Martin Diehl
e2b13a5ca3
using de-facto standard naming
2019-11-29 19:32:18 +01:00
Martin Diehl
9b4252da68
smart handling of leading zeros
2019-11-29 16:58:11 +01:00
Martin Diehl
3e65d44e07
centralized facilities for differential operations
...
note the need to reverse the grid shape in data from the ASCII table. If x is fastest,
z is slowest we require x to be the rightmost index
2019-11-28 15:46:22 +01:00
Martin Diehl
4c4ccfe72e
not needed
2019-11-28 06:27:19 +01:00
Martin Diehl
a8016d64bb
simplified
2019-11-27 12:31:32 +01:00
Martin Diehl
cee095b58e
better use centralized code
2019-11-27 12:22:28 +01:00
Martin Diehl
7d4b982c73
make information on modifications mandatory
2019-11-27 12:08:23 +01:00
Martin Diehl
9ad74745c1
missing import detected by prospector
2019-11-27 08:48:41 +01:00
Martin Diehl
ab83dc2ebc
use central facilities
2019-11-27 08:45:01 +01:00
Martin Diehl
eb033e11b2
polishing
2019-11-27 08:44:38 +01:00
Martin Diehl
31d3958ca6
using fast new Table class
...
more a proof-of-concept since shell scripts are deprecated. The detailed
error handling of the former scripts is not implemented, i.e. the user
need to ensure that the files exist and the data has the correct shape
2019-11-26 22:59:42 +01:00
Martin Diehl
2d96136a0d
more general constructor for Table
...
reading from file is just one case (now handled by static method).
General constructor needs data and header information as dictionary.
Works only with python 3.7 where dict keeps the insertion order. Earlier
python versions/other implementations might fail.
2019-11-26 22:53:46 +01:00
Martin Diehl
845cfc34ec
similar logic as in geom class
...
- filename is not part of the object
- transparent handling of files, strings, and path-like objects for file
IO
2019-11-26 14:26:25 +01:00
Martin Diehl
81abc43920
Merge branch 'development' into new-ASCII
2019-11-26 10:29:05 +01:00
Martin Diehl
faeb5a98b4
Merge branch 'PythonImprovements' into no-crystallite
2019-11-25 21:41:38 +01:00
Martin Diehl
592878d364
need to invoke function
2019-11-25 17:29:13 +01:00
Martin Diehl
406ca39b2c
ASCII table unable to handle inhomogeneous situations
2019-11-24 21:23:43 +01:00
Martin Diehl
3e8518d861
following prospector guidelines
2019-11-24 19:30:00 +01:00
Martin Diehl
c9f9f7c681
pack causes trouble with tests ..
2019-11-24 19:02:19 +01:00
Martin Diehl
b2cdabd009
getting rid of shell scripts
2019-11-24 18:25:53 +01:00
Martin Diehl
816e86ae5f
phasing out python shell scripts
2019-11-24 15:13:26 +01:00
Martin Diehl
8186be6293
compress functionality should be part of the geom class
...
automated decision is base on heuristic whether compression is memory
efficient
2019-11-24 14:27:24 +01:00
Martin Diehl
6060abb375
cleaning
2019-11-24 09:10:47 +01:00
Martin Diehl
c9b1944493
handling of derived datatypes/structs
...
currently required for orientation
2019-11-24 08:50:27 +01:00
Martin Diehl
dfb95df689
migrating shell scripts to python class
2019-11-22 21:48:41 +01:00
Martin Diehl
fb286af354
[skip sc] first draft
2019-10-31 10:47:40 +01:00
Martin Diehl
a2e4917d3b
not needed for DADF5
2019-10-20 19:25:09 +02:00
Martin Diehl
da79949c2a
old python2 script, not needed for DADF5
2019-10-19 23:14:17 +02:00
Martin Diehl
f4a0a5cfe5
substitute error introduced when enabling MSC.Marc
2019-10-18 22:03:31 +02:00
Martin Diehl
bd7b5ad27b
old python2.7 scripts with only a loose connection to DAMASK
...
