223031012
/
DAMASK_EICMD
mirror of https://github.com/achalhp/DAMASK_EICMD.git
1
0
Fork 0
Code Issues Projects Releases Wiki Activity

removed explicit default setting: type='string' and action='store'

This commit is contained in:
Martin Diehl 2014-09-12 14:14:55 +00:00
parent fd1f26af1c
commit afb9a2186b
48 changed files with 155 additions and 155 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

2
processing/misc/yieldSurface.py
View File

@ -189,7 +189,7 @@ def doSim(delay,thread):
while line < lines:
if table.data[line,9]>= threshold:
upper,lower = table.data[line,9],table.data[line-1,9] # values for linear interpolation
yieldStress[i] = table.data[line-1 0:9] * (upper-threshold)/(upper-lower) \
yieldStress[i] = table.data[line-1,0:9] * (upper-threshold)/(upper-lower) \
+ table.data[line ,0:9] * (threshold-lower)/(upper-lower) # linear interpolation of stress values
break
else:

22
processing/post/3Dvisualize.py
View File

@ -263,19 +263,19 @@ Coordinates are taken from (consecutive) x, y, and z columns.
""", version = scriptID)
sepChoices = ['n','t','s']
parser.add_option('-s', '--scalar', dest='scalar', action='extend', type='string', metavar = '<string LIST>',
parser.add_option('-s', '--scalar', dest='scalar', action='extend', metavar = '<string LIST>',
help='list of single scalars to visualize')
parser.add_option( '--double', dest='double', action='extend', type='string', metavar = '<string LIST>',
parser.add_option( '--double', dest='double', action='extend', metavar = '<string LIST>',
help='list of two scalars to visualize')
parser.add_option( '--triple', dest='triple', action='extend', type='string', metavar = '<string LIST>',
parser.add_option( '--triple', dest='triple', action='extend', metavar = '<string LIST>',
help='list of three scalars to visualize')
parser.add_option( '--quadruple', dest='quadruple', action='extend', type='string', metavar = '<string LIST>',
parser.add_option( '--quadruple', dest='quadruple', action='extend', metavar = '<string LIST>',
help='list of four scalars to visualize')
parser.add_option('-v', '--vector', dest='vector', action='extend', type='string', metavar = '<string LIST>',
parser.add_option('-v', '--vector', dest='vector', action='extend', metavar = '<string LIST>',
help='list of vectors to visualize')
parser.add_option('-t', '--tensor', dest='tensor', action='extend', type='string', metavar = '<string LIST>',
parser.add_option('-t', '--tensor', dest='tensor', action='extend', metavar = '<string LIST>',
help='list of tensors to visualize')
parser.add_option('-d', '--deformation', dest='defgrad', action='store', type='string', metavar = 'string',
parser.add_option('-d', '--deformation', dest='defgrad', metavar = 'string',
help='heading of deformation gradient columns [%default]')
parser.add_option('--reference', dest='undeformed', action='store_true',
help='map results to reference (undeformed) configuration [%default]')
@ -291,15 +291,15 @@ parser.add_option('--points', dest='output_points', action='store_true',
help='produce VTK points file [%default]')
parser.add_option('--nopoints', dest='output_points', action='store_false',
help='omit VTK points file')
parser.add_option('--separator', dest='separator', action='store', type='choice', choices=sepChoices, metavar='string',
parser.add_option('--separator', dest='separator', type='choice', choices=sepChoices, metavar='string',
help='data separator (%s) [t]'%(','.join(map(str,sepChoices))))
parser.add_option('--scaling', dest='scaling', action='extend', type='string',
help='scaling of fluctuation', metavar = '<float LIST>')
parser.add_option('-u', '--unitlength', dest='unitlength', action='store', type='float', metavar = 'float',
parser.add_option('-u', '--unitlength', dest='unitlength', type='float', metavar = 'float',
help='set unit length for 2D model [%default]')
parser.add_option('--filenodalcoords', dest='filenodalcoords', action='store', type='string', metavar = 'string',
parser.add_option('--filenodalcoords', dest='filenodalcoords', metavar = 'string',
help='ASCII table containing nodal coords')
parser.add_option('--labelnodalcoords', dest='labelnodalcoords', action='store', type='string', nargs=3,
parser.add_option('--labelnodalcoords', dest='labelnodalcoords', nargs=3,
help='labels of nodal coords in ASCII table %default', metavar = 'string string string')
parser.add_option('-l', '--linear', dest='linearreconstruction', action='store_true',
help='use linear reconstruction of geometry [%default]')

4
processing/post/addCalculation.py
View File

@ -26,9 +26,9 @@ Example: distance to IP coordinates -- "math.sqrt( #ip.x#**2 + #ip.y#**2 + round
""", version = scriptID)
parser.add_option('-l','--label', dest='labels', action='extend', type='string', metavar='<string LIST>',
parser.add_option('-l','--label', dest='labels', action='extend', metavar='<string LIST>',
help='(list of) new column labels')
parser.add_option('-f','--formula', dest='formulas', action='extend', type='string', metavar='<string LIST>',
parser.add_option('-f','--formula', dest='formulas', action='extend', metavar='<string LIST>',
help='(list of) formulas corresponding to labels')
parser.set_defaults(labels= [])
parser.set_defaults(formulas= [])

4
processing/post/addCauchy.py
View File

@ -19,9 +19,9 @@ Add column(s) containing Cauchy stress based on given column(s) of deformation g
""", version = scriptID)
parser.add_option('-f','--defgrad', dest='defgrad', action='store', type='string', metavar='string',
parser.add_option('-f','--defgrad', dest='defgrad', metavar='string',
help='heading of columns containing deformation gradient [%default]')
parser.add_option('-p','--stress', dest='stress', action='store', type='string', metavar='string',
parser.add_option('-p','--stress', dest='stress', metavar='string',
help='heading of columns containing first Piola--Kirchhoff stress [%default]')
parser.set_defaults(defgrad = 'f')
parser.set_defaults(stress = 'p')

