a451a69c2c
corrected default type (only list for 'extend')
2015-05-14 18:48:15 +00:00
fa1368204d
fixed bug in asciitable when updating labels for readArray, fixed checking for euler angels presence in tessellation, improved help
2015-05-14 17:07:50 +00:00
7ea350b90e
corrected default for multiple arguments of fixed length (tuple, not list)
2015-05-14 10:00:56 +00:00
3e8f16c515
range parameter is now autoscaled to account for -log option, i.e. range is always given as bounds of original data
2015-05-13 13:45:26 +00:00
b0a37497a1
fixed buggy coordinate transform.
2015-05-12 15:30:00 +00:00
6a98c7efad
simplified option parsing
2015-05-11 20:12:31 +00:00
4899b3df0a
found some unused (forgotten debug) statements
2015-05-11 20:09:49 +00:00
2102fadfc7
improved help for automatic documentation
2015-05-11 19:47:52 +00:00
537c42d146
script to transform coordinate system at APS beam line 34-ID-E from X,Y,Z,F to strain x,y,z
2015-05-11 14:15:50 +00:00
eff71b418b
now working with corrected asciitable
2015-05-10 20:59:23 +00:00
6f112b46b5
can be done with TSL OIM in current versions
2015-05-10 15:56:59 +00:00
b60f868a76
renumbering asciitable when readArray for selected columns only
...
test no longer for deleteColumn
2015-05-10 11:29:11 +00:00
8bf7a7ef6a
some beautifications
2015-05-10 10:58:32 +00:00
c0a9141c8f
updated help to enable automated documentation
2015-05-10 10:56:02 +00:00
a03b1ede99
improved help for automatic documentation
2015-05-10 08:59:21 +00:00
d87b70fe49
filterTable can do the job
2015-05-09 21:33:17 +00:00
18831e0e80
improved help for automatic documentation and simplified some scripts
2015-05-09 21:32:23 +00:00
47b8605733
improved help for automatic documentation and simplified some scripts
2015-05-09 13:01:31 +00:00
59e546e3d7
improved help for automatic documentation and simplified some scripts
2015-05-09 12:45:30 +00:00
d0180540eb
fixed bugs introduced with last commit and restored capability of handling legacy seeds format
2015-05-08 05:02:44 +00:00
cb42fb9c5d
clarified help text.
2015-05-05 16:58:56 +00:00
f5ccc37125
re-write Karafillis-Boyce yield criterion, the old version is actually the generalized Karafillis-Boyce yield criterion, i.e., Born-Besson yield criterion, which has three exponents, it seems unstable. Now retreat to the original Karafillis-Boyce yield criterion (Karafillis, Boyce 1993), which has only one exponents.
2015-05-04 15:00:02 +00:00
1e6c4fa988
re-write Yld2000
2015-05-04 14:54:48 +00:00
e0e7bb7a24
fix bugs of barlat1989, barlat1991
2015-05-04 14:52:33 +00:00
ce0675f359
added options for laguerrre tessellation
2015-05-02 07:41:14 +00:00
58b3d017bd
changed option name from “invertColor” to “invert”
2015-05-01 17:58:10 +00:00
afe7225357
add the option of exporting '.ctf' format file.
2015-04-28 18:09:07 +00:00
c05df20370
throw error message when DAMASK output obviously not present in T16 file
2015-04-28 17:54:00 +00:00
f8e06b488a
make the script consistent with other scripts:
...
1. use new file handles
2. add scriptID and version
2015-04-28 17:47:06 +00:00
906c3f63a1
updated hybridIA sampling to work with new format
...
cropLinearODF is not working for the new format, but filterTable should be able to do the task
2015-04-27 05:30:29 +00:00
1b9595d012
1. add the option 'all', fit all criteria automatically
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2. generate equivalent stress automatically for advanced criteria.
2015-04-25 17:08:38 +00:00
a55b0c54c6
change the unit of stress
2015-04-25 16:22:32 +00:00
edb559d2fa
1. Judge the validity of stress points, and skip the invalid stress points.
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2. change the defaulted unit
2015-04-25 16:19:06 +00:00
895421e677
changed from core module fftw to fftwpack from latex, tolerances need to be less strict
2015-04-24 08:07:13 +00:00
b9c5edf7ab
changed to standard file and output handling
2015-04-22 18:57:44 +00:00
2e6bbe887e
changed header in seeds file from 'x,y,z' to '1..3_coords'.