if needed, simply take them from an old release version
2019-10-18 21:46:44 +02:00
Martin Diehl
b70ad9ff54
Merge branch 'development' into DADF5-improvements
2019-10-18 20:54:54 +02:00
Philip Eisenlohr
f8ffd7e39c
added specifics to resulting column label (sum or prod)
2019-10-18 09:30:43 -04:00
Martin Diehl
edcb8f9c4d
name change in development
2019-10-18 12:55:15 +02:00
Martin Diehl
de912c22b4
Merge branch 'development' into HDF5-spectral-displacements
2019-10-18 12:54:12 +02:00
Martin Diehl
76236a4a0c
direct initialization (float64 is anyway standard)
2019-10-17 22:41:18 +02:00
Philip Eisenlohr
03a3edc128
added option to multiply values instead of summing them
2019-10-17 13:23:14 -04:00
Franz Roters
91691744c6
Merge branch 'Marc-No-nonlocal' into 'development'
...
Marc no nonlocal
See merge request damask/DAMASK!98
2019-10-15 10:35:37 +02:00
Martin Diehl
d73e653f50
support for unstructured grid (FEM)
2019-10-14 14:13:03 +02:00
Martin Diehl
708bbd3cb9
mesh/grid type transparent handling of coordinates
2019-10-12 16:15:04 +02:00
Martin Diehl
513f1c6726
write out point data
...
might be possible to use a rectilinear grid for this also in the case of
grid solvers
2019-10-12 12:34:37 +02:00
Martin Diehl
b208fa6565
takeover from Vitesh's work with small adoptions to current DADF5
2019-10-12 08:02:57 +02:00
Martin Diehl
3206ee04bc
nodal displacements for grid solver
...
currently for non-MPI only
2019-09-27 20:38:02 -07:00
Martin Diehl
8793050329
fixed handling of subfolders
...
now inline with post results.
Still a little bit unclear what happens if an absolute directory is
given. Probably best to either specify absolute or relative with respect
to working directory
2019-09-19 16:10:07 -07:00
Martin Diehl
4cedcee0b4
handling of increments follows handling of other 'visible'-items
2019-09-15 17:08:03 -07:00
Martin Diehl
f6ac8c995f
simplified and selected better names
2019-09-15 16:00:19 -07:00
Martin Diehl
04aefa84bc
more appropriate names
2019-09-15 15:02:16 -07:00
Martin Diehl
de316f1afe
Merge remote-tracking branch 'origin/development' into even-more-HDF5-postprocessing
2019-09-14 12:48:42 -07:00
Martin Diehl
b85ac11c49
implemented ideas from discussion with Philip
...
group matching unified and with wildcard support
time step handling should become more convenient (WIP)
add_norm can not compute abs of scalar, added function for that
general polishing here and there
2019-09-14 09:07:23 -07:00
Martin Diehl
c13db4b3ca
renaming
...
on_air/active are not clear. visible seems to be the most appropriate
name
2019-09-13 21:49:22 -07:00
Martin Diehl
a6567e0cc6
safer to use functions
...
don't mess with attributes of the object, they might be renamed
2019-09-13 21:41:35 -07:00
Martin Diehl
002383afc2
solved problem with postprocessing
...
- to not 'try' with h5py library, it might have another 'try'. Check
explicitly for empty argument
also some polishing
2019-09-13 16:01:30 -07:00
Martin Diehl
52904a81dc
taking prospector complaints serious
2019-09-13 06:49:25 -07:00
Martin Diehl
a3c6f6682e
using eigh should ensure orthogonal eigenvectors
2019-09-13 06:42:01 -07:00
Martin Diehl
890a6cf42f
avoid floating point comparison and simply play it safe
2019-09-13 06:40:41 -07:00
Martin Diehl
0497b58629
use existing functionality
2019-09-13 06:38:22 -07:00
Martin Diehl
cd6a4d1cfd
that's all we need
2019-09-13 06:37:47 -07:00
Martin Diehl
66d8a3e601
stretch is symmetric (play it safe here)
2019-09-13 06:35:48 -07:00
Martin Diehl
79d2432c6c
R not needed
2019-09-13 06:33:00 -07:00
Martin Diehl
49b3cd2145
transpose evuivalent for rot but faster
2019-09-13 06:32:05 -07:00
Martin Diehl
462bb07efd
Merge branch 'development' into even-more-HDF5-postprocessing
2019-09-11 16:29:44 -07:00
Philip Eisenlohr
926217fcb6
added possibility to reduce rotation to specific fundamental zone, and to output 3-dim Rodrigues vector
2019-09-10 15:09:27 -04:00
Martin Diehl
d446248d75
also ouptut materialpoint results if requested
2019-07-15 17:07:04 -07:00
Martin Diehl
b6bb8a4650
simple strain calculation for DADF5
...