6
processing/post/addCauchyX.py
View File

@ -38,11 +38,11 @@ deformation gradient and first Piola--Kirchhoff stress.
)
parser.add_option('-f','--defgrad', dest='defgrad', type='string', \
parser.add_option('-f','--defgrad', dest='defgrad', \
help='heading of columns containing deformation gradient [%default]')
parser.add_option('-p','--stress', dest='stress', type='string', \
parser.add_option('-p','--stress', dest='stress', \
help='heading of columns containing first Piola--Kirchhoff stress [%default]')
parser.add_option('-o','--output', dest='output', type='string', \
parser.add_option('-o','--output', dest='output', \
help='group containing requested data [%default]')
parser.set_defaults(defgrad = 'f')
parser.set_defaults(stress = 'p')

4
processing/post/addCompatibilityMismatch.py
View File

@ -24,9 +24,9 @@ parser.add_option('--no-shape','-s', dest='noShape', action='store_false',
help='do not calcuate shape mismatch [%default]')
parser.add_option('--no-volume','-v', dest='noVolume', action='store_false',
help='do not calculate volume mismatch [%default]')
parser.add_option('-c','--coordinates', dest='coords', action='store', type='string', metavar='string',
parser.add_option('-c','--coordinates', dest='coords', metavar='string',
help='column heading for coordinates [%default]')
parser.add_option('-f','--defgrad', dest='defgrad', action='store', type='string', metavar='string ',
parser.add_option('-f','--defgrad', dest='defgrad', metavar='string ',
help='column heading for coordinates [%defgrad]')
parser.set_defaults(noVolume = False)
parser.set_defaults(noShape = False)

6
processing/post/addCurl.py
View File

@ -21,11 +21,11 @@ Deals with both vector- and tensor-valued fields.
""", version = scriptID)
parser.add_option('-c','--coordinates', dest='coords', action='store', type='string', metavar='string',
parser.add_option('-c','--coordinates', dest='coords', metavar='string',
help='column heading for coordinates [%default]')
parser.add_option('-v','--vector', dest='vector', action='extend', type='string', metavar='<string LIST>',
parser.add_option('-v','--vector', dest='vector', action='extend', metavar='<string LIST>',
help='heading of columns containing vector field values')
parser.add_option('-t','--tensor', dest='tensor', action='extend', type='string', metavar='<string LIST>',
parser.add_option('-t','--tensor', dest='tensor', action='extend', metavar='<string LIST>',
help='heading of columns containing tensor field values')
parser.set_defaults(coords = 'ip')
parser.set_defaults(vector = [])

4
processing/post/addDeformedConfiguration.py
View File

@ -20,9 +20,9 @@ Operates on periodic ordered three-dimensional data sets.
""", version = scriptID)
parser.add_option('-c','--coordinates', dest='coords', action='store', type='string', metavar='string',
parser.add_option('-c','--coordinates', dest='coords', metavar='string',
help='column heading for coordinates [%default]')
parser.add_option('-f','--defgrad', dest='defgrad', action='store', type='string', metavar='string',
parser.add_option('-f','--defgrad', dest='defgrad', metavar='string',
help='heading of columns containing tensor field values')
parser.add_option('-l', '--linear', dest='linearreconstruction', action='store_true',
help='use linear reconstruction of geometry [%default]')

2
processing/post/addDeterminant.py
View File

@ -26,7 +26,7 @@ Add column(s) containing determinant of requested tensor column(s).
""", version = scriptID)
parser.add_option('-t','--tensor', dest='tensor', action='extend', type='string', metavar='<string LIST>',
parser.add_option('-t','--tensor', dest='tensor', action='extend', metavar='<string LIST>',
help='heading of columns containing tensor field values')
parser.set_defaults(tensor = [])

8
processing/post/addDivergence.py
View File

@ -22,15 +22,15 @@ Deals with both vector- and tensor-valued fields.
""", version = scriptID)
accuracyChoices = ['2','4','6','8']
parser.add_option('--fdm', dest='accuracy', action='extend', type='string', metavar='<int LIST>',
parser.add_option('--fdm', dest='accuracy', action='extend', metavar='<int LIST>',
help='degree of central difference accuracy (%s)'%(','.join(accuracyChoices)))
parser.add_option('--fft', dest='fft', action='store_true',
help='calculate divergence in Fourier space')
parser.add_option('-c','--coordinates', dest='coords', action='store', type='string', metavar = 'string',
parser.add_option('-c','--coordinates', dest='coords', metavar = 'string',
help='column heading for coordinates [%default]')
parser.add_option('-v','--vector', dest='vector', action='extend', type='string', metavar='<string LIST>',
parser.add_option('-v','--vector', dest='vector', action='extend', metavar='<string LIST>',
help='heading of columns containing vector field values')
parser.add_option('-t','--tensor', dest='tensor', action='extend', type='string', metavar='<string LIST>',
parser.add_option('-t','--tensor', dest='tensor', action='extend', metavar='<string LIST>',
help='heading of columns containing tensor field values')
parser.set_defaults(coords = 'ip')
parser.set_defaults(accuracy = [])

4
processing/post/addEhkl.py
View File

@ -36,10 +36,10 @@ Add column(s) containing directional stiffness based on given cubic stiffness va
""", version = scriptID)
parser.add_option('-c','--stiffness', dest='vector', action='extend', type='string', metavar='<string LIST>',
parser.add_option('-c','--stiffness', dest='vector', action='extend', metavar='<string LIST>',
help='heading of column containing C11 (followed by C12, C44) field values')
parser.add_option('-d','--direction', \
'--hkl', dest='hkl', action='store', type='int', nargs=3, metavar='int int int',
'--hkl', dest='hkl', type='int', nargs=3, metavar='int int int',
help='direction of elastic modulus %default')
parser.set_defaults(vector = [])
parser.set_defaults(hkl = [1,1,1])

8
processing/post/addEuclideanDistance.py
View File

@ -87,13 +87,13 @@ Add column(s) containing Euclidean distance to grain structural features: bounda
""", version = scriptID)
parser.add_option('-c','--coordinates', dest='coords', action='store', type='string', metavar='string',
parser.add_option('-c','--coordinates', dest='coords', metavar='string',
help='column heading for coordinates [%default]')
parser.add_option('-i','--identifier', dest='id', action='store', type='string', metavar = 'string',
parser.add_option('-i','--identifier', dest='id', metavar = 'string',
help='heading of column containing grain identifier [%default]')
parser.add_option('-t','--type', dest='type', action='extend', type='string', metavar='<string LIST>',
parser.add_option('-t','--type', dest='type', action='extend', metavar='<string LIST>',
help='feature type (%s)'%(', '.join(map(lambda x:', '.join([x['name']]),features))))
parser.add_option('-n','--neighborhood',dest='neigborhood', action='store', type='choice',
parser.add_option('-n','--neighborhood',dest='neigborhood', type='choice',
choices=neighborhoods.keys(), metavar='string',
help='type of neighborhood (%s) [neumann]'%(', '.join(neighborhoods.keys())))
parser.set_defaults(type = [])

