Martin Diehl
bfc3fe410f
no direct connection to Orientation object
2021-05-27 19:10:23 +02:00
Martin Diehl
f7e1aad147
single source of truth
2021-05-27 18:44:20 +02:00
Martin Diehl
545a085c93
no need to hide, just add suffix to avoid clash with string argument
2021-05-27 18:41:42 +02:00
Martin Diehl
adb1e51e24
support for 2D tensor in load case
...
currently optional, but should become mandatory after a transition
period
2021-05-26 08:04:14 +02:00
Martin Diehl
0b80252d97
Merge remote-tracking branch 'origin/123_bccSlipSystem' into development
2021-05-22 22:40:33 +02:00
Sharan Roongta
fa3b077b72
Merge remote-tracking branch 'origin/development' into internal-restructure
2021-05-21 12:32:59 +02:00
f.basile
10c6070873
added {123} slips systems of bcc
2021-05-20 18:45:15 +02:00
Sharan Roongta
edb7834404
typo
2021-05-20 10:30:00 +02:00
Martin Diehl
2648464525
relax tolerances for quaternion initialization
...
we read in ASCII/YAML files, 1e-8 must be enough
2021-05-19 09:46:02 +02:00
Philip Eisenlohr
d6e69d5d4b
[skip ci] polishing of doc string
2021-05-10 14:44:58 -04:00
Martin Diehl
bc8a03b392
Merge branch 'python-polishing' into lattice-into-orientation
2021-05-07 22:04:25 +02:00
Martin Diehl
9c9286a4be
no connection to the class
2021-05-07 21:51:11 +02:00
Martin Diehl
cb8dbf6eda
simplified
2021-05-07 21:33:48 +02:00
Martin Diehl
a48fa5d797
better readable and documented
2021-05-07 20:07:59 +02:00
Martin Diehl
8626f6c047
hide imported modules in autocompletion
2021-05-06 15:00:03 +02:00
Martin Diehl
b1ad8197f2
object oriented approach
...
Orientation (of special lattice) should not have generic attributes
Also, import at the beginning of the file
2021-04-29 20:59:54 +02:00
Martin Diehl
b061b4911d
compatible with older scipy versions
2021-04-29 08:58:32 +02:00
Martin Diehl
3c41cd609f
Merge branch 'development' into env-reporting
2021-04-29 08:40:29 +02:00
Martin Diehl
00bc6a9031
4 threads as default. Reasonable for modern computers
...
hardcoded + and as shell variable
2021-04-28 20:26:25 +02:00
Martin Diehl
ff8ce3840b
handle infinite loop
2021-04-28 08:03:22 +02:00
Philip Eisenlohr
e9cfb2f968
Merge branch 'drop-old-DADF5-support' into 'development'
...
Improvements to damask.Result
See merge request damask/DAMASK!373
2021-04-27 00:33:41 +00:00
Philip Eisenlohr
ba938f1746
need to check for isinstance(int)
2021-04-26 17:56:15 -04:00
Philip Eisenlohr
5567512f73
removed unnecessary f-strings; added any -x to increments view
2021-04-26 14:26:16 -04:00
Philip Eisenlohr
b1bbe5528b
[skip ci] fixed mistake (R --> Q) in example
2021-04-26 17:09:11 +00:00
Franz Roters
55333f7e3e
Merge branch 'no-shell-variables' into 'development'
...
KISS: no shell variables
See merge request damask/DAMASK!370
2021-04-26 15:48:58 +00:00
Martin Diehl
de79d2d897
test handling of Marc results
2021-04-26 00:28:39 +02:00
Martin Diehl
62c987badf
add tracer to vtk files
2021-04-25 23:54:33 +02:00
Martin Diehl
68a839ed97
typo + improved help
2021-04-25 22:14:13 +02:00
Martin Diehl
d4a46b9be8
Merge remote-tracking branch 'origin/development' into drop-old-DADF5-support
2021-04-25 17:34:14 +02:00
Martin Diehl
0459f17f58
improved usability
2021-04-25 07:58:15 +02:00
Martin Diehl
18aa6f7f12
support for string arrays
...
allows to add phase label from mapping. Only scalar string arrays are
allowed (no real restriction)
2021-04-24 22:50:59 +02:00
Martin Diehl
6e1fe712c7
Merge branch 'python-documentation' into drop-old-DADF5-support
2021-04-24 19:39:28 +02:00
Philip Eisenlohr
690b478013
[skip ci] language polishing
2021-04-24 13:12:44 -04:00
Martin Diehl
24046ef683
support the user
2021-04-24 18:00:57 +02:00
Martin Diehl
95831e53f6
using improved documentation
2021-04-24 16:23:34 +02:00
Martin Diehl
3977e230b3
documenting and ensuring consistent argument names
...
'name' for a dataset matches the analogy to a file name
2021-04-24 14:47:45 +02:00
Martin Diehl
4d67c85a33
clarify out-of-place behavior and document return values
2021-04-23 23:32:09 +02:00
Martin Diehl
26f37d822d
state return value
...
not for Rotation as its docstring is extended by Orientation
2021-04-23 19:15:11 +02:00
Martin Diehl
6699f2ee5f
don't use shell variables
...
Marc solver can be controlled in python, installation can be tuned with
CLI arguments
2021-04-22 12:02:53 +02:00
Martin Diehl
3f8bd645d8
handle the case that MSC-related variables are not set
2021-04-22 07:55:41 +02:00
Martin Diehl
190ddafa44
don't support old file formats
2021-04-14 23:23:32 +02:00
Martin Diehl
0e6cb127df
damage can be defined in parts of the domain ...
2021-04-14 19:24:45 +02:00
Sharan Roongta
1be1a72a09
Merge branch 'Fortran-cleaning' into 'development'
...
Clarifying structure
See merge request damask/DAMASK!368
2021-04-13 11:08:18 +00:00
Martin Diehl
cfbb2d416f
better example
2021-04-10 23:58:53 +02:00
Martin Diehl
1133090b6c
logfile does not contain much valuable information
...
Marc automatically creates .out
2021-04-10 23:50:20 +02:00
Martin Diehl
37df78a8e0
don't show progress bar for empty iterations
2021-04-10 15:01:50 +02:00
Martin Diehl
d304654972
allow easy detection of empty view/get/place
2021-04-10 09:33:45 +02:00
Martin Diehl
07d573a56d
more helpful dataset descriptors
...
phase label for single phase material not helpful
2021-04-10 09:32:21 +02:00
Martin Diehl
44331c504b
__class__ is unknown (says prospector)
2021-04-10 08:29:42 +02:00
Martin Diehl
63b343ad87
Merge branch 'development' into allclose-rotation-orientation
2021-04-10 08:05:25 +02:00
Martin Diehl
e89236b14d
bugfix:
...
don't overwrite data when doing a 'place-like' operation to merge
datasets
2021-04-08 17:36:33 +02:00
Martin Diehl
2d8658822d
report return value
2021-04-08 14:58:22 +02:00
Martin Diehl
bc1454970c
mandatory symmetry
...
if symmetry is not of interest, damask.Rotation should be used
2021-04-06 22:49:08 +02:00
Philip Eisenlohr
bf2515c4c1
removed `Grid.diff` in lieu of `__eq__`
2021-04-06 12:10:35 -04:00
Philip Eisenlohr
bf4c88a39e
renamed result.read to get; polishing
2021-04-06 11:39:44 -04:00
Martin Diehl
02277fb820
consistently return masked array
2021-04-05 22:18:18 +02:00
Martin Diehl
d5806075d4
distinguish isclose/allclose and __eq__
2021-04-05 22:15:03 +02:00
Martin Diehl
115e3dd4c7
simplified
2021-04-05 17:18:12 +02:00
Martin Diehl
faa9e6aa6a
open file only once
2021-04-05 15:58:10 +02:00
Martin Diehl
c3a7a85f7a
avoid repetition
2021-04-05 15:41:28 +02:00
Martin Diehl
9db1ef9ed7
polishing
2021-04-05 13:41:49 +02:00
Martin Diehl
65b03aeb2d
Merge remote-tracking branch 'origin/development' into Results.read-.place
2021-04-05 10:22:49 +02:00
Martin Diehl
62c85db745
out of place behavior
2021-04-05 08:03:00 +02:00
Martin Diehl
fc409fcf08
'join' is always linear in time, '+' not
2021-04-04 22:12:28 +02:00
Martin Diehl
1d6b56346a
use 'view' and standardized calling signature
2021-04-04 20:56:30 +02:00
Martin Diehl
0e5f693fea
untangling
2021-04-04 19:44:06 +02:00
Martin Diehl
e1d57f176d
simplifying
...