further enhancement requires to give optional arguments to
add_genericpontwise
2019-07-06 21:41:29 -07:00
Martin Diehl
a8ed982706
[skip ci] better name
2019-06-15 07:31:30 +02:00
Martin Diehl
eb8be13203
missing import
2019-06-14 17:27:00 +02:00
Martin Diehl
1cf9c59850
standardizing
...
import follows PEP style guide, encoding not needed for python3
2019-06-14 13:03:30 +02:00
Martin Diehl
4ff3efb1a5
to 'stack' tables
2019-06-13 23:14:40 +02:00
Philip Eisenlohr
bffeaa980d
restored Martin's logic, not clear why seemed to be broken with PE's former tests...
2019-06-03 14:43:23 -04:00
Philip Eisenlohr
8d52a3d52a
polishing of geom_rescale; adopted modified testing reference
2019-06-03 14:15:23 -04:00
Philip Eisenlohr
2870fdb25b
fixed buggy version
2019-06-03 13:39:45 -04:00
Philip Eisenlohr
89e4bc800c
removed default size to adjust to changes in geom-class
2019-06-03 13:38:48 -04:00
Philip Eisenlohr
60031cc806
changed periodic option to reflect to better reflect what happens
2019-06-03 13:35:37 -04:00
Philip Eisenlohr
7ea417d585
rotated geometry maintains center of gravity
2019-06-03 13:30:14 -04:00
Martin Diehl
615ff4ed06
[skip ci] vectorized
2019-05-31 23:26:32 +02:00
Martin Diehl
bf27505faa
Merge branch 'development' into geometry-class
2019-05-31 16:21:50 +02:00
Martin Diehl
02671c5c03
bugfix
...
shoud now work for any possible combination of new and old grid and
offset
2019-05-31 15:58:47 +02:00
Martin Diehl
979145f023
vectorized
2019-05-31 10:27:26 +02:00
Martin Diehl
46f0ad052e
direct support for vtk output
...
- geom_check can now handle multiple files
- microstructure index is stored as integer in vtk file
2019-05-30 15:35:45 +02:00
Martin Diehl
08052737cf
if grid is an option, it is a tuple
...
tuples do not have the prod() function
2019-05-30 14:28:31 +02:00
Martin Diehl
c2a5f37818
round to reasonable precision
...
without symmetry, there are 36000**3 = 46656000000000 orientations
2019-05-30 14:11:54 +02:00
Martin Diehl
bf60cffab5
cleaning
2019-05-30 14:07:49 +02:00
Martin Diehl
d0c7f8b934
texture is typically the more interesting information
...
therefore, but it to the top
2019-05-30 14:05:45 +02:00
Martin Diehl
8380071564
using geom class
...
- dropped the use of the material class as it does not allow to have
empty phase and crystallite. The material.config class needs a severe
refurbishing (no crystallite, use orderedDict instead of hand written
solution, drop of texture components). Probably best solution is to
postpone this until we have a yaml/json reader for Fortran.
2019-05-30 13:30:38 +02:00
Martin Diehl
7d07a3752f
polishing
2019-05-30 13:30:18 +02:00
Martin Diehl
461611cde7
polishing
2019-05-30 11:26:47 +02:00
Martin Diehl
49c3903cc7
explicit loop for simpler code
...
- no invalid combintations any more (allow to move the original
microstructure out of the new canvas)
- handling of origin needs discussion. When we want to recover the old
behavior, the origin might be located outside of the new geometry
2019-05-30 11:26:07 +02:00
Martin Diehl
e974bb9c43
similar structure for building blocks
2019-05-30 10:45:17 +02:00
Martin Diehl
510b55df50
several improvements
...
