-05-08 15:58:17 +00:00
ed9413a008
added simple output about progress
2013-05-07 14:32:38 +00:00
543cbf3a14
first point on slice always starts at (0,0)
2013-05-07 13:18:26 +00:00
c7f987a3c1
"unitlength" parameter, which determines the physical size of the mesh, now available as a global mesh variable "mesh_unitlength" and written to the .mesh file during init.
...
Hence, it is available to the marc_deformedGeometry.py script via "mesh_init_postprocessing()" and "mesh_get_unitlength()", so no need for setting the scaling of the displacement vectors explicitly through an option; now displacements and nodal positions are always consistent
2013-05-07 13:06:29 +00:00
9656d06fcc
- all length in nag file in micrometer
...
- "size" option replaced by "scale": uniform scaling of all length
- default normal in negative z-direction
- more output in verbose mode
- ang file numbering starts with 1
- positions in ang file in TSL, not lab frame
2013-05-07 12:57:34 +00:00
278198121d
only import vtk classes that were used
2013-05-06 16:55:44 +00:00
f5482ffbf4
new script that generates ang files for slices through vtk data set
2013-05-06 16:37:54 +00:00
43647fc5e6
use datatype double instead of float for ouputs
2013-04-30 14:45:29 +00:00
12ca2c1931
added scaling option for displacements
2013-04-29 16:02:30 +00:00
9afaa9f4d0
set "line breaks" and "keywords" property
2013-04-29 09:24:07 +00:00
fbb8353bba
check if data set attribute is already present
2013-04-29 09:23:16 +00:00
cc72c0b17b
added two new scripts:
...
"marc_extractData" is a simple variant of the "postResult" script that extracts all data from a macro *.t16 file (quadratic elements not yet supported) and writes it into an asciitable
"addDataToGeometry" searches for corresponding *.txt and *.vtk file in a given directory and adds the data from the *.txt file as SCALARS to the *.vtk file
first script needed an additional function in mesh that returns the corresponding node of a given ip in a specific element
2013-04-28 20:56:17 +00:00
650b7ef4ac
added python script that produces vtk files with the (node based and ip based) deformed mesh from marc output file
2013-04-23 18:30:56 +00:00
b572c71db0
fixed small bug in error reporting (missing column head complaint was broken...)
2013-04-16 20:10:17 +00:00
b4f67248a5
deleted two simple scripts used for debugging but with almost no use any more
2013-04-12 13:22:15 +00:00
770712529d
one more bug fix related to scaling
2013-03-26 16:16:59 +00:00
ccef9d4f73
fixed scaling option
2013-03-26 14:18:29 +00:00
5b96c1d62a
scaling of deformation gradient fluctuations now possible in x,y,z independently (give array).
2013-03-22 15:09:55 +00:00
cd86a80c2b
corrected handling of default value and cases where the deformation gradient is not f
2013-03-19 18:22:14 +00:00
43ec1d2051
added output of perceptual unfiform colormaps to GOM (DIC Aramis) format, deleted some old files in the documentation folder
2013-03-19 15:19:46 +00:00
757c3e5a04
fixed bug in averageDown and updated test
2013-03-13 16:23:02 +00:00
30024af6c2
polished string concatenations
2013-02-14 21:33:11 +00:00
a7e7a857c3
readjusted color values to work nicely with Msh colorspace (as in ParaView)
2013-02-02 20:17:54 +00:00
ac562f4b8b
changed internal color mapping to damask.Colormap class
2013-02-02 15:12:43 +00:00
e74b5da19a
changed all remaining routines to fortran-fast arrays (geometry reconstruction etc.)
