94b6be4e83
preferred way to say that something needs to be implemented
2021-05-29 10:54:34 +02:00
f435a1bea4
include in documentation
2021-05-28 21:06:02 +02:00
46dc6b4dab
functionality to add field data on regular grids
...
allows to add curl, divergence, and gradient to results from the grid
solver
2021-05-28 15:38:00 +02:00
e431d89957
polishing
2021-05-28 13:20:56 +02:00
dd4612dd9b
support singular names
...
e.g. self.iterate('phase')
2021-05-28 08:06:58 +02:00
89fc2f05cf
no need to attach static data
...
if needed, a 'kinematics' function that provides slip direction and
plane normal rotated according to the orientation would be helpful
2021-05-27 20:23:22 +02:00
bfc3fe410f
no direct connection to Orientation object
2021-05-27 19:10:23 +02:00
f7e1aad147
single source of truth
2021-05-27 18:44:20 +02:00
545a085c93
no need to hide, just add suffix to avoid clash with string argument
2021-05-27 18:41:42 +02:00
adb1e51e24
support for 2D tensor in load case
...
currently optional, but should become mandatory after a transition
period
2021-05-26 08:04:14 +02:00
40698740aa
fixed symmetry handling
...
- ort not tested, no examples, no documentation => removed
- aP is the opposite of isotropic => removed
isostropic materials can be easily specified as cI or cF, using C_44 =
1/2 * (C_11 - C_12). Acceptable extra effort for special use case
orthorhombic can be easily implemented if needed, but needs test,
documentation, and examples
2021-05-24 15:45:25 +02:00
0b80252d97
Merge remote-tracking branch 'origin/123_bccSlipSystem' into development
2021-05-22 22:40:33 +02:00
fa3b077b72
Merge remote-tracking branch 'origin/development' into internal-restructure
2021-05-21 12:32:59 +02:00
10c6070873
added {123} slips systems of bcc
2021-05-20 18:45:15 +02:00
125e8fb9e2
Merge remote-tracking branch 'origin/development' into internal-restructure
2021-05-20 10:41:59 +02:00
edb7834404
typo
2021-05-20 10:30:00 +02:00
2648464525
relax tolerances for quaternion initialization
...
we read in ASCII/YAML files, 1e-8 must be enough
2021-05-19 09:46:02 +02:00
85ecb68b8f
Merge remote-tracking branch 'origin/development' into MatrixInteraction_clean
2021-05-11 06:00:16 +02:00
d6e69d5d4b
[skip ci] polishing of doc string
2021-05-10 14:44:58 -04:00
053c427509
adjusting to new interaction matrices
2021-05-09 14:50:55 +02:00
bc8a03b392
Merge branch 'python-polishing' into lattice-into-orientation
2021-05-07 22:04:25 +02:00
9c9286a4be
no connection to the class
2021-05-07 21:51:11 +02:00
cb8dbf6eda
simplified
2021-05-07 21:33:48 +02:00
a48fa5d797
better readable and documented
2021-05-07 20:07:59 +02:00
8626f6c047
hide imported modules in autocompletion
2021-05-06 15:00:03 +02:00
b1ad8197f2
object oriented approach
...
Orientation (of special lattice) should not have generic attributes
Also, import at the beginning of the file
2021-04-29 20:59:54 +02:00
b061b4911d
compatible with older scipy versions
2021-04-29 08:58:32 +02:00
3c41cd609f
Merge branch 'development' into env-reporting
2021-04-29 08:40:29 +02:00
00bc6a9031
4 threads as default. Reasonable for modern computers
...
hardcoded + and as shell variable
2021-04-28 20:26:25 +02:00
ff8ce3840b
handle infinite loop
2021-04-28 08:03:22 +02:00
e9cfb2f968
Merge branch 'drop-old-DADF5-support' into 'development'
...
Improvements to damask.Result
See merge request damask/DAMASK!373
2021-04-27 00:33:41 +00:00
ba938f1746
need to check for isinstance(int)
2021-04-26 17:56:15 -04:00
5567512f73
removed unnecessary f-strings; added any -x to increments view
2021-04-26 14:26:16 -04:00
b1bbe5528b
[skip ci] fixed mistake (R --> Q) in example
2021-04-26 17:09:11 +00:00
55333f7e3e
Merge branch 'no-shell-variables' into 'development'
...
KISS: no shell variables
See merge request damask/DAMASK!370
2021-04-26 15:48:58 +00:00
de79d2d897
test handling of Marc results
2021-04-26 00:28:39 +02:00
62c987badf
add tracer to vtk files
2021-04-25 23:54:33 +02:00
68a839ed97
typo + improved help
2021-04-25 22:14:13 +02:00
d4a46b9be8
Merge remote-tracking branch 'origin/development' into drop-old-DADF5-support
2021-04-25 17:34:14 +02:00
0459f17f58
improved usability
2021-04-25 07:58:15 +02:00
18aa6f7f12
support for string arrays
...
allows to add phase label from mapping. Only scalar string arrays are
allowed (no real restriction)
2021-04-24 22:50:59 +02:00
6e1fe712c7
Merge branch 'python-documentation' into drop-old-DADF5-support
2021-04-24 19:39:28 +02:00
690b478013
[skip ci] language polishing
2021-04-24 13:12:44 -04:00
24046ef683
support the user
2021-04-24 18:00:57 +02:00
95831e53f6
using improved documentation
2021-04-24 16:23:34 +02:00
3977e230b3
documenting and ensuring consistent argument names
...
'name' for a dataset matches the analogy to a file name
2021-04-24 14:47:45 +02:00
4d67c85a33
clarify out-of-place behavior and document return values
2021-04-23 23:32:09 +02:00
26f37d822d
state return value
...
not for Rotation as its docstring is extended by Orientation
2021-04-23 19:15:11 +02:00
6699f2ee5f
don't use shell variables
...
Marc solver can be controlled in python, installation can be tuned with
CLI arguments
2021-04-22 12:02:53 +02:00
3f8bd645d8
handle the case that MSC-related variables are not set
2021-04-22 07:55:41 +02:00
190ddafa44
don't support old file formats
2021-04-14 23:23:32 +02:00
0e6cb127df
damage can be defined in parts of the domain ...
