a1956436be
fixed bug introduced last time when searching for keywords in spectralOut header
...
made reading in of header more robust by explicitly using the information given by fortran specifies the data length
introduced a legacy mode again, now it is used to read old spectralOut files prior to rev 4017
2015-04-01 10:02:21 +00:00
38943c1e94
improved help
2015-03-29 15:37:40 +00:00
913c5347a5
removed handling for old legacy format (we might introduce a new one)
2015-03-29 09:08:42 +00:00
66d4ff097f
removed obsolete comment
2015-03-28 11:44:17 +00:00
72c2ead277
polishing, replace variables calculation with arrays calculation.
2015-03-27 17:58:49 +00:00
8a30021202
cleaned up core modul
2015-03-27 14:10:18 +00:00
004375cc79
removed table rewind causing problem with STDIN/STDOUT
2015-03-27 13:57:34 +00:00
1ee81e74ea
more patches to get the tests running again:
...
- fixed increment counting in postResults to current output scheme
- corrected node coordinates calculation
- some work on restart (restart test still not running)
2015-03-26 21:19:28 +00:00
69b8e02a3a
removed unwanted ASCII table data rewind causing problem for STDIN
2015-03-26 21:15:59 +00:00
643f7fe934
some comments
2015-03-26 05:04:12 +00:00
fe4373a9f9
updated post processing script for MPI IO spectralOut file
2015-03-25 16:09:56 +00:00
1a3bfc7d1f
updated according to new convention for ip and nodes
2015-03-24 13:52:40 +00:00
226381586c
compact the code of Yld2004-18p and Karafillis-Boyce, use array instead of components to calculate the partial derivative.
2015-03-16 16:42:26 +00:00
12cb5e56fe
fixed interpretation 'spectralOut' header. Seem to have been buggy all the time, but manifested itself only after keyword change. Also added ':' after keywords to be more robust
2015-03-15 15:29:38 +00:00
df2ee87a7c
corrected help
2015-03-13 14:47:22 +00:00
c4f639dbfb
prevent crash in option parsing
2015-03-13 14:46:40 +00:00
a048b2ec15
1. Implement bbc2005 yield criterion (the residum and Jacobian); 2. bbc2005 works
2015-03-13 10:07:23 +00:00
56cf1b53eb
add Fourier interplation, anisotropic Vegter yield criterion is okay
2015-03-13 08:50:47 +00:00
4b19b74d11
number of intervals is limit/delta not limit/delta -1
2015-03-13 08:39:55 +00:00
def6d6b878
re-introduced determination of elem column
2015-03-12 06:20:40 +00:00
3f340ffac9
fixed bug for table data without labels in header
2015-03-11 20:39:14 +00:00
de29524189
add Vegter criteria, planar isotropy works
2015-03-11 17:42:46 +00:00
72efc7b30c
renamed resolution -> grid, dimension -> size
2015-03-11 08:55:48 +00:00
0dde6539ed
renamed from 1_ip to 1_ipinitialcoord
2015-03-11 07:22:11 +00:00
eb1561b528
changed postprocessing to use 1_ip instead of ip.x etc, plus corrected test files headers
2015-03-10 21:15:05 +00:00
a62fa5d5dd
rewrite class Loadcase
...
1. add 2 dimension random load case generator
2. add Vegter load case generator(typical stress points in 2D)
2015-03-09 21:57:22 +00:00
271c9eed8b
use 1_ip instead of ip.x
...
Old format still as fallback option to support legacy files
2015-03-09 12:52:43 +00:00
4d587b1bf9
introduced 'alias' for ip.x by first searching for 1_ip
2015-03-09 11:32:16 +00:00
96a3cb0667
added some ideas regarding the incorporation of the vegter yield criterion
2015-03-09 11:24:06 +00:00
639b030c65
shortened code for opening input file list
2015-03-06 17:04:44 +00:00
37e40fdf79
Keep consistent with the new file: example.linearODF
2015-03-06 16:21:05 +00:00
654aacf207
removed invalid options (options.packing, options.shift)
2015-03-05 21:41:53 +00:00
5d9abc16e8
the number of grains starts with one.
2015-03-05 20:16:17 +00:00
aeb468254d
missing file.close()
2015-03-05 19:12:07 +00:00
4579a696e8
use OptionParse to parse the command-line options, add help information,
...
add the output of material.config file.
2015-03-05 19:01:31 +00:00
d188f35c17
use OptionParse to parse the command-line options, add help information, format the header of output file, now the output file can be used by hydribIA_linODFsampling.py directly
2015-03-05 17:04:16 +00:00
f1df6cf40f
copied some stcopied some scripts from the Code folder that are of interest for DAMASK
2015-03-05 10:05:00 +00:00
8c91d174fa
remove some debugging print;
...
add meshgrid2, but stick with list comprehension since it is actually faster.
2015-03-02 16:20:47 +00:00
0077177c05
some polishing (numpy —> np, theTable —> table)
2015-03-02 05:06:29 +00:00
0d7355a49f
correct help information.
2015-02-27 23:08:48 +00:00
1742725963
interpolate microstructure using Delaunay triangulation and Barycentric interpolation.
2015-02-27 22:59:09 +00:00
9203b37fbc
1. Implement Hill1979 yield criterion (the residum and Jacobian);
...
2. Hill1979 works
2015-02-25 17:24:33 +00:00
8b1846e78e
1. Implement Karafillis-Boyce yield criterion (the residum and Jacobian);
...
2. Karafillis-Boyce works
2015-02-24 16:46:09 +00:00
39e17fc95a
1. add __init__() for the "Class" of each Criterion;
...
2. Polishing
2015-02-20 20:51:23 +00:00
a3e5da0bfd
1. Implement 2D and 3D Cazacu-Barlat yield criteria(the residum and Jacobian);
...