...
changed all remaining routines in f2py to more clever determination of array size (requires f2py >= 2.0)
enabled 3D visualize to work with odd resolution by switching to linear reconstruction
PLEASE NOTE: Redefinition of routines for f2py might cause trouble -> DELETE DAMASK_ROOT/lib/damask/core.so in this case
further changes: added pure statement where possible, polished, unified use of "Q" for "Quaternion" and reordered math to have similar routines together
2013-01-31 16:28:08 +00:00
963ff0c3ae
added support for tetrahedron element with 4 integration points (Marc ID 127)
2013-01-28 16:25:43 +00:00
e691ff1ea1
updated setup_processing and corrected descriptions for new scripts
2013-01-22 09:56:36 +00:00
a4abebfcbb
some potentially useful postprocessing scripts
2013-01-21 23:15:23 +00:00
5676330e93
parsing options and file handling for perceptually linear diverging and sequential colormaps
2013-01-18 17:15:30 +00:00
e51779579e
removed (unsupported) "--geom" option.
2013-01-18 13:01:43 +00:00
7ac7d1a657
new tool for creation of colormaps, now using proper classes
2013-01-15 18:24:10 +00:00
cd5197556b
sequential colormapping with options for desired color and type(increasing or decreasing) is now working
2013-01-04 19:50:39 +00:00
820b8eb2c1
put colormap related functions into library, renamed and added scripts for creation of colormaps
2013-01-04 13:57:36 +00:00
6ab79d5593
added options for parsing and the colormap. Customized colormap is written out as an xml file importable into paraview.
2013-01-04 12:04:05 +00:00
3242361c91
added a minor change to the string expression and the for loop.
2013-01-04 12:01:34 +00:00
7157e8f03c
changed some of the color-space conversion formulae.
2013-01-04 12:00:10 +00:00
a69aaa1315
Use scipy euclidean distance function instead of FMM (runs without skfmm
...
module installed)
2012-12-19 14:50:45 +00:00
260e4191a0
replaced tabs by spaces
2012-12-13 18:15:10 +00:00
dfb791bcaf
only complain about missing Mentat release if needed...
2012-12-12 08:33:42 +00:00
34645a7222
write warning about missing Mentat release to stderr instead of stdout
2012-12-12 08:21:59 +00:00
93d822aaa1
symmetric colormap always with pure white in the middle
2012-12-11 16:50:34 +00:00
726d1173e5
polishing
2012-12-07 17:46:28 +00:00
c4ef2e5925
bug fixes
2012-12-07 17:41:50 +00:00
eaf7072bc1
Vectorized checking of neighbourhood for unique microstructure
...
(faster)
M addEuclideanDistance.py
2012-12-07 10:50:34 +00:00
a37250eef4
script to add the Euclidean distance map from boundaries, triple lines, and quadruple points to an ASCIItable of a regular grid.
...
requires numpy, scipy, and skfmm...
2012-12-06 21:49:49 +00:00
2d4cf7da74
conditions can handle string data.
...
use "#s#label#" format to indicate that column headed by "label" contains strings (not floats)...
2012-12-03 14:29:21 +00:00
7d96bb7ce8
Add column(s) containing directional stiffness based on given cubic stiffness values C11, C12, and C44 (in consecutive columns)
2012-12-03 13:10:16 +00:00
faa5f3c459
corrected severe bug in (non-logarithmic) strain calculations..!
2012-11-30 15:02:25 +00:00
72159e867c
fixed buggy file handling for multiple input files
2012-11-30 11:03:53 +00:00
74f62c891d
slightly safer file closing strategy
2012-11-30 08:38:52 +00:00
9fb838fd28
changed switch from "sequential" to "column"
2012-11-30 08:29:34 +00:00
1bd6bcfe3d
script to list info, labels, and/or data of an ASCIItable
2012-11-30 08:26:13 +00:00
f446d4d87e
added wildcard matching ( "?", "*", "[(!)sequence_of_characters]" ) for ASCII table labels
2012-11-29 10:42:13 +00:00
255af58434
post processing script to add eigenvalues and eigenvectors to tensorial data in ASCII tables.