[] has a special meaning for glob, use () to indicate direction for IPF
color. It is anyways the sample direction, not a crystallographic
direction
2021-04-04 19:05:58 +02:00
Martin Diehl
d78e0085fc
simplified
2021-04-04 18:32:17 +02:00
Martin Diehl
a962777d24
avoid code duplication
2021-04-04 13:38:40 +02:00
Martin Diehl
6fef46539e
standard names
2021-04-04 13:16:14 +02:00
Martin Diehl
6f3dc80079
simplified/using new functionality
2021-04-03 16:32:48 +02:00
Martin Diehl
27f2e3b26e
avoid random order when using sets
2021-04-03 12:21:06 +02:00
Martin Diehl
885aeb62e5
geometry0 itself is useful
...
can be combined with 'place' if in-memory VTK is required for spatial
operations
2021-04-03 08:58:22 +02:00
Martin Diehl
39c0bc9de6
polishing
2021-04-03 08:19:16 +02:00
Martin Diehl
20d0242d59
using new logic
2021-04-02 12:21:27 +02:00
Martin Diehl
e8ff509502
output all datasets per default
...
respect 'field' selection
2021-04-02 11:29:58 +02:00
Martin Diehl
18afa217fe
easier to understand
...
limit to same fields for homogenization and fields results in a little
less flexibility (requires two views) but should be acceptable for such
a little used feature
2021-04-02 08:24:49 +02:00
Martin Diehl
cf1ce6a1fe
support for masked array
...
masked arrays are the outcome of Result.place
2021-04-02 08:07:22 +02:00
Martin Diehl
58ac99831c
polishing
2021-04-02 07:47:03 +02:00
Martin Diehl
9459fea929
support for pandas not planned any more
...
damask.Table supports multidimensional data, numpy.ma supports masked
arrays
2021-04-02 07:42:54 +02:00
Philip Eisenlohr
f6d6aefe1d
function renaming; rewording of help messages
2021-04-01 18:41:28 -04:00
Martin Diehl
84e117c6b3
polished and added tests
2021-04-01 17:26:51 +02:00
Martin Diehl
71d1a341e4
simplified
2021-04-01 15:08:48 +02:00
Martin Diehl
2397df88f9
documenting
2021-04-01 07:21:34 +02:00
Martin Diehl
c1f7ea750b
legacy access not needed anymore
2021-04-01 06:55:47 +02:00
Martin Diehl
8a3af87e3e
Merge remote-tracking branch 'origin/development' into spring-cleaning
2021-04-01 00:09:51 +02:00
Philip Eisenlohr
07c9cf5f1a
- improved reporting and slicing of table.
...
- implemented numpy-like `allclose` and `isclose`
2021-03-31 18:30:07 +00:00
Martin Diehl
8a8a28adc4
support multi-constituents
2021-03-31 20:02:25 +02:00
Martin Diehl
be444b69ca
include homogenization
2021-03-31 15:44:27 +02:00
Martin Diehl
97e6c397d9
cleaned
2021-03-31 15:10:39 +02:00
Martin Diehl
7b678af1b4
float and int are different
2021-03-31 12:40:53 +02:00
Martin Diehl
8c7ee5e796
simplified
2021-03-31 12:05:51 +02:00
Martin Diehl
e9c65dee73
documenting and testing
2021-03-31 10:59:21 +02:00
Martin Diehl
7b846efe4a
arguments can be int, bool, str
2021-03-31 08:12:57 +02:00
Martin Diehl
eebb050a64
simplified
...
place seems to work
2021-03-31 07:56:42 +02:00
Martin Diehl
60119c1300
return minimal unique dictionaries per default
2021-03-30 21:39:14 +02:00
Martin Diehl
989992004d
cleaning dicts
2021-03-30 19:41:36 +02:00
Martin Diehl
7865092b82
not needed
2021-03-30 17:24:19 +02:00
Martin Diehl
b9b66fac45
simplified
2021-03-30 17:15:02 +02:00
Martin Diehl
b19ec4f8ae
first ideas for more user friendly usage
2021-03-30 07:24:47 +02:00
Martin Diehl
3fe1accf18
not used anymore
2021-03-28 19:48:44 +02:00
Martin Diehl
5ea2fa97a0
untested and unused code
2021-03-28 12:46:26 +02:00
Martin Diehl
a587e70704
split into small sections and test damage
2021-03-28 12:08:08 +02:00
Martin Diehl
a3ab890315
bugfix for ConfigMaterial
...
don't use mutable variables in python initializers, they get updated
2021-03-28 11:35:40 +02:00
Martin Diehl
480b8315a7
cleaning + testing
2021-03-27 15:54:29 +01:00
Martin Diehl
8a99306aed
old table not needed anymore
2021-03-27 14:34:18 +01:00
Martin Diehl
c742f7c9d0
need to cope with _asciitable.py and _test.py
2021-03-27 12:47:58 +01:00
Martin Diehl
be9e00347b
cleaning
...
dropped support for legacy table
2021-03-27 10:11:31 +01:00
Martin Diehl
111a1a76c6
cleaning
2021-03-27 07:35:49 +01:00
Martin Diehl
9fd244d8a0
cleaning
2021-03-26 20:59:49 +01:00
Martin Diehl
3e8bcd3225
cleaning examples, using consistent names
...
- examples in repository should only show the most basic steps
- MSC.Marc, marc => Marc
2021-03-26 09:27:49 +01:00
Martin Diehl
a72e2db678
Merge branch 'development' into output-rename
2021-03-25 21:03:20 +01:00
Philip Eisenlohr
3d4590a522
Merge branch 'citation-style' into development
2021-03-25 14:39:44 -04:00
Philip Eisenlohr
0e57135239
[skip ci] dx.doi.org --> doi.org
2021-03-25 14:33:08 -04:00
Martin Diehl
3b392281e4
consistent naming in HDF5 output
2021-03-25 19:22:59 +01:00
Martin Diehl
fe0cd8e5e2
transparently handle orientations/rotations
2021-03-25 15:30:31 +01:00
Martin Diehl
1ff6a09746
tests/specifications
2021-03-23 18:51:21 +01:00
Martin Diehl
572c3204d0
let the computer do the work
2021-03-23 14:28:56 +01:00
Martin Diehl
e0e088eaa8
EBSD dataset for testing
...
use only non-segmented data. Automatically fall back to numeric phase
names if cell_ensemble_data is not found
2021-03-23 13:42:04 +01:00
Martin Diehl
549b849730
better readable
2021-03-23 12:05:08 +01:00
Martin Diehl
926b5c657d
material_add can do expansion
2021-03-23 12:01:35 +01:00
Vitesh Shah
005fde2504
homogenization in material was missing
2021-03-23 11:48:35 +01:00
Martin Diehl
7012099d0c
substituted broken link
2021-03-20 14:34:14 +01:00
Martin Diehl
1c3d1ee0f2
documented
2021-03-20 13:37:06 +01:00
Martin Diehl
394fda5f37
improving import from DREAM.3D
...
- no duplicated entries even for non-segmented data
- using phase labels from file
- material.yaml: Dummy homogenization and phase
- tests to ensure correct order and match between Grid and
ConfigMaterial
2021-03-20 12:56:18 +01:00
Martin Diehl
cdcedd0d44
autodetect base group
2021-03-20 07:26:07 +01:00
Sharan Roongta
fc172921fb
unified citation style continued
2021-03-19 10:41:47 +01:00
Martin Diehl
07d79ef4ba
unifying style
2021-03-17 11:25:21 +01:00
Martin Diehl
ec28fd8a73
polishing
2021-03-12 09:23:05 +01:00
Martin Diehl
3b27c64709
Merge remote-tracking branch 'origin/development' into config_from_dream3D
2021-03-12 08:11:54 +01:00
Philip Eisenlohr
e2d4ab427e
explicit path joining with "/" in _result; updated cpTi CRSS
2021-03-09 22:02:49 -05:00
Philip Eisenlohr
a26e586b14
More general 'delete' (accepts iterables) and backports of '|' and '|=' for union/add.
...
'|=' would work for python 3.9 without extra code, but '|' unfortunately casts 'damask.Config' (subclass of 'dict') to a 'dict'.