16
processing/post/addIPFcolor.py
View File

@ -18,24 +18,24 @@ Add RGB color value corresponding to TSL-OIM scheme for inverse pole figures.
""", version = scriptID)
parser.add_option('-p', '--pole', dest='pole', action='store', type='float', nargs=3, metavar='float float float',
parser.add_option('-p', '--pole', dest='pole', type='float', nargs=3, metavar='float float float',
help = 'lab frame direction for inverse pole figure %default')
parser.add_option('-s', '--symmetry', dest='symmetry', action='store', type='choice',
parser.add_option('-s', '--symmetry', dest='symmetry', type='choice',
choices=damask.Symmetry.lattices[1:], metavar='string',
help = 'crystal symmetry (%s) [cubic]'%(', '.join(damask.Symmetry.lattices[1:])))
parser.add_option('-e', '--eulers', dest='eulers', action='store', type='string', metavar='string',
parser.add_option('-e', '--eulers', dest='eulers', metavar='string',
help = 'Euler angles label')
parser.add_option('-d', '--degrees', dest='degrees', action='store_true',
help = 'Euler angles are given in degrees [%default]')
parser.add_option('-m', '--matrix', dest='matrix', action='store', type='string', metavar='string',
parser.add_option('-m', '--matrix', dest='matrix', metavar='string',
help = 'orientation matrix label')
parser.add_option('-a', dest='a', action='store', type='string', metavar='string',
parser.add_option('-a', dest='a', metavar='string',
help = 'crystal frame a vector label')
parser.add_option('-b', dest='b', action='store', type='string', metavar='string',
parser.add_option('-b', dest='b', metavar='string',
help = 'crystal frame b vector label')
parser.add_option('-c', dest='c', action='store', type='string', metavar='string',
parser.add_option('-c', dest='c', metavar='string',
help = 'crystal frame c vector label')
parser.add_option('-q', '--quaternion', dest='quaternion', action='store', type='string', metavar='string',
parser.add_option('-q', '--quaternion', dest='quaternion', metavar='string',
help = 'quaternion label')
parser.set_defaults(pole = [0.0,0.0,1.0])
parser.set_defaults(symmetry = 'cubic')

14
processing/post/addMapped.py
View File

@ -17,19 +17,19 @@ Add data in column(s) of second ASCIItable selected from row that is given by th
""", version = scriptID)
parser.add_option('-a','--asciitable', dest='asciitable', action='store', type='string', metavar='string',
parser.add_option('-a','--asciitable', dest='asciitable', metavar='string',
help='mapped ASCIItable')
parser.add_option('-c','--map', dest='map', action='store', type='string', metavar='string',
parser.add_option('-c','--map', dest='map', metavar='string',
help='heading of column containing row mapping')
parser.add_option('-o','--offset', dest='offset', action='store', type='int', metavar='int',
parser.add_option('-o','--offset', dest='offset', type='int', metavar='int',
help='offset between mapped column value and row')
parser.add_option('-v','--vector', dest='vector', action='extend', type='string', metavar='<string LIST>',
parser.add_option('-v','--vector', dest='vector', action='extend', metavar='<string LIST>',
help='heading of columns containing vector field values')
parser.add_option('-t','--tensor', dest='tensor', action='extend', type='string', metavar='<string LIST>',
parser.add_option('-t','--tensor', dest='tensor', action='extend', metavar='<string LIST>',
help='heading of columns containing tensor field values')
parser.add_option('-s','--special', dest='special', action='extend', type='string', metavar='<string LIST>',
parser.add_option('-s','--special', dest='special', action='extend', metavar='<string LIST>',
help='heading of columns containing field values of special dimension')
parser.add_option('-d','--dimension', dest='N', action='store', type='int', metavar='int',
parser.add_option('-d','--dimension', dest='N', type='int', metavar='int',
help='dimension of special field values [%default]')
parser.set_defaults(vector = [])
parser.set_defaults(tensor = [])

4
processing/post/addMises.py
View File

@ -29,9 +29,9 @@ Add vonMises equivalent values for symmetric part of requested strains and/or st
""", version = scriptID)
parser.add_option('-e','--strain', dest='strain', action='extend', type='string', metavar='<string LIST>',
parser.add_option('-e','--strain', dest='strain', action='extend', metavar='<string LIST>',
help='heading(s) of columns containing strain tensors')
parser.add_option('-s','--stress', dest='stress', action='extend', type='string', metavar='<string LIST>',
parser.add_option('-s','--stress', dest='stress', action='extend', metavar='<string LIST>',
help='heading(s) of columns containing stress tensors')
parser.set_defaults(strain = [])
parser.set_defaults(stress = [])

10
processing/post/addNorm.py
View File

@ -29,15 +29,15 @@ Add column(s) containing norm of requested column(s) being either vectors or ten
""", version = scriptID)
normChoices = ['abs','frobenius','max']
parser.add_option('-n','--norm', dest='norm', action='store', type='choice', choices=normChoices, metavar='string',
parser.add_option('-n','--norm', dest='norm', type='choice', choices=normChoices, metavar='string',
help='type of element-wise p-norm (%s) [frobenius]'%(','.join(map(str,normChoices))))
parser.add_option('-v','--vector', dest='vector', action='extend', type='string', metavar='<string LIST>',
parser.add_option('-v','--vector', dest='vector', action='extend', metavar='<string LIST>',
help='heading of columns containing vector field values')
parser.add_option('-t','--tensor', dest='tensor', action='extend', type='string', metavar='<string LIST>',
parser.add_option('-t','--tensor', dest='tensor', action='extend', metavar='<string LIST>',
help='heading of columns containing tensor field values')
parser.add_option('-s','--special', dest='special', action='extend', type='string', metavar='<string LIST>',
parser.add_option('-s','--special', dest='special', action='extend', metavar='<string LIST>',
help='heading of columns containing field values of special dimension')
parser.add_option('-d','--dimension', dest='N', action='store', type='int', metavar='int',
parser.add_option('-d','--dimension', dest='N', type='int', metavar='int',
help='dimension of special field values [%default]')
parser.set_defaults(norm = 'frobenius')
parser.set_defaults(vector = [])

