9240dd59b2
mark as internal
...
all functionality (+ sanity checks) can be done with the class
functionality
2020-05-20 11:11:07 +02:00
9694767997
all seems to work now
2020-05-20 09:01:38 +02:00
1d8903bb0c
transition code
2020-05-20 00:18:44 +02:00
1fa4a07bb8
for backward compatibility
2020-05-19 23:39:01 +02:00
3e00269179
again some more tests
2020-05-19 23:24:12 +02:00
1c53a37de4
more tests and adjustments to tolerances
2020-05-19 21:03:30 +02:00
a6b0aaffba
more tests
...
Hotfix needed for axis angle to matrix (not used in DAMASK, needs
further investigation)
2020-05-19 19:41:50 +02:00
de79a5af43
directly test the internal conversions
...
some work to do ...
2020-05-19 09:55:23 +02:00
065c624f94
fix for backward compatibility
2020-05-19 09:10:14 +02:00
ebf05a279e
standard name
2020-05-19 08:59:03 +02:00
1a3a4a800e
vectorized
2020-05-19 07:59:24 +02:00
b6eebcd704
small fixes (testing P=+1)
2020-05-19 07:57:40 +02:00
b200894a40
bugfix and further test
2020-05-19 07:57:40 +02:00
3dc90ddb94
use the formula from the paper, not from the reference implementation
...
a few multiplications should be faster than a transpose
2020-05-19 07:57:40 +02:00
a25dd1c438
cleaning
2020-05-19 07:57:40 +02:00
743e91a78d
cleaning
2020-05-17 08:01:34 +02:00
652ece6bb3
fix: wrong capitalization
2020-05-17 07:25:17 +02:00
2550447169
Merge branch 'development' into docstring-sphinx-adjustments
2020-05-17 00:10:58 +02:00
a90865c877
non-vectorized versions not needed anymore
...
using them only for testing purposes
2020-05-17 00:10:18 +02:00
9ba419c2c3
Merge branch 'development' into vectorize_rotation
2020-05-16 20:58:06 +02:00
a4dfd7fc74
missing tests
2020-05-16 17:23:05 +02:00
044f069437
bugfix: selected wrong data
2020-05-16 17:06:55 +02:00
a279785149
Merge branch 'development' into misc-improvements
2020-05-16 17:01:48 +02:00
61ac40c259
more tests
2020-05-16 13:54:53 +02:00
19638168e6
more sensible type checking and errors
2020-05-16 13:23:32 +02:00
9fa1539163
using new names
2020-05-16 11:17:12 +02:00
235f3c0df7
bugfix: copy and paste error
2020-05-16 11:16:52 +02:00
e2ba294b75
bugfix: wrong variable
2020-05-16 09:40:32 +02:00
2dc46b783a
simplified and tested
2020-05-16 00:58:40 +02:00
dc508cdfce
Merge remote-tracking branch 'origin/misc-improvements' into vectorize_rotation
2020-05-15 23:25:42 +02:00
3fd868dc45
Merge branch 'development' into vectorize_rotation
2020-05-15 23:25:36 +02:00
b5b9bfaa99
need space at end of definition list
2020-05-13 11:36:16 +02:00
66b928c5af
using doctest style
...
https://docs.python.org/3/library/doctest.html
https://numpy.org/doc/stable/docs/howto_document.html#sections (section
15)
2020-05-13 10:47:49 +02:00
6f3b526811
Merge branch 'development' into docstring-sphinx-adjustments
2020-05-13 10:38:45 +02:00
90f93d2399
Merge branch 'integrate-lambert' into 'development'
...
Integrate lambert
See merge request damask/DAMASK!166
2020-05-12 23:36:08 +02:00
6928a8290f
less whitespace,
...
alingment only within one vector/tensor
2020-05-10 13:02:26 +02:00
c8701a4665
Cleanup/better readability
2020-05-08 12:15:10 +02:00
b75e98ca3f
forgotten debug statements
...