2021-04-14 19:24:45 +02:00
1be1a72a09
Merge branch 'Fortran-cleaning' into 'development'
...
Clarifying structure
See merge request damask/DAMASK!368
2021-04-13 11:08:18 +00:00
cfbb2d416f
better example
2021-04-10 23:58:53 +02:00
1133090b6c
logfile does not contain much valuable information
...
Marc automatically creates .out
2021-04-10 23:50:20 +02:00
37df78a8e0
don't show progress bar for empty iterations
2021-04-10 15:01:50 +02:00
d304654972
allow easy detection of empty view/get/place
2021-04-10 09:33:45 +02:00
07d573a56d
more helpful dataset descriptors
...
phase label for single phase material not helpful
2021-04-10 09:32:21 +02:00
44331c504b
__class__ is unknown (says prospector)
2021-04-10 08:29:42 +02:00
63b343ad87
Merge branch 'development' into allclose-rotation-orientation
2021-04-10 08:05:25 +02:00
e89236b14d
bugfix:
...
don't overwrite data when doing a 'place-like' operation to merge
datasets
2021-04-08 17:36:33 +02:00
2d8658822d
report return value
2021-04-08 14:58:22 +02:00
00aed99419
naming of tests should follow naming in class
2021-04-08 13:39:48 +02:00
bc1454970c
mandatory symmetry
...
if symmetry is not of interest, damask.Rotation should be used
2021-04-06 22:49:08 +02:00
bf2515c4c1
removed `Grid.diff` in lieu of `__eq__`
2021-04-06 12:10:35 -04:00
bf4c88a39e
renamed result.read to get; polishing
2021-04-06 11:39:44 -04:00
02277fb820
consistently return masked array
2021-04-05 22:18:18 +02:00
d5806075d4
distinguish isclose/allclose and __eq__
2021-04-05 22:15:03 +02:00
115e3dd4c7
simplified
2021-04-05 17:18:12 +02:00
faa9e6aa6a
open file only once
2021-04-05 15:58:10 +02:00
c3a7a85f7a
avoid repetition
2021-04-05 15:41:28 +02:00
9db1ef9ed7
polishing
2021-04-05 13:41:49 +02:00
65b03aeb2d
Merge remote-tracking branch 'origin/development' into Results.read-.place
2021-04-05 10:22:49 +02:00
62c85db745
out of place behavior
2021-04-05 08:03:00 +02:00
fc409fcf08
'join' is always linear in time, '+' not
2021-04-04 22:12:28 +02:00
1d6b56346a
use 'view' and standardized calling signature
2021-04-04 20:56:30 +02:00
0e5f693fea
untangling
2021-04-04 19:44:06 +02:00
e1d57f176d
simplifying
...
[] has a special meaning for glob, use () to indicate direction for IPF
color. It is anyways the sample direction, not a crystallographic
direction
2021-04-04 19:05:58 +02:00
d78e0085fc
simplified
2021-04-04 18:32:17 +02:00
a962777d24
avoid code duplication
2021-04-04 13:38:40 +02:00
6fef46539e
standard names
2021-04-04 13:16:14 +02:00
6f3dc80079
simplified/using new functionality
2021-04-03 16:32:48 +02:00
27f2e3b26e
avoid random order when using sets
2021-04-03 12:21:06 +02:00
885aeb62e5
geometry0 itself is useful
...
can be combined with 'place' if in-memory VTK is required for spatial
operations
2021-04-03 08:58:22 +02:00
39c0bc9de6
polishing
2021-04-03 08:19:16 +02:00
1b2d892b42
keep reference folder clean
2021-04-03 07:31:31 +02:00
20d0242d59
using new logic
2021-04-02 12:21:27 +02:00
e8ff509502
output all datasets per default
...
respect 'field' selection
2021-04-02 11:29:58 +02:00
18afa217fe
easier to understand
...
limit to same fields for homogenization and fields results in a little
less flexibility (requires two views) but should be acceptable for such
a little used feature
2021-04-02 08:24:49 +02:00
cf1ce6a1fe
support for masked array
...
masked arrays are the outcome of Result.place
2021-04-02 08:07:22 +02:00
58ac99831c
polishing
2021-04-02 07:47:03 +02:00
9459fea929
support for pandas not planned any more
...
damask.Table supports multidimensional data, numpy.ma supports masked
arrays
2021-04-02 07:42:54 +02:00
f6d6aefe1d
function renaming; rewording of help messages
2021-04-01 18:41:28 -04:00
84e117c6b3
polished and added tests
2021-04-01 17:26:51 +02:00
71d1a341e4
simplified
2021-04-01 15:08:48 +02:00
4b9fcf2f77
testing new read functionality
2021-04-01 14:55:50 +02:00
85aaaa96f3
new tests
2021-04-01 10:47:45 +02:00
2397df88f9
documenting
2021-04-01 07:21:34 +02:00
c1f7ea750b
legacy access not needed anymore
2021-04-01 06:55:47 +02:00
8a3af87e3e
Merge remote-tracking branch 'origin/development' into spring-cleaning
2021-04-01 00:09:51 +02:00
07c9cf5f1a
- improved reporting and slicing of table.
...
- implemented numpy-like `allclose` and `isclose`
2021-03-31 18:30:07 +00:00
8a8a28adc4
support multi-constituents
2021-03-31 20:02:25 +02:00
be444b69ca
include homogenization
2021-03-31 15:44:27 +02:00
97e6c397d9
cleaned
2021-03-31 15:10:39 +02:00
7b678af1b4
float and int are different
2021-03-31 12:40:53 +02:00
8c7ee5e796
simplified
2021-03-31 12:05:51 +02:00
e9c65dee73
documenting and testing
2021-03-31 10:59:21 +02:00
7b846efe4a
arguments can be int, bool, str
2021-03-31 08:12:57 +02:00
eebb050a64
simplified
...