18
processing/post/addOrientations.py
View File

@ -20,26 +20,26 @@ Orientation is given by quaternion, Euler angles, rotation matrix, or crystal fr
""", version = scriptID)
outputChoices = ['quaternion','eulers']
parser.add_option('-o', '--output', dest='output', action='extend', type='string', metavar='<string LIST>',
parser.add_option('-o', '--output', dest='output', action='extend', metavar='<string LIST>',
help = 'output orientation formats (%s)'%(','.join(outputChoices)))
parser.add_option('-s', '--symmetry', dest='symmetry', action='store', type='choice',
parser.add_option('-s', '--symmetry', dest='symmetry', type='choice',
choices=damask.Symmetry.lattices[1:], metavar='string',
help = 'crystal symmetry (%s) [cubic]'%(', '.join(damask.Symmetry.lattices[1:])))
parser.add_option('-r', '--rotation', dest='rotation', action='store', type='float', nargs=4, metavar='float float float float',
parser.add_option('-r', '--rotation', dest='rotation', type='float', nargs=4, metavar='float float float float',
help = 'angle and axis to (pre)rotate orientation')
parser.add_option('-e', '--eulers', dest='eulers', action='store', type='string', metavar='string',
parser.add_option('-e', '--eulers', dest='eulers', metavar='string',
help = 'Euler angles label')
parser.add_option('-d', '--degrees', dest='degrees', action='store_true',
help = 'Euler angles are given in degrees [%default]')
parser.add_option('-m', '--matrix', dest='matrix', action='store', type='string', metavar='string',
parser.add_option('-m', '--matrix', dest='matrix', metavar='string',
help = 'orientation matrix label')
parser.add_option('-a', dest='a', action='store', type='string', metavar='string',
parser.add_option('-a', dest='a', metavar='string',
help = 'crystal frame a vector label')
parser.add_option('-b', dest='b', action='store', type='string', metavar='string',
parser.add_option('-b', dest='b', metavar='string',
help = 'crystal frame b vector label')
parser.add_option('-c', dest='c', action='store', type='string', metavar='string',
parser.add_option('-c', dest='c', metavar='string',
help = 'crystal frame c vector label')
parser.add_option('-q', '--quaternion', dest='quaternion', action='store', type='string', metavar='string',
parser.add_option('-q', '--quaternion', dest='quaternion', metavar='string',
help = 'quaternion label')
parser.set_defaults(output = [])
parser.set_defaults(symmetry = 'cubic')

4
processing/post/addPK2.py
View File

@ -19,9 +19,9 @@ Add column(s) containing Second Piola--Kirchhoff stress based on given column(s)
""", version = scriptID)
parser.add_option('-f','--defgrad', dest='defgrad', action='store', type='string', metavar='string',
parser.add_option('-f','--defgrad', dest='defgrad', metavar='string',
help='heading of columns containing deformation gradient [%default]')
parser.add_option('-p','--stress', dest='stress', action='store', type='string', metavar='string',
parser.add_option('-p','--stress', dest='stress', metavar='string',
help='heading of columns containing first Piola--Kirchhoff stress [%default]')
parser.set_defaults(defgrad = 'f')
parser.set_defaults(stress = 'p')

14
processing/post/addSchmidfactors.py
View File

@ -247,20 +247,20 @@ Add columns listing Schmid factors (and optional trace vector of selected system
""", version = scriptID)
parser.add_option('-l','--lattice', dest='lattice', action='store', type='choice',
parser.add_option('-l','--lattice', dest='lattice', type='choice',
choices=('fcc','bcc','hex'), metavar='string',
help="type of neighborhood ('fcc','bcc','hex') [%default]")
parser.add_option('--direction', dest='forcedirection', action='store', type='int', nargs=3, metavar='int int int',
parser.add_option('--direction', dest='forcedirection', type='int', nargs=3, metavar='int int int',
help='force direction in lab coordinates %default')
parser.add_option('-n','--normal', dest='stressnormal', action='store', type='int', nargs=3, metavar='int int int',
parser.add_option('-n','--normal', dest='stressnormal', type='int', nargs=3, metavar='int int int',
help='stress plane normal in lab coordinates ')
parser.add_option('--trace', dest='traceplane', action='store', type='int', nargs=3, metavar='int int int',
parser.add_option('--trace', dest='traceplane', type='int', nargs=3, metavar='int int int',
help='normal (in lab coordinates) of plane on which the plane trace of the Schmid factor(s) is reported')
parser.add_option('--covera', dest='CoverA', action='store', type='float', metavar='float',
parser.add_option('--covera', dest='CoverA', type='float', metavar='float',
help='C over A ratio for hexagonal systems')
parser.add_option('-r','--rank', dest='rank', action='store', type='int', nargs=3, metavar='int int int',
parser.add_option('-r','--rank', dest='rank', type='int', nargs=3, metavar='int int int',
help="report trace of r'th highest Schmid factor [%default]")
parser.add_option('-e', '--eulers', dest='eulers', action='store', type='string', metavar='string',
parser.add_option('-e', '--eulers', dest='eulers', metavar='string',
help='Euler angles label')
parser.add_option('-d', '--degrees', dest='degrees', action='store_true',
help = 'Euler angles are given in degrees [%default]')

2
processing/post/addSpectralDecomposition.py
View File

@ -19,7 +19,7 @@ Add column(s) containing eigenvalues and eigenvectors of requested tensor column
""", version = scriptID)
parser.add_option('-t','--tensor', dest='tensor', action='extend', type='string', metavar='<string LIST>',
parser.add_option('-t','--tensor', dest='tensor', action='extend', metavar='<string LIST>',
help='heading of columns containing tensor field values')
parser.set_defaults(tensor = [])