+ polishing of XDMF output
2020-05-07 19:12:05 +02:00
c2b4f5516e
DADF5_postResults tries to combine datasets, this does not work
2020-05-07 00:14:14 +02:00
fcd0028b83
avoid line length limit (maximum line length 182 > 132
2020-05-06 14:33:04 +02:00
d977f2ad25
already merged
2020-05-06 14:26:54 +02:00
26f55781ae
merge test into gridFilters
2020-05-06 14:26:15 +02:00
a122a307b9
div test done
2020-05-06 14:14:18 +02:00
d4091a21a8
grad test done
2020-05-06 13:05:53 +02:00
8b4baecdee
better looking test fields
2020-05-06 12:54:24 +02:00
bd518b2806
test_curl done
2020-05-06 12:44:56 +02:00
9626833339
Merge branch 'development' into pytest-curl-div-grad-2
2020-05-05 22:45:30 +02:00
ef4a4dad4a
shape property and numpy-like broadcasting
...
this makes it easy to apply a single rotation to a field
2020-05-05 14:44:08 +02:00
eeb0df3a55
do not store absolute path
2020-05-05 10:42:54 +02:00
307debebd4
Correct shapes for gradient calculations
2020-05-05 10:22:23 +02:00
31c397255d
equivalent (for a valid DADF5 file) but faster
2020-05-05 10:18:48 +02:00
0650f46ab1
Tests for gradient
2020-05-05 10:13:30 +02:00
14cdc031e0
write XDMF files
...
the limitation to scalar, 3-vector and 3x3-tensor comes currently from
XDMF/vtk/paraview
extension to multiple constituents and unstructured meshes might be
possible
2020-05-05 09:57:22 +02:00
6e99956b58
Merge branch 'development' into misc-improvements
2020-05-05 09:22:53 +02:00
5f3f87cd68
vectorizing cubochoric conversions
2020-05-04 17:43:38 +02:00
7d1e0850ab
test + resulting bug fix
2020-05-03 17:04:03 +02:00
5d4b554b00
WIP: vectorizing
2020-05-03 07:48:13 +02:00
c241eaec15
rely on correct input data
2020-05-03 07:23:46 +02:00
f0bb50b97d
vectorized rotation function
2020-05-02 15:22:17 +02:00
c7a77ebc26
Merge branch 'development' into integrate-lambert
2020-05-02 09:21:42 +02:00
2df78e4e2f
vecorized pyramid function for lambert projection
2020-05-02 09:17:31 +02:00
b88f5ec0c8
clean up
2020-05-01 14:53:40 +02:00
ce9bdc50a4
common variable names
2020-04-29 14:46:58 +02:00
9e79935add
Merge branch 'development' into less-shell-scripts
2020-04-28 20:43:16 +02:00
9273c88782
[skip ci] WIP: migrating from PRIVATE repo
2020-04-28 09:42:27 +02:00
2d14790863
the result of a differential operator operating on a constant field is 0
2020-04-27 05:08:47 +02:00
6864b9525d
go back to original dir as soon as possible
2020-04-26 14:52:27 +02:00
f02c77b6d0
more reasonable tolerance
...
still relatively high because ctf files store position with constant
number of digits and floating dot. Hence, the precision is very low
2020-04-24 20:01:57 +02:00
1610d5a5d2
Merge branch 'development' into misc-improvements
2020-04-24 20:01:40 +02:00
707324887f
inform the user about planned functionality
2020-04-24 06:52:09 +02:00
042f64200c
Merge branch 'development' into vectorize_rotation
2020-04-24 06:31:14 +02:00
898cf42aca
Merge branch 'fix-grid-convention' into 'development'
...
Fix grid convention
See merge request damask/DAMASK!160
2020-04-23 19:02:23 +02:00
cc3fa156cf
support change of directory one object has been created
2020-04-23 16:29:20 +02:00
a0b7c51bec
less strict tolerances
...
grid position reported by EBSD has only a few decimal places, so
rounding errors occur
2020-04-22 23:32:34 +02:00
8ba547a1b5
no need for an extra file
2020-04-22 13:23:50 +02:00
a39e6b7af9
hide internal variables
2020-04-22 13:12:30 +02:00
3621dddd66
test deviatoric part for known analytic solution
2020-04-22 09:16:53 +02:00
53b8c1c893
simplified
2020-04-22 08:58:43 +02:00
a8c6fdd9ba
for the sake of completeness
2020-04-22 07:40:02 +02:00
7efe14be35
Merge branch 'development' into vectorize_rotation
2020-04-21 19:29:30 +02:00
97a5880d76
ensure correct shape
2020-04-21 13:22:55 +02:00
75d7238376
vectorized as_XXX
2020-04-21 12:27:50 +02:00
ae3eca5f98
fix for vectorized from_random
2020-04-21 12:08:16 +02:00
ac75b9e4ca
improved reporting + test
2020-04-21 11:17:15 +02:00
23fc58699f
vectorize Rotation.fromXXX functions
2020-04-21 10:55:45 +02:00
4a05cdbbbb
copy and paste error
2020-04-21 03:26:26 +02:00
528378eba2
polishing/bugfix
...