2. Both work
2015-02-20 20:34:47 +00:00
09c357c70f
1. Fix bug of Yld2004-18p;
...
2. get deformation rate tensor and Lankford coefficient.
2015-02-20 14:40:24 +00:00
425251ae2b
fixed bug: theTable -> table
2015-02-14 11:23:50 +00:00
4a63aff1ed
1. Implement Yld2004-18p yield criterion(the residum and Jacobian);
...
2. Yld2004-18p yield criterion takes effect
2015-02-13 17:22:19 +00:00
77cffd8040
1. fix up Banabic-Balan-Comsa 2003 (BBC2003) yield criterion;
...
2. add the calculation Jacobian of BBC2003;
3. Now BBC2003 yield criterion takes effect
2015-02-12 20:48:03 +00:00
69af205721
add the calculation of Jacobian of isotropic and anisotropic Barlat1991, shows better performance.
2015-02-12 11:04:00 +00:00
40f1f3af23
add the calculation of Jacobian of Hill1948 and Drucker family criteria.
2015-02-11 19:06:23 +00:00
53b40662ec
now with executable, correct line endings, and ID tags.
2015-02-11 17:26:56 +00:00
d5f9f543ca
Script to generate PNG image from given column (or 2D data in overall ASCIItable) with custom colormap and pixel sizes.
...
Supersedes “imageFromData” from “Code” repository.
2015-02-11 17:25:49 +00:00
9eae665365
fixed ‘too many files open’ issue when processing a large list of input tables.
2015-02-11 17:22:47 +00:00
eed00007f9
Re-write the script:
...
1. replace curve_fit with leastsq, which supports the analytical Jacobian
2. specify a "class" (contains both residum and jacobian) for each criterion.
3. add the calculation of Jacobian
2015-02-11 16:49:40 +00:00
1b1ed3bbcf
removed unnecessary lines
2015-02-11 06:18:08 +00:00
40a792d785
fixed bug in consistency check
2015-02-10 13:49:47 +00:00
63434c2ddb
corrected error checking for correct type
2015-02-09 08:57:14 +00:00
7edd209ce4
corrected wrong name in add..., more verbose error checking for geom_from...
2015-02-07 22:22:28 +00:00
6140285ddd
small changes (use ip.x instead of 1_ip). Probably we should modify postResults to use the 1_, 2_, 3_, standard notation for ip as well
2015-02-07 18:13:51 +00:00
e4a94aa72b
put changes on algorithm from geom_fromEuclideanDistance into addEuclideanDistance
2015-02-07 17:11:46 +00:00
f3bab46275
addthe Cazacu–Barlat (CZ) yield criterion (3D and 2D), Banabic–Balan–Comsa (BBC) Yield Criterion.
2015-02-07 16:58:57 +00:00
cdb7795956
1. Add default boundary constraint(no constraint) and initial guess to the dictionary
...
2. With the boundary constraint of exponential term, now non-quadratic yield criteria (isotropic Barlat 1991, anisotropic Barlar 1991, Hosford) take effect.
2015-02-07 11:07:45 +00:00
0350b1829c
1. Replace curve_fit(see minpack.py) with curve_fit_bound(see damask/util.py), now the boundary constraint can be applied.
...
2. Transfer the output information into dictionary 'fittingCriteria', compact subroutine 'fit'.
2015-02-06 14:01:04 +00:00
ce09e992cc
1. Change yieldStress from 'list' to 'numpy.arrary', thanks to Martin's suggestion (3907);
...
2. Change '3*3' Cauchy stress tensor to '1*6', now the number of input 'xdata' for fitting is 6*Points, which is less than the former 9*Points.
2015-02-06 13:48:14 +00:00
0b3205a24b
some suggestions how to simplify
2015-02-06 09:29:21 +00:00
4f2c07063b
Fix general Hosford!
2015-02-05 20:18:07 +00:00
2b704b3905
Fix: Tresca, von Mises, Drucker, Hill 1948 criteria.
2015-02-04 16:47:35 +00:00
2d568b49f2
add the output of standard deviation errors;
...
fix Hill 48 and anisotropic Barlat 1991
2015-02-04 13:04:34 +00:00
3845c47e61
complement of 3897: add isotropic and anisotropic Barlat 1991 to the dictionary
2015-02-03 12:57:18 +00:00
bef846d294
add isotropic and anisotropic Barlat1991 yield criteria.
2015-02-03 12:54:16 +00:00
55445af9bc
1. add initial guess and weight to the fitting (nonlinear least square regression);
...
2. extend the dictionary:fittingCriteria
2015-02-03 12:18:53 +00:00
cc6138ec41
rewrite "def fit()";
...
add format output.
2015-02-02 17:41:19 +00:00
fd75772a3f
Fix the bug of calculating principal stresses. Now the fitting result is better for the criteria which expressed in principal stresses.
...
Thanks to Martin.
2015-02-02 16:52:28 +00:00
4772efbc45
fixed syntax error
2015-01-23 10:11:12 +00:00
2c9c04eb76
added script to replace all rows of an ASCII table by a single row containing their average
2015-01-23 00:57:10 +00:00
5be9a75cff
fixed indentation
2015-01-22 09:04:01 +00:00
440263f2f0
simplified, removed deprecated synonyms
2015-01-22 09:03:18 +00:00
ed6b4fe50a
fixed issues when having grains and eulers
2015-01-13 16:04:49 +00:00
c08f704dee
added Id + a little help
2015-01-07 19:29:27 +00:00
ca58216134
added missing math module import
2015-01-05 12:25:03 +00:00
3e3c13bf0b
added missing math module import
2015-01-04 21:02:17 +00:00
8dea16c07f
fixed wrong assignment of phase and made orientation comparison robust
2014-12-20 12:42:21 +00:00
5e8fff13d9
worked on the vtk binary out, still some problems with multicomponent datatypes
2014-12-18 21:46:38 +00:00
6604d0f8e8
polishing
2014-12-18 19:26:52 +00:00
9ac62e42df
added possibility to specify number of bins to be sorted in advance to current cleared stage
2014-12-18 18:03:36 +00:00
89f8ba979e
Add x,y coordinates of stereographic projection of given direction (pole) in crystal frame.