- more error checking
- order of points can be arbitrary also for microstructure input
- grouping of same orientation/phase combinations
2019-05-30 10:33:01 +02:00
Martin Diehl
931fa9d36a
standardized and cleaned
...
-write to file if given
-type casting is done in the geom class
2019-05-30 10:20:07 +02:00
Martin Diehl
07276d511c
modern python formatting
...
- 2 digits should be precise enough for euler angles
- no need to pad grain ID with leading zeros
2019-05-30 10:03:55 +02:00
Martin Diehl
73df615ff3
numpy meshgrid can do this now
2019-05-30 09:45:30 +02:00
Martin Diehl
4e0e5a2329
new python formatting style
2019-05-30 09:41:22 +02:00
Martin Diehl
f30eda0267
no need to loop over files
...
will procude the same file over and over again
2019-05-30 09:32:37 +02:00
Philip Eisenlohr
cdc8338347
full (not periodic) mirroring is geom_mirror default behavior
2019-05-29 20:22:29 -06:00
Philip Eisenlohr
d79f0c6290
replace geom_canvas --blank with geom_fromScratch
2019-05-29 20:02:06 -06:00
Martin Diehl
fd9801ba09
StringIO not needed
2019-05-29 19:44:38 +02:00
Martin Diehl
d7e8a66746
polishing
2019-05-29 14:18:11 +02:00
Martin Diehl
16bd5294aa
loop order as intented
2019-05-29 14:06:39 +02:00
Martin Diehl
78f30684f8
moderized
...
needs some polishing with respect to array orders
2019-05-29 09:40:56 +02:00
Martin Diehl
6836a2eae8
better readable
2019-05-29 08:04:01 +02:00
Martin Diehl
dfc2b47abc
better readable
2019-05-29 08:01:00 +02:00
Martin Diehl
8ee23b37b2
should not be part of the repo
2019-05-29 07:52:44 +02:00
Martin Diehl
bb6f54963a
save some memory (avoid copies if not needed)
2019-05-29 07:49:43 +02:00
Martin Diehl
9f68923038
restored old behavior
...
save some ressources by avoiding copies.
much slower than old version, better cast formula into meshgrid again
2019-05-29 07:38:11 +02:00
Martin Diehl
2eb964b1ea
simplified
...
needs some manual checking and proper test
2019-05-28 23:49:11 +02:00
Martin Diehl
100a2031d3
[skip ci] no white space needed
2019-05-28 07:55:24 +02:00
Philip Eisenlohr
1f56ac6a4a
streamlining and bugfixing of geom-class
2019-05-27 22:45:34 -06:00
Martin Diehl
b69f0efbbc
improved and simplified reporting
2019-05-27 22:00:26 +02:00
Vitesh Shah
5abcca50ee
Merge branch 'more-HDF5-postprocessing-cleaned' into development
2019-05-27 12:17:12 +02:00
Martin Diehl
59c6c5cfe4
not needed anymore
...
essentially, (gauss) is an Euler angle triplet
2019-05-27 10:49:50 +02:00
Martin Diehl
6e06764e2d
using (enhanced) central functionality
2019-05-27 08:38:02 +02:00
Martin Diehl
d9ab87cfde
crystallite will be removed soon, error handling is done by geom class
2019-05-27 08:35:24 +02:00
Martin Diehl
5cf63bbbc3
vtk 7 is out for more than 3 years
2019-05-27 08:34:36 +02:00
Martin Diehl
b5cec797c0
cleaned
2019-05-26 23:03:31 +02:00
Martin Diehl
c8dfba89e5
using class
...
still a very complex script
2019-05-26 22:49:05 +02:00
Martin Diehl
15d5a7ae28
don't access attributes directly
2019-05-26 22:08:14 +02:00
Martin Diehl
f251cdb746
simplified
2019-05-26 22:07:50 +02:00
Martin Diehl
af493cf9fd
using class
...