* HDF5 data has x fast, therefore reshape needs to be aware of 'F' order
* Datatype for True/False is 'bool' in python, not 'Boolean'
2020-04-20 22:51:51 +02:00
00cb17ccfa
commenting
2020-04-20 22:47:55 +02:00
93db1b37ca
some useful information
2020-04-20 22:32:13 +02:00
25d29bf438
no need for Fortran order forward/backward
2020-04-20 20:24:55 +02:00
1ccda22ae3
nothing to flatten here
2020-04-20 20:16:25 +02:00
4db91fff03
simplified
2020-04-20 20:14:27 +02:00
f519e62cd5
testing data layout checks
2020-04-20 13:56:33 +02:00
02dde3c255
test also invalid operations
2020-04-20 13:10:13 +02:00
9979eb58f4
consistent layout for grid data
...
has now always the shape ([x,y,z,...]) with x fastest. For conversion from or
to linear layout ([x*y*z,...]), e.g. storage in ASCII table, reshape needs
to have the 'F' option.
Credits to Vitesh and Fran for pointing this out.
2020-04-20 13:09:59 +02:00
bce5ed62d5
polishing
2020-04-20 10:13:15 +02:00
e3958263e3
Merge branch 'development' into misc-improvements
2020-04-15 21:03:51 +02:00
03aa6f9c80
Merge branch 'vectorize_rotation' into development
2020-04-14 19:34:11 +02:00
d3eba41519
[skip ci] fixed bug of double execution of np.degrees in asAxisAngle
2020-04-14 12:22:41 -04:00
69857176b2
search and replace error
2020-04-14 15:33:20 +02:00
93c75cada3
numpydoc style
2020-04-12 15:38:38 +02:00
aaeec16c66
proper indentation for sphinx
2020-04-12 15:34:29 +02:00
b6b98bd14f
more meaningful
2020-04-12 15:20:09 +02:00
c6c1878b13
asterisk is the emphasize sign for restructured text
...
not really needed here
2020-04-12 15:19:32 +02:00
3d10266fbc
similar style as for other conversions
2020-04-12 01:29:11 +02:00
04fbc38a4b
keep namespace clean and avoid overwriting in fromXXX functions
2020-04-12 01:19:11 +02:00
f41a47ce8b
polishing and slightly stricter tolerances
2020-04-11 23:27:25 +02:00
c0c37fe6a5
polishing
2020-04-11 20:42:46 +02:00
c57f96cd6e
also missing
2020-04-11 18:32:06 +02:00
8c61f67e34
cleaning
2020-04-11 18:24:54 +02:00
296a75d452
where not needed
2020-04-11 18:00:59 +02:00
fac33ec408
polishing
2020-04-11 17:23:54 +02:00
51104bfc13
do not transpose for the standard case
2020-04-11 17:19:12 +02:00
cb9daccdd7
homochoric representation vectorized
2020-04-11 16:14:40 +02:00
99655c9f61
more vectorized functions
2020-04-11 13:59:16 +02:00
4e759d6c98
more tests for orientation conversion
...
ensure that all parameters are within range and check if
multidimensional arrays at least run
2020-04-11 12:37:21 +02:00
3bfa2d679c
simpler/correct logic for eu2om
2020-04-11 11:36:37 +02:00
59b0a6e825
tuples not needed/avoid eval
2020-04-10 13:07:05 +02:00
656c0199cf
sorted and make explicitly available what we need
2020-04-10 12:32:33 +02:00
9837390406
do not clutter namespace
...