2012-11-23 21:49:30 +00:00
78c22d8449
corrected label in case of divergence of tensor, now using correct notation for scalar: divFFT(data) instead of 1_divFFT(data)
2012-11-21 10:31:52 +00:00
b988caa6ba
added script to add deviatoric and hydrostatic part of a tensor to ASCII table
2012-11-14 10:46:51 +00:00
1fc59107fa
removed debug statement in averageDown.py, deleted obsolete spectral_iterationCount.py (new solver will report statistics anyway and most probably the current count does not work as the screen output was modified)
2012-10-31 10:06:11 +00:00
b9aa50c59a
improved performance for large packing values
2012-10-26 12:59:43 +00:00
573c4702eb
fixed bug in averageDown.py and added test to check its features
2012-10-17 15:05:26 +00:00
dcff640926
fixed handling of given resolution and dimension
2012-10-17 10:04:13 +00:00
6c7affc43f
improved performance (hopefully)
...
now each new element gets a new ID, running from 1 to N for N elements
2012-10-16 18:06:02 +00:00
1004d744f2
output speed-up by *show_table/*show_model masking
2012-10-05 21:49:33 +00:00
c377dae9a6
added option to create hexagonal grid (2D slices only, according to P. Konijnenbergs experience on 3D ang)
2012-10-05 17:25:54 +00:00
6d97a92913
further improvements on the conversion, seems to work quite good for the 2D case now
2012-09-28 12:10:10 +00:00
6619717baf
improved the conversion of tables to ang files
2012-09-26 12:20:14 +00:00
dc55e30cf1
added "startingIncrement" to spectralOut result interpretation
2012-09-05 15:14:36 +00:00
b7dc9f9944
renamed spectral_buildElements.py to nodesFromCentroids.py and added first simple version of an ascii table to ang converter
2012-08-30 17:01:46 +00:00
3f99d2bb65
further improved prefix handling
2012-08-27 09:39:57 +00:00
96ba5ecae4
moved some more 'mesh related' functions for post processing from math.f90 to mesh.f90
...
f2py functions remaining in math.f90 now uses assumed size arrays in order to have simpler interfaces. This is only working with python 2.7!
changed python pre- and postprocessing scripts.
If you encounter any problems whith core modules, try to remove the old core.so in the lib/damask
2012-08-27 08:04:47 +00:00
975c3437ac
added possibility to use comma in functions, to prevent splitting substituted by ';'. Eg. round(4.021,1) becomes round(4.021;1) in command line call
2012-08-22 17:47:34 +00:00
4cfc302cdd
put prefix in front of the filename, not the directory name
2012-08-03 13:14:51 +00:00
3d7bc40520
added output of defaults for mesh, points, and box to help
2012-08-02 13:22:57 +00:00
13caf2d389
made linear shape reconstruction working again, pretty similar results like corrected FFT reconstruction
2012-07-18 18:39:59 +00:00
b30584b8d7
added "()" to file.close command
2012-07-03 12:33:11 +00:00
925759000c
added option to select data separation character from a choice of:
...
newline
tab (default)
space
2012-06-19 16:00:59 +00:00
376ec2cd94
add option to output double, triple, and quadruple scalars
2012-06-19 15:30:16 +00:00
98b790004a
Adding Second Piola-Kirchhoff data Coloumns (addPK2).
...
Integrating Stress-Strain table Data numerically (integrate.py).
2012-06-12 14:09:16 +00:00
34ef08c762
added unique naming of output file
2012-05-07 20:36:58 +00:00
a84838d3ba
removed erroneous print statements (leftover from debugging)
2012-05-07 19:28:21 +00:00
c9e17319ec
now with correct ID and LF line endings... ;-)
2012-05-07 19:11:46 +00:00
361b7ad398
new script to generate a twoD probability density map from ASCIItable data
2012-05-07 19:09:11 +00:00
c2954a2b33
now all heading labels squeeze out whitespace from their name.