needs more memory, but should be faster and is better readable
2019-05-26 21:32:08 +02:00
Martin Diehl
99da46fda8
polished
2019-05-26 20:36:41 +02:00
Martin Diehl
657a30c2f5
using new functionality
2019-05-26 18:51:27 +02:00
Martin Diehl
feb2340935
self-reporting functionality for updating
2019-05-26 17:58:54 +02:00
Martin Diehl
34f7bbe2a0
'blank' option does not fit to flow of script
...
seeds_fromRandom -N 1 | geom_fromVoronoiTessellation -g 30 30 30 -s 1 1 1 > file.geom
or a few lines of python code give the same results
2019-05-26 13:06:22 +02:00
Martin Diehl
e7b8ae08d0
polishing
2019-05-26 12:14:48 +02:00
Martin Diehl
974f67ffdc
no frills
2019-05-26 12:06:51 +02:00
Martin Diehl
be3513d1e0
polishing.
...
python imports follow PEP8
2019-05-26 09:49:56 +02:00
Martin Diehl
a242382bed
Merge branch 'geometry-class' of magit1.mpie.de:/damask/DAMASK into geometry-class
2019-05-26 09:19:29 +02:00
Philip Eisenlohr
b13aa799c3
updated error message
2019-05-25 17:00:41 +02:00
Martin Diehl
c89d344236
polishing
2019-05-25 13:51:05 +02:00
Martin Diehl
2b7d95f800
was accidently commited
...
gives different results due to interpolation from scipy
2019-05-25 12:09:09 +02:00
Martin Diehl
c92969787a
geom Class was updated
2019-05-25 11:56:06 +02:00
Martin Diehl
94f85b7f33
better readable
2019-05-25 10:45:58 +02:00
Martin Diehl
fc1f65c34e
works for dtype='float'
2019-05-25 10:36:46 +02:00
Martin Diehl
875643c363
same style
2019-05-25 10:24:45 +02:00
Martin Diehl
17eb0d1b20
using new class
2019-05-25 08:48:44 +02:00
Martin Diehl
4788fc6046
making use of new class
...
@philip: 1D arrangement needed?
2019-05-25 08:37:02 +02:00
Martin Diehl
6c7f7c77da
specifying non-existing or invalid files is an user error
...
this is the standard behavior for common unix tools, no need to make an
exception here
2019-05-25 08:24:32 +02:00
Martin Diehl
cf374a04dc
using new class
2019-05-25 08:21:00 +02:00
Martin Diehl
420abfa162
use new class
2019-05-24 22:34:27 +02:00
Philip Eisenlohr
eb13fbc0ce
streamlined geom-info reporting; added --float option to some scripts; hardened against NaN; "microstructures" now reports uniques not max
2019-05-23 13:03:24 -04:00
Philip Eisenlohr
e6cec6ecbe
added option to reverse inside/outside of primitive body
2019-05-23 12:49:03 -04:00
Martin Diehl
339b86f784
bugfix + more verbose reporting
2019-05-16 11:44:03 +02:00
Martin Diehl
9f7fa5393a
fix for scalar datasets
2019-05-16 09:31:13 +02:00
Martin Diehl
4599d1c34e
does not match
...
node does not make sense, is weirdly numbered
2019-05-16 00:42:22 +02:00
Martin Diehl
3c0c0a2cd1
more flexible in selecting data
2019-05-16 00:27:06 +02:00
Franz Roters
998789528c
Merge branch 'HDF5-out-homog-2' into 'development'
...
Hdf5 out homog 2
See merge request damask/DAMASK!78
2019-05-13 17:34:59 +02:00
Vitesh Shah
feb1465803
Better to have actual increment num in output file
2019-05-08 17:31:18 +02:00
Martin Diehl
0cc2b1214d
store requested data in ASCII file
2019-05-07 15:18:12 +02:00
Martin Diehl
1eaf67ad82
store results in subdirectory
...
defaults to postProc
2019-05-07 13:30:05 +02:00
Martin Diehl
f65423fe9f
rudimentary postResults for HDF5 output
...
only meant for compatibility during transition
2019-05-05 10:09:23 +02:00
Martin Diehl
8a9baf6d78
preparing output of mech_homog to HDF5
2019-04-30 18:45:38 +02:00
Philip Eisenlohr
d74599d39a
Merge branch 'HDF5-postprocessing' into 'development'
...