place seems to work
2021-03-31 07:56:42 +02:00
60119c1300
return minimal unique dictionaries per default
2021-03-30 21:39:14 +02:00
989992004d
cleaning dicts
2021-03-30 19:41:36 +02:00
7865092b82
not needed
2021-03-30 17:24:19 +02:00
b9b66fac45
simplified
2021-03-30 17:15:02 +02:00
d1af4b031a
source for python-compatible versioning
2021-03-30 17:02:57 +02:00
b19ec4f8ae
first ideas for more user friendly usage
2021-03-30 07:24:47 +02:00
3fe1accf18
not used anymore
2021-03-28 19:48:44 +02:00
5ea2fa97a0
untested and unused code
2021-03-28 12:46:26 +02:00
a587e70704
split into small sections and test damage
2021-03-28 12:08:08 +02:00
a3ab890315
bugfix for ConfigMaterial
...
don't use mutable variables in python initializers, they get updated
2021-03-28 11:35:40 +02:00
480b8315a7
cleaning + testing
2021-03-27 15:54:29 +01:00
8a99306aed
old table not needed anymore
2021-03-27 14:34:18 +01:00
c742f7c9d0
need to cope with _asciitable.py and _test.py
2021-03-27 12:47:58 +01:00
be9e00347b
cleaning
...
dropped support for legacy table
2021-03-27 10:11:31 +01:00
111a1a76c6
cleaning
2021-03-27 07:35:49 +01:00
9fd244d8a0
cleaning
2021-03-26 20:59:49 +01:00
3e8bcd3225
cleaning examples, using consistent names
...
- examples in repository should only show the most basic steps
- MSC.Marc, marc => Marc
2021-03-26 09:27:49 +01:00
9e9eb391ba
handle floating point errors
2021-03-25 22:33:14 +01:00
a72e2db678
Merge branch 'development' into output-rename
2021-03-25 21:03:20 +01:00
3d4590a522
Merge branch 'citation-style' into development
2021-03-25 14:39:44 -04:00
0e57135239
[skip ci] dx.doi.org --> doi.org
2021-03-25 14:33:08 -04:00
3b392281e4
consistent naming in HDF5 output
2021-03-25 19:22:59 +01:00
fe0cd8e5e2
transparently handle orientations/rotations
2021-03-25 15:30:31 +01:00
1ff6a09746
tests/specifications
2021-03-23 18:51:21 +01:00
572c3204d0
let the computer do the work
2021-03-23 14:28:56 +01:00
e0e088eaa8
EBSD dataset for testing
...
use only non-segmented data. Automatically fall back to numeric phase
names if cell_ensemble_data is not found
2021-03-23 13:42:04 +01:00
549b849730
better readable
2021-03-23 12:05:08 +01:00
926b5c657d
material_add can do expansion
2021-03-23 12:01:35 +01:00
005fde2504
homogenization in material was missing
2021-03-23 11:48:35 +01:00
7012099d0c
substituted broken link
2021-03-20 14:34:14 +01:00
1c3d1ee0f2
documented
2021-03-20 13:37:06 +01:00
394fda5f37
improving import from DREAM.3D
...
- no duplicated entries even for non-segmented data
- using phase labels from file
- material.yaml: Dummy homogenization and phase
- tests to ensure correct order and match between Grid and
ConfigMaterial
2021-03-20 12:56:18 +01:00
cdcedd0d44
autodetect base group
2021-03-20 07:26:07 +01:00
35c5bfcc45
reference files for DREAM.3D operations
...
will be used for the configuration of material.yaml and grid (using
symbolic links)
2021-03-19 11:45:04 +01:00
fc172921fb
unified citation style continued
2021-03-19 10:41:47 +01:00
07d79ef4ba
unifying style
2021-03-17 11:25:21 +01:00
ec28fd8a73
polishing
2021-03-12 09:23:05 +01:00
3b27c64709
Merge remote-tracking branch 'origin/development' into config_from_dream3D
2021-03-12 08:11:54 +01:00
e2d4ab427e
explicit path joining with "/" in _result; updated cpTi CRSS
2021-03-09 22:02:49 -05:00
a26e586b14
More general 'delete' (accepts iterables) and backports of '|' and '|=' for union/add.
...
'|=' would work for python 3.9 without extra code, but '|' unfortunately casts 'damask.Config' (subclass of 'dict') to a 'dict'.
2021-03-09 19:15:15 +00:00
4208c4e713
adapted to Table.add being out-of-place
2021-03-08 11:04:49 -05:00
7cbc69a4ca
added "Returns" to help
2021-03-08 11:02:27 -05:00
109ad378c2
corrected help text of as_Rodrigues_vector
2021-03-02 16:26:18 +01:00
7b89cb41f9
Merge branch 'dislotwin-correction' into 'development'
...
dislotwin-correction
See merge request damask/DAMASK!347
2021-02-28 19:45:34 +00:00
464c62e7e7
abandoned integer aliases for projection directions
2021-02-28 12:47:13 +01:00
175d724ded
added keepdims=False option to project_stereographic
2021-02-27 18:38:40 -05:00
ea763fd941
generalized stereographic projection to cope with all three directions (x,y,Z)
2021-02-27 11:15:01 -05:00
bf223e8e00
helpful reporting in case of errors
2021-02-26 06:35:42 +01:00
1d62341811
Fixed missing second-to-last entry in representation list. Polished help texts.
2021-02-26 03:20:28 +01:00
c0e488881e
converted two examples to yaml
2021-02-24 20:13:55 +01:00
2549d7a05a
[skip ci] removed debug print statement
2021-02-24 15:50:06 +01:00
2dea705fa9
polishing/shortening
2021-02-23 19:01:10 -05:00
0b08b3d233
expanded help texts
2021-02-23 18:54:55 -05:00
dcc42204ec
expanded help on material_add
2021-02-23 18:40:32 -05:00
69316f186b
fixed ConfigMaterial.from_table; 2D grid.from_table now acceptable
2021-02-23 11:50:13 -05:00
4a00254dba
shortened material_add and allow for multi-constituent; broken from_table...
2021-02-22 22:47:08 -05:00
0461c404f7
numpy uses __array__ for casting
...
avoids infinite loop of __init__, __getitem__, and shape. Found on
8cf07f6113
2021-02-22 18:52:06 +01:00
5517be5078
warn the caller of deprecated functions
2021-02-22 08:49:44 +01:00
67f0ab2ce8
silence deprecation warning
2021-02-22 08:46:28 +01:00
b00b4bb0ad
more general handling of precision
...