we do not need damask.util.np etc
2020-04-10 12:30:39 +02:00
9c0ea13e4f
Merge branch 'development' into misc-improvements
2020-04-10 08:14:33 +02:00
bab3581b11
need to transpose eigenvectors to find the correct one
2020-04-09 15:01:01 +02:00
e502573e05
polishing
2020-04-09 14:20:43 +02:00
b025c1838e
simplified
2020-04-09 12:52:12 +02:00
cbfde73a29
more testing and related fixes
2020-04-09 07:40:20 +02:00
43e7639f77
WIP: implementing orientation matrix conversions
2020-04-09 00:47:43 +02:00
da30fb8396
qu(aternion) and eu(ler) vectorized and tested
2020-04-09 00:35:40 +02:00
464620b796
vectorized conversion from ax(is angle)
2020-04-08 21:24:59 +02:00
2a063b3bb5
relaxed tolerance not needed
2020-04-08 20:23:05 +02:00
59e0041fd7
more scatter, slightly reduced tolerance
2020-04-08 19:30:50 +02:00
3cd8f3d9a0
testing special orientations with scatter
2020-04-08 18:38:57 +02:00
1ba01ba0db
adjusting tolerances
2020-04-08 18:15:50 +02:00
f365ae104d
adjusting tolerances
2020-04-08 17:55:05 +02:00
10d5b2e791
testing some special cases
2020-04-08 13:41:46 +02:00
8f88480790
better readable error messages
2020-04-08 12:59:34 +02:00
b6f5548d8a
correct normalization at the corners
2020-04-08 12:23:28 +02:00
4e06e9a410
improved numerical stability for corner cases
2020-04-08 11:52:26 +02:00
ccf62ede52
bugfix for Cubochoric
...
forward and backward mappings are different
2020-04-08 11:41:42 +02:00
fbd61fda99
ignore comments
2020-04-02 11:54:34 +02:00
01818cba80
tuples not needed for single arguments
2020-03-31 12:44:39 +02:00
6ef7410e5a
testing VTK wrappers
2020-03-31 11:04:06 +02:00
2f52165e0a
for test coverage reports using pytest
2020-03-30 22:14:45 +02:00
396d428af7
bugfix: works for all cuboids, not just cubes
2020-03-29 23:09:43 +02:00
e334674a06
test bycristal tessellation
2020-03-29 20:28:54 +02:00
9c90aa5acb
polishing
2020-03-29 20:07:09 +02:00
e61c1a027b
avoid detour via shell
2020-03-29 19:12:23 +02:00
bbce3456e8
advise from pylint
2020-03-22 22:30:38 +01:00
1dfdd264b7
small flaws detected by pylint
2020-03-22 16:31:14 +01:00
b6d50db177
do not use name of function
2020-03-22 16:21:49 +01:00
1e178287fe
4 space indentation
2020-03-22 16:13:35 +01:00
76caf422aa
bugfix: wrong indentation
...
strange that python has accepted that
2020-03-22 15:59:25 +01:00
3873a3d20d
restoring working structure for config submodule
2020-03-21 22:17:07 +01:00
4decae967a
nothing to inherit ..
2020-03-21 20:18:46 +01:00
c6025925ac
relative imports within damask package
2020-03-21 20:17:50 +01:00
c5e956f386
solver submodule structure working again
2020-03-21 20:14:15 +01:00
bcf3650211
slightly shorter.
...
w/o transpose, this seems to be more memory efficient
2020-03-21 19:40:49 +01:00
71da974bdc
quick prospector fixes for deprecated class
2020-03-21 18:29:42 +01:00
67f64b7a7a
polishing
2020-03-21 18:01:26 +01:00
20a06840b0
works also for arrays ...
2020-03-21 11:07:21 +01:00
2ad86e4202
shortened
2020-03-20 23:47:54 +01:00
eb66db9c36
Merge branch 'no-python-namespace-clutter' into MiscImprovements
2020-03-20 23:46:37 +01:00
76984a4dbd
more sensible check
...