Hdf5 postprocessing
See merge request damask/DAMASK!72
2019-04-29 23:24:42 +02:00
Martin Diehl
6b7fd6b7ea
visualizing data from DADF5: first prototype
2019-04-18 11:58:17 +02:00
Martin Diehl
7177813710
adding data to geometry
2019-04-17 19:57:16 +02:00
Martin Diehl
8eb1a35dfb
first version of a library to parse HDF5
...
- preliminarly called DADF5 (DAMASK HDF5)
- script to write (empty undeformed) geometries is also added
2019-04-13 11:25:53 +02:00
Martin Diehl
0c6fde97f9
wrong positions for point visualization
...
- now the cell centers are at the centers of the cells for cell
visualization
2019-04-13 00:42:05 +02:00
Martin Diehl
ed7423a3d6
bug fixes
2019-03-10 08:16:01 +01:00
Martin Diehl
67619fa92a
consistent definition of axis angle
2019-03-09 20:18:28 +01:00
Martin Diehl
433281f71d
following Rowenhorst convention
2019-03-09 19:58:17 +01:00
Martin Diehl
0d08659b2a
general cleaning
2019-03-09 11:11:40 +01:00
Martin Diehl
60feb96afd
let vtk decide on the file extension
2019-03-09 11:11:40 +01:00
Martin Diehl
5ab8e50d09
consistent with reference paper
2019-03-08 19:07:19 +01:00
Martin Diehl
b84d4f1b6a
improved error handling/clearer messages
2019-03-05 10:58:57 +01:00
Philip Eisenlohr
e030038b73
[skip ci] added --blank option to create fresh canvas (from nothing)
2019-02-27 19:37:38 -05:00
Philip Eisenlohr
c706ca5ba3
no progress bars in quite mode
2019-02-26 21:22:49 -05:00
Eureka Pai
f3d2803443
addMises failed for single run of either --stress or --strain
2019-02-25 19:29:12 -05:00
Eureka Pai
2089726800
corrected output extension of vtk files to reflect binary format
2019-02-25 18:48:40 -05:00
Eureka Pai
e401c21266
dropped obsolete option --inplace from geom_check
2019-02-25 18:30:45 -05:00
Martin Diehl
e88182b007
improved converte, now with test
...
still needs to figure out how +P is handled
2019-02-24 14:39:34 +01:00
Martin Diehl
0d7fd587e3
direct translation from DREAM.3D to DAMASK geom
...
needs test
2019-02-24 12:59:10 +01:00
Martin Diehl
95be7ef938
directly convert to geom file + material config
2019-02-24 10:33:30 +01:00
Martin Diehl
903edcd429
do not patronize the user, rather give hints
2019-02-24 10:31:08 +01:00
Martin Diehl
d3ac3cc0f5
using new Orientation class
2019-02-24 08:34:20 +01:00
Martin Diehl
9dc8dff4b1
cleaning and adding compatibility layer
2019-02-23 22:35:04 +01:00
Martin Diehl
9fa2553af4
task for DREAM.3D if needed
...
pointwise takeover should not be a problem anymore as reading in takes
no time (at least in comparison to addGrainID)
2019-02-23 22:14:55 +01:00
Martin Diehl
a8e8b75cc0
use new rotation class
2019-02-23 22:13:24 +01:00
Martin Diehl
fff377de7f
initial simplification.
...