2021-03-09 19:15:15 +00:00
Philip Eisenlohr
4208c4e713
adapted to Table.add being out-of-place
2021-03-08 11:04:49 -05:00
Philip Eisenlohr
7cbc69a4ca
added "Returns" to help
2021-03-08 11:02:27 -05:00
Philip Eisenlohr
109ad378c2
corrected help text of as_Rodrigues_vector
2021-03-02 16:26:18 +01:00
Franz Roters
7b89cb41f9
Merge branch 'dislotwin-correction' into 'development'
...
dislotwin-correction
See merge request damask/DAMASK!347
2021-02-28 19:45:34 +00:00
Philip Eisenlohr
464c62e7e7
abandoned integer aliases for projection directions
2021-02-28 12:47:13 +01:00
Philip Eisenlohr
175d724ded
added keepdims=False option to project_stereographic
2021-02-27 18:38:40 -05:00
Philip Eisenlohr
ea763fd941
generalized stereographic projection to cope with all three directions (x,y,Z)
2021-02-27 11:15:01 -05:00
Martin Diehl
bf223e8e00
helpful reporting in case of errors
2021-02-26 06:35:42 +01:00
Philip Eisenlohr
1d62341811
Fixed missing second-to-last entry in representation list. Polished help texts.
2021-02-26 03:20:28 +01:00
Philip Eisenlohr
2dea705fa9
polishing/shortening
2021-02-23 19:01:10 -05:00
Philip Eisenlohr
0b08b3d233
expanded help texts
2021-02-23 18:54:55 -05:00
Philip Eisenlohr
dcc42204ec
expanded help on material_add
2021-02-23 18:40:32 -05:00
Philip Eisenlohr
69316f186b
fixed ConfigMaterial.from_table; 2D grid.from_table now acceptable
2021-02-23 11:50:13 -05:00
Philip Eisenlohr
4a00254dba
shortened material_add and allow for multi-constituent; broken from_table...
2021-02-22 22:47:08 -05:00
Martin Diehl
0461c404f7
numpy uses __array__ for casting
...
avoids infinite loop of __init__, __getitem__, and shape. Found on
8cf07f6113
2021-02-22 18:52:06 +01:00
Martin Diehl
5517be5078
warn the caller of deprecated functions
2021-02-22 08:49:44 +01:00
Martin Diehl
67f0ab2ce8
silence deprecation warning
2021-02-22 08:46:28 +01:00
Martin Diehl
b00b4bb0ad
more general handling of precision
...
Anaconda on windows does not have np.float128 defined, but aliases
should work
https://numpy.org/devdocs/user/basics.types.html
2021-02-19 17:03:41 +01:00
Martin Diehl
f5f993435b
make intention clear
2021-02-19 16:34:28 +01:00
Martin Diehl
ab9661d951
don't see how ':=' should help here
2021-02-19 07:04:34 +01:00
Philip Eisenlohr
002cfbd085
Merge branch 'account-for-floating-point-precision-in-orientation' into 'development'
...
ensures that at least one orientation in the FZ is found
See merge request damask/DAMASK!337
2021-02-15 20:53:37 +00:00
Philip Eisenlohr
89e8ca4535
renamed and shortened _separate_arguments()
2021-02-15 11:22:42 -05:00
Sharan Roongta
099cd90890
Merge remote-tracking branch 'origin/development' into python-improvements
2021-02-13 16:51:29 +01:00
Martin Diehl
fe63adcca4
mimic python error message and ensure that error is raised
2021-02-12 18:20:39 +01:00
Sharan Roongta
9e8a243d6f
avoid name conflict with lattice parameter 'c'
2021-02-12 12:15:08 +01:00
Sharan Roongta
f1b8978e21
accept variables that will be used
...
**kwargs allowed the use of extraneous arguments
2021-02-12 11:24:12 +01:00
Martin Diehl
958936c449
Merge branch 'development' into polishing-for-release
2021-02-11 21:59:59 +01:00
Martin Diehl
e8fae6b2a7
simplified
2021-02-11 21:56:53 +01:00
Martin Diehl
4e31862f0f
avoid repetition
2021-02-10 18:35:13 +01:00
Martin Diehl
6895ef6b18
always write LF line endings
...
small pitfall: I windows users use a filehandle that results from a call
to open() without the newline option, they get still CRLF line endings
2021-02-10 10:03:35 +01:00
Martin Diehl
4bcbcb34d0
ensures that at least one orientation in the FZ is found
2021-02-09 23:58:00 +01:00
Martin Diehl
869307c5ec
temperature not needed for pure mechanics
...
would also require to define thermal homogenization
2021-02-08 22:56:37 +01:00
Sharan Roongta
14ce127dc4
fraction --> v
2021-02-04 13:46:01 +01:00
Martin Diehl
051e3ed0ae
not needed anymore
2021-02-02 12:26:08 +01:00
Martin Diehl
0f6094890a
simplified
...
damask.environment does not offer any advantage over os.environ for
variables. After 'root_dir' was removed, the whole module became
obsolete
2021-01-15 12:14:05 +01:00
Martin Diehl
37de561938
shell variables are more robust
...
they will also work if Fortran and python code are installed in
different locations.
2021-01-13 18:53:16 +01:00
Martin Diehl
d76543f759
better name
2021-01-13 14:57:58 +01:00
Martin Diehl
a7d998dd48
standard name
2021-01-13 14:53:50 +01:00
Martin Diehl
4c35da8627
simplified
2021-01-13 11:33:28 +01:00
Martin Diehl
196902948f
simplified
2021-01-13 09:54:04 +01:00
Martin Diehl
f4247e0f35
simpler (and scipy compatible)
2021-01-13 09:35:42 +01:00
Philip Eisenlohr
2d6e6a2370
Rotation composition uses "*"; application of Rotation to object uses "@"; "apply()" works on both
2021-01-12 18:57:33 -05:00
Vitesh Shah
c3c4b05c01
handling point based data enabled
2021-01-12 13:01:11 +01:00
Vitesh Shah
6bffb91951
Added example
2021-01-11 15:16:46 +01:00
Vitesh Shah
6c367ec010
conform to docstring conventions
2021-01-11 15:05:48 +01:00
Vitesh Shah
2951617e28
able to take phaseID into account
2021-01-11 15:02:15 +01:00
Vitesh Shah
dbab3c3a83
dream3D has an extra row at start for grain based data
2021-01-11 14:21:56 +01:00
Vitesh Shah
028d47034d
conversion from dream3D for single phase materials
2021-01-11 13:31:08 +01:00
Philip Eisenlohr
bde66d85fc
Merge branch 'development' into python-improvements
2021-01-07 10:58:33 -05:00
Philip Eisenlohr
94cfe28128
polishing help; Rotation.apply(Rotation) now acceptable.
2021-01-06 18:03:10 -05:00
Martin Diehl
acbb564afc
restored functionalitity for adding list.
...
got accidently lost
2021-01-04 07:23:14 +01:00
Martin Diehl
d8b4b7e0f5
!= and == work componentwise
2021-01-03 21:52:19 +01:00
Martin Diehl
f48a446353
compatible with scipy.spatial.transform.Rotation
...
also introduced inplace variants and '/' as multiplicative inverse of
'*'
2021-01-03 16:08:22 +01:00
Martin Diehl
98723cb0ed
need to handle special case of Re() = 0
...
ensuring that the real part is positive seems to be a good idea on first
sight, but it would be easier to simply acknowledge that qu = -qu
2021-01-03 15:50:15 +01:00
Martin Diehl
80b8693a66
avoid adding to existing data, i.e. when reading a file
2021-01-03 12:10:39 +01:00
Martin Diehl
5f1399acc3
consistent behavior with other classes
...
python dictionary operates in-place, so wrappers for out-of-place
behavior let it use like the other DAMASK classes
2021-01-03 12:09:21 +01:00
Martin Diehl
9a278daa3f
copy not needed
...