2014-12-13 00:12:55 +00:00
f8ce57abc8
removed aliases 'resolution' and 'dimension' for 'grid' and 'size' because some scripts did not have it anyway and the rename happened quite a while ago
2014-12-08 08:48:55 +00:00
c067d0dc69
fixed wrong periodicity treatment
2014-12-05 10:35:56 +00:00
30920801aa
extended for 2D, finds the bounding edges and assigns them 'physical' attribute.
2014-12-04 11:33:06 +00:00
47685ac7c4
added output of script ID do material.config
2014-12-03 10:09:47 +00:00
590106b889
added possibility to add randomly distributed second phase (index = indexGiven+1)
2014-12-02 22:22:11 +00:00
3cfabe3b83
standardized script name reporting
2014-11-18 15:31:39 +00:00
b17dcd7652
added options ’—origin’ and ‘—geom’. Latter interprets the geom-header to derive voxel sizes.
2014-11-18 15:26:59 +00:00
461a3fa979
fixed syntax error and added ‘—render’ option to immediately see output on screen
2014-11-18 15:24:09 +00:00
a3196669ea
exchanged deprecated data array read function
2014-11-18 15:22:00 +00:00
7136db1fd8
fixed syntax error: ’options.error’ —> ‘parser.error’ for error handling
2014-11-18 15:20:57 +00:00
99ffa554eb
added ‘1_*’ to ‘*’ as possible column label indicator
2014-11-18 15:20:10 +00:00
b5ef329f34
changed default position column format from .x,.y,.z to more standard 1_,2_,3_
2014-11-18 15:18:27 +00:00
b656113b11
added missing string import in marc_addUserOutput (introduced with rev 3718) and removed unwanted imports and introduce use of damask.extendableParser in some other scripts
2014-11-18 08:00:45 +00:00
409a75c964
fixed 2 small flaws in geom_fromAng, corrected stringID and stringName in all remaining files in 'pre'
2014-11-16 21:44:46 +00:00
6a3546cee2
script to produce ASCIItable from geom dataset.
...
contains best-practice for looping over multiple input files (to avoid error caused by too many open file handles!)
2014-11-14 15:16:00 +00:00
deee3a175a
polishing and simplifications
2014-11-14 14:53:48 +00:00
733e85f6e6
fixed bug in material.config when do not compress the data. Thanks to Noriki for figuring out
2014-11-14 13:53:55 +00:00
2d2eb4e001
using extendable option, numpy as np, etc.
2014-11-07 11:13:14 +00:00
047042ad9f
using extendable option, numpy as np, etc.
2014-11-07 11:07:03 +00:00
7d6670d4cf
fixed table —> theTable flaw in output finalization
2014-11-05 22:17:06 +00:00
52160385a6
alternative expression to parse script filename (scriptID excluding file extension).
2014-11-05 22:05:37 +00:00
9345640dfd
mainly polished for “numpy as np”. added alternative expression to parse script filename (excluding file extension).
2014-11-05 22:04:59 +00:00
35f8b9786e
changed way to sample grid positions when placing primitive object. Should be somewhat more efficient now.
2014-11-05 22:02:40 +00:00
f7da804927
changed file handling to allow for serial processing of large file numbers.
2014-11-05 22:01:11 +00:00
f6741138e7
had badly messed up the file handling in commit 3630. STDIN did not work, files were not checked for existence…
2014-10-29 13:27:40 +00:00
bdd2d55383
small bug fix for last commit
2014-10-24 06:36:01 +00:00
13ba71a314
fixed bug where option.condition was altered in processing of first file, thus preventing additional files from seeing the same user input.
...
changed file handle setup to allow for large lists of input files.
2014-10-23 21:23:10 +00:00
e779c2e1e6
specify mesh size
2014-10-21 14:42:13 +00:00
975e42b132
specify which surface(s) you want to tag
2014-10-21 13:57:17 +00:00
8dd575cdbe
now making use of parser options for input arguments
2014-10-17 11:51:22 +00:00
0193578540
now appending the bounding surface information to the gmsh geometry file
2014-10-16 17:23:17 +00:00
7e0c6f420b
added shebang script to make executable, some properties and few improvements. Now giving the bounding surfaces.
2014-10-16 15:53:46 +00:00
dc7a4bb978
using damasks extentable option + correct version string
2014-10-16 14:56:44 +00:00
ff0f619015
started to write a script for finding bounding surfaces from gmsh geo file.
2014-10-16 14:07:25 +00:00
ce1f17c9cb
worked on the binary vtk out needed for large datasets
2014-10-14 07:13:13 +00:00
5e16cdd14f
added support for multiple entries per line
2014-10-13 13:58:26 +00:00
e1530afac7
test for geom_fromTable (does not work for empty black or whitelist)
2014-10-13 09:54:01 +00:00
f4de982182
svn caused trouble due to rename, again some missing files
2014-10-10 12:11:10 +00:00
46d67f63d8
added test for converter from Ricardo's files
2014-10-10 08:54:48 +00:00
57e522566a
updated python style
2014-10-09 17:03:06 +00:00
47c8bfeacb
commented code
2014-10-09 11:01:07 +00:00
d86f091026
some small fixes, reporting still needs update
2014-10-06 12:47:52 +00:00
2836b2fb35
work in progress, extending to more criteria
2014-10-03 09:27:20 +00:00
033a275d82
a bunch of small changes. deleted compiled FFTW libraries
2014-10-02 21:27:03 +00:00
23ee538dcb
shortened syntax. fixed undefined file['croak']
2014-10-02 04:49:46 +00:00
bfe20a3af8
added $Id$ property and LF line endings.