works also for numpy arrays. Not sure why the old way is considered to
be "pythonic", I think it can just cause trouble
2020-03-20 23:42:23 +01:00
4d4f321872
following python convention
2020-03-20 08:49:33 +01:00
0556827f29
less error prone
2020-03-19 20:19:47 +01:00
892b7eee98
consistency check and new test
2020-03-19 17:34:49 +01:00
705694b97c
fix for test
2020-03-19 15:54:57 +01:00
e390982be7
clean first level structure
2020-03-19 15:19:11 +01:00
899cc913c4
python style names
2020-03-19 15:09:05 +01:00
327899890a
this works for internal
2020-03-19 15:06:25 +01:00
9bb0608187
maybe this is the cleaner way
2020-03-19 14:40:30 +01:00
c1d82197ad
cope with integers
2020-03-19 13:27:23 +01:00
0ebc5ab60e
no need to import modules, hide unwanted functions
2020-03-19 13:16:32 +01:00
27532cfa4e
small fixes
2020-03-19 12:03:55 +01:00
91e728d065
polishing
2020-03-19 11:30:36 +01:00
a80622292e
simplified (and working)
2020-03-19 10:59:53 +01:00
7093647af5
clearly show intention
2020-03-19 09:04:36 +01:00
0871111c11
consistent and correct number of leading zeros
2020-03-19 08:45:25 +01:00
b5899b51e1
do not show tk window on start(python) or exit(Ipython)
2020-03-19 08:31:24 +01:00
d6f74daf53
cleaning
...
no DADF5 anymore
2020-03-19 08:13:13 +01:00
fbd92599e8
also accept vtkRectilinearGrid etc as type
2020-03-19 08:04:15 +01:00
6d0c4b9765
typo
2020-03-19 08:00:13 +01:00
d28df815f0
Merge branch 'development' into MiscImprovements
2020-03-19 07:30:03 +01:00
7d47418381
migrating to new Table class ...
...
... and stripping old ASCIItable down
2020-03-19 07:27:11 +01:00
f7a6ac4a0e
migrating to new table class
2020-03-19 07:27:11 +01:00
cbe5944390
cleaning deprecated modules
2020-03-19 07:27:11 +01:00
2b777bbbea
use "None" to indicate missing data
...
True/False are user based decisions
2020-03-18 14:29:59 +01:00
ee0d80ce2a
following python standard + polishing
2020-03-18 13:49:53 +01:00
45e3b8f7c6
no brackets for reshape required
2020-03-17 12:25:44 +01:00
25b3fa4427
image data seems to work in general with python3 ...
...
... after fix for colormaps
imageDataDeformed is based on the core module, i.e. it has not been used
for years. Either update soon or remove
2020-03-17 11:53:59 +01:00
bb90539f7c
only ignore temporary files in the respective folders
2020-03-16 22:50:09 +01:00
794d7e485e
bugfix: report again correctly
2020-03-16 22:50:09 +01:00
941a9fbff4
fixing prospector complaints
2020-03-14 22:56:13 +01:00
554631d554
whitespace adjustments
2020-03-14 22:31:36 +01:00
f9aea736cb
there is a function for that
2020-03-14 22:26:47 +01:00
6dcb5b0d0d
vectorize
2020-03-14 22:24:45 +01:00
0becd8c20b
not needed
2020-03-14 22:21:31 +01:00
b4679fabfc
whitespace cleaning and other polishing
2020-03-14 22:17:59 +01:00
5c4ddf5138
Merge branch 'development' into MiscImprovements
2020-03-14 12:52:30 +01:00
3d8e8cfe7a
tkinter might not work
2020-03-14 00:07:49 +01:00
771663c944
polishing
2020-03-13 00:30:49 +01:00
81e98055dd
polishing
2020-03-12 19:52:33 +01:00
6fbace8220
stub: show rendered geometry
2020-03-12 15:10:44 +01:00
827f354435
only store points, no vertices
...
visualize via 'Points Gaussian', not 'Points' in paraview.
+ adding displacements for points
2020-03-12 12:28:28 +01:00
4c915eddbc
inform the user
2020-03-12 08:30:33 +01:00
dafc48dcc7
polishing
2020-03-12 08:22:37 +01:00
a6a73cdc0f
polishing
...
grid is interpreted again in the DAMASK meaning, i.e it specifies the
number of cells, not the number of nodes
2020-03-12 06:54:40 +01:00
bb2019810a
centralizing functionality
2020-03-12 00:00:47 +01:00
575da581a9
support for point cloud
2020-03-11 22:35:58 +01:00
744e3bb50b
vectorized cell assignment + bugfix for writing out
2020-03-11 21:29:24 +01:00
f324e67f7b
fix: nodes need to be converted to vtk type
...
some stub definitions
2020-03-11 18:08:58 +01:00
c92a6ad459
simpler
...
and system independent
2020-03-11 07:50:11 +01:00
32734e7dce
using central functionality
2020-03-11 07:42:32 +01:00
b3e8a4405e
better use centralized functionality
2020-03-11 06:50:13 +01:00
a024ec378a
new class should be accesible as damask.VTK
2020-03-11 06:49:14 +01:00
9878ddc550
easier way to show data.