...
scripts now use the header information and do not rely on coordinates being in the first three columns
2015-04-22 18:44:54 +00:00
0cec85ac63
corrected order of output, config file output is not supported yet
2015-04-21 19:37:03 +00:00
46c33b0d98
polishing
2015-04-21 18:55:10 +00:00
4581e22a0f
change reading in to standard loop over files
...
getting bins now from header information
format of linearODF now standard ASCII table style with header/keyword/label
2015-04-20 14:22:45 +00:00
f43afa13d8
simple script to generate geom file from stacked tiff images.
2015-04-20 12:57:45 +00:00
f5762209dc
changed 'range' keyword to 'limit', now using proper ASCII table (with column 'intensity') for linearODF
...
hybridIO_linODFsampling simplified
2015-04-15 14:37:46 +00:00
64764b0902
introduced moving of multiple seeds at the same time
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introduced more suitable check for convergence of the first bin. Improvements in bringing seeds with a size outside the range of the target closer are no longer invisible
2015-04-14 12:42:35 +00:00
790aa32b1b
fixed string to character splitting of weight column label
2015-04-13 20:24:03 +00:00
4bcc80911e
changed grid to float from (wrong) integer type.
...
row and column probability density normalization now takes place BEFORE limiting data range.
2015-04-13 19:55:28 +00:00
d008b566b4
ensure to bring all seeds within target range
2015-04-10 20:47:20 +00:00
9d3cd8f997
added options do define number of maximum seeds to move simulateneously
2015-04-10 18:08:17 +00:00
4aa63e1ab9
handling of seeds files without microstructure (but eulerangles)
2015-04-10 16:59:08 +00:00
09bfd1e18e
more verbose error handling for euler angles limits
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ensuring that ROUNDED euler angles are not above the limits
2015-04-10 14:50:23 +00:00
e01e270300
improved search for double microstructures (was N^2 bogosort) in geom_fromAng and introduced it in geom_fromVPSC
2015-04-10 12:57:25 +00:00
5257a2161f
added options for x and y normalization
2015-04-09 06:45:21 +00:00
57a2c90d30
corrected according to vtk specification and remove an unused option
2015-04-08 18:48:35 +00:00
976647b9e4
add the convergence criterion, the method is :
...
1. calculate the L2 norm of the residual of all the stress points
2. store the relative errors of the L2 norm
3. if the standard deviation of the relative errors of last five fittings is less than 0.05, that it is considered that the relative errors is stabilized, so the fitting is finished.
2015-04-08 17:48:26 +00:00
b77768fd4d
all the criteria support plane stress
2015-04-08 16:24:20 +00:00
0544706c7b
corrected help for legacy format
2015-04-08 12:51:40 +00:00
6e650a42b4
some comments for discussion
2015-04-07 07:42:46 +00:00
ab89c84ec8
Correct the message of last change
...
1. rename BBC2003 as BBC2000;
2. add the real BBC2003 yield criterion, BBC2003 works;
3. now the BBC family yield criteria include: BBC2000, BBC2003, BBC2005
2015-04-03 21:01:37 +00:00
412028f33f
1. rename BBC2003 as BBC2000;
...
2. add the real BBC2003 yield criterion, BBC2003 works;
3. now the BBC family yield criteria include: BBC2000, BBC2003, BBC2008
2015-04-03 20:59:23 +00:00
cd2a744db9
add Yld2000 yield criterion, Yld2000 works
2015-04-03 16:20:03 +00:00
2b9964bba5
add Barlat-Lian 1989 yield criterion, Barlat1989 works.
2015-04-03 12:31:13 +00:00
0097d39873
fix some type errors; add more comments
2015-04-02 19:32:48 +00:00
86f39de462
remove non-utf symbol
2015-04-02 16:13:00 +00:00
d8a99b23bf
1.compact all the criteria into a single Class;
...