Anaconda on windows does not have np.float128 defined, but aliases
should work
https://numpy.org/devdocs/user/basics.types.html
2021-02-19 17:03:41 +01:00
f5f993435b
make intention clear
2021-02-19 16:34:28 +01:00
ab9661d951
don't see how ':=' should help here
2021-02-19 07:04:34 +01:00
7c6ce525a3
ask for minimum version
2021-02-19 06:51:32 +01:00
f609b61157
Merge branch 'development' into account-for-floating-point-precision-in-orientation
2021-02-15 16:26:25 -05:00
6bbd55d967
exchanged c for x in from_cubochoric
2021-02-15 16:25:36 -05:00
002cfbd085
Merge branch 'account-for-floating-point-precision-in-orientation' into 'development'
...
ensures that at least one orientation in the FZ is found
See merge request damask/DAMASK!337
2021-02-15 20:53:37 +00:00
89e8ca4535
renamed and shortened _separate_arguments()
2021-02-15 11:22:42 -05:00
099cd90890
Merge remote-tracking branch 'origin/development' into python-improvements
2021-02-13 16:51:29 +01:00
fe63adcca4
mimic python error message and ensure that error is raised
2021-02-12 18:20:39 +01:00
9e8a243d6f
avoid name conflict with lattice parameter 'c'
2021-02-12 12:15:08 +01:00
f1b8978e21
accept variables that will be used
...
**kwargs allowed the use of extraneous arguments
2021-02-12 11:24:12 +01:00
958936c449
Merge branch 'development' into polishing-for-release
2021-02-11 21:59:59 +01:00
e8fae6b2a7
simplified
2021-02-11 21:56:53 +01:00
4e31862f0f
avoid repetition
2021-02-10 18:35:13 +01:00
6895ef6b18
always write LF line endings
...
small pitfall: I windows users use a filehandle that results from a call
to open() without the newline option, they get still CRLF line endings
2021-02-10 10:03:35 +01:00
4bcbcb34d0
ensures that at least one orientation in the FZ is found
2021-02-09 23:58:00 +01:00
869307c5ec
temperature not needed for pure mechanics
...
would also require to define thermal homogenization
2021-02-08 22:56:37 +01:00
cab5a5cec7
homogenization 'none' name misleading.
2021-02-04 15:37:40 +01:00
14ce127dc4
fraction --> v
2021-02-04 13:46:01 +01:00
051e3ed0ae
not needed anymore
2021-02-02 12:26:08 +01:00
0f6094890a
simplified
...
damask.environment does not offer any advantage over os.environ for
variables. After 'root_dir' was removed, the whole module became
obsolete
2021-01-15 12:14:05 +01:00
37de561938
shell variables are more robust
...
they will also work if Fortran and python code are installed in
different locations.
2021-01-13 18:53:16 +01:00
d76543f759
better name
2021-01-13 14:57:58 +01:00
a7d998dd48
standard name
2021-01-13 14:53:50 +01:00
4c35da8627
simplified
2021-01-13 11:33:28 +01:00
196902948f
simplified
2021-01-13 09:54:04 +01:00
f4247e0f35
simpler (and scipy compatible)
2021-01-13 09:35:42 +01:00
2d6e6a2370
Rotation composition uses "*"; application of Rotation to object uses "@"; "apply()" works on both
2021-01-12 18:57:33 -05:00
c3c4b05c01
handling point based data enabled
2021-01-12 13:01:11 +01:00
6bffb91951
Added example
2021-01-11 15:16:46 +01:00
6c367ec010
conform to docstring conventions
2021-01-11 15:05:48 +01:00
2951617e28
able to take phaseID into account
2021-01-11 15:02:15 +01:00
dbab3c3a83
dream3D has an extra row at start for grain based data
2021-01-11 14:21:56 +01:00
028d47034d
conversion from dream3D for single phase materials
2021-01-11 13:31:08 +01:00
f0351e403a
removed duplicate test
2021-01-07 11:01:15 -05:00
bde66d85fc
Merge branch 'development' into python-improvements
2021-01-07 10:58:33 -05:00
94cfe28128
polishing help; Rotation.apply(Rotation) now acceptable.
2021-01-06 18:03:10 -05:00
acbb564afc
restored functionalitity for adding list.
...
got accidently lost
2021-01-04 07:23:14 +01:00
d8b4b7e0f5
!= and == work componentwise
2021-01-03 21:52:19 +01:00
f48a446353
compatible with scipy.spatial.transform.Rotation
...
also introduced inplace variants and '/' as multiplicative inverse of
'*'
2021-01-03 16:08:22 +01:00
98723cb0ed
need to handle special case of Re() = 0
...
ensuring that the real part is positive seems to be a good idea on first
sight, but it would be easier to simply acknowledge that qu = -qu
2021-01-03 15:50:15 +01:00
80b8693a66
avoid adding to existing data, i.e. when reading a file
2021-01-03 12:10:39 +01:00
5f1399acc3
consistent behavior with other classes
...
python dictionary operates in-place, so wrappers for out-of-place
behavior let it use like the other DAMASK classes
2021-01-03 12:09:21 +01:00
9a278daa3f
copy not needed
...
YAML writer does not write out references anymore
2021-01-03 12:07:02 +01:00
35ca1ffb0a
consistent copy functionality
2021-01-03 12:03:40 +01:00
6fe1ff8e39
fixed test for rodrigues parametrization
...
for angle close to 180deg, the sign of the axis does not matter
2021-01-03 11:50:45 +01:00
da62daf15d
added test for appending rotation lists; better check for type==list
2020-12-28 12:26:09 -05:00
4796afdd92
fix for broken representation of no-rotation orientations and averaging weights
2020-12-28 12:10:21 -05:00
d8b57680ec
raise NotImplemented when using R*b instead of R@b
2020-12-21 15:47:18 -05:00
6cc78cb41e
Merge branch 'misc-improvements' into 'development'
...
Misc improvements
See merge request damask/DAMASK!302
2020-12-18 15:19:04 +01:00
35f9861818
Fortran standard is 2018
...
will not work for older compilers
2020-12-18 15:19:04 +01:00
5fb0e4908b
Examples reflect actual behavior
2020-12-18 07:09:05 +01:00
403ac693da
need to pass init argument to dict superclass
2020-12-17 18:08:55 -05:00
e11be7e600
preinitialize a ConfigMaterial object with 'constituents','homogenization','phase' keys
2020-12-17 10:49:33 -05:00
2dd520b4a2
P_aim should be independent from P_av
...
