script to delete existing columns from ASCIItable
This commit is contained in:
Philip Eisenlohr
parent
30c55c3142
commit
8671b8ed38
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@ -113,6 +113,7 @@ class ASCIItable():
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# ------------------------------------------------------------------
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def data_write(self):
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if len(self.data) == 0: return
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if isinstance(self.data[0],list):
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self.output_write (['\t'.join(map(str,items)) for items in self.data])
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else:
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@ -0,0 +1,128 @@
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#!/usr/bin/env python
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import os,re,sys,math,string,damask
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from optparse import OptionParser, Option
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# -----------------------------
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class extendableOption(Option):
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# -----------------------------
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# used for definition of new option parser action 'extend', which enables to take multiple option arguments
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# taken from online tutorial http://docs.python.org/library/optparse.html
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ACTIONS = Option.ACTIONS + ("extend",)
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STORE_ACTIONS = Option.STORE_ACTIONS + ("extend",)
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TYPED_ACTIONS = Option.TYPED_ACTIONS + ("extend",)
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ALWAYS_TYPED_ACTIONS = Option.ALWAYS_TYPED_ACTIONS + ("extend",)
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def take_action(self, action, dest, opt, value, values, parser):
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if action == "extend":
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lvalue = value.split(",")
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values.ensure_value(dest, []).extend(lvalue)
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else:
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Option.take_action(self, action, dest, opt, value, values, parser)
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# --------------------------------------------------------------------
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# MAIN
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# --------------------------------------------------------------------
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parser = OptionParser(option_class=extendableOption, usage='%prog options [file[s]]', description = """
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Remove column(s) containing scalar, vectorial, and/or tensorial data.
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""" + string.replace('$Id$','\n','\\n')
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)
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parser.add_option('-v','--vector', dest='vector', action='extend', type='string', \
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help='heading of columns containing 3x1 vector field values')
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parser.add_option('-t','--tensor', dest='tensor', action='extend', type='string', \
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help='heading of columns containing 3x3 tensor field values')
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parser.add_option('-s','--special', dest='special', action='extend', type='string', \
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help='heading of columns containing field values of special dimension')
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parser.add_option('-d','--dimension', dest='N', action='store', type='int', \
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help='dimension of special field values [%default]')
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parser.set_defaults(vector = [])
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parser.set_defaults(tensor = [])
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parser.set_defaults(special = [])
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parser.set_defaults(N = 1)
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(options,filenames) = parser.parse_args()
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if len(options.vector) + len(options.tensor) + len(options.special)== 0:
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parser.error('no data column specified...')
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datainfo = { # list of requested labels per datatype
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'vector': {'len':3,
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'label':[]},
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'tensor': {'len':9,
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'label':[]},
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'special': {'len':options.N,
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'label':[]},
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}
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if options.vector != None: datainfo['vector']['label'] += options.vector
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if options.tensor != None: datainfo['tensor']['label'] += options.tensor
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if options.special != None: datainfo['special']['label'] += options.special
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# ------------------------------------------ setup file handles ---------------------------------------
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files = []
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if filenames == []:
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files.append({'name':'STDIN', 'input':sys.stdin, 'output':sys.stdout})
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else:
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for name in filenames:
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if os.path.exists(name):
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files.append({'name':name, 'input':open(name), 'output':open(name+'_tmp','w')})
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# ------------------------------------------ loop over input files ---------------------------------------
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for file in files:
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if file['name'] != 'STDIN': print file['name']
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table = damask.ASCIItable(file['input'],file['output'],False) # make unbuffered ASCII_table
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table.head_read() # read ASCII header info
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table.info_append(string.replace('$Id$','\n','\\n') + \
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'\t' + ' '.join(sys.argv[1:]))
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# --------------- figure out columns to process
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columns = []
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for datatype,info in datainfo.items():
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for label in info['label']:
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key = {True :'1_%s',
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False:'%s' }[info['len']>1]%label
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if key not in table.labels:
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sys.stderr.write('column %s not found...\n'%key)
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else:
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columns.append([table.labels.index(key),info['len']]) # remember column and extent of requested data
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if (info['len'] == 1):
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table.labels.remove(label) # remove single column head
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else:
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for i in xrange(info['len']):
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table.labels.remove('%i_%s'%(i+1,label)) # remove multidimensional column head
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columns.sort(key=lambda x:x[0],reverse=True) # sort from highest column to delete backwards
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# ------------------------------------------ assemble header ---------------------------------------
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table.head_write()
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# ------------------------------------------ process data ---------------------------------------
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while table.data_read(): # read next data line of ASCII table
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for col,len in columns: # loop over removal candidates
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del table.data[col:col+len] # remove each associated entry
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table.data_write() # output processed line
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# ------------------------------------------ output result ---------------------------------------
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table.output_flush() # just in case of buffered ASCII table
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file['input'].close() # close input ASCII table
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if file['name'] != 'STDIN':
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file['output'].close # close output ASCII table
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os.rename(file['name']+'_tmp',file['name']) # overwrite old one with tmp new
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@ -100,6 +100,7 @@ bin_link = { \
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'addStrainTensors.py',
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'addCompatibilityMismatch.py',
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'averageDown.py',
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'deleteColumn.py',
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'mentat_colorMap.py',
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'postResults.py',
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'spectral_iterationCount.py',
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