2.the first thorough check of the script;
3.add the option of exponents for all non-quadratic yield criteria, now the user 1)can specify the exponent, for example, m=6 for Barlat 1991, or 2)see the exponent as an undetermined parameters;
4.add the pre-specified bounds for all criteria;
5.add the user defined equivalent stress for some anisotropic yield criteria
2015-04-02 12:08:55 +00:00
92a67e1a9d
geom_fromAng.py crashed when found empty line (eg. at the end of the file), now fixed
2015-04-01 14:42:25 +00:00
a1956436be
fixed bug introduced last time when searching for keywords in spectralOut header
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made reading in of header more robust by explicitly using the information given by fortran specifies the data length
introduced a legacy mode again, now it is used to read old spectralOut files prior to rev 4017
2015-04-01 10:02:21 +00:00
38943c1e94
improved help
2015-03-29 15:37:40 +00:00
913c5347a5
removed handling for old legacy format (we might introduce a new one)
2015-03-29 09:08:42 +00:00
66d4ff097f
removed obsolete comment
2015-03-28 11:44:17 +00:00
72c2ead277
polishing, replace variables calculation with arrays calculation.
2015-03-27 17:58:49 +00:00
8a30021202
cleaned up core modul
2015-03-27 14:10:18 +00:00
004375cc79
removed table rewind causing problem with STDIN/STDOUT
2015-03-27 13:57:34 +00:00
1ee81e74ea
more patches to get the tests running again:
...
- fixed increment counting in postResults to current output scheme
- corrected node coordinates calculation
- some work on restart (restart test still not running)
2015-03-26 21:19:28 +00:00
69b8e02a3a
removed unwanted ASCII table data rewind causing problem for STDIN
2015-03-26 21:15:59 +00:00
643f7fe934
some comments
2015-03-26 05:04:12 +00:00
fe4373a9f9
updated post processing script for MPI IO spectralOut file
2015-03-25 16:09:56 +00:00
1a3bfc7d1f
updated according to new convention for ip and nodes
2015-03-24 13:52:40 +00:00
226381586c
compact the code of Yld2004-18p and Karafillis-Boyce, use array instead of components to calculate the partial derivative.
2015-03-16 16:42:26 +00:00
12cb5e56fe
fixed interpretation 'spectralOut' header. Seem to have been buggy all the time, but manifested itself only after keyword change. Also added ':' after keywords to be more robust
2015-03-15 15:29:38 +00:00
df2ee87a7c
corrected help
2015-03-13 14:47:22 +00:00
c4f639dbfb
prevent crash in option parsing
2015-03-13 14:46:40 +00:00
a048b2ec15
1. Implement bbc2005 yield criterion (the residum and Jacobian); 2. bbc2005 works
2015-03-13 10:07:23 +00:00
56cf1b53eb
add Fourier interplation, anisotropic Vegter yield criterion is okay
2015-03-13 08:50:47 +00:00
4b19b74d11
number of intervals is limit/delta not limit/delta -1
2015-03-13 08:39:55 +00:00
def6d6b878
re-introduced determination of elem column
2015-03-12 06:20:40 +00:00
3f340ffac9
fixed bug for table data without labels in header
2015-03-11 20:39:14 +00:00
de29524189
add Vegter criteria, planar isotropy works
2015-03-11 17:42:46 +00:00
72efc7b30c
renamed resolution -> grid, dimension -> size
2015-03-11 08:55:48 +00:00
0dde6539ed
renamed from 1_ip to 1_ipinitialcoord
2015-03-11 07:22:11 +00:00
eb1561b528
changed postprocessing to use 1_ip instead of ip.x etc, plus corrected test files headers
2015-03-10 21:15:05 +00:00
a62fa5d5dd
rewrite class Loadcase
...
1. add 2 dimension random load case generator
2. add Vegter load case generator(typical stress points in 2D)
2015-03-09 21:57:22 +00:00
271c9eed8b
use 1_ip instead of ip.x
...