...
needs information on geometry (structured/unstructured) and probably we
should list not more than 5 incs
2020-03-11 06:28:13 +01:00
8a4bc3dda4
separating vtk from results
...
we should discuss the naming!
2020-03-10 23:53:37 +01:00
c43af6aac3
Merge branch 'development' into HDF5-results
2020-03-10 23:32:41 +01:00
a7f5e42c2e
condensed if-else
2020-03-10 22:13:21 +01:00
bffce1ab9c
use "nan" to represent np.nan in ASCIItable output
2020-03-09 18:50:27 -04:00
b2abaef0b3
added placing of data within geometry
2020-03-09 18:31:00 -04:00
9bfaf4fbfb
it is RodriGues, not RodriQues
2020-03-09 13:58:10 +01:00
32378fa609
simpler use of progress bar
...
now written as class (avoids the managing of function attributes) which
is used as a small wrapper around a loop.
ETA is shown, based on datetime class which hast nice formatting
2020-03-09 13:44:08 +01:00
20caa29b5d
corrected "Rodrigues"
2020-03-06 00:53:11 +01:00
7a0c20b6de
Merge branch 'development' into python-style
2020-03-05 22:00:58 +01:00
c06ef00fe2
[skip ci] N_threads is not correct, we use processes
2020-03-03 14:57:48 +01:00
16b4a63c58
clearly separating deprecated functions
...
still there since some test rely on them
2020-03-03 14:38:32 +01:00
946231cda5
indentation adjustment
2020-03-03 14:24:27 +01:00
903af10aa7
allow to iterate over times/increments
2020-03-03 14:07:02 +01:00
c33cca3351
polishing, takeover from dadf5-usability branch
2020-03-03 12:50:10 +01:00
1f3d5099cf
quote still needed
2020-03-03 12:32:38 +01:00
b1f21b189b
removing unused functionality
...
should simplify transition to new table class
2020-03-03 08:28:57 +01:00
c360785217
single source of truth
2020-03-03 08:04:14 +01:00
edd143b423
bugfix for copy and paste error
...
introduced in 8798dd1af3
2020-03-03 07:00:14 +01:00
192f21df37
4 space indentation
2020-03-03 06:49:46 +01:00
88e8907031
deprecated and not used by any test
2020-03-02 23:52:40 +01:00
8798dd1af3
new names consistently used
2020-03-02 23:47:29 +01:00
00028724b8
type is float for empty element in prod, should always be int
2020-03-02 23:20:36 +01:00
0034289b1b
S is 2. PK stress, T_sym is clearer
2020-03-02 23:14:59 +01:00
15c3cab549
clearer names
2020-03-02 23:11:05 +01:00
4970f22e13
better name
...
damask.Result is more appropriate then damask.DADF5
2020-03-02 23:05:35 +01:00
08aef5531c
Merge remote-tracking branch 'origin/development' into MiscImprovements
2020-03-01 07:32:00 +01:00
ed2489de9a
not needed anymore
2020-02-29 19:57:37 +01:00
f431dd2092
geom class is better suited than asciitable class
...
removing unused functionality from deprecated asciitable
2020-02-29 19:31:27 +01:00
334eb93421
infere data type automatically
...
need for IPF color autput
2020-02-27 21:19:56 +01:00
75528064e9
Merge branch 'development' into DADF5-multiprocessing
2020-02-25 17:58:07 +01:00
1683e18c1f
keep order
...
mainly relevant for increments
2020-02-25 11:53:02 +01:00
f256493e79
fixed indentation
2020-02-22 01:05:02 +01:00
9d4cbe5168
4 space indentation
2020-02-22 00:19:27 +01:00
fd11f073f0
fixing prospector complaints
2020-02-22 00:11:00 +01:00
a6279c8284
use separate test definitions per class
2020-02-22 00:03:54 +01:00
Martin Diehl