2014-09-29 15:57:31 +00:00
f2d9d66129
improved readibility, fixed negative coordinates, improved output
2014-09-29 15:55:17 +00:00
ff475f1459
first draft of a constraint voronoi tessellation to match grain distribution
2014-09-29 10:19:49 +00:00
496c3d4bc8
added line breaks identifier and $Id$ flag
2014-09-25 21:54:42 +00:00
b85797c109
significant speed improvement for large grids.
...
polished messages and fixed error reporting bug.
2014-09-24 23:47:52 +00:00
78ab14806f
fixed bug in parser option type definition
2014-09-21 17:59:06 +00:00
14530b0a76
fixed bug 'the table' instead of 'table'
2014-09-19 15:24:59 +00:00
d07a098724
fixed wrong help introduced with last change on 3Dvisualize
2014-09-19 09:50:26 +00:00
a7d831de06
forgot to import python module
2014-09-15 10:07:52 +00:00
5657119b11
updated post processing test: rotateData is doing something, corrected addDeviator defauls
2014-09-12 14:49:26 +00:00
f2c4db0bb5
correcting help and default, some comments
2014-09-12 14:46:12 +00:00
afb9a2186b
removed explicit default setting: type='string' and action='store'
2014-09-12 14:14:55 +00:00
9ba7851c14
fixed bug in calculation of spherical part. Variables in python functions are intent(inout) in Fortran language!
2014-09-12 13:13:05 +00:00
5f986f3d54
updated to contain latest python improvements
2014-09-10 16:14:37 +00:00
5a159dcdfa
script to add scalar data and/or RGB color tuples to rectilinear VTK file (*.vtr)
2014-09-05 20:28:39 +00:00
e286cf4c74
fixed bug "theTable" instead of "table"
2014-09-03 14:53:12 +00:00
b566eed5a8
fixed error in last commit
2014-08-28 18:50:48 +00:00
5d96f62b44
fixed bug "theTable" instead of "table"
2014-08-28 17:37:27 +00:00
6cdcdecdfa
post processing scripts are working again.
...
@Philip: definining one offset for shiftData and one factor for scaleData for tensor/vector/special>1 seems to be more reasonable than per component
2014-08-25 21:13:39 +00:00
d93c40a3dd
fixed small bug ('theTable' instead of 'table') and simplified
2014-08-25 12:53:11 +00:00
1ba7cbb046
fixed small bug ('theTable' instead of 'table') and simplified
2014-08-25 12:39:12 +00:00
c7837e1f66
changed manual input/output close to class method
2014-08-22 16:58:53 +00:00
99e3c9a397
fixed (potentially) buggy rotation of tensors. convention is:
...
with A v = b
v' = R v
A' = R A R^T
such that
A' v' = R A R^T R v = R A v (= R b = b', i.e. old result transformed into other coordinate basis)
2014-08-22 15:32:48 +00:00
df27115472
extended "scalar" capabilities to "special" having arbitrary dimension (defaults to 1, i.e. former scalar case). Breaks backward compatibility since "--scalar" is now "--special". However, "-s" still works as before...
2014-08-22 15:25:51 +00:00
9d26bfa375
try to go on despite crappy data (containing dead ends in the segment network)
2014-08-21 17:23:16 +00:00
77df55c998
extended "scalar" capabilities to "special" having arbitrary dimension (defaults to 1, i.e. former scalar case). Breaks backward compatibility since "--scalar" is now "--special". However, "-s" still works as before...
2014-08-21 17:16:43 +00:00
9aa22d4a08
simplified column key generation
2014-08-21 16:17:23 +00:00
96b16dd97b
reshape "matrix" input data from (currently wrong) 9x1 to 3x3 layout.
...
simplified input validity check.
2014-08-21 16:14:06 +00:00
0bcd508298
added new option "no-data" to omit output of microstructure data field, i.e. generates plain mesh only
2014-08-21 16:01:11 +00:00
b573d06c3f
fixed bug where initial microstructure array was allocated (factor 2) too large in anticipation of later 2D tiling.
2014-08-18 21:32:53 +00:00
c6eab9dab7
fixed wrong order in linear interpolation for stress
2014-08-18 20:09:09 +00:00
e637f6344c
added possibility to fit to more than one yield point, now using linear interpolation between around given threshold value
2014-08-18 18:21:36 +00:00
ad7fe1ecbc
fixed bug (wrong index in stress tensor for Hill48) and possible deadlock
2014-08-10 21:22:22 +00:00
15a6015bc2
added some more post processing tests
...
DAMASK env now reports in MiB (GiB is too big for small machines)
2014-08-07 16:51:26 +00:00
df50707445
fixed some small flaws
2014-08-07 16:16:02 +00:00
c8f16f16fa
fixed bug in hill criterion
2014-08-06 20:07:47 +00:00
649e637561
added some more post processing tests and improved output
2014-08-06 19:06:33 +00:00
938352d43a
fixed calculation of size and dimension in case of 2D (was limited to third dim only)
...
plus polishing
2014-08-06 15:25:18 +00:00
cbafad50d0
some more work on the postprocessing scripts, decreased test tolerance because spectral decomposition has rounding errors (depending on machine/python/numpy version)
2014-08-06 13:27:09 +00:00
96fe818f5d
added more options to command line
2014-08-05 14:29:36 +00:00
b4b9835d18
some work on the yield surface generator
2014-08-04 21:15:56 +00:00
a0f9865133
updated to state-of-the art file handling etc
2014-08-04 20:07:20 +00:00
0874ebe096
new script to name abaqus output like in for marc.