2
processing/post/addStrainTensors.py
View File

@ -40,7 +40,7 @@ parser.add_option('-b','-1','--biot', dest='biot', action='store_true',
help='calculate biot strain tensor [%default]')
parser.add_option('-g','-2','--green', dest='green', action='store_true',
help='calculate green strain tensor [%default]')
parser.add_option('-f','--defgrad', dest='defgrad', action='extend', type='string', metavar = '<string LIST>',
parser.add_option('-f','--defgrad', dest='defgrad', action='extend', metavar = '<string LIST>',
help='heading(s) of columns containing deformation tensor values %default')
parser.set_defaults(right = False)
parser.set_defaults(left = False)

10
processing/post/averageDown.py
View File

@ -18,15 +18,15 @@ Average each data block of size 'packing' into single values thus reducing the f
""", version = scriptID)
parser.add_option('-c','--coordinates', dest='coords', action='store', type='string', metavar='string',
parser.add_option('-c','--coordinates', dest='coords', metavar='string',
help='column heading for coordinates [%default]')
parser.add_option('-p','--packing', dest='packing', action='store', type='int', nargs=3, metavar='int int int',
parser.add_option('-p','--packing', dest='packing', type='int', nargs=3, metavar='int int int',
help='size of packed group %default')
parser.add_option('--shift', dest='shift', action='store', type='int', nargs=3, metavar='int int int',
parser.add_option('--shift', dest='shift', type='int', nargs=3, metavar='int int int',
help='shift vector of packing stencil %default')
parser.add_option('-g', '--grid', dest='grid', action='store', type='int', nargs=3, metavar='int int int',
parser.add_option('-g', '--grid', dest='grid', type='int', nargs=3, metavar='int int int',
help='grid in x,y,z [autodetect]')
parser.add_option('-s', '--size', dest='size', action='store', type='float', nargs=3, metavar='float float float',
parser.add_option('-s', '--size', dest='size', type='float', nargs=3, metavar='float float float',
help='size in x,y,z [autodetect]')
parser.set_defaults(coords = 'ip')
parser.set_defaults(packing = [2,2,2])

14
processing/post/binXY.py
View File

@ -18,19 +18,19 @@ Produces a binned grid of two columns from an ASCIItable, i.e. a two-dimensional
""", version = scriptID)
parser.add_option('-d','--data', dest='data', action='store', nargs=2, type='int', metavar='int int',
parser.add_option('-d','--data', dest='data', nargs=2, type='int', metavar='int int',
help='columns containing x and y %default')
parser.add_option('-w','--weight', dest='weight', action='store', metavar='int',
parser.add_option('-w','--weight', dest='weight', metavar='int',
help='column containing weight of (x,y) point [%default]')
parser.add_option('-b','--bins', dest='bins', action='store', nargs=2, type='int', metavar='int int',
parser.add_option('-b','--bins', dest='bins', nargs=2, type='int', metavar='int int',
help='number of bins in x and y direction %default')
parser.add_option('-t','--type', dest='type', action='store', nargs=3, type='string', metavar='string string string',
parser.add_option('-t','--type', dest='type', nargs=3, metavar='string string string',
help='type (linear/log) of x, y, and z axis [linear]')
parser.add_option('-x','--xrange', dest='xrange', action='store', nargs=2, type='float', metavar='float float',
parser.add_option('-x','--xrange', dest='xrange', nargs=2, type='float', metavar='float float',
help='value range in x direction [auto]')
parser.add_option('-y','--yrange', dest='yrange', action='store', nargs=2, type='float', metavar='float float',
parser.add_option('-y','--yrange', dest='yrange', nargs=2, type='float', metavar='float float',
help='value range in y direction [auto]')
parser.add_option('-z','--zrange', dest='zrange', action='store', nargs=2, type='float', metavar='float float',
parser.add_option('-z','--zrange', dest='zrange', nargs=2, type='float', metavar='float float',
help='value range in z direction [auto]')
parser.add_option('-i','--invert', dest='invert', action='store_true',
help='invert probability density [%default]')

8
processing/post/blowUp.py
View File

@ -19,13 +19,13 @@ to resolution*packing.
""", version = scriptID)
parser.add_option('-c','--coordinates', dest='coords', action='store', type='string', metavar='string',
parser.add_option('-c','--coordinates', dest='coords', metavar='string',
help='column heading for coordinates [%default]')
parser.add_option('-p','--packing', dest='packing', action='store', type='int', nargs=3, metavar='int int int',
parser.add_option('-p','--packing', dest='packing', type='int', nargs=3, metavar='int int int',
help='dimension of packed group %default')
parser.add_option('-g','--grid', dest='resolution', action='store', type='int', nargs=3, metavar='int int int',
parser.add_option('-g','--grid', dest='resolution', type='int', nargs=3, metavar='int int int',
help='resolution in x,y,z [autodetect]')
parser.add_option('-s','--size', dest='dimension', action='store', type='float', nargs=3, metavar='int int int',
parser.add_option('-s','--size', dest='dimension', type='float', nargs=3, metavar='int int int',
help='dimension in x,y,z [autodetect]')
parser.set_defaults(coords = 'ip')
parser.set_defaults(packing = [2,2,2])

8
processing/post/deleteColumn.py
View File

@ -17,13 +17,13 @@ Remove column(s) containing scalar, vectorial, and/or tensorial data.
""", version = scriptID)
parser.add_option('-v','--vector', dest='vector', action='extend', type='string', metavar='<string LIST>',
parser.add_option('-v','--vector', dest='vector', action='extend', metavar='<string LIST>',
help='heading of columns containing 3x1 vector field values')
parser.add_option('-t','--tensor', dest='tensor', action='extend', type='string', metavar='<string LIST>',
parser.add_option('-t','--tensor', dest='tensor', action='extend', metavar='<string LIST>',
help='heading of columns containing 3x3 tensor field values')
parser.add_option('-s','--special', dest='special', action='extend', type='string', metavar='<string LIST>',
parser.add_option('-s','--special', dest='special', action='extend', metavar='<string LIST>',
help='heading of columns containing field values of special dimension')
parser.add_option('-d','--dimension', dest='N', action='store', type='int', metavar='int',
parser.add_option('-d','--dimension', dest='N', type='int', metavar='int',
help='dimension of special field values [%default]')
parser.set_defaults(vector = [])