2012-05-05 18:43:48 +00:00
28e9b483ad
corrected wrong byte offset when reading thru 2^31-1-8 four-byte limit
2012-05-01 22:42:45 +00:00
99f2b8603a
new script for reconstruction of elements from F/IP(spectral_buildElements.py), corrected spectral_randomSeeding.py, made post/postResults.py aware of additional header/footer for file positions larger than 2**31-1
2012-04-24 15:09:20 +00:00
335df4346f
deleted accidentally checked in file
2012-04-19 11:52:01 +00:00
31753be16f
updated setup/setup_processing.py with new files
...
added data_readLine(LINE) and data_skipLines(LINES) for ascii table
2012-04-18 11:42:57 +00:00
17f644b261
new scripts to add deformed configuration to ASCII table and for generation of layered 2D geometries (EBSD)
...
addCompatibilityMismatch.py is now using functions from ASCII table library
2012-04-18 09:58:59 +00:00
33ab391c14
added total increment column
2012-03-14 15:05:49 +00:00
ac5b6233e6
initialize lastIncrement to 1
2012-03-14 14:59:20 +00:00
9b17015b5a
added option for nodal quantity output (uses "linear" translation).
...
improved stability when requesting non-existing increments.
2012-03-05 15:22:10 +00:00
dc7234fd02
new option "--suffix" adds a suffix to the filename
2012-02-28 14:24:45 +00:00
10e93244c1
writing info to stdout instead of stderr
2012-02-28 13:21:59 +00:00
fc40291f38
script to add a suffix to specified ASCIItable labels
2012-02-24 08:53:19 +00:00
53d7076d05
remove the info part from ASCIItables
2012-02-23 13:53:50 +00:00
a2b46c8a36
columns can be called by index
...
now pipe-aware...
2012-02-23 13:53:12 +00:00
d68a3d1869
added LF=UNIX to a bunch of files
2012-02-22 13:30:00 +00:00
ff4c281ed2
fixed whitelist/blacklist behavior (blacking out overrides whitelisting)
...
now broken pipes stop script's outputting.
2012-02-16 18:47:07 +00:00
a994b4bcc9
fixed problem when condition was empty
2012-02-16 18:00:40 +00:00
f2729255f8
changed name in install script, small corrections on regex
2012-02-16 15:15:43 +00:00
1bad5bf3c7
removed --count option. introduced 'internal' column #_row_#. adopted polished column head identification developed in filterTable. wiki updated.
2012-02-16 11:56:16 +00:00
9f45cb3745
new option: -c --count: count rows in ascii table and add column "row" with row number
2012-02-16 11:16:36 +00:00
edd5adafd0
now with ID and correct line endings...
2012-02-16 08:58:07 +00:00
37bd65ea34
script to filter an ASCIItable by condition. each row is evaluated against the condition, columns can be black- or white-listed (white wins)...
2012-02-16 08:36:35 +00:00
11d3c7a317
new spectra_parseLog searches through spectral log file and parses all possible output to an ascii table
2012-02-15 20:08:35 +00:00
b153a762cb
now using damask.core.math
2012-02-15 19:34:43 +00:00
bd32f1bf1a
adapting to current format of spectral out file
...
now using regular expressions to match "magic" lines
2012-02-15 12:07:00 +00:00
8671b8ed38
script to delete existing columns from ASCIItable
2012-02-14 12:04:37 +00:00
156ec4582a
polishing, adding _pInt etc. where applicable
...
post_results now handels zero increment different (like FEM, it is always there even if it is not counted)
2012-02-13 14:18:07 +00:00
3228cf563c
fixed bug when column was referenced multiple time in a formula.
...
changed column tagging character to '#' ('$' gave some trouble on the shell...)