Should be able to generate from table containing either <microstructure>
or <texture> and <phase>
2019-02-23 22:06:31 +01:00
Martin Diehl
b3455c825e
transition to new orientation class
...
forward-backward conversion quite stable
2019-02-23 21:49:05 +01:00
Martin Diehl
e4bb61c9d9
transition to new orientation class/DREAM.3D
2019-02-23 11:37:09 +01:00
Martin Diehl
93ae5cbd07
Merge remote-tracking branch 'origin/development' into 10-consistent-orientation-conversions-3
2019-02-22 23:05:36 +01:00
Satyapriya Gupta
3bec76e781
can now deal with 1x1x1 geoms
2019-02-19 12:06:46 -05:00
Martin Diehl
25727bfa52
using CamelCase
2019-02-19 10:32:18 +01:00
Martin Diehl
43a451b2e1
inplace not useful
...
use shell script if you want to keep an backup of your old data
2019-02-18 14:36:04 +01:00
Martin Diehl
27ebe1f665
improved documentation
2019-02-17 08:17:40 +01:00
Martin Diehl
5c20609e81
more verbose help, drop support for really old vtk
2019-02-16 22:20:44 +01:00
Martin Diehl
802ef6fe5c
more precise help
2019-02-16 18:25:41 +01:00
Martin Diehl
c6781e415a
using default notation for vector access
2019-02-16 18:23:00 +01:00
Martin Diehl
0b1bfdfd4e
was only working with python2
2019-02-16 18:17:05 +01:00
Martin Diehl
29fc53fdcb
more specific about invocation
2019-02-16 17:41:56 +01:00
Martin Diehl
fa003e8077
small adjustments for autodoc
2019-02-16 15:26:21 +01:00
Martin Diehl
4ce151c967
camel casing (easer for foswiki)
2019-02-15 23:22:51 +01:00
Martin Diehl
0cc4e582e4
Merge branch 'development' into 26_autodoc-2
2019-02-15 20:47:14 +01:00
Martin Diehl
566099ad81
automatic documentation for some post processing scripts
2019-02-15 18:52:47 +01:00
Philip Eisenlohr
dc133344b6
[skip ci] migrated to python3 compatibility
2019-02-14 18:44:06 -05:00
Philip Eisenlohr
d58c3008ae
fixed too long line in addLinked
2019-02-14 18:31:22 -05:00
Philip Eisenlohr
742d58cfce
added ASCIItable tests to CI pipelining
2019-02-14 18:24:09 -05:00
Martin Diehl
c4cb35891c
all fine with python3
2019-02-14 22:56:39 +01:00
Martin Diehl
889cfc8ba0
vtk script only work with python3 on new testing
2019-02-14 01:39:54 +01:00
Martin Diehl
217024667b
forgotten comma
2019-02-12 11:30:43 +01:00
Martin Diehl
608852df83
rotation paper has angle as last component
2019-02-12 10:58:38 +01:00
Martin Diehl
7da8980cc0
bugfixes: wrong shape, wrong conversion
2019-02-12 09:04:35 +01:00
Martin Diehl
336a80091f
rodrigues is 4-vector with rotation being the last component
...
established a single source of truth for length
2019-02-12 08:59:26 +01:00
Martin Diehl
97ac437686
more user friendly constructors
2019-02-12 08:14:27 +01:00
Martin Diehl
ef3fc0b58a
bugfix: wrong array indexing
...
rotation of meshgrid tuple implemented
2019-02-12 07:42:46 +01:00
Martin Diehl
48b0307fab
using new rotation class
...
cannot rotate matrices (3,3) and (3,3,3,3) at the moment
2019-02-12 00:27:13 +01:00
Philip Eisenlohr
74956c0290
avoid error for empty "name"
2019-01-23 20:59:07 -05:00
Martin Diehl
da115ca9d4
probably never used and outdated (python2.7)
...
doing the same conversion via DREAM.3D will be available soon
2019-01-16 17:51:37 +01:00
Martin Diehl
c5dabbb68f
correct comment sign
...