6
processing/post/filterTable.py
View File

@ -21,11 +21,11 @@ All rows where label 'foo' equals 'bar' -- " #foo# == \"bar\" "
""", version = scriptID)
parser.add_option('-w','--white', dest='whitelist', action='extend', type='string', metavar='<string LIST>',
parser.add_option('-w','--white', dest='whitelist', action='extend', metavar='<string LIST>',
help='white list of column labels (a,b,c,...)')
parser.add_option('-b','--black', dest='blacklist', action='extend', type='string', metavar='<string LIST>',
parser.add_option('-b','--black', dest='blacklist', action='extend', metavar='<string LIST>',
help='black list of column labels (a,b,c,...)')
parser.add_option('-c','--condition', dest='condition', type='string', metavar='string',
parser.add_option('-c','--condition', dest='condition', metavar='string',
help='condition to filter rows')
parser.set_defaults(whitelist = [])

6
processing/post/marc_extractData.py
View File

@ -305,11 +305,11 @@ parser.add_option('-t','--type', dest='type', type='choice', choices=['ipbased',
group_material = OptionGroup(parser,'Material identifier')
group_material.add_option('--homogenization', dest='homog', type='string', \
group_material.add_option('--homogenization', dest='homog', \
help='homogenization identifier (as string or integer [%default])', metavar='<ID>')
group_material.add_option('--crystallite', dest='cryst', type='string', \
group_material.add_option('--crystallite', dest='cryst', \
help='crystallite identifier (as string or integer [%default])', metavar='<ID>')
group_material.add_option('--phase', dest='phase', type='string', \
group_material.add_option('--phase', dest='phase', \
help='phase identifier (as string or integer [%default])', metavar='<ID>')
parser.add_option_group(group_material)

28
processing/post/postResults.py
View File

@ -682,44 +682,44 @@ parser.add_option('-r','--range', dest='range', type='int', nargs=3, \
help='range of positions (or increments) to output (start, end, step) [all]')
parser.add_option('--increments', action='store_true', dest='getIncrements', \
help='switch to increment range [%default]')
parser.add_option('-m','--map', dest='func', type='string', \
parser.add_option('-m','--map', dest='func', \
help='data reduction mapping ["%default"] out of min, max, avg, avgabs, sum, sumabs or user-lambda')
parser.add_option('-p','--type', dest='filetype', type='string', \
parser.add_option('-p','--type', dest='filetype', \
help = 'type of result file [auto]')
group_material = OptionGroup(parser,'Material identifier')
group_material.add_option('--homogenization', dest='homog', type='string', \
group_material.add_option('--homogenization', dest='homog', \
help='homogenization identifier (as string or integer [%default])', metavar='<ID>')
group_material.add_option('--crystallite', dest='cryst', type='string', \
group_material.add_option('--crystallite', dest='cryst', \
help='crystallite identifier (as string or integer [%default])', metavar='<ID>')
group_material.add_option('--phase', dest='phase', type='string', \
group_material.add_option('--phase', dest='phase', \
help='phase identifier (as string or integer [%default])', metavar='<ID>')
group_special = OptionGroup(parser,'Special outputs')
group_special.add_option('-t','--time', action='store_true', dest='time', \
help='output time of increment [%default]')
group_special.add_option('-f','--filter', dest='filter', type='string', \
group_special.add_option('-f','--filter', dest='filter', \
help='condition(s) to filter results [%default]', metavar='<CODE>')
group_special.add_option('--separation', action='extend', dest='sep', type='string', \
group_special.add_option('--separation', action='extend', dest='sep', \
help='properties to separate results [%default]', metavar='<LIST>')
group_special.add_option('--sort', action='extend', dest='sort', type='string', \
group_special.add_option('--sort', action='extend', dest='sort', \
help='properties to sort results [%default]', metavar='<LIST>')
group_general = OptionGroup(parser,'General outputs')
group_general.add_option('--ns', action='extend', dest='nodalScalar', type='string', \
group_general.add_option('--ns', action='extend', dest='nodalScalar', \
help='nodal scalars to extract', metavar='<LIST>')
group_general.add_option('--es', action='extend', dest='elemScalar', type='string', \
group_general.add_option('--es', action='extend', dest='elemScalar', \
help='elemental scalars to extract', metavar='<LIST>')
group_general.add_option('--et', action='extend', dest='elemTensor', type='string', \
group_general.add_option('--et', action='extend', dest='elemTensor', \
help='elemental tensors to extract', metavar='<LIST>')
group_general.add_option('--ho', action='extend', dest='homogenizationResult', type='string', \
group_general.add_option('--ho', action='extend', dest='homogenizationResult', \
help='homogenization results to extract', metavar='<LIST>')
group_general.add_option('--cr', action='extend', dest='crystalliteResult', type='string', \
group_general.add_option('--cr', action='extend', dest='crystalliteResult', \
help='crystallite results to extract', metavar='<LIST>')
group_general.add_option('--co', action='extend', dest='constitutiveResult', type='string', \
group_general.add_option('--co', action='extend', dest='constitutiveResult', \
help='constitutive results to extract', metavar='<LIST>')
parser.add_option_group(group_material)

2
processing/post/scaleData.py
View File

@ -19,7 +19,7 @@ Uniformly scale values scalar/special, vector, or tensor columns by given factor
""", version = scriptID)
parser.add_option('-s','--special', dest='special', action='extend', type='string', metavar='<string LIST>',
parser.add_option('-s','--special', dest='special', action='extend', metavar='<string LIST>',
help='heading of columns containing field values of special dimension')
parser.add_option('-d','--dimension',dest='N', type='int', metavar='int',
help='dimension of special field values [%default]')

2
processing/post/shiftData.py
View File

@ -19,7 +19,7 @@ Shift values of scalar/special, vector, or tensor columns by given offset.
""", version = scriptID)
parser.add_option('-s','--special', dest='special', action='extend', type='string', metavar='<string LIST>',
parser.add_option('-s','--special', dest='special', action='extend', metavar='<string LIST>',
help='heading of columns containing field values of special dimension')
parser.add_option('-d','--dimension',dest='N', type='int', metavar='int',
help='dimension of special field values [%default]')