YAML writer does not write out references anymore
2021-01-03 12:07:02 +01:00
Martin Diehl
35ca1ffb0a
consistent copy functionality
2021-01-03 12:03:40 +01:00
Martin Diehl
6fe1ff8e39
fixed test for rodrigues parametrization
...
for angle close to 180deg, the sign of the axis does not matter
2021-01-03 11:50:45 +01:00
Philip Eisenlohr
da62daf15d
added test for appending rotation lists; better check for type==list
2020-12-28 12:26:09 -05:00
Philip Eisenlohr
4796afdd92
fix for broken representation of no-rotation orientations and averaging weights
2020-12-28 12:10:21 -05:00
Philip Eisenlohr
d8b57680ec
raise NotImplemented when using R*b instead of R@b
2020-12-21 15:47:18 -05:00
Sharan Roongta
6cc78cb41e
Merge branch 'misc-improvements' into 'development'
...
Misc improvements
See merge request damask/DAMASK!302
2020-12-18 15:19:04 +01:00
Martin Diehl
35f9861818
Fortran standard is 2018
...
will not work for older compilers
2020-12-18 15:19:04 +01:00
Martin Diehl
5fb0e4908b
Examples reflect actual behavior
2020-12-18 07:09:05 +01:00
Philip Eisenlohr
403ac693da
need to pass init argument to dict superclass
2020-12-17 18:08:55 -05:00
Philip Eisenlohr
e11be7e600
preinitialize a ConfigMaterial object with 'constituents','homogenization','phase' keys
2020-12-17 10:49:33 -05:00
Martin Diehl
2dd520b4a2
P_aim should be independent from P_av
...
P_av is not defined after restart or cutback. Restart with change of
load case is probably still an issue
2020-12-15 08:06:50 +01:00
Martin Diehl
aad123f41b
Merge branch 'table-getitem' into development
2020-12-12 19:58:42 +01:00
Philip Eisenlohr
36e4042f0b
removed "where" method from Table class
2020-12-11 19:31:19 -05:00
Martin Diehl
2e28bc127a
better message in case that GUI is not possible
2020-12-10 23:44:54 +01:00
Martin Diehl
a881e6e57a
Merge remote-tracking branch 'origin/development' into misc-improvements
2020-12-10 23:41:59 +01:00
Martin Diehl
32c2de6b91
Ensuring regular spacing for grid
2020-12-10 22:47:30 +01:00
Martin Diehl
4286fc3b82
Merge branch 'development' into misc-improvements
2020-12-10 20:21:00 +01:00
Martin Diehl
9b6f5ba9c6
Merge branch 'development' into compressed-hdf5
2020-12-10 00:23:22 +01:00
Martin Diehl
de1708b20a
missing renames + better help
2020-12-08 00:36:41 +01:00
Martin Diehl
78192ef3fd
clearer naming + better comments, thanks to @p.eisenlohr
2020-12-07 17:49:37 +01:00
Martin Diehl
429b84004d
more filters
...
- shuffle: significanlty better compression
- Fletcher32: checksum to detect errors
computational overhead is very small
2020-12-06 19:57:00 +01:00
Martin Diehl
52e3fb50bc
compress.
...
Datasets are chunked along first timension. Chunk size (1MB for real) is
probably not optimal
2020-12-06 11:44:52 +01:00
Martin Diehl
000de75617
write orientation as plain array, not derived type
2020-12-06 08:36:16 +01:00
Martin Diehl
c80e1c5420
less confusing in the standard case, more helpful in the special case
2020-12-05 10:47:42 +01:00
Martin Diehl
ed286ee09f
Merge branch 'rename-grid-2' into misc-improvements
2020-12-05 09:50:46 +01:00
Martin Diehl
171d642dbd
rename: Geom -> Grid
2020-12-04 07:50:47 +01:00
Martin Diehl
0fdefa5e78
renames:
...
after the rename of "grid" to "cell", the name cell should not be used
for the coordinates of the cell centers. In agreement with the names
x_p/u_p for point positions/displacements, now the "point" is used to
refer to the materialpoints (i.e. cell centers)
Additionally, "_node"/"_point" are now suffixes to
"coordinates"/"displacements".
Finally, "coords" is renamed to "coordinates"
2020-12-03 23:59:37 +01:00
Martin Diehl
ac0a20696c
rename: grid -> cells
2020-12-03 22:16:34 +01:00
Philip Eisenlohr
ccf1a849fa
Merge branch 'ShowGrainBoundaries' into 'development'
...
Show grain boundaries
See merge request damask/DAMASK!297
2020-12-03 17:13:15 +01:00
Philip Eisenlohr
4877334986
added getitem and where functionality to Table
2020-12-02 19:25:54 -05:00
Philip Eisenlohr
97df1ab9b3
reinstated write functionality
2020-12-02 13:04:56 -05:00
Martin Diehl
d3a5979d25
meaningful result
2020-12-02 14:45:47 +01:00
Martin Diehl
c880052250
avoid evil eval
2020-12-02 14:37:44 +01:00
Martin Diehl
aa8f30d746
Merge branch 'development' into ShowGrainBoundaries
2020-12-02 12:50:04 +01:00
Martin Diehl
1c2cdbd5a1
support of all standard numpy types
...
+ tests
2020-11-30 12:33:21 +01:00
Martin Diehl
813ef927c4
consistent with "save_XDMF" (capitalized)
2020-11-30 09:28:46 +01:00
Martin Diehl
4d2bf37193
Merge branch 'lattice-structure-rename' into ShowGrainBoundaries
2020-11-29 20:53:58 +01:00
Martin Diehl
f48f5cb0e8
bugfix/better readable
2020-11-29 08:58:48 +01:00
Martin Diehl
c712332e87
using consistent names for Bravais lattice in Fortran and Python
2020-11-28 22:38:12 +01:00
Martin Diehl
a8da1e5ed9
Paraview 5.9 supports datasets of arbitrary length in XDMF
2020-11-27 22:57:15 +01:00
Martin Diehl
3c1f1af009
more then one direction in file
2020-11-27 20:16:06 +01:00
f.basile
c2be41b9f6
remove import vtk because unused
2020-11-25 12:53:29 +01:00
f.basile
eb085958f8
polishing
2020-11-25 11:32:07 +01:00
f.basile
cd58278a01
returns vtk object
2020-11-25 10:39:58 +01:00
f.basile
7abc32b09c
alternative for if d_s== , not sure it improves the previous
2020-11-24 19:59:46 +01:00
f.basile
c8b1f8d9f1
shortest possible way i found to include directions in an elegant way
2020-11-24 17:49:58 +01:00
Francisco Jose Gallardo Basile
030062d293
Merge branch 'unit-in-vtk' into 'development'
...
Unit in vtk
See merge request damask/DAMASK!288
2020-11-24 16:21:01 +01:00
Martin Diehl
7fa98ef084
DEcode bytes into str
2020-11-23 20:17:04 +01:00
Martin Diehl
5ab2847b36
polishing
2020-11-23 20:06:34 +01:00
Martin Diehl
cbe8160e13
Merge remote-tracking branch 'origin/development' into vector-mechanics
2020-11-23 19:55:34 +01:00
Martin Diehl
f85dba2835
small polishing
2020-11-23 19:43:19 +01:00
Martin Diehl
287d44c5df
Merge remote-tracking branch 'origin/development' into unit-in-vtk
2020-11-23 19:19:02 +01:00
Franz Roters
7356330cf6
Merge remote-tracking branch 'origin/new_names_result' into development
2020-11-23 11:49:15 +01:00
Sharan Roongta
c58f9f23a1
read old version while resolving merge conflicts
2020-11-22 14:32:32 +01:00
Sharan Roongta
24fabdec22
Merge branch 'development' into vector-mechanics
2020-11-22 12:02:29 +01:00
Martin Diehl
2de3a6a205
fits better to stretch_left/right
2020-11-19 22:46:52 +01:00
Martin Diehl
a87596cefc
return rotation type (ensures proper rotation)
2020-11-19 22:36:19 +01:00
Philip Eisenlohr
662a033d91
adapted to VTR geom files
2020-11-19 14:26:15 -05:00
Martin Diehl
a4b5c2a537
shorter (but still self-explanatory) name
2020-11-19 15:20:44 +01:00
Martin Diehl
6e5cb60132
general tensor functionality
2020-11-19 15:16:01 +01:00
Martin Diehl
894a8de9f9
avoid name clash: as_Rodrigues_vector(vector = ...)