P_av is not defined after restart or cutback. Restart with change of
load case is probably still an issue
2020-12-15 08:06:50 +01:00
aad123f41b
Merge branch 'table-getitem' into development
2020-12-12 19:58:42 +01:00
36e4042f0b
removed "where" method from Table class
2020-12-11 19:31:19 -05:00
2e28bc127a
better message in case that GUI is not possible
2020-12-10 23:44:54 +01:00
a881e6e57a
Merge remote-tracking branch 'origin/development' into misc-improvements
2020-12-10 23:41:59 +01:00
32c2de6b91
Ensuring regular spacing for grid
2020-12-10 22:47:30 +01:00
4286fc3b82
Merge branch 'development' into misc-improvements
2020-12-10 20:21:00 +01:00
9b6f5ba9c6
Merge branch 'development' into compressed-hdf5
2020-12-10 00:23:22 +01:00
de1708b20a
missing renames + better help
2020-12-08 00:36:41 +01:00
78192ef3fd
clearer naming + better comments, thanks to @p.eisenlohr
2020-12-07 17:49:37 +01:00
429b84004d
more filters
...
- shuffle: significanlty better compression
- Fletcher32: checksum to detect errors
computational overhead is very small
2020-12-06 19:57:00 +01:00
52e3fb50bc
compress.
...
Datasets are chunked along first timension. Chunk size (1MB for real) is
probably not optimal
2020-12-06 11:44:52 +01:00
000de75617
write orientation as plain array, not derived type
2020-12-06 08:36:16 +01:00
c80e1c5420
less confusing in the standard case, more helpful in the special case
2020-12-05 10:47:42 +01:00
ed286ee09f
Merge branch 'rename-grid-2' into misc-improvements
2020-12-05 09:50:46 +01:00
171d642dbd
rename: Geom -> Grid
2020-12-04 07:50:47 +01:00
0fdefa5e78
renames:
...
after the rename of "grid" to "cell", the name cell should not be used
for the coordinates of the cell centers. In agreement with the names
x_p/u_p for point positions/displacements, now the "point" is used to
refer to the materialpoints (i.e. cell centers)
Additionally, "_node"/"_point" are now suffixes to
"coordinates"/"displacements".
Finally, "coords" is renamed to "coordinates"
2020-12-03 23:59:37 +01:00
ac0a20696c
rename: grid -> cells
2020-12-03 22:16:34 +01:00
ccf1a849fa
Merge branch 'ShowGrainBoundaries' into 'development'
...
Show grain boundaries
See merge request damask/DAMASK!297
2020-12-03 17:13:15 +01:00
4877334986
added getitem and where functionality to Table
2020-12-02 19:25:54 -05:00
97df1ab9b3
reinstated write functionality
2020-12-02 13:04:56 -05:00
d3a5979d25
meaningful result
2020-12-02 14:45:47 +01:00
c880052250
avoid evil eval
2020-12-02 14:37:44 +01:00
aa8f30d746
Merge branch 'development' into ShowGrainBoundaries
2020-12-02 12:50:04 +01:00
1c2cdbd5a1
support of all standard numpy types
...
+ tests
2020-11-30 12:33:21 +01:00
813ef927c4
consistent with "save_XDMF" (capitalized)
2020-11-30 09:28:46 +01:00
4d2bf37193
Merge branch 'lattice-structure-rename' into ShowGrainBoundaries
2020-11-29 20:53:58 +01:00
1d05edd7b3
fixes:
...
- need to get crystal structure as attribute in test (generic function
was removed, because the crystal structure is in general not the same
over the whole domain)
- consistent sorting of attributes
2020-11-29 09:06:47 +01:00
f48f5cb0e8
bugfix/better readable
2020-11-29 08:58:48 +01:00
c712332e87
using consistent names for Bravais lattice in Fortran and Python
2020-11-28 22:38:12 +01:00
a8da1e5ed9
Paraview 5.9 supports datasets of arbitrary length in XDMF
2020-11-27 22:57:15 +01:00
3c1f1af009
more then one direction in file
2020-11-27 20:16:06 +01:00
c2be41b9f6
remove import vtk because unused
2020-11-25 12:53:29 +01:00
31df4c04c8
added test
2020-11-25 12:51:52 +01:00
eb085958f8
polishing
2020-11-25 11:32:07 +01:00
cd58278a01
returns vtk object
2020-11-25 10:39:58 +01:00
7abc32b09c
alternative for if d_s== , not sure it improves the previous
2020-11-24 19:59:46 +01:00
c8b1f8d9f1
shortest possible way i found to include directions in an elegant way
2020-11-24 17:49:58 +01:00
030062d293
Merge branch 'unit-in-vtk' into 'development'
...
Unit in vtk
See merge request damask/DAMASK!288
2020-11-24 16:21:01 +01:00
7fa98ef084
DEcode bytes into str
2020-11-23 20:17:04 +01:00
5ab2847b36
polishing
2020-11-23 20:06:34 +01:00
cbe8160e13
Merge remote-tracking branch 'origin/development' into vector-mechanics
2020-11-23 19:55:34 +01:00
f85dba2835
small polishing
2020-11-23 19:43:19 +01:00
287d44c5df
Merge remote-tracking branch 'origin/development' into unit-in-vtk
2020-11-23 19:19:02 +01:00
7356330cf6
Merge remote-tracking branch 'origin/new_names_result' into development
2020-11-23 11:49:15 +01:00
c58f9f23a1
read old version while resolving merge conflicts
2020-11-22 14:32:32 +01:00
24fabdec22
Merge branch 'development' into vector-mechanics
2020-11-22 12:02:29 +01:00
2de3a6a205
fits better to stretch_left/right
2020-11-19 22:46:52 +01:00
a87596cefc
return rotation type (ensures proper rotation)
2020-11-19 22:36:19 +01:00
662a033d91
adapted to VTR geom files
2020-11-19 14:26:15 -05:00
a82b1adc14
Merge branch 'geom-load-ASCII-autoshift' of magit1.mpie.de:damask/DAMASK into geom-load-ASCII-autoshift
2020-11-19 12:24:09 -05:00
a4b5c2a537
shorter (but still self-explanatory) name
2020-11-19 15:20:44 +01:00
6e5cb60132
general tensor functionality
2020-11-19 15:16:01 +01:00
894a8de9f9
avoid name clash: as_Rodrigues_vector(vector = ...)