2
processing/post/sortTable.py
View File

@ -40,7 +40,7 @@ With coordinates in columns "x", "y", and "z"; sorting with x slowest and z fast
)
parser.add_option('-l','--label', dest='keys', action='extend', type='string', metavar='<LIST>',
parser.add_option('-l','--label', dest='keys', action='extend', metavar='<LIST>',
help='list of column labels (a,b,c,...)')
parser.add_option('-r','--reverse', dest='reverse', action='store_true',
help='reverse sorting')

10
processing/post/tagLabel.py
View File

@ -34,15 +34,15 @@ Tag scalar, vectorial, and/or tensorial data header labels by specified suffix.
""" + string.replace('$Id$','\n','\\n')
)
parser.add_option('-l','--tag', dest='tag', type='string', \
parser.add_option('-l','--tag', dest='tag', \
help='tag to use as suffix for labels')
parser.add_option('-v','--vector', dest='vector', action='extend', type='string', \
parser.add_option('-v','--vector', dest='vector', action='extend', \
help='heading of columns containing 3x1 vector field values')
parser.add_option('-t','--tensor', dest='tensor', action='extend', type='string', \
parser.add_option('-t','--tensor', dest='tensor', action='extend', \
help='heading of columns containing 3x3 tensor field values')
parser.add_option('-s','--special', dest='special', action='extend', type='string', \
parser.add_option('-s','--special', dest='special', action='extend', \
help='heading of columns containing field values of special dimension')
parser.add_option('-d','--dimension', dest='N', action='store', type='int', \
parser.add_option('-d','--dimension', dest='N', type='int', \
help='dimension of special field values [%default]')
parser.set_defaults(tag = '')

4
processing/post/vtk2ang.py
View File

@ -83,9 +83,9 @@ Builds a ang files from a vtk file.
)
parser.add_option('--disp','--displacement',dest='dispLabel', type='string', \
parser.add_option('--disp','--displacement',dest='dispLabel', \
help='label of displacements [%default]')
parser.add_option('--euler', dest='eulerLabel', type='string', nargs=3, \
parser.add_option('--euler', dest='eulerLabel', nargs=3, \
help='labels of euler angles [%default]')
parser.add_option('-n','--normal', dest='normal', type='float', nargs=3, \
help='normal of slices in direction of increasing slice numbers [%default]')

2
processing/post/vtk_addPointcloudData.py
View File

@ -32,7 +32,7 @@ Add scalar and RGB tuples from ASCIItable to existing VTK point cloud (.vtp).
""" + string.replace(scriptID,'\n','\\n')
)
parser.add_option('-v', '--vtk', dest='vtk', type='string', \
parser.add_option('-v', '--vtk', dest='vtk', \
help = 'VTK file name')
parser.add_option('-s', '--scalar', dest='scalar', action='extend', \
help = 'scalar values')

2
processing/post/vtk_addVoxelcloudData.py
View File

@ -32,7 +32,7 @@ Add scalar and RGB tuples from ASCIItable to existing VTK voxel cloud (.vtu).
""" + string.replace(scriptID,'\n','\\n')
)
parser.add_option('-v', '--vtk', dest='vtk', type='string', \
parser.add_option('-v', '--vtk', dest='vtk', \
help = 'VTK file name')
parser.add_option('-s', '--scalar', dest='scalar', action='extend', \
help = 'scalar values')

2
processing/post/vtk_pointcloud.py
View File

@ -32,7 +32,7 @@ Add grain index based on similitude of crystal lattice orientation.
""" + string.replace(scriptID,'\n','\\n')
)
parser.add_option('-p', '--positions', dest='pos', type='string', \
parser.add_option('-p', '--positions', dest='pos', \
help = 'coordinate label')
parser.set_defaults(pos = 'pos')

4
processing/post/vtk_scalars2vectors.py
View File

@ -16,9 +16,9 @@ parser = OptionParser(usage='%prog [options] vtkfile', description = """
""" + string.replace('$Id$','\n','\\n')
)
parser.add_option('-v','--vector', nargs=3, dest='vector', type='string', \
parser.add_option('-v','--vector', nargs=3, dest='vector', \
help='suffices indicating vector components [%default]')
parser.add_option('-s','--separator', dest='separator', type='string', \
parser.add_option('-s','--separator', dest='separator', \
help='separator between label and suffix [%default]')
parser.set_defaults(vector = ['x','y','z'])

2
processing/pre/OIMang_hex2cub.py
View File

@ -34,7 +34,7 @@ Converts ang files (EBSD Data) from hexagonal grid to a pixel grid
""" + string.replace(scriptID,'\n','\\n')
)
parser.add_option('-x', dest='columnX', action='store', type='int', metavar='int', \
parser.add_option('-x', dest='columnX', type='int', metavar='int', \
help='column containing x coordinates [%default]')
parser.set_defaults(columnX = 3)

10
processing/pre/abq_addUserOutput.py
View File

@ -74,17 +74,17 @@ Or have an existing set of user variables copied over from another *.inp file.
parser.add_option('-n','--number', dest='number', type='int', \
help='maximum requested User Defined Variable [%default]')
parser.add_option('--homogenization', dest='homog', type='string', \
parser.add_option('--homogenization', dest='homog', \
help='homogenization identifier (as string or integer [%default])')
parser.add_option('--crystallite', dest='cryst', type='string', \
parser.add_option('--crystallite', dest='cryst', \
help='crystallite identifier (as string or integer [%default])')
parser.add_option('--phase', dest='phase', type='string', \
parser.add_option('--phase', dest='phase', \
help='phase identifier (as string or integer [%default])')
parser.add_option('--use', dest='useFile', type='string', \
parser.add_option('--use', dest='useFile', \
help='Optionally parse output descriptors from '+
'different <model_job>.outputZZZ file. Saves the effort '+
'to start a calculation for each job [%default])')
parser.add_option('--option', dest='damaskOption', type='string', \
parser.add_option('--option', dest='damaskOption', \
help='Add damask option to input file '+
'for example: "periodic x z" [%default]')
parser.set_defaults(number = 0)