...
written by B Bode from University of Kassel
2014-08-04 18:41:44 +00:00
7df8f04f65
updated test for postprocessing and improve some of the scripts
2014-08-04 17:53:41 +00:00
5556dad13f
updated to latest ASCII table handling style
2014-07-28 15:34:11 +00:00
0b93e7c5a5
corrected addDivergence script. Restarting still not working for new state, needs further investigations: tightend tolerances again
2014-07-27 09:43:00 +00:00
e01630e073
fixed bug in tuple assignment
2014-07-25 17:49:22 +00:00
bee6e0b09b
added optional weighting column
2014-07-25 16:38:04 +00:00
a804b23b7a
bugfixing
2014-07-24 22:02:10 +00:00
d0ecc0943c
added addPK2 script to test
2014-07-24 21:42:13 +00:00
7954c9a4a3
more and improved tests for add...
2014-07-24 20:21:18 +00:00
38048a09f2
introduced use of choice for argparse where applicable
2014-07-24 18:47:09 +00:00
42032cbc25
started to restructure fitting to criterion
2014-07-22 21:59:58 +00:00
e5dc9e79cc
some more changes improving the post processing scripts
2014-07-22 14:21:49 +00:00
e8d2e787bc
updated first 9 post processing scripts to latest ASCII table handling style
2014-07-21 19:55:05 +00:00
c8cd775747
added spectral solver grid location and index function to util library
2014-07-21 17:49:45 +00:00
2f0ecdf7e8
improved file handling etc. to follow newest style
2014-07-16 16:41:04 +00:00
e7c282a02d
some further improvements on ASCII table handling
2014-07-10 09:27:51 +00:00
f72a87f94b
polished scripts (option parser, numpy)
2014-07-09 10:07:24 +00:00
fd2164b391
von Mises fitting seems to work, still needs polishing (adding options etc)
2014-07-09 09:31:26 +00:00
5f638a059a
corrected string substitution
2014-07-09 07:17:58 +00:00
fdb4f2ffea
now the program flow is working
2014-07-08 16:09:02 +00:00
826f3d4dc7
added possibility to rotate primitives.
...
better help text.
2014-07-07 17:32:37 +00:00
7a478d646a
added call to DAMASK spectral
2014-07-07 14:17:44 +00:00
a48b4cfc95
improved dummy yield surface generator
2014-07-04 13:40:15 +00:00
a68fe7c77b
first draft of a script to compute yield surfaces with the spectral solver
2014-07-02 10:42:51 +00:00
1ff38b98af
fixed error in file handling
2014-06-18 09:00:57 +00:00
51b92f3ef9
simplified option parsing (so far, only for addCalculation and addMises)
2014-06-17 07:10:10 +00:00
596ee18da9
improved the regex for header reading
2014-06-08 14:43:32 +00:00
31aded8311
no scaling of the output by size (seeds files are within 0..1)
...
plus some polishing here and there
2014-06-08 12:48:32 +00:00
b0ab048d7b
now aware of "origin" keyword in seeds-file
2014-06-07 18:15:08 +00:00
e3c4e0ecfc
added option to override bounding box calculation from data with own geometry.
2014-06-07 18:14:30 +00:00
72e9c512bd
polishing of variable names, comments, and some of the programming structure.
2014-06-07 18:13:29 +00:00
2f249773c9
fixed missing Python module
2014-06-06 15:11:15 +00:00
32b315487c
removed debug printing
2014-06-06 14:46:41 +00:00
59e8cd1d7e
new script: Add data in column(s) of second ASCIItable selected from row that is given by the value in a mapping column
2014-06-06 14:35:37 +00:00
63c1a0a212
updated to croaking, scriptID, IO-piping.
2014-06-06 09:43:28 +00:00
522efaac92
added immutable option
2014-06-05 17:18:52 +00:00
9834c8466c
scripts to scale, shift, and rotate scalar, vector, or tensor quantities of ASCIItables (in-place!)
2014-05-27 08:08:10 +00:00
3ec323e564
Create seed file by taking microstructure indices from given ASCIItable column.
2014-05-26 14:57:39 +00:00
f81c6f6890
changed ASCIItable reading from _asArray (deprecated) to _readArray.
...
observe physical box size.
added compatibility to VTK > version 5.
2014-05-26 14:35:25 +00:00
65f1f55a87
added option to pre-rotate orientation (change lab frame)
2014-05-26 14:31:42 +00:00
51e7f9eed9
added --reverse option. corrected help hint regarding sorting order
2014-05-23 14:05:58 +00:00
06715dc99f
added "no data check" and updated script backbone to be consistent with other scripts (croak).
2014-05-19 13:43:26 +00:00
89c896678b
added printing of cli arguments to seeds_fromRandom, fixed regression in compile_CoreModule and DAMASK_spectral_doxygen
2014-05-15 09:58:31 +00:00
8a80f5ec7a
fixed typo that prevented selection of "Moore" neighborhood.
...
made "boundary" and "biplane" synonyms.
adopted more modern treatment of geom-files.
introduced scale for voxel size (independent of physical size and resolution given in geom-file).
2014-05-14 15:26:06 +00:00
8b9ed55928
small "beautification"
2014-05-13 15:03:55 +00:00
13f1607e15
changed default behavior to (system-provided) random seed instead of fixed "0"
2014-05-03 02:36:23 +00:00
0885ea8023
changed variable interpolation to be useable in connection with dictionary definitions for formulas. Slightly less efficient but now much more powerful...
2014-05-02 19:56:56 +00:00
a8a9c8eef5
added possibility to not sort (--sort none) output by its --separation such that the output can be used in conjunction with the VTK files produced by DAMASK.