2012-02-09 15:46:25 +00:00
0f7c74e02d
set ID flag and line endings
2012-02-09 13:06:22 +00:00
5a6cd1fc8f
slightly prettified handling of finite difference accuracy requesting
2012-02-08 12:01:38 +00:00
56ce779f57
generalized slip system idea of Christoph to field data of "special" dimension (i.e. not 3 or 9).
...
dropped "norm"-suffix from input names of norms.
ASCIItable output is now called "normType" with type being Abs, Frobenius, or Max...
2012-02-08 12:00:31 +00:00
282e4a0360
scripts now figure out dimension and resolution on their own...
2012-02-08 11:18:15 +00:00
9c35e4e148
small polishing of help output.
2012-02-08 09:12:08 +00:00
51e8981ba3
not specifying the location of python executable directly, but rather getting it from $path, otherwise the scripts won't work on every machine
2012-02-07 13:09:10 +00:00
2f07faa0e2
norm capable of using different p-norms (abs norm, frobenius norm, and max norm). also able to handle "slipsystem" outputs (use option -s). number of slip systems can be set by option -i, if not 12 is default.
2012-02-07 13:02:56 +00:00
bffc22fbe1
major restructuring. packing stencil can be shifted to allow for element or nodal value averaging.
2012-02-02 17:12:48 +00:00
9b679c3c0b
switched to damask include instead of outdated damask_tools
2012-01-31 13:08:25 +00:00
27a976c04f
changed to new structure (using damask module)
2012-01-26 12:46:38 +00:00
becb863110
added test for gfortran and gfortran vs intel, renamed intel test to new numbering scheme and changed to new div criterion
...
introduced "try" statement in lib/damask/test/test.py to avoid crash if a test variant fails
2012-01-25 15:14:31 +00:00
7869379d38
output directory (--dir) can now cope with absolute path...
2012-01-20 19:53:56 +00:00
076fef3323
now fully supports output of vector fields (needs POINT data for useful visualization!!)
2012-01-19 20:42:50 +00:00
b134ec7a39
adopted ASCIItable class and checked correctness of results.
2012-01-19 20:41:56 +00:00
7ed2c19d0f
switched importing from "msc_tools" to "damask"
...
patchFrom... now skips blank lines, has more commenting, treats (artificial) bi-crystal (somewhat) gracefully.
2012-01-16 09:32:36 +00:00
55639f3362
added log time scale capability for spectral results
2012-01-12 08:06:25 +00:00
9abf5a110d
changed from old DAMASK (f2py) module to new integrated damask tools
2012-01-06 10:41:23 +00:00
fbe908ccd2
now uses damask.core.math package
2011-12-22 10:42:24 +00:00
f463c2da70
added addCurl.py, not sure if it works correctly. still in old (eq. to addDivergence.py) style
2011-12-21 17:25:31 +00:00
3706bcbc3e
fixed bug
2011-12-20 14:19:01 +00:00
1194deff54
corrected leftover mistake (items --> table.data)
2011-12-15 10:53:20 +00:00
fb7adf7b89
adopted use of general damask package
2011-12-15 08:53:18 +00:00
609175318e
added option for output of colormap palette also as float values 0.0-1.0
2011-12-08 10:02:48 +00:00
ea0fe7b406
corrected 3D visualize (math.f90 part was not working)
...
small polishing of voronoi_tessellation.f90
2011-12-06 17:46:33 +00:00
5ebeb96e85
made DAMASK to work with gfortran:
...
-removed to long lines
-restructured f2py modules and merged make_DAMASK2Python into setup processing
-setup_code.py now sets library path in makefile and asks for compile switches for spectral code
-substituted \ in format strings with $
restructured DAMASK_spectral:
-more logical output and structure of code
-better input for spectral debug parameters
2011-12-06 16:58:17 +00:00
9d3f7b8d3d
adopted ASCII_TABLE class
2011-12-04 09:57:13 +00:00
42c3074821
mini calculator for column-column arithmetic
2011-12-02 15:15:36 +00:00
ace6851389
moved all routines from postprocessingMath to math.90, renamed the module to DAMASK, changed scripts and interfaces accordingly.