2020-11-19 14:31:14 +01:00
1c07152b96
sorted alphabetically
2020-11-19 14:05:59 +01:00
20d0732b2e
output unit to XDMF/vtk
2020-11-19 13:45:40 +01:00
af3a87b197
adjust to new auto-convert of 1-based geom files
2020-11-19 11:34:55 +01:00
5a5dd24687
removed aliases
2020-11-19 10:50:14 +01:00
903c185ee6
distinguish 'file not found' and 'invalid file'
2020-11-19 10:39:41 +01:00
c74e57f225
vtk error handling is not very helpful
2020-11-19 09:59:39 +01:00
96826dca73
Geom.load_ASCII now auto-shifts material indices
2020-11-19 09:40:19 +01:00
cb22c34db2
Geom.load_ASCII now auto-shifts material indices
2020-11-18 18:25:25 -05:00
b9b26cb2cc
output results for all constituents
2020-11-18 23:36:02 +01:00
5359e05fd3
always merge homogenization results
2020-11-18 23:17:12 +01:00
b885e38b3f
better readable
2020-11-18 22:12:23 +01:00
4bf802a28e
fixed documentation
2020-11-18 21:51:37 +01:00
843d7d8cac
Merge remote-tracking branch 'origin/development' into new_names_result
2020-11-18 21:37:52 +01:00
7352431143
vectorized
2020-11-18 20:10:04 +01:00
564ee6c96a
make uvw/hkl keyword-only arguments
...
avoid to prefer one over the other, since they are mutually exclusive
2020-11-18 16:45:53 +01:00
c60d9cde2a
merge 'mechanics' datasets
...
was like that for 'generic'. Needs detailed discussion in future
2020-11-18 15:52:55 +01:00
838a4ea592
[skip ci] fix for scalar values
2020-11-18 14:57:32 +01:00
870c0f7aca
removed aliases
...
required bump of DADF5 version
2020-11-18 14:53:11 +01:00
1c9028d0b1
simplified
2020-11-18 14:01:52 +01:00
89c748fdf1
Merge remote-tracking branch 'origin/development' into vector-mechanics
2020-11-18 13:55:05 +01:00
9a1e8e3c38
for the transition period
2020-11-18 13:28:53 +01:00
7291b95055
avoid pyflake for blank line 6 final
2020-11-18 12:29:10 +01:00
ee5822b721
avoid pyflake for blank line 5
2020-11-18 12:25:08 +01:00
4dbfad74cb
avoid pyflake for blank line 4
2020-11-18 12:24:17 +01:00
eda3837874
avoid pyflake for blank line 3
2020-11-18 12:21:09 +01:00
c681101136
avoid pyflake for blank line 2
2020-11-18 12:19:47 +01:00
33aa888fc7
avoid pyflake for blank line
2020-11-18 12:17:05 +01:00
e8f82d52cc
fix bug
2020-11-18 12:16:08 +01:00
be206d28b3
vectorized and more options
2020-11-18 12:14:12 +01:00
6bedd84759
self-explanatory names
2020-11-18 08:15:04 +01:00
cd8434b991
Merge remote-tracking branch 'origin/development' into python-improvements
2020-11-16 22:57:49 +01:00
c16ad845bc
Merge branch 'modernize-testing' into 'development'
...
Modernize testing
See merge request damask/DAMASK!280
2020-11-16 20:10:38 +01:00
a8fec922d5
show name in title
2020-11-16 17:25:13 +01:00
5a53f8743b
added to docstring
2020-11-16 10:44:33 -05:00
fa25a13264
fixed typo
2020-11-16 10:34:49 -05:00
de20e6b35d
code shortening; list_predefined() --> property "predefined"
2020-11-16 10:23:26 -05:00
5ebde607a2
einsum simplifications
2020-11-16 07:43:20 +01:00
9b9d83d93c
adding '_tensor' not needed
2020-11-16 01:15:39 +01:00
b893967b68
more systematic names and extended docstrings
2020-11-16 01:02:36 +01:00
6f81f5278d
separating general tensor math from mechanics operations
2020-11-16 00:13:34 +01:00
b3955573f6
using new tests
2020-11-15 22:39:47 +01:00
fd8743af5e
clearly distinguish seeds for tessellation and seeds for RNG
2020-11-15 13:49:17 +01:00
1541ac0add
more intuitive use
2020-11-15 12:38:54 +01:00
01d84c1477
testing also functions with graphical output
2020-11-15 11:49:52 +01:00
15af12bbb4
__ne__ is automatically set to !__eq__, __neq__ has no special meaning
2020-11-15 11:38:26 +01:00
51e5dda702
documentation + consistent string formatting
2020-11-15 10:54:20 +01:00
05c1007add
documentation improvments + acceptance of lists
...
example code at respective function, no space in 'or' variable names
(sphinx cannot handle this)
2020-11-15 10:31:01 +01:00
1eb9d494c7
not specific to Orientation class
2020-11-14 19:51:15 +01:00
149fce0a7e
increase test coverage
2020-11-14 19:42:52 +01:00
764aacf2a1
increasing test coverage
2020-11-14 17:54:47 +01:00
9eb4e2d0de
corrected handling of scalar/array arguments
...
+ more tests
+ corrected handling of numpy types
2020-11-14 17:26:38 +01:00
6529613726
Merge remote-tracking branch 'origin/development' into vector-mechanics
2020-11-14 15:10:52 +01:00
bacfe9f462
Merge branch 'fix-add_primitive-rotation' into 'development'
...