Old format still as fallback option to support legacy files
2015-03-09 12:52:43 +00:00
4d587b1bf9
introduced 'alias' for ip.x by first searching for 1_ip
2015-03-09 11:32:16 +00:00
96a3cb0667
added some ideas regarding the incorporation of the vegter yield criterion
2015-03-09 11:24:06 +00:00
639b030c65
shortened code for opening input file list
2015-03-06 17:04:44 +00:00
37e40fdf79
Keep consistent with the new file: example.linearODF
2015-03-06 16:21:05 +00:00
654aacf207
removed invalid options (options.packing, options.shift)
2015-03-05 21:41:53 +00:00
5d9abc16e8
the number of grains starts with one.
2015-03-05 20:16:17 +00:00
aeb468254d
missing file.close()
2015-03-05 19:12:07 +00:00
4579a696e8
use OptionParse to parse the command-line options, add help information,
...
add the output of material.config file.
2015-03-05 19:01:31 +00:00
d188f35c17
use OptionParse to parse the command-line options, add help information, format the header of output file, now the output file can be used by hydribIA_linODFsampling.py directly
2015-03-05 17:04:16 +00:00
f1df6cf40f
copied some stcopied some scripts from the Code folder that are of interest for DAMASK
2015-03-05 10:05:00 +00:00
8c91d174fa
remove some debugging print;
...
add meshgrid2, but stick with list comprehension since it is actually faster.
2015-03-02 16:20:47 +00:00
0077177c05
some polishing (numpy —> np, theTable —> table)
2015-03-02 05:06:29 +00:00
0d7355a49f
correct help information.
2015-02-27 23:08:48 +00:00
1742725963
interpolate microstructure using Delaunay triangulation and Barycentric interpolation.
2015-02-27 22:59:09 +00:00
9203b37fbc
1. Implement Hill1979 yield criterion (the residum and Jacobian);
...
2. Hill1979 works
2015-02-25 17:24:33 +00:00
8b1846e78e
1. Implement Karafillis-Boyce yield criterion (the residum and Jacobian);
...
2. Karafillis-Boyce works
2015-02-24 16:46:09 +00:00
39e17fc95a
1. add __init__() for the "Class" of each Criterion;
...
2. Polishing
2015-02-20 20:51:23 +00:00
a3e5da0bfd
1. Implement 2D and 3D Cazacu-Barlat yield criteria(the residum and Jacobian);
...
2. Both work
2015-02-20 20:34:47 +00:00
09c357c70f
1. Fix bug of Yld2004-18p;
...
2. get deformation rate tensor and Lankford coefficient.
2015-02-20 14:40:24 +00:00
425251ae2b
fixed bug: theTable -> table
2015-02-14 11:23:50 +00:00
4a63aff1ed
1. Implement Yld2004-18p yield criterion(the residum and Jacobian);
...
2. Yld2004-18p yield criterion takes effect
2015-02-13 17:22:19 +00:00
77cffd8040
1. fix up Banabic-Balan-Comsa 2003 (BBC2003) yield criterion;
...
2. add the calculation Jacobian of BBC2003;
3. Now BBC2003 yield criterion takes effect
2015-02-12 20:48:03 +00:00
69af205721
add the calculation of Jacobian of isotropic and anisotropic Barlat1991, shows better performance.
2015-02-12 11:04:00 +00:00
40f1f3af23
add the calculation of Jacobian of Hill1948 and Drucker family criteria.
2015-02-11 19:06:23 +00:00
53b40662ec
now with executable, correct line endings, and ID tags.
2015-02-11 17:26:56 +00:00
d5f9f543ca
Script to generate PNG image from given column (or 2D data in overall ASCIItable) with custom colormap and pixel sizes.
...
Supersedes “imageFromData” from “Code” repository.
2015-02-11 17:25:49 +00:00
9eae665365
fixed ‘too many files open’ issue when processing a large list of input tables.
2015-02-11 17:22:47 +00:00
eed00007f9
Re-write the script:
...
1. replace curve_fit with leastsq, which supports the analytical Jacobian
2. specify a "class" (contains both residum and jacobian) for each criterion.
3. add the calculation of Jacobian
2015-02-11 16:49:40 +00:00
1b1ed3bbcf
removed unnecessary lines
2015-02-11 06:18:08 +00:00
40a792d785
fixed bug in consistency check
2015-02-10 13:49:47 +00:00
63434c2ddb
corrected error checking for correct type
2015-02-09 08:57:14 +00:00
7edd209ce4
corrected wrong name in add..., more verbose error checking for geom_from...