the # indicates the end of a list
2019-01-09 16:31:00 +01:00
Martin Diehl
0dca8d2740
compatible to python 3 and mentat >= 2017
2019-01-09 16:28:21 +01:00
Martin Diehl
1192f16582
Merge remote-tracking branch 'origin/development' into 56-parallel-hdf5
2019-01-06 20:56:36 +01:00
Martin Diehl
7768c5874b
simpler interface for progress bar
2019-01-05 10:41:49 +01:00
Martin Diehl
c00d00c219
Merge remote-tracking branch 'origin/development' into misc-improvements
2019-01-05 09:22:41 +01:00
Philip Eisenlohr
3c5df0a4a4
[skip ci] viewTable acknowledges requested output type(s)
2019-01-04 16:34:21 -05:00
Philip Eisenlohr
bcd4288f1e
[skip ci] groupTable according to unique values in more than one column
2019-01-03 18:25:28 -05:00
Philip Eisenlohr
b5d62c8e29
[skip ci] print estimated remaining processing time for postResults
2019-01-03 11:31:04 -05:00
Martin Diehl
835e3f95a5
[skip ci] was not used
2018-12-31 08:05:56 +01:00
Martin Diehl
6f40989465
order was randomized when creating dict
2018-12-31 07:18:45 +01:00
Martin Diehl
a992b8b1f5
random order caused test to fail
...
rather a workaround, but since HDF5 is coming...
2018-12-30 11:41:22 +01:00
Philip Eisenlohr
9bdd4d1d68
added <!skip> line to stop config parser from trying to interpret rest of geom description---huge speedup!!
2018-12-20 17:22:29 -05:00
Philip Eisenlohr
25a80723c0
numpy interface changed to be strict about 2D array shape in histogram
2018-12-20 17:14:55 -05:00
Martin Diehl
1ef82e351b
Merge branch 'orientationClass_with_negative_P' into development
2018-12-20 20:43:00 +01:00
Philip Eisenlohr
7df6dfbf3f
renamed "showTable" to "viewTable" to avoid clashing with astropy.table module
2018-12-18 15:10:26 -05:00
Martin Diehl
5d7f930592
math.isclose does not exist for older versions
...
np.isclose does the same
2018-12-17 20:04:16 +01:00
Martin Diehl
3bab08fdeb
Merge branch 'development' into 56-parallel-hdf5
2018-12-12 07:46:02 +01:00
Martin Diehl
1f2fbbee21
consistent name
2018-12-10 09:38:57 +01:00
Martin Diehl
767650e002
more general option + improved descriptions
...
hopefully more user friendly
2018-12-10 09:27:39 +01:00
Martin Diehl
d219842ad8
[skip ci] consistent tolerances
2018-12-09 20:19:33 +01:00
Martin Diehl
60686fb72c
[skip ci] improved reporting
2018-12-09 18:05:37 +01:00
Martin Diehl
bc04b83d8a
no reason for using python2.7
2018-12-09 14:09:26 +01:00
Martin Diehl
08ac49fac0
line too long
2018-12-09 13:21:56 +01:00
Martin Diehl
130fac21c6
cleaning
2018-12-09 13:15:59 +01:00
Martin Diehl
d43dfa569b
lines too long
2018-12-09 12:37:27 +01:00
Martin Diehl
65165ffc5e
assumed wrong type
...
quaternion should have lenght one
2018-12-09 12:35:32 +01:00
Martin Diehl
697d97cd38
cleaned
...
legacy format was for pre-MPI output where the extra bytes at start and
end of a chunk (Fortran out) had to be handled manually
2018-12-09 12:30:07 +01:00
Martin Diehl
5054291557
python3 compatible status message
2018-12-09 12:25:31 +01:00
Martin Diehl
741032339e
time/math/datatype are not used/defined any more
2018-12-09 11:05:35 +01:00
Martin Diehl
aefa006d09
simplified
...
assume quaternions as input
2018-12-09 10:53:53 +01:00
Martin Diehl
213e31ff87
string was split into letters
2018-12-09 10:53:25 +01:00
Martin Diehl
d9b47f09bc
modernized
...
split arguments logically, assume 3-vector for coordinates
2018-12-09 10:52:37 +01:00
Martin Diehl
7eaea64d09
python3 compatible
...
hope that the new bar causes less trouble than the background message
2018-12-09 09:08:33 +01:00
Martin Diehl
6b73840853
works with python3
2018-12-09 08:07:40 +01:00
Martin Diehl
83a3628765
bug fixes
2018-12-09 07:58:42 +01:00
Martin Diehl
d145b257aa
new version of numpy complain about overlong range argument
2018-12-09 07:57:05 +01:00
Martin Diehl
4130cbcffa
simplified