2
processing/pre/geom_addPrimitive.py
View File

@ -62,7 +62,7 @@ parser.add_option('-f', '--fill', dest='fill', type='int', metavar = 'int'
help='grain index to fill primitive. "0" selects maximum microstructure index + 1 [%default]')
parser.add_option('-q', '--quaternion', dest='quaternion', type='float', nargs = 4, metavar=' '.join(['float']*4),
help = 'rotation of primitive as quaternion')
parser.add_option('-a', '--angleaxis', dest='angleaxis', type='string', nargs = 4, metavar=' '.join(['float']*4),
parser.add_option('-a', '--angleaxis', dest='angleaxis', nargs = 4, metavar=' '.join(['float']*4),
help = 'rotation of primitive as angle and axis')
parser.add_option( '--degrees', dest='degrees', action='store_true',
help = 'angle is given in degrees [%default]')

2
processing/pre/geom_canvas.py
View File

@ -52,7 +52,7 @@ Changes the (three-dimensional) canvas of a spectral geometry description.
""" + string.replace(scriptID,'\n','\\n')
)
parser.add_option('-g', '--grid', dest='grid', type='string', nargs = 3, metavar='int int int ', \
parser.add_option('-g', '--grid', dest='grid', nargs = 3, metavar='int int int ', \
help='a,b,c grid of hexahedral box [unchanged]')
parser.add_option('-o', '--offset', dest='offset', type='int', nargs = 3, metavar='int int int', \
help='a,b,c offset from old to new origin of grid %default')

2
processing/pre/geom_fromAng.py
View File

@ -49,7 +49,7 @@ parser.add_option('-c', '--configuration', dest='config', action='store_true', \
help='output material configuration [%default]')
parser.add_option('--compress', dest='compress', action='store_true', \
help='search for matching mircrostructure and texture and lump them [%default]')
parser.add_option('-a', '--axes', dest='axes', type='string', nargs = 3, metavar = 'string string string', \
parser.add_option('-a', '--axes', dest='axes', nargs = 3, metavar = 'string string string', \
help='axes assignement of eulerangles x,y,z = %default')

2
processing/pre/geom_grainGrowth.py
View File

@ -45,7 +45,7 @@ parser.add_option('-N', '--smooth', dest='N', type='int', metavar='int',
help='N for curvature flow [%default]')
parser.add_option('-r', '--renumber', dest='renumber', action='store_true',
help='renumber microstructure indices from 1...N [%default]')
parser.add_option('-i', '--immutable', action='extend', dest='immutable', type='string', metavar = '<LIST>',
parser.add_option('-i', '--immutable', action='extend', dest='immutable', metavar = '<LIST>',
help='list of immutable microstructures')
parser.set_defaults(d = 1)

4
processing/pre/geom_rescale.py
View File

@ -53,9 +53,9 @@ Either absolute values or relative factors (like "0.25x") can be used.
""" + string.replace(scriptID,'\n','\\n')
)
parser.add_option('-g', '--grid', dest='grid', type='string', nargs = 3, metavar = 'string string string', \
parser.add_option('-g', '--grid', dest='grid', nargs = 3, metavar = 'string string string', \
help='a,b,c grid of hexahedral box [unchanged]')
parser.add_option('-s', '--size', dest='size', type='string', nargs = 3, metavar = 'string string string', \
parser.add_option('-s', '--size', dest='size', nargs = 3, metavar = 'string string string', \
help='x,y,z size of hexahedral box [unchanged]')
parser.add_option('-r', '--renumber', dest='renumber', action='store_true', \
help='renumber microstructure indices from 1...N [%default]')

2
processing/pre/geom_translate.py
View File

@ -55,7 +55,7 @@ parser.add_option('-o', '--origin', dest='origin', type='float', nargs = 3, \
help='offset from old to new origin of grid', metavar='float float float')
parser.add_option('-m', '--microstructure', dest='microstructure', type='int', \
help='offset from old to new microstructure indices', metavar='int')
parser.add_option('-s', '--substitute', action='extend', dest='substitute', type='string', \
parser.add_option('-s', '--substitute', action='extend', dest='substitute', \
help='substitutions of microstructure indices from,to,from,to,...', metavar='<string LIST>')
parser.set_defaults(origin = [0.0,0.0,0.0])

10
processing/pre/marc_addUserOutput.py
View File

@ -68,17 +68,17 @@ Or have an existing set of user variables copied over from another *.dat file.
""")
parser.add_option('-n','--number', dest='number', type='int', \
help='maximum requested User Defined Variable [%default]')
parser.add_option('--homogenization', dest='homog', type='string', \
parser.add_option('--homogenization', dest='homog', \
help='homogenization identifier (as string or integer [%default])')
parser.add_option('--crystallite', dest='cryst', type='string', \
parser.add_option('--crystallite', dest='cryst', \
help='crystallite identifier (as string or integer [%default])')
parser.add_option('--phase', dest='phase', type='string', \
parser.add_option('--phase', dest='phase', \
help='phase identifier (as string or integer [%default])')
parser.add_option('--use', dest='useFile', type='string', \
parser.add_option('--use', dest='useFile', \
help='Optionally parse output descriptors from '+
'different <model_job>.outputZZZ file. Saves the effort '+
'to start a calculation for each job [%default])')
parser.add_option('--option', dest='damaskOption', type='string', \
parser.add_option('--option', dest='damaskOption', \
help='Add damask option to input file '+
'for example: "periodic x z" [%default]')
parser.set_defaults(number = 0)

2
processing/pre/patchFromReconstructedBoundaries.py
View File

@ -807,7 +807,7 @@ reconstructed boundary file
""" + string.replace(scriptID,'\n','\\n')
)
parser.add_option("-o", "--output", action='extend', dest='output', type='string', \
parser.add_option("-o", "--output", action='extend', dest='output', \
help="types of output [image, mentat, procedure, spectral]")
parser.add_option("-p", "--port", type="int",\
dest="port",\

4
processing/pre/seeds_fromGeom.py
View File

@ -56,9 +56,9 @@ Examples:
)
parser.add_option('-w','--white', dest='whitelist', action='extend', type='string', \
parser.add_option('-w','--white', dest='whitelist', action='extend', \
help='white list of grain IDs', metavar='<LIST>')
parser.add_option('-b','--black', dest='blacklist', action='extend', type='string', \
parser.add_option('-b','--black', dest='blacklist', action='extend', \
help='black list of grain IDs', metavar='<LIST>')
parser.set_defaults(whitelist = [])