2020-11-19 14:31:14 +01:00
Martin Diehl
1c07152b96
sorted alphabetically
2020-11-19 14:05:59 +01:00
Martin Diehl
20d0732b2e
output unit to XDMF/vtk
2020-11-19 13:45:40 +01:00
Martin Diehl
5a5dd24687
removed aliases
2020-11-19 10:50:14 +01:00
Martin Diehl
903c185ee6
distinguish 'file not found' and 'invalid file'
2020-11-19 10:39:41 +01:00
Martin Diehl
c74e57f225
vtk error handling is not very helpful
2020-11-19 09:59:39 +01:00
Martin Diehl
96826dca73
Geom.load_ASCII now auto-shifts material indices
2020-11-19 09:40:19 +01:00
Martin Diehl
b9b26cb2cc
output results for all constituents
2020-11-18 23:36:02 +01:00
Martin Diehl
5359e05fd3
always merge homogenization results
2020-11-18 23:17:12 +01:00
Martin Diehl
b885e38b3f
better readable
2020-11-18 22:12:23 +01:00
Martin Diehl
4bf802a28e
fixed documentation
2020-11-18 21:51:37 +01:00
Martin Diehl
843d7d8cac
Merge remote-tracking branch 'origin/development' into new_names_result
2020-11-18 21:37:52 +01:00
Martin Diehl
7352431143
vectorized
2020-11-18 20:10:04 +01:00
Martin Diehl
564ee6c96a
make uvw/hkl keyword-only arguments
...
avoid to prefer one over the other, since they are mutually exclusive
2020-11-18 16:45:53 +01:00
Martin Diehl
c60d9cde2a
merge 'mechanics' datasets
...
was like that for 'generic'. Needs detailed discussion in future
2020-11-18 15:52:55 +01:00
Martin Diehl
838a4ea592
[skip ci] fix for scalar values
2020-11-18 14:57:32 +01:00
Martin Diehl
870c0f7aca
removed aliases
...
required bump of DADF5 version
2020-11-18 14:53:11 +01:00
Martin Diehl
1c9028d0b1
simplified
2020-11-18 14:01:52 +01:00
Martin Diehl
89c748fdf1
Merge remote-tracking branch 'origin/development' into vector-mechanics
2020-11-18 13:55:05 +01:00
Martin Diehl
9a1e8e3c38
for the transition period
2020-11-18 13:28:53 +01:00
f.basile
7291b95055
avoid pyflake for blank line 6 final
2020-11-18 12:29:10 +01:00
f.basile
ee5822b721
avoid pyflake for blank line 5
2020-11-18 12:25:08 +01:00
f.basile
4dbfad74cb
avoid pyflake for blank line 4
2020-11-18 12:24:17 +01:00
f.basile
eda3837874
avoid pyflake for blank line 3
2020-11-18 12:21:09 +01:00
f.basile
c681101136
avoid pyflake for blank line 2
2020-11-18 12:19:47 +01:00
f.basile
33aa888fc7
avoid pyflake for blank line
2020-11-18 12:17:05 +01:00
f.basile
e8f82d52cc
fix bug
2020-11-18 12:16:08 +01:00
f.basile
be206d28b3
vectorized and more options
2020-11-18 12:14:12 +01:00
Martin Diehl
6bedd84759
self-explanatory names
2020-11-18 08:15:04 +01:00
Martin Diehl
cd8434b991
Merge remote-tracking branch 'origin/development' into python-improvements
2020-11-16 22:57:49 +01:00
Sharan Roongta
c16ad845bc
Merge branch 'modernize-testing' into 'development'
...
Modernize testing
See merge request damask/DAMASK!280
2020-11-16 20:10:38 +01:00
Martin Diehl
a8fec922d5
show name in title
2020-11-16 17:25:13 +01:00
Philip Eisenlohr
5a53f8743b
added to docstring
2020-11-16 10:44:33 -05:00
Philip Eisenlohr
de20e6b35d
code shortening; list_predefined() --> property "predefined"
2020-11-16 10:23:26 -05:00
Martin Diehl
5ebde607a2
einsum simplifications
2020-11-16 07:43:20 +01:00
Martin Diehl
9b9d83d93c
adding '_tensor' not needed
2020-11-16 01:15:39 +01:00
Martin Diehl
b893967b68
more systematic names and extended docstrings
2020-11-16 01:02:36 +01:00
Martin Diehl
6f81f5278d
separating general tensor math from mechanics operations
2020-11-16 00:13:34 +01:00
Martin Diehl
b3955573f6
using new tests
2020-11-15 22:39:47 +01:00
Martin Diehl
fd8743af5e
clearly distinguish seeds for tessellation and seeds for RNG
2020-11-15 13:49:17 +01:00
Martin Diehl
1541ac0add
more intuitive use
2020-11-15 12:38:54 +01:00
Martin Diehl
15af12bbb4
__ne__ is automatically set to !__eq__, __neq__ has no special meaning
2020-11-15 11:38:26 +01:00
Martin Diehl
51e5dda702
documentation + consistent string formatting
2020-11-15 10:54:20 +01:00
Martin Diehl
05c1007add
documentation improvments + acceptance of lists
...
example code at respective function, no space in 'or' variable names
(sphinx cannot handle this)
2020-11-15 10:31:01 +01:00
Martin Diehl
1eb9d494c7
not specific to Orientation class
2020-11-14 19:51:15 +01:00
Martin Diehl
149fce0a7e
increase test coverage
2020-11-14 19:42:52 +01:00
Martin Diehl
764aacf2a1
increasing test coverage
2020-11-14 17:54:47 +01:00
Martin Diehl
9eb4e2d0de
corrected handling of scalar/array arguments
...
+ more tests
+ corrected handling of numpy types
2020-11-14 17:26:38 +01:00
Martin Diehl
6529613726
Merge remote-tracking branch 'origin/development' into vector-mechanics
2020-11-14 15:10:52 +01:00
Philip Eisenlohr
b3e8b85d25
normalizing coordinates _before_ rotation causes wrong primitive shape for non-cubic VEs
2020-11-12 18:34:29 -05:00
Martin Diehl
e15678e7a4
consistent handling of comments
2020-11-12 21:31:09 +01:00
Martin Diehl
e90c20ccd6
Merge remote-tracking branch 'origin/geom-attributes-as-checked-properties' into development
2020-11-10 14:54:40 +01:00
Martin Diehl
5926f84851
WIP: refactoring Orientation=Symmetry+Rotation, Lattice=subclass of Sym, and Crystal=Lattice+Rotation
2020-11-09 21:20:56 +01:00
Philip Eisenlohr
f105631015
redefined attributes material,size,origin,comments as properties; enhanced help/descriptions
2020-11-08 12:11:30 -05:00
Martin Diehl
bbaeeb02da
Merge remote-tracking branch 'origin/misc-improvements' into h5py3
2020-11-06 13:19:47 +01:00
Martin Diehl
58a5d2666c
ensure correct Mises mode
2020-11-06 00:10:46 +01:00
Martin Diehl
e649fb195f
update to use variable-length strings
2020-11-05 22:34:41 +01:00
Martin Diehl
30938a8278
correct order (brackets)
2020-11-05 21:38:00 +01:00
Martin Diehl
e26bb962c8
encode from str to bytes
2020-11-05 21:19:49 +01:00
Martin Diehl
68d384bbdd
bugfix: missing rename
2020-11-05 21:14:02 +01:00
Martin Diehl
a416f5ed5b
encode/decode for h5py3 not needed anymore
...
attribute values with variable-length strings will be interpreted as
str, not bytes
2020-11-05 16:13:29 +01:00
Martin Diehl
708c83dcf1
polishing
2020-11-05 07:15:59 +01:00
Martin Diehl
1fcf9cb721
don't compute silently the wrong von Mises kind
...
and allow the user to set it explicitly
2020-11-05 05:48:12 +01:00
Martin Diehl
7341b9830a
h5py v 3.x handles strings differently
2020-11-05 05:39:45 +01:00
Martin Diehl
01af348cd9
symmetric behavior load/save
...
default name reflects fact that material.yaml has a fixed name
2020-11-04 21:14:08 +01:00
Martin Diehl
ae959b9cc2
allow '.' in filenames
2020-11-04 18:08:04 +01:00
Philip Eisenlohr
eaceb16203
added +1 to nanmax(material) as auto offset, now consistent with help and intention...