2014-04-14 21:45:24 +00:00
a85ea307f1
changed (with backward compatibility) option "origin" to more suitable name of "center" since it specifies the position of the primitive's center, while "origin" could be mistaken for the lower left corner or such...
2014-04-09 14:22:27 +00:00
babde13c6a
capture missing --vtk option
2014-04-03 01:00:00 +00:00
33af5af8cb
some small changes on the header/shebang
2014-04-01 19:29:14 +00:00
342ca0be47
tested new scripts to update shebang, all files got same shebang (and for python files encoding)
2014-04-01 18:41:14 +00:00
782b54a430
more LF, Id, and executable status changes
2014-04-01 17:52:31 +00:00
559f14ca35
prepended *draw_manual for faster processing in "new" Mentat, thx Christoph
2014-04-01 17:06:10 +00:00
188002f16e
more LF, Id, and executable status changes
2014-04-01 16:58:54 +00:00
c254f87814
now assuming periodic microstructures (was not fully correct before, assuming non-periodicity)
2014-04-01 16:43:39 +00:00
16743f8631
explicitly state unbuffered ASCIIoutput
2014-03-28 18:15:37 +00:00
f19955c84a
added options to specify the columns for the grain IDs and segments
...
improved error handling
2014-03-12 14:26:44 +00:00
0363b1fb04
updated reporting (according to addCauchy)
2014-03-10 14:01:39 +00:00
e10f8f1b5e
corrected typo
2014-03-04 16:43:22 +00:00
943349fdbb
bunch of new scripts:
...
gwyddion_filter tries to smoothen out Gwyddion data sets.
vtk_fromGwyddion produces vtk mesh from Gwyddion data set.
geom_addPrimitive allows to add box, cylinder, or ellipsoidal blobs to geom file.
2014-03-04 03:34:34 +00:00
6fd8407d6e
moved "predefined" to colormap init
...
cleaned interpolate to not change color model
fixed color range cropping issue
2014-02-28 16:09:01 +00:00
63569b19b6
added use of "defaultdict" from collections
2014-02-28 15:56:28 +00:00
fdbde250dc
deleted obsolete table.data_rewind to be pipe-safe
2014-02-28 15:55:48 +00:00
27c83f60a6
fixed typo
2014-02-26 15:05:34 +00:00
7f08c976c3
skip file if mandatory column not found in ASCIItable
2014-02-26 14:56:06 +00:00
98a8b47a09
can now read legacy VTK files with unstructured grid data
2014-02-24 19:23:08 +00:00
9d402022aa
fixed small bug when using renumber option
2014-02-15 10:37:50 +00:00
371a027de9
added option '--renumber' to geom_rescale and geom_grainGrowth to renumber microstructures from 1 to N (without gaps), off by default.
...
added metavar information to some scripts
2014-02-14 13:17:29 +00:00
a659d071a9
added '--degrees' option to indicate Euler angles unit
2014-02-10 18:01:21 +00:00
85e4896478
"--degrees" option to specify Euler angles in degrees (instead of radians)
2014-02-09 20:36:42 +00:00
ccb950f3d8
checked Unix command piping conformity -- seems to now work:
...
seeds_fromRandom |
geom_fromVoronoiTessellation |
geom_grainGrowth |
geom_unpack |
geom_pack
However, grainGrowth functionality seems broken...
2014-02-03 23:44:29 +00:00
f66c0727d0
fixed wrong type for arguments introduced last time (must be string to have multiples)
2014-02-03 20:23:49 +00:00
7a9fa061de
added --compress option: for ang files filtered to have single orientation in grain (OIM filter), microstructure and texture in material.config are compressed
2014-01-30 12:00:20 +00:00
3c2af8e7a6
fixed dropped file handle when flushing closed output...
2014-01-29 21:16:44 +00:00
24d7f55f55
check whether output is already stopped (in command piping for instance)
2014-01-29 21:13:36 +00:00
cd18ec2abf
removed unneccesary table.data_rewind, which breaks command piping
2014-01-29 21:03:56 +00:00
ee99216edc
polishing compile_CoreModule, bug fix for Makefile
2014-01-28 07:34:13 +00:00
1bd456aa22
corrected options.error --> parser.error
2014-01-27 14:30:37 +00:00
a1cfc85d74
produce VTK unstructured grid with voxels around all points given in an ASCIItable.
2014-01-27 14:10:29 +00:00
13fed38a2f
add scalar and RGB tuples from ASCIItable to existing VTK voxel cloud (*.vtu)
2014-01-27 14:05:03 +00:00
c9c6588f7c
renamed seeds file related scripts in a (hopefully) consistent manner
2014-01-23 20:48:33 +00:00
eda9076157
use existing geom file and produce seed points from each voxel (filtering possible)
2014-01-23 20:43:42 +00:00
8b4af554ba
added verbosity on help messages
2014-01-20 14:41:56 +00:00
649b8b91fe
fixed reporting of arguments
2014-01-15 15:10:13 +00:00
db18b3c77f
added missing script arguments in documentation part of the header
2014-01-14 10:53:45 +00:00
0f101c8dbf
adopted to improved HDF5 format
2014-01-13 16:22:01 +00:00
aab0208c65
more modifications, only configure needs modifications
2014-01-12 17:29:00 +00:00
a614e76968
first post processing script for HDF5 output
2014-01-07 20:42:51 +00:00
4f30a6e05b
now compatible with new table.data_readArray method
2013-12-31 21:06:32 +00:00
2f1db8f69a
introduced delimiter option (default = tab) for ascii table output, use space for geometry files
2013-12-17 08:16:29 +00:00
e20ffb379d
changed numpy.readtxt logic from "data_asArray" returning a copy to inplace "data_readArray" now directly storing into self.data
2013-12-14 03:51:22 +00:00
600389ac44
new script to sort ASCIItable according to (multiple) columns
2013-12-14 03:48:50 +00:00
37046cd2ea
changed Fortran standard to 2008
2013-12-12 22:30:22 +00:00
0f8790c148
clarified help string
2013-12-12 08:48:57 +00:00
10c8a1a3ce
corrected typo in usage hint
2013-12-12 02:35:01 +00:00
894776ca67
fixed stupid bug addressing a dict by dict{key} instead of dict[key]
2013-12-11 14:30:27 +00:00
44b3687e7c
added option to invert output data range (1.0 -- 0.0 instead of 0.0 -- 1.0)
2013-12-10 00:27:22 +00:00
e4cea31a9d
small bug fix: options.error --> parser.error
2013-12-09 15:58:35 +00:00
e2d4cc8b3d
fixed former nonsense definition of lab frame direction
2013-12-09 15:57:21 +00:00
26690859bb
deal more gracefully with problematic user input.