2015-02-07 22:22:28 +00:00
6140285ddd
small changes (use ip.x instead of 1_ip). Probably we should modify postResults to use the 1_, 2_, 3_, standard notation for ip as well
2015-02-07 18:13:51 +00:00
e4a94aa72b
put changes on algorithm from geom_fromEuclideanDistance into addEuclideanDistance
2015-02-07 17:11:46 +00:00
f3bab46275
addthe Cazacu–Barlat (CZ) yield criterion (3D and 2D), Banabic–Balan–Comsa (BBC) Yield Criterion.
2015-02-07 16:58:57 +00:00
cdb7795956
1. Add default boundary constraint(no constraint) and initial guess to the dictionary
...
2. With the boundary constraint of exponential term, now non-quadratic yield criteria (isotropic Barlat 1991, anisotropic Barlar 1991, Hosford) take effect.
2015-02-07 11:07:45 +00:00
0350b1829c
1. Replace curve_fit(see minpack.py) with curve_fit_bound(see damask/util.py), now the boundary constraint can be applied.
...
2. Transfer the output information into dictionary 'fittingCriteria', compact subroutine 'fit'.
2015-02-06 14:01:04 +00:00
ce09e992cc
1. Change yieldStress from 'list' to 'numpy.arrary', thanks to Martin's suggestion (3907);
...
2. Change '3*3' Cauchy stress tensor to '1*6', now the number of input 'xdata' for fitting is 6*Points, which is less than the former 9*Points.
2015-02-06 13:48:14 +00:00
0b3205a24b
some suggestions how to simplify
2015-02-06 09:29:21 +00:00
4f2c07063b
Fix general Hosford!
2015-02-05 20:18:07 +00:00
2b704b3905
Fix: Tresca, von Mises, Drucker, Hill 1948 criteria.
2015-02-04 16:47:35 +00:00
2d568b49f2
add the output of standard deviation errors;
...
fix Hill 48 and anisotropic Barlat 1991
2015-02-04 13:04:34 +00:00
3845c47e61
complement of 3897: add isotropic and anisotropic Barlat 1991 to the dictionary
2015-02-03 12:57:18 +00:00
bef846d294
add isotropic and anisotropic Barlat1991 yield criteria.
2015-02-03 12:54:16 +00:00
55445af9bc
1. add initial guess and weight to the fitting (nonlinear least square regression);
...
2. extend the dictionary:fittingCriteria
2015-02-03 12:18:53 +00:00
cc6138ec41
rewrite "def fit()";
...
add format output.
2015-02-02 17:41:19 +00:00
fd75772a3f
Fix the bug of calculating principal stresses. Now the fitting result is better for the criteria which expressed in principal stresses.
...
Thanks to Martin.
2015-02-02 16:52:28 +00:00
4772efbc45
fixed syntax error
2015-01-23 10:11:12 +00:00
2c9c04eb76
added script to replace all rows of an ASCII table by a single row containing their average
2015-01-23 00:57:10 +00:00
5be9a75cff
fixed indentation
2015-01-22 09:04:01 +00:00
440263f2f0
simplified, removed deprecated synonyms
2015-01-22 09:03:18 +00:00
ed6b4fe50a
fixed issues when having grains and eulers
2015-01-13 16:04:49 +00:00
c08f704dee
added Id + a little help
2015-01-07 19:29:27 +00:00
ca58216134
added missing math module import
2015-01-05 12:25:03 +00:00
3e3c13bf0b
added missing math module import
2015-01-04 21:02:17 +00:00
8dea16c07f
fixed wrong assignment of phase and made orientation comparison robust
2014-12-20 12:42:21 +00:00
5e8fff13d9
worked on the vtk binary out, still some problems with multicomponent datatypes
2014-12-18 21:46:38 +00:00
6604d0f8e8
polishing
2014-12-18 19:26:52 +00:00
9ac62e42df
added possibility to specify number of bins to be sorted in advance to current cleared stage
2014-12-18 18:03:36 +00:00
89f8ba979e
Add x,y coordinates of stereographic projection of given direction (pole) in crystal frame.
2014-12-13 00:12:55 +00:00
Martin Diehl