2020-11-03 17:43:57 -05:00
Sharan Roongta
11f1f4f555
Merge branch 'modernize-testing' into development
2020-11-03 12:49:19 +01:00
Philip Eisenlohr
4d4278e6dd
shortened tainted_neighborhood logic
2020-11-02 18:20:52 -05:00
Martin Diehl
cf958d32b4
Merge branch 'development' into vector-mechanics
2020-11-02 15:23:11 +01:00
Martin Diehl
be47c744d8
Merge branch 'development' into geom-sort
2020-11-02 12:26:31 +01:00
Martin Diehl
212ed62b19
pytest-based tests
...
removed unused functionality from deprecated python library modules
2020-11-02 12:07:16 +01:00
Martin Diehl
086b215d94
Merge branch 'test-new-dir' into development
2020-11-01 19:29:52 +01:00
Martin Diehl
cf18954db9
hint for future improvement
2020-11-01 19:20:52 +01:00
Martin Diehl
7059e6af6e
might not be in the last line
2020-11-01 18:34:52 +01:00
Martin Diehl
946da2379b
Merge remote-tracking branch 'origin/development' into modernize-testing
2020-11-01 10:06:52 +01:00
Martin Diehl
0a3598c338
Merge branch 'simplify-from_table' into development
2020-10-31 22:34:17 +01:00
Martin Diehl
0ebb9b611d
functionality to sort material id
...
convenient for layered materials
2020-10-31 20:46:21 +01:00
Martin Diehl
67f69fc8a5
data is consecutive
2020-10-31 17:23:58 +01:00
Martin Diehl
8224122bb9
more user friendly error handling
2020-10-31 13:16:25 +01:00
Martin Diehl
aecf2f539e
allow one homogenization
...
quite useless ...
2020-10-30 22:26:02 +01:00
Martin Diehl
c29e3650f3
don't squeeze into scalar
2020-10-30 22:24:27 +01:00
Franz Roters
392803e47d
Merge remote-tracking branch 'origin/Marc_version_names' into development
2020-10-30 17:49:18 +01:00
Philip Eisenlohr
46e5023f8b
Merge branch 'geom-improvements' into 'development'
...
Geom improvements
See merge request damask/DAMASK!264
2020-10-29 23:53:33 +01:00
Martin Diehl
b2289e80b2
simplified
2020-10-29 20:09:13 +01:00
Martin Diehl
4b700d367e
improved test
2020-10-29 17:59:44 +01:00
Vitesh Shah
904c338b13
Reflect version underscore of installation files
2020-10-29 15:21:40 +01:00
Martin Diehl
999cf53c07
tests+fixes
2020-10-29 07:42:41 +01:00
Martin Diehl
3be0c462a8
explicit is better then implicit:
...
user should sort Table according to coordinates to create geometry. This
allows to have consistent behavior for from_table in Geom and
ConfigMaterial. We always ensure to keep the order
2020-10-29 07:25:16 +01:00
Martin Diehl
1b2cd6caf6
documentation was misleading
2020-10-28 21:53:46 +01:00
Martin Diehl
4ff99a7af4
more logical layout
2020-10-28 21:51:20 +01:00
Martin Diehl
855bf124d3
faster
...
https://stackoverflow.com/questions/16992713
2020-10-28 16:53:16 +01:00
Sharan Roongta
21f095c9d8
Merge branch 'flexible-yaml-dump' into development
2020-10-28 16:19:17 +01:00
Martin Diehl
98e0ef3881
no loops
...
taken from https://stackoverflow.com/questions/3403973
2020-10-28 13:38:20 +01:00
Martin Diehl
d72343c865
keep order of unique values found in table
2020-10-28 11:56:28 +01:00
Martin Diehl
b38a498197
fast
2020-10-28 09:43:20 +01:00
Martin Diehl
5f03e8cf8f
0-based material indices
2020-10-28 09:31:55 +01:00
Martin Diehl
0804e6ee74
pythonic names
2020-10-27 13:50:47 +01:00
Martin Diehl
fa67a2ddf8
cell_coordinates is now a property
2020-10-27 13:35:14 +01:00
Martin Diehl
201a62d7c9
easier visualization if verts have a point-cell
2020-10-27 13:19:53 +01:00
Martin Diehl
4dd387d7f5
compatibility with old pyyaml + test for numpy
2020-10-27 06:39:58 +01:00
Martin Diehl
4159ae5f3d
keep order of keys
2020-10-26 21:44:38 +01:00
Martin Diehl
5834d95012
support for more types
...
- allow to directly use Config and its sublasses (cast to dict)
- convert numpy arrays
2020-10-26 21:38:24 +01:00
f.basile
802e09be4f
python/damask/_geom.py exceeds line length limit (maximum line length 143 > 132)
2020-10-26 15:11:06 +01:00
f.basile
2715e7b1a7
a bit more vectorized
2020-10-26 15:09:32 +01:00
f.basile
1cbfa866d2
get rid of scalar variables
2020-10-23 16:23:36 +02:00
Vitesh Shah
bd67296e8d
MARC_VERSION as MSCVERSION
2020-10-22 11:50:13 +02:00
f.basile
7fa31a8a1b
solving imported but unused pyflake
2020-10-19 12:55:35 +02:00
f.basile
4c22efc6ce
added show GB
2020-10-19 12:52:10 +02:00
Martin Diehl
bac7ace413
Merge remote-tracking branch 'origin/general-N_constituents' into vtr-only
2020-10-13 17:39:19 +02:00
Martin Diehl
86d91baf90
0-offset for geom
2020-10-10 10:36:15 +02:00
Martin Diehl
ffabeacbcb
removing functionality related to deprecated 'geom' format
2020-10-10 09:41:11 +02:00
Martin Diehl
06d11a72da
better fitting name
...
load implies a more direct takeover.
2020-10-09 19:19:05 +02:00
Martin Diehl
57180952ec
typo
2020-10-09 19:05:05 +02:00
Martin Diehl
347c88cbb6
documented
2020-10-09 14:24:29 +02:00
Martin Diehl
75401dd280
generate configuration from table
2020-10-09 07:45:20 +02:00
Martin Diehl
6ecaaa31c9
fairly general function to generate material configuration
2020-10-08 22:07:26 +02:00
Martin Diehl
952ad4f8fe
functionality for geom generation in python lib
2020-10-08 18:39:05 +02:00
Martin Diehl
3050471a2d
avoid circular inclusion
2020-10-08 18:05:03 +02:00
Martin Diehl
3d49678e93
new names part 2
2020-10-02 17:51:33 +02:00
Martin Diehl
a04966582a
Merge remote-tracking branch 'origin/development' into general-config
2020-10-02 14:54:16 +02:00
Martin Diehl
b29f22f513
documenting the actually available TMPS
2020-10-01 09:25:32 +02:00
Philip Eisenlohr
a59e64a8e4
renamed TPMS and added more from additional references
2020-09-30 17:28:25 -04:00
Martin Diehl
33685bc493
allow user do control output style
...
(numerics.yaml looks strange otherwise)
2020-09-30 12:32:37 +02:00
Martin Diehl
5ad46ae021
completely tested
2020-09-30 09:05:23 +02:00
Martin Diehl
fdfcb16d15
not needed
2020-09-30 08:16:12 +02:00
Martin Diehl
b383a4530e
better name, subclassing for easy extension to load
2020-09-30 07:53:25 +02:00
Martin Diehl
54e4943353
get rid of shell scripts
2020-09-30 07:11:33 +02:00
Philip Eisenlohr
350f5eb66a
improved from_ODF documentation
2020-09-29 12:55:00 -04:00
Philip Eisenlohr
31f86c28f4
[skip ci] added parameter description; shortened hybrid_IA pre-loop logic
2020-09-29 11:15:10 -04:00
Martin Diehl
d2cfcdaca0
reference Data for ODF sampling (hybridIA) + skeleton of a test
2020-09-28 16:14:27 +02:00
Martin Diehl
95b85626d8
general hybridIA functionality
2020-09-28 07:40:43 +02:00
Martin Diehl
8ec1014134
Merge remote-tracking branch 'origin/development' into cleaning
2020-09-27 18:11:43 +02:00
Vitesh Shah
e8e1960391
Consistency for docstrings
2020-09-26 18:02:25 +02:00
Vitesh Shah
d0028b2eea
Merge branch 'development' into fix-docstrings-for-sphinx
2020-09-26 17:56:42 +02:00
Martin Diehl
9e3506b8ef
thorougly testing seeding functionality
2020-09-25 07:41:58 +02:00
Philip Eisenlohr
e58cc4bfa0
removed substitute call for direct mapping; added seed from averaging of material ID cloud
2020-09-24 22:06:43 -04:00
Martin Diehl
4960cf43d4
documented and tested
2020-09-24 21:43:04 +02:00
Martin Diehl
e5b414419a
Poisson disc for periodic situation
2020-09-24 21:26:16 +02:00
Martin Diehl
b5ea04424b
Merge remote-tracking branch 'origin/development' into seeds-module
2020-09-24 20:58:53 +02:00
Philip Eisenlohr
8c8db5b99f
switched "Geom.materials" to "Geom.material"
2020-09-23 17:27:15 -04:00
Martin Diehl
b995f34834
Merge branch 'development' into geom-fully-out-of-place
2020-09-23 22:50:20 +02:00
Martin Diehl
8c83566b71
suppress warning
...