2013-12-09 15:54:47 +00:00
7fb1a3130a
now VTK 6 compatible
2013-12-09 15:41:29 +00:00
c7ac903dc7
fixed missing comma in script list...
2013-12-09 15:37:36 +00:00
090fca8683
deleted left-over debug statement
2013-11-26 20:24:40 +00:00
d498eca242
deleted left-over debug statement
2013-11-26 20:22:52 +00:00
b63d2eafe8
new scripts for:
...
-generating vtk point cloud from x,y,z ASCIItable data
-adding scalar values and color tuples from ASCIItable to vtk point cloud
-permuting data in ASCIItable columns (used to shuffle ordered grain indices)
2013-11-26 20:19:27 +00:00
a45c7dbb62
new ASCIItable scripts to add
...
- quaternion and/or Euler representation of lattice orientation (given in rotation matrix, etc.)
- RGB color code of crystal direction in laboratory frame (matching closely the TSL-OIM scheme of inverse pole figures).
2013-11-25 19:11:02 +00:00
0337b4f319
added script to produce VTK point cloud from seed file coordinates
2013-11-20 17:33:05 +00:00
feaccae652
set threshold for values treated as zero to 1.e-12 (was 1.e-15) to avoid flip in strain direction
2013-11-19 19:39:14 +00:00
e1e76cb257
fixed bug in OIMang_hex2cub.py, added test for correct number of microstructures (should be equal to header info)
2013-11-14 17:37:42 +00:00
d2cbca35b2
fixed syntax error in last commit
2013-11-13 12:51:48 +00:00
9b7007b937
added accidently deleted output of texturei again
2013-11-13 12:46:20 +00:00
103ae3cd0d
introduced on the fly copying for 2D microstructures in 3 dimension
2013-11-12 17:04:36 +00:00
fc8811c07d
switched to faster algorithm and removed buggy multi-threading
2013-11-11 13:00:31 +00:00
9ac8846e41
compiling with hdf5 is now working for DAMASK (if HDF5=ON) and for playground example in private
2013-11-07 12:52:36 +00:00
463ecfd296
switched to damask.ASCIItable parsing, now aware of synonyms in geometry header, and speed-up by some orders of magnitude due to scipy.ndimage.filters use...
2013-11-04 14:12:10 +00:00
1ff98296b3
added output of default values, still does not run for my geometry
2013-10-25 11:58:03 +00:00
5c1c0028e0
throw error if RCB segment list is not properly connected, i.e., complain about "dead ends" along the segment chain.
2013-10-24 18:55:16 +00:00
705d23a5ed
fixed bug for non-present "microstructure" info in header.
2013-10-15 12:36:52 +00:00
47577e3d11
introduced synonym "grains" for deprecated "grains" to ensure backward compatibility
2013-10-15 09:50:20 +00:00
6f467c0789
added "-fPIC" flag to make sure (independent of local f2py settings) that position independent code will be generated for the shared "code" object in DAMASK's python lib
2013-09-23 19:07:12 +00:00
9280b0a4e2
fixed bug where configuration wrote floating point numbers for grain IDs and texture IDs.
2013-09-23 18:35:30 +00:00
1915215c6f
commented out not working use of vtk class
2013-09-20 11:27:11 +00:00
3eb8aa1362
checked for python3 compatibility:
...
use "print('foo')" instead of "print 'foo'"
and "except(error) as e" instead of "except error,e"
2013-09-14 10:52:02 +00:00
a17b85cba8
deleted wrong colormap script, was there twice. correct one (modified recently by Philip) is called perceptualUniformColormap
2013-09-11 08:15:05 +00:00
022696c8f3
fixed output to screen
2013-09-11 07:45:42 +00:00
538a471246
updated $Id$ handling.
...
added (colored) my script's name reporting.
2013-09-09 14:12:00 +00:00
ec6587e7f5
corrected help message
2013-09-09 14:11:16 +00:00
f02ee16b3d
fixed missing comma in "pre" symlinking list.
2013-09-09 14:09:38 +00:00
b3463b2ed6
added intel openmp library to linking list. (-liomp5 was necessary when using IMKL...)