...
polished math.f90 (mainly added _pInt/_pReal and intent(in/out))
curl_fft is still a dummy function
2011-12-01 12:01:13 +00:00
e98590d850
adopted ASCII_TABLE class
2011-11-24 17:10:50 +00:00
18a09d7cff
corrected handling of STDIN|STDOUT
...
adopted ASCII_TABLE class
2011-11-24 14:48:02 +00:00
267b8ac30c
started to add curl calculation to postprocessingMath.f90
...
restructured colormap calculation. Algorithm is working now, but input/output still has to be done
2011-11-23 20:08:48 +00:00
48f8d4ccb5
exchanged logic now using ASCII_TABLE class...
2011-11-23 14:54:53 +00:00
f685bbba0e
exchanged location of "graincount" in user block.
...
now matches wiki entry:
1. homogenization block
2. grain block
(grain count
sub-block[s] of crystallite and constitutive)
2011-11-23 09:09:00 +00:00
e8f5996a96
renamed MSC_TOOLS.library_paths to libraryPath, since only single string is returned
2011-11-23 08:25:52 +00:00
21fcd0357e
now subsumed into general postResults functionality
2011-11-22 19:43:37 +00:00
75e20dffb7
corrected version conflict
2011-11-17 21:36:56 +00:00
09799b5b58
compile test is now at least compiling. still comparison to reference results has to be done
2011-11-11 15:06:33 +00:00
06176873e4
after a somewhat lengthy discussion with Philip about usability and developability and general file-naming philosophy we think that we found a compromise on the "to-dot-py or not-to-dot-py" issue:
...
symlinks in DAMASK_ROOT/bin do not carry the extension, but the source files do.
Hope that results in the maximum number of happy developers and users.
2011-11-09 15:37:45 +00:00
98513a4e0d
2011-11-07 18:27:33 +00:00
de96e99bca
corrected determination of restartRead from commandline (now done by FEsolving instead of DAMASK_spectral_interface)
...
recompiled fftw libraries with --enable-shared to make them work with f2py
added draft for compilation test of spectral solver
2011-11-07 18:25:10 +00:00
ba63d3231f
fixed string include
2011-11-04 10:27:41 +00:00
9e3d7d7d6c
made $DAMASK_ROOT definition optional
2011-11-03 13:51:54 +00:00
b9647b2584
moved parts into new "lib" folder
2011-11-03 13:21:11 +00:00
aba7937845
now uses msc_tools method to figure out Mentat path
2011-11-03 13:16:00 +00:00
4e8f36a133
remove $ID$ from first line (I am wondering how this could work...)
2011-11-02 18:49:53 +00:00
7642509a47
first working draft of automated code testing, run_tests.py assumes DAMASK is located under ~/DAMASK/
2011-10-24 16:24:15 +00:00
e7a60988a1
modified exit number extraction
2011-10-24 13:02:08 +00:00
93b2160c2f
extract exit number from MSC out-file. Other MSC utility functions can also go into MSC_TOOLS class.
2011-10-24 12:59:46 +00:00
414bacb096
deleted unused vars. changed linking library info/path
2011-10-20 12:47:57 +00:00
ed08dfc2be
added option to select between cell-centered (as before) or vertex-centered data
2011-10-20 12:29:59 +00:00
c78227cec1
added option to skip data points along x,y,z in case they are periodic images. relevant for vertex-centered data for which outer surface data is doubled, i.e. data(0,0,0) == data(Nx,Ny,Nz)
2011-10-20 12:28:39 +00:00
3a0911ca89
added option to output RGB palette on terminal
...
number of colors is now variable (default 32)
warning issued if MSC path not valid
new "redblue" sym colormap
2011-10-20 11:59:15 +00:00
Philip Eisenlohr