we already handle the invalid FPE
2020-09-23 21:10:39 +02:00
Martin Diehl
9bce1ddc29
simplified
2020-09-23 20:48:34 +02:00
Franz Roters
3612b17295
corrected Sphinx warnings
2020-09-23 16:21:20 +02:00
Martin Diehl
c85d27baec
functionality for seed creation
2020-09-23 09:45:36 +02:00
Martin Diehl
ae579d8baa
allow to specify seed IDs explicitly
2020-09-23 09:28:00 +02:00
Sharan Roongta
5a64dd30e1
Merge branch 'development' into modernize-testing
2020-09-23 00:05:59 +02:00
Philip Eisenlohr
683161d479
Merge branch 'development' into geom-fully-out-of-place
2020-09-22 15:22:58 -04:00
Philip Eisenlohr
05835bacd3
removed set_X(), duplicate(), and .homogenization; renamed ".microstructure" to ".materials"
2020-09-22 14:49:28 -04:00
Martin Diehl
716a406361
Merge remote-tracking branch 'origin/master' into modernize-testing
2020-09-22 16:51:36 +02:00
Franz Roters
7801f527f2
Merge remote-tracking branch 'origin/load-save-X-no-suffix' into development
2020-09-22 14:57:39 +02:00
Martin Diehl
5ef761fb98
inform the user about missing items in material.yaml
2020-09-21 19:10:20 +02:00
Philip Eisenlohr
188905766f
removed Geom.get_X() methods in favor of direct property access
2020-09-21 11:13:53 -04:00
Philip Eisenlohr
ca2f3f9493
set_X and add_comments methods now default to out-of-place
2020-09-21 10:29:07 -04:00
Martin Diehl
7bdd44a3d9
consistent names:
...
default file operations: save/load, non-default save_xx/load_xx
2020-09-20 22:04:28 +02:00
Martin Diehl
6ab88aad2b
default format for Table is ASCII
...
hence, renamed load_ASCII/save_ASCII to load/save
2020-09-20 20:45:06 +02:00
Philip Eisenlohr
7cbd422ae3
fixed coprime error when encountering NaN
2020-09-19 13:38:32 -04:00
Martin Diehl
6f45203c98
first version of a pyaml based class for material configuration
...
pyaml is (again) actively maintained and the ruamel.pyaml API is
instable
2020-09-19 13:01:19 +02:00
Martin Diehl
0746a2f3a4
give visual feedback
...
in most tests, this is done manually
2020-09-19 08:33:15 +02:00
Martin Diehl
c42511f101
small polishing
2020-09-18 16:32:59 +02:00
Martin Diehl
f23b89f055
get rid of annoying warning during test
2020-09-18 16:30:22 +02:00
Martin Diehl
c935ba1215
user friendly self reporting
2020-09-18 16:23:23 +02:00
Martin Diehl
1849ff0330
polishing
2020-09-18 15:03:51 +02:00
Martin Diehl
cdf3323774
Merge remote-tracking branch 'origin/development' into load-save-X
2020-09-18 14:21:43 +02:00
Franz Roters
190f8a82d4
Merge branch 'texture-components-in-rotation-class2' into 'development'
...
Texture components in rotation class2
See merge request damask/DAMASK!225
2020-09-18 13:31:42 +02:00
Vitesh
ca689193f6
Merge branch 'new-random-style' into 'development'
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new style for numpy random numbers
See merge request damask/DAMASK!224
2020-09-16 11:12:55 +02:00
Martin Diehl
c71768a37a
polishing
2020-09-16 06:33:17 +02:00
Philip Eisenlohr
ed006d1a89
streamlined fiber/spherical component sampling
2020-09-15 19:12:30 -04:00
Philip Eisenlohr
c6be6fe87f
fixed spherical component sampling and testing
2020-09-15 18:40:05 -04:00
Philip Eisenlohr
82ed546ff7
Merge branch 'texture-components-in-rotation-class2' of magit1.mpie.de:damask/DAMASK into texture-components-in-rotation-class2
2020-09-15 18:14:19 -04:00
Philip Eisenlohr
0a34e342e4
fixed fiber component sampling and testing
2020-09-15 18:14:15 -04:00
Philip Eisenlohr
d6378ec9bc
shortened from_fiber_component algorithm
2020-09-15 16:34:19 -04:00
Martin Diehl
ad2badd3be
[skip ci] vectorized and simplified
...
based on Philips ideas. Test requires from_axis_angle fix
2020-09-15 22:13:28 +02:00
Philip Eisenlohr
d02617c961
fixed normalization of multidimensional axes (from_Rodrigues, from_axis_angle)
2020-09-15 13:09:24 -04:00
Martin Diehl
18c38f1284
polishing
2020-09-15 13:49:44 +02:00
Martin Diehl
2a082b7983
methods for texture component calculations
2020-09-15 12:11:46 +02:00
Martin Diehl
82e41d92ce
new style for numpy random numbers
...
https://numpy.org/doc/stable/reference/random/index.html?highlight=random#quick-start
https://albertcthomas.github.io/good-practices-random-number-generators/
2020-09-15 08:12:02 +02:00
Philip Eisenlohr
2114c51098
revert mistakenly made header length change in array-comparison
2020-09-15 01:47:26 -04:00
Philip Eisenlohr
96ad358f83
modified file reading/writing methods to load_X, save_X formalism
2020-09-15 01:14:05 -04:00
Martin Diehl
b298962101
Merge branch 'development' into table-out-of-place-only
2020-09-14 08:06:44 +02:00
Martin Diehl
f6758ecc28
table class operates out of place
2020-09-14 07:04:01 +02:00
Martin Diehl
a5d5638e4a
allow uncompressed files
2020-09-12 13:46:55 +02:00
Philip Eisenlohr
865c90d00b
first check data type, then determine length of data...
2020-09-09 19:10:03 -04:00
Philip Eisenlohr
7d9a4c08ce
Do not strictly require np.ndarrays for grid, size, or origin when not essential for functionality.
2020-09-10 00:59:40 +02:00
Philip Eisenlohr
9fb3fef4b0
changed British "normalise" to US "normalize" as we (should) follow US English everywhere else.
2020-09-08 10:39:31 -04:00
Philip Eisenlohr
a4785ba562
modified file writing of geom and table to a general to_file() that takes a "format=" argument
2020-09-03 10:53:16 -04:00
Philip Eisenlohr
6785062a10
Merge branch 'development' into 'vtk-to-file-method'
...
# Conflicts:
# python/tests/test_VTK.py
2020-08-31 21:10:29 +02:00
Franz Roters
6986d20b32
Merge branch 'geom-out-of-place' into 'development'
...
Geom methods are now out-of-place, i.e. return an updated duplicate
See merge request damask/DAMASK!203
2020-08-31 12:39:01 +02:00
Martin Diehl
c58693328e
don't try to access folders that don't exist
...
this happened in the case when different types of output exist in
different phases, e.g.
Aluminum: generic, plastic, sources
Steel: generic, plastic
We are a little bit inconsistent because 'generic' and 'plastic' are
always created (even if empty) but 'sources' will only exist if it
contains output. In future, we should have only folders that actually
contain data
2020-08-28 12:45:41 +02:00
Franz Roters
9457435612
Merge branch 'polishing-for-release' into 'development'
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Polishing for release
See merge request damask/DAMASK!206
2020-08-27 17:01:43 +02:00
Martin Diehl
94797f8325
ignore all kinds of FPE
2020-08-27 09:32:49 +02:00
Martin Diehl
c5761831e2
more meaningful message
...
if add_xxx (Results) does not find matching datasets, inform the user
about this fact instead of saying
TypeError: object of type 'IMapUnorderedIterator' has no len()
2020-08-27 00:14:37 +02:00
Philip Eisenlohr
c2191fd930
Make logic to mask (outside of) primitive more apparent (hopefully).