2013-09-09 14:08:44 +00:00
7bbee3fe60
write size as exponential not float, otherwise small numbers get rounded (to zero)
2013-08-21 15:25:27 +00:00
4f7cd76b29
renamed texture_rotation into texture_transformation
...
changed keyword for material.config to axes in line with geom_fromAng.py
former keyword rotation is still recognized for compatibility
2013-07-24 11:09:39 +00:00
d2ccc06aee
added line break between rotation and euler angle information for correct parsing of config file
2013-07-23 14:33:30 +00:00
c8cc397bf4
small bug fix
2013-07-23 12:40:26 +00:00
26df077c2a
translating scalar data that contain vector components to vector data
2013-07-22 08:24:04 +00:00
69b3359047
forgot in last commit
2013-07-18 13:31:40 +00:00
2201a73a46
added (?correct and working?) rotation for conversion from ANG and updated bold verbosity of all other scripts
2013-07-18 13:28:54 +00:00
a39005ef1c
added possibility to specify formula with array return type
...
added support for numpy
2013-07-16 21:48:23 +00:00
7d5f1270d5
fixed nasty bug that prevented proper grid rescaling
2013-07-16 21:11:44 +00:00
cb09c17fa2
simplified $Id treatment.
...
now reports own name in bold during runtime.
2013-07-10 09:15:42 +00:00
31e0469b34
changed key "grains" to "microstructures" to be consistent with .geom description later.
2013-07-10 09:14:53 +00:00
f75604c235
fixed bug in output of origin (reported size instead)
2013-07-10 09:13:21 +00:00
fafa69b846
added possibility to have microstructure indices for seed points. Hence, multiple seed points can belong to the same final grain.
2013-07-10 09:12:00 +00:00
0fa9f7dc22
can now show data for tables lacking column labels (use option --nolabels)
2013-07-08 11:56:16 +00:00
930e605afc
bug fixes and more optimizations
2013-07-03 00:48:21 +00:00
34ef7b0f34
now fully anisotropic grain growth possible by setting up the function "interfacialEnergy"
2013-07-02 04:32:32 +00:00
5ff8a7067e
fixed bug and re-reverted to faster version. added python multiprocessing functionality. polishing and renaming
2013-07-01 17:15:24 +00:00
89cea68bc5
now using ASCIItable object and numpy array.repeat --> about 50x faster for large geoms (i.e. several mio voxels).
2013-06-30 19:11:16 +00:00
39758f5c53
removed twoD option remnants
2013-06-30 19:09:01 +00:00
1f891c544d
now using ASCIItable object (much faster file writing).
...
(temporarily) switched back to rev2496 logic...
changed to diffusion distance as command line argument (instead of taking sqrt(time))
2013-06-30 13:51:21 +00:00
dd3d53e238
simplified grid/size synonyms treatment
2013-06-30 13:47:01 +00:00
21c4447955
polishing and code unifications
2013-06-30 12:35:04 +00:00
24fc14c2f3
fixed small syntax error introduced in last commit...
2013-06-30 00:46:52 +00:00
77aa1c27b0
now based on damask.ASCIItable object
...
continue with next if one file is broken (used to stop!)
packing of already packed works now
overall speed improvement
standard unpacked output is 2D: use -1/--onedimensional for linear list
2013-06-30 00:39:48 +00:00
fcc2736431
now based on damask.ASCIItable object
...
continue with next if one file is broken (used to stop!)
improved index substitution and adopted more numpy functions --> notably faster
2013-06-30 00:37:03 +00:00
f204c38d4d
now based on damask.ASCIItable object
...
continue with next if one file is broken (used to stop!)
switched to numpy functions for geom reshaping and writing --> 10x faster
2013-06-30 00:34:16 +00:00
7d6035dcfa
now based on damask.ASCIItable object
...
continue with next if one file is broken (used to stop!)
2013-06-30 00:31:44 +00:00
da1b4ff05b
now based on damask.ASCIItable object
...
switched to numpy functions for grid generation --> about 20x faster.
2013-06-30 00:30:06 +00:00
b2c8a7e345
removed tabs (and extended tab-awareness of pre-commit hook to python scripts)
2013-06-29 21:14:58 +00:00
e3a1e70542
started to use vtk class for writing results
2013-06-27 18:21:20 +00:00
4537720895
faster version for large number of grains. now performing diffusion on a small window around each grain where window around each grain is obtained cheaply
2013-06-27 16:57:14 +00:00
034a6bc926
grid dimension can be changed by factor ("2x"), or left alone with number <= 0.
...
now understands packed geom structure.
2013-06-27 15:35:49 +00:00
5f347648e1
now understands packed geom structure
2013-06-27 15:34:37 +00:00
76171eec15
added possibility for factors---indicated by "x" at the end---and left-alone condition now comprises "0" as well as "negative numbers. understands packed structures, too.
2013-06-27 12:58:12 +00:00
13227dff0f
corrected calculation of origin
2013-06-22 14:13:29 +00:00
8b5ba9f8f0
now understands packed geom-files (much faster processing...)
2013-06-21 21:19:14 +00:00
4cf2e75dc1
justification of numbers done with space instead of "0"s
2013-06-21 21:18:10 +00:00
e53c67f0e0
added black list for immutable microstructures.
...
now able to parse packed geom-files.
2013-06-21 21:17:03 +00:00
3b4573301c
removed now obsolete Moore neighborhood array
2013-06-21 19:10:10 +00:00
5d15f68914
added help description.
...
fixed bug for grain index (+1).
renamed some variables and added a few comments.
2013-06-21 19:08:20 +00:00
2e8756b724
faster version of smoother using the scipy gaussian filter to get the diffused microstructure and vectorized sharpening of the diffused microstructure
2013-06-21 16:59:49 +00:00
45951e27c5
script to smooth out interface roughness in a (polycrystal) geom
2013-06-20 19:45:25 +00:00
0740845d81
allow coordinates to not be in consecutive columns
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keep origin of original data set
2013-06-20 07:36:35 +00:00
e6499e1a39
renamed script in order to distinguish from "add" scripts that act on ascii tables
2013-06-13 09:05:30 +00:00
920195809c
fixed bug in auto determination of size and grid
2013-06-11 10:11:14 +00:00
becacb675a
linear reconstruction no longer needed for odd resolution
2013-06-05 14:05:11 +00:00
Martin Diehl