deleted unused vars. changed linking library info/path
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@ -19,7 +19,9 @@ fi
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cd $wd
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rm postprocessingMath.so
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f2py -c --f90flags="-heap-arrays 500000000" \
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f2py -c \
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postprocessingMath.pyf \
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postprocessingMath.f90 \
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-L libfftw3.a
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-lfftw3 \
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-L./
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#--f90flags="-heap-arrays 500000000" \
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@ -576,7 +576,6 @@ subroutine volume_compare(res_x,res_y,res_z,geomdim,nodes,defgrad,volume_mismatc
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real*8 volume_mismatch(res_x ,res_y ,res_z )
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real*8 coords(8,3)
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integer i,j,k
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real*8, dimension(3,3) :: defgrad_av
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real*8 vol_initial
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print*, 'Calculating volume mismatch'
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@ -617,9 +616,8 @@ subroutine shape_compare(res_x,res_y,res_z,geomdim,nodes,centroids,defgrad,shape
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real*8 centroids(res_x ,res_y ,res_z ,3)
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real*8 defgrad(res_x ,res_y ,res_z ,3,3)
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real*8 shape_mismatch(res_x ,res_y ,res_z)
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real*8 coords(8,3)
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real*8 coords_initial(8,3)
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integer i,j,k,n
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integer i,j,k
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print*, 'Calculating shape mismatch'
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coords_initial(1,:) = (/-geomdim(1)/2.0/real(res_x),-geomdim(2)/2.0/real(res_y),-geomdim(3)/2.0/real(res_z)/)
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@ -635,14 +633,15 @@ subroutine shape_compare(res_x,res_y,res_z,geomdim,nodes,centroids,defgrad,shape
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do k = 1,res_z
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do j = 1,res_y
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do i = 1,res_x
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shape_mismatch(i,j,k) = sqrt(sum((nodes(i ,j ,k ,:) - centroids(i,j,k,:) - matmul(defgrad(i,j,k,:,:), coords_initial(1,:)))**2.0))&
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+ sqrt(sum((nodes(i+1,j ,k ,:) - centroids(i,j,k,:) - matmul(defgrad(i,j,k,:,:), coords_initial(2,:)))**2.0))&
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+ sqrt(sum((nodes(i+1,j+1,k ,:) - centroids(i,j,k,:) - matmul(defgrad(i,j,k,:,:), coords_initial(3,:)))**2.0))&
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+ sqrt(sum((nodes(i ,j+1,k ,:) - centroids(i,j,k,:) - matmul(defgrad(i,j,k,:,:), coords_initial(4,:)))**2.0))&
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+ sqrt(sum((nodes(i ,j, k+1,:) - centroids(i,j,k,:) - matmul(defgrad(i,j,k,:,:), coords_initial(5,:)))**2.0))&
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+ sqrt(sum((nodes(i+1,j ,k+1,:) - centroids(i,j,k,:) - matmul(defgrad(i,j,k,:,:), coords_initial(6,:)))**2.0))&
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+ sqrt(sum((nodes(i+1,j+1,k+1,:) - centroids(i,j,k,:) - matmul(defgrad(i,j,k,:,:), coords_initial(7,:)))**2.0))&
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+ sqrt(sum((nodes(i ,j+1,k+1,:) - centroids(i,j,k,:) - matmul(defgrad(i,j,k,:,:), coords_initial(8,:)))**2.0))
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shape_mismatch(i,j,k) = &
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sqrt(sum((nodes(i ,j ,k ,:) - centroids(i,j,k,:) - matmul(defgrad(i,j,k,:,:), coords_initial(1,:)))**2.0))&
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+ sqrt(sum((nodes(i+1,j ,k ,:) - centroids(i,j,k,:) - matmul(defgrad(i,j,k,:,:), coords_initial(2,:)))**2.0))&
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+ sqrt(sum((nodes(i+1,j+1,k ,:) - centroids(i,j,k,:) - matmul(defgrad(i,j,k,:,:), coords_initial(3,:)))**2.0))&
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+ sqrt(sum((nodes(i ,j+1,k ,:) - centroids(i,j,k,:) - matmul(defgrad(i,j,k,:,:), coords_initial(4,:)))**2.0))&
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+ sqrt(sum((nodes(i ,j, k+1,:) - centroids(i,j,k,:) - matmul(defgrad(i,j,k,:,:), coords_initial(5,:)))**2.0))&
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+ sqrt(sum((nodes(i+1,j ,k+1,:) - centroids(i,j,k,:) - matmul(defgrad(i,j,k,:,:), coords_initial(6,:)))**2.0))&
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+ sqrt(sum((nodes(i+1,j+1,k+1,:) - centroids(i,j,k,:) - matmul(defgrad(i,j,k,:,:), coords_initial(7,:)))**2.0))&
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+ sqrt(sum((nodes(i ,j+1,k+1,:) - centroids(i,j,k,:) - matmul(defgrad(i,j,k,:,:), coords_initial(8,:)))**2.0))
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enddo; enddo; enddo
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end subroutine shape_compare
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@ -740,7 +739,7 @@ subroutine inverse_reconstruction(res_x,res_y,res_z,reference_configuration,curr
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print*, 'deltadef', math_inv3x3(dres_dF)*res_center
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defgrad_temp = defgrad_temp - math_inv3x3(dres_dF)*res_center ! Newton--Raphson
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print*, o, res_center
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pause
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! pause
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enddo
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defgrad(i,j,k,:,:) = defgrad_temp
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enddo; enddo; enddo
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@ -890,7 +889,6 @@ subroutine divergence_fft(res_x,res_y,res_z,vec_tens,geomdim,field,divergence_fi
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complex*16 field_fft(res_x,res_y,res_z,vec_tens,3)
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complex*16 img
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integer i, j, k
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integer k_s(3)
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real*8, parameter :: pi = 3.14159265358979323846264338327950288419716939937510
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integer*8 :: plan_fft(2)
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include 'fftw3.f' !header file for fftw3 (declaring variables). Library files are also needed
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@ -971,8 +969,7 @@ subroutine divergence(res_x,res_y,res_z,vec_tens,order,geomdim,field,divergence_
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real*8 geomdim(3)
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real*8 field(res_x,res_y,res_z,vec_tens,3)
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real*8 divergence_field(res_x,res_y,res_z,vec_tens)
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integer i, j, k, m, l, x
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integer k_s(3)
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integer i, j, k, m, l
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real*8, dimension(4,4) :: FDcoefficient = reshape((/ & !from http://en.wikipedia.org/wiki/Finite_difference_coefficients
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1.0/2.0, 0.0, 0.0, 0.0,&
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2.0/3.0,-1.0/12.0, 0.0, 0.0,&
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