2020-08-27 00:06:52 +02:00
Martin Diehl
229f6139c8
better user experience
...
- no meaningless warnings regarding floating point precision
- meaningful error message for invalid header
2020-08-26 23:54:56 +02:00
Philip Eisenlohr
b9f1421c6b
[skip ci] removed unnecessary line continuations "\"
2020-08-26 17:27:08 -04:00
Philip Eisenlohr
3f24d16603
renamed VTK.write() to VTK.to_file()
2020-08-26 16:15:15 -04:00
Philip Eisenlohr
da46e5ea9a
cannot use np.linalg.norm when dealing with exponent triple
2020-08-26 15:49:25 -04:00
Philip Eisenlohr
06b524d13e
added 'iso' as possible lattice (with no symmetry)
2020-08-26 21:39:20 +02:00
Sharan Roongta
68c2908ba8
Merge branch 'rename-hdf5-output' into development
2020-08-26 12:34:56 +02:00
Martin Diehl
bf401e56cf
avoid name clash with damask.Geom
2020-08-25 09:56:24 +02:00
Martin Diehl
800dac5d01
correct type handling
...
no reason to calculate fill twice
2020-08-25 08:47:24 +02:00
Martin Diehl
96d4975fc4
using numpy functionality
2020-08-25 08:34:04 +02:00
Martin Diehl
51da632108
aiming at testing each individual statement
2020-08-25 07:49:56 +02:00
Martin Diehl
2d98325fa4
increasing test coverage
2020-08-25 01:21:17 +02:00
Martin Diehl
2751cdb6af
support comments also in vtr
2020-08-25 00:40:14 +02:00
Martin Diehl
9a2ac31545
explicit is better then implicit
2020-08-24 23:35:46 +02:00
Martin Diehl
0ceba2a6d3
use central functionality
2020-08-24 23:28:26 +02:00
Martin Diehl
71e08ea66a
small fixes:
...
- numpy has multiple float variants
- start renaming microstructure -> materialpoint where it does not hurt
- no need for type check if comparing against set of valid directions
(or I miss some corner cases)
2020-08-24 23:23:47 +02:00
Philip Eisenlohr
2560f014a3
Merge remote-tracking branch 'origin/increase-geom-test-coverage' into geom-out-of-place
2020-08-24 17:17:31 -04:00
Martin Diehl
55443a3ff5
reflect change of variable names in file layout version
2020-08-24 22:54:09 +02:00
Martin Diehl
279d43ccc6
include version info + date in comments (Table class)
2020-08-24 19:04:59 +02:00
Martin Diehl
9d505c8518
better readable
...
- more explicit reporting
- always relative import for DAMASK
2020-08-24 09:58:24 +02:00
Martin Diehl
0d3ef29554
more logical encapsulation
...
- getting data out of VTK is a functionality of the VTK class. Need to
discuss whether the VTK class should also provide grid and size (works
only for rectilinear grid, so hiding VTK type is not possible
anymore), but the current situation requires the Geom class to rely on
'internals' of the VTK class
- header is specific to *.geom format, not to Geom objects.
2020-08-24 06:46:22 +02:00
Martin Diehl
507a165733
functionality for getting data
...
- handy for Geom class, but could be of general interest
- add/set/get comments: follows same functions as for Geom class
2020-08-24 06:40:36 +02:00
Philip Eisenlohr
446ac03b07
All geom methods are now out-of-place, i.e. return an updated duplicate (to allow for daisy chaining).
...
* Added comments when methods acted.
* Added diff method
* Added flip method
* Fixed add_primitive inversion bug (again...)
* Fixed cell centering bug in add_primitive
* Added missing tests
2020-08-23 19:43:46 -04:00
Martin Diehl
44015082a3
dead code (copy and paste error)
2020-08-24 00:34:07 +02:00
Martin Diehl
9867830d68
store history of geometry modifications
2020-08-23 23:52:48 +02:00
Martin Diehl
a1c78b778a
WIP: track history in VTK objects
2020-08-23 23:22:53 +02:00
Martin Diehl
7b50a3b364
material.config is not used anymore
2020-08-23 15:20:11 +02:00
Martin Diehl
d65371d42f
removed unused and untested functionality
...
PEP 20: Explicit is better than implicit.
2020-08-23 12:55:55 +02:00
Martin Diehl
6f79573140
more test coverage
2020-08-23 11:05:56 +02:00
Martin Diehl
07af7b2f98
geom is written to vtr exlcusively, not to general vtk
...
base tests on vtr
2020-08-23 10:50:15 +02:00
Martin Diehl
64e7582e8e
consistent interface to ndimage filters
...
Boolean 'periodic' sets mode to 'wrap' or 'nearest'
2020-08-23 10:02:22 +02:00
Martin Diehl
975db01f31
microstructure -> materialpoint
...
at least for new functionality
2020-08-23 09:38:08 +02:00
Martin Diehl
5fb2d30ee4
fast and for arbitrary type
2020-08-23 09:02:17 +02:00
Martin Diehl
b731b1e768
Geom.to_vtk improvements
...
- should be integer
- should have a test
2020-08-23 08:49:49 +02:00
Philip Eisenlohr
2b09a7d31d
fixed Geom.canvas bug, added Geom.from_vtk, added mode,selection options to Geom.clean
2020-08-22 21:36:11 -04:00
Philip Eisenlohr
499ce01748
added Geom.copy() method
2020-08-22 13:57:31 -04:00
Martin Diehl
ff7eed4477
(unified) type hints
2020-08-08 20:56:17 +02:00
Martin Diehl
55a620b378
migrating to library
2020-08-08 20:14:30 +02:00
Martin Diehl
a0e0f28e51
migrating shell scripts to library
2020-08-08 19:42:34 +02:00
Martin Diehl
5fcff876f9
replace selectively
...
useful for vicinity_offset and add_primitive
2020-08-08 18:41:47 +02:00
Martin Diehl
56eb57d253
homogenization will be removed soon, stop reporting it
2020-08-08 18:24:17 +02:00
Karo
7824a61f2e
Merge branch 'user_defined_add_calculation' into 'development'
...
User defined add calculation
See merge request damask/DAMASK!195
2020-08-06 00:53:16 +02:00
Philip Eisenlohr
ce00371f52
fixed rounding bug and updated reference images
2020-08-05 10:44:10 -04:00
Philip Eisenlohr
e4103564a9
16bit color index; proper rounding of index values
2020-08-05 10:08:48 -04:00
Philip Eisenlohr
e73ffd6da9
fixed and condensed lo,hi range assignment
2020-08-04 20:29:27 +02:00
Martin Diehl
e07c00a592
polishing + simple test
...
autoscaling seems to be broken
2020-08-04 20:14:04 +02:00
Philip Eisenlohr
84551c9d1e
integrated former imageData functionality as "shade" method
2020-08-04 13:05:30 -04:00
Martin Diehl
ae20f5ffe6
attempt to fix parallel writing on MacOS
...
should resolve TypeError: cannot pickle
'vtkmodules.vtkIOXML.vtkXMLRectilinearGridWriter' object error
2020-08-03 18:19:38 +02:00
Martin Diehl
a9f53f4822
non-vectorized formulas can be implemented in a user functionc
2020-07-31 17:04:14 +02:00
Martin Diehl
50d7842dbe
more tests
2020-07-31 16:50:01 +02:00
Martin Diehl
aadce1e554
Merge branch 'development' into user_defined_add_calculation
2020-07-31 16:15:31 +02:00
Martin Diehl
4860f9c9ce
drop support for parallel marc versions
...
can still be handled by the user, but is a niche use case
2020-07-18 09:51:53 +02:00
Martin Diehl
2bbd68d964
with_suffix strips .1 from 2019.1
2020-07-16 09:33:17 +02:00
Martin Diehl
199ec51bf8
typo
2020-07-15 21:59:43 +02:00
Martin Diehl
9225d439ab
object oriented path handling
2020-07-15 21:58:24 +02:00
Martin Diehl
fa7f7e6fa4
don't complain if ssh without -X/-Y
2020-07-15 21:19:09 +02:00
Martin Diehl
333e840b09
standard behavior
...
most modules have an __version__ attribute
2020-07-15 20:57:56 +02:00
Martin Diehl
6259984e93
simplified
...
complicated, but allows to use functions as properties
2020-07-15 20:54:37 +02:00