Avoids coordinate normalization _before_ rotation
See merge request damask/DAMASK!276
2020-11-13 14:11:54 +01:00
7b7b449877
testing fixed behavior
2020-11-13 06:50:57 +01:00
b3e8b85d25
normalizing coordinates _before_ rotation causes wrong primitive shape for non-cubic VEs
2020-11-12 18:34:29 -05:00
e15678e7a4
consistent handling of comments
2020-11-12 21:31:09 +01:00
8429a9d695
Merge remote-tracking branch 'origin/development' into modularize-mech
2020-11-11 07:04:23 +01:00
e90c20ccd6
Merge remote-tracking branch 'origin/geom-attributes-as-checked-properties' into development
2020-11-10 14:54:40 +01:00
5926f84851
WIP: refactoring Orientation=Symmetry+Rotation, Lattice=subclass of Sym, and Crystal=Lattice+Rotation
2020-11-09 21:20:56 +01:00
f105631015
redefined attributes material,size,origin,comments as properties; enhanced help/descriptions
2020-11-08 12:11:30 -05:00
287d56fc3d
consistent with new output names
2020-11-08 16:01:11 +01:00
7d4163e8a9
new format of material.yaml
2020-11-08 15:57:06 +01:00
03a68248b5
polishing
2020-11-06 13:25:00 +01:00
bbaeeb02da
Merge remote-tracking branch 'origin/misc-improvements' into h5py3
2020-11-06 13:19:47 +01:00
58a5d2666c
ensure correct Mises mode
2020-11-06 00:10:46 +01:00
4ccd068d3b
catch error in case of exisiting dataset
2020-11-05 23:00:56 +01:00
e649fb195f
update to use variable-length strings
2020-11-05 22:34:41 +01:00
30938a8278
correct order (brackets)
2020-11-05 21:38:00 +01:00
e26bb962c8
encode from str to bytes
2020-11-05 21:19:49 +01:00
68d384bbdd
bugfix: missing rename
2020-11-05 21:14:02 +01:00
a416f5ed5b
encode/decode for h5py3 not needed anymore
...
attribute values with variable-length strings will be interpreted as
str, not bytes
2020-11-05 16:13:29 +01:00
708c83dcf1
polishing
2020-11-05 07:15:59 +01:00
1fcf9cb721
don't compute silently the wrong von Mises kind
...
and allow the user to set it explicitly
2020-11-05 05:48:12 +01:00
7341b9830a
h5py v 3.x handles strings differently
2020-11-05 05:39:45 +01:00
01af348cd9
symmetric behavior load/save
...
default name reflects fact that material.yaml has a fixed name
2020-11-04 21:14:08 +01:00
ae959b9cc2
allow '.' in filenames
2020-11-04 18:08:04 +01:00
eaceb16203
added +1 to nanmax(material) as auto offset, now consistent with help and intention...
2020-11-03 17:43:57 -05:00
11f1f4f555
Merge branch 'modernize-testing' into development
2020-11-03 12:49:19 +01:00
2867050397
corrected shortened test logic
2020-11-02 18:31:37 -05:00
4fa44d388d
shortened test for monotonous increase of material index after sorting
2020-11-02 18:21:51 -05:00
4d4278e6dd
shortened tainted_neighborhood logic
2020-11-02 18:20:52 -05:00
cf958d32b4
Merge branch 'development' into vector-mechanics
2020-11-02 15:23:11 +01:00
be47c744d8
Merge branch 'development' into geom-sort
2020-11-02 12:26:31 +01:00
212ed62b19
pytest-based tests
...
removed unused functionality from deprecated python library modules
2020-11-02 12:07:16 +01:00
086b215d94
Merge branch 'test-new-dir' into development
2020-11-01 19:29:52 +01:00
cf18954db9
hint for future improvement
2020-11-01 19:20:52 +01:00
7059e6af6e
might not be in the last line
2020-11-01 18:34:52 +01:00
946da2379b
Merge remote-tracking branch 'origin/development' into modernize-testing
2020-11-01 10:06:52 +01:00
0a3598c338
Merge branch 'simplify-from_table' into development
2020-10-31 22:34:17 +01:00
0ebb9b611d
functionality to sort material id
...
convenient for layered materials
2020-10-31 20:46:21 +01:00
67f69fc8a5
data is consecutive
2020-10-31 17:23:58 +01:00
8224122bb9
more user friendly error handling
2020-10-31 13:16:25 +01:00
cf740a279e
combine constant with varying data
2020-10-31 09:56:43 +01:00
aecf2f539e
allow one homogenization
...
quite useless ...
2020-10-30 22:26:02 +01:00
c29e3650f3
don't squeeze into scalar
2020-10-30 22:24:27 +01:00
392803e47d
Merge remote-tracking branch 'origin/Marc_version_names' into development
2020-10-30 17:49:18 +01:00
46e5023f8b
Merge branch 'geom-improvements' into 'development'
...
Geom improvements
See merge request damask/DAMASK!264
2020-10-29 23:53:33 +01:00
b2289e80b2
simplified
2020-10-29 20:09:13 +01:00
0e499eedf3
correct rounding/clearer logic
2020-10-29 18:35:22 +01:00
4b700d367e
improved test
2020-10-29 17:59:44 +01:00
904c338b13
Reflect version underscore of installation files
2020-10-29 15:21:40 +01:00
999cf53c07
tests+fixes
2020-10-29 07:42:41 +01:00
3be0c462a8
explicit is better then implicit:
...
user should sort Table according to coordinates to create geometry. This
allows to have consistent behavior for from_table in Geom and
ConfigMaterial. We always ensure to keep the order
2020-10-29 07:25:16 +01:00
1b2cd6caf6
documentation was misleading
2020-10-28 21:53:46 +01:00
4ff99a7af4
more logical layout
2020-10-28 21:51:20 +01:00
855bf124d3
faster
...
https://stackoverflow.com/questions/16992713
2020-10-28 16:53:16 +01:00
21f095c9d8
Merge branch 'flexible-yaml-dump' into development
2020-10-28 16:19:17 +01:00
98e0ef3881
no loops
...
taken from https://stackoverflow.com/questions/3403973
2020-10-28 13:38:20 +01:00
d72343c865
keep order of unique values found in table
2020-10-28 11:56:28 +01:00
b38a498197
fast
2020-10-28 09:43:20 +01:00
5f03e8cf8f
0-based material indices
2020-10-28 09:31:55 +01:00
a5a127b787
new tests+ updated results
2020-10-27 16:46:08 +01:00
0804e6ee74
pythonic names
2020-10-27 13:50:47 +01:00
fa67a2ddf8
cell_coordinates is now a property
2020-10-27 13:35:14 +01:00
201a62d7c9
easier visualization if verts have a point-cell
2020-10-27 13:19:53 +01:00
4dd387d7f5
compatibility with old pyyaml + test for numpy
2020-10-27 06:39:58 +01:00
4159ae5f3d
keep order of keys
2020-10-26 21:44:38 +01:00
5834d95012
support for more types
...
- allow to directly use Config and its sublasses (cast to dict)
- convert numpy arrays
2020-10-26 21:38:24 +01:00
802e09be4f
python/damask/_geom.py exceeds line length limit (maximum line length 143 > 132)
2020-10-26 15:11:06 +01:00
2715e7b1a7
a bit more vectorized
2020-10-26 15:09:32 +01:00
1cbfa866d2
get rid of scalar variables
2020-10-23 16:23:36 +02:00
bd67296e8d
MARC_VERSION as MSCVERSION
2020-10-22 11:50:13 +02:00
7fa31a8a1b
solving imported but unused pyflake
2020-10-19 12:55:35 +02:00
4c22efc6ce
added show GB
2020-10-19 12:52:10 +02:00
bac7ace413
Merge remote-tracking branch 'origin/general-N_constituents' into vtr-only
2020-10-13 17:39:19 +02:00
86d91baf90
0-offset for geom
2020-10-10 10:36:15 +02:00
ffabeacbcb
removing functionality related to deprecated 'geom' format
2020-10-10 09:41:11 +02:00
00e2128e03
don't test ASCII functionality
...
vtr writing in Geom class is alwas serial, no need to wait
2020-10-10 09:02:25 +02:00
06d11a72da
better fitting name
...
load implies a more direct takeover.
2020-10-09 19:19:05 +02:00
57180952ec
typo
2020-10-09 19:05:05 +02:00
347c88cbb6
documented
2020-10-09 14:24:29 +02:00
75401dd280
generate configuration from table
2020-10-09 07:45:20 +02:00
0c68d293b6
N_constituents is now a general homog property
2020-10-09 07:44:05 +02:00
6ecaaa31c9
fairly general function to generate material configuration
2020-10-08 22:07:26 +02:00
952ad4f8fe
functionality for geom generation in python lib
2020-10-08 18:39:05 +02:00
3050471a2d
avoid circular inclusion
2020-10-08 18:05:03 +02:00
846cbdd2e4
Merge branch 'general-config' into 'development'
...
General config
See merge request damask/DAMASK!245
2020-10-08 00:48:16 +02:00
8d4adebea2
pyaml is now needed
2020-10-06 17:46:34 +02:00
3d49678e93
new names part 2
2020-10-02 17:51:33 +02:00
1b18cae46b
adjusted to new names
2020-10-02 17:49:52 +02:00
a04966582a
Merge remote-tracking branch 'origin/development' into general-config
2020-10-02 14:54:16 +02:00
58229b8851
relaxed test conditions
...
even threshold between -.5 and +.5 can result in a single material.
2020-10-02 13:26:11 +02:00
b29f22f513
documenting the actually available TMPS
2020-10-01 09:25:32 +02:00
a59e64a8e4
renamed TPMS and added more from additional references
2020-09-30 17:28:25 -04:00
33685bc493
allow user do control output style
...
(numerics.yaml looks strange otherwise)
2020-09-30 12:32:37 +02:00
5ad46ae021
completely tested
2020-09-30 09:05:23 +02:00
fdfcb16d15
not needed
2020-09-30 08:16:12 +02:00
bbed4f9c6e
nice formatting
...
will be checked by pre-receive hook
2020-09-30 08:15:02 +02:00
b383a4530e
better name, subclassing for easy extension to load
2020-09-30 07:53:25 +02:00
54e4943353
get rid of shell scripts
2020-09-30 07:11:33 +02:00
76f07e4c1e
tmp_path is preferred over tmpdir
2020-09-29 19:25:50 +02:00
350f5eb66a
improved from_ODF documentation
2020-09-29 12:55:00 -04:00
31f86c28f4
[skip ci] added parameter description; shortened hybrid_IA pre-loop logic
2020-09-29 11:15:10 -04:00
8d204ea445
[skip ci] small simplification
2020-09-28 16:17:43 +02:00
d2cfcdaca0
reference Data for ODF sampling (hybridIA) + skeleton of a test
2020-09-28 16:14:27 +02:00
95b85626d8
general hybridIA functionality
2020-09-28 07:40:43 +02:00
8ec1014134
Merge remote-tracking branch 'origin/development' into cleaning
2020-09-27 18:11:43 +02:00
e8e1960391
Consistency for docstrings
2020-09-26 18:02:25 +02:00
d0028b2eea
Merge branch 'development' into fix-docstrings-for-sphinx
2020-09-26 17:56:42 +02:00
9e3506b8ef
thorougly testing seeding functionality
2020-09-25 07:41:58 +02:00
e58cc4bfa0
removed substitute call for direct mapping; added seed from averaging of material ID cloud
2020-09-24 22:06:43 -04:00
e8454c40c7
more tests
2020-09-24 22:59:31 +02:00
4960cf43d4
documented and tested
2020-09-24 21:43:04 +02:00
e5b414419a
Poisson disc for periodic situation
2020-09-24 21:26:16 +02:00
ec23ab8b61
basic test for seeding
2020-09-24 21:06:26 +02:00
b5ea04424b
Merge remote-tracking branch 'origin/development' into seeds-module
2020-09-24 20:58:53 +02:00
8c8db5b99f
switched "Geom.materials" to "Geom.material"
2020-09-23 17:27:15 -04:00
b995f34834
Merge branch 'development' into geom-fully-out-of-place
2020-09-23 22:50:20 +02:00
8c83566b71
suppress warning
...
we already handle the invalid FPE
2020-09-23 21:10:39 +02:00
9bce1ddc29
simplified
2020-09-23 20:48:34 +02:00
3612b17295
corrected Sphinx warnings
2020-09-23 16:21:20 +02:00
c85d27baec
functionality for seed creation
2020-09-23 09:45:36 +02:00
ae579d8baa
allow to specify seed IDs explicitly
2020-09-23 09:28:00 +02:00
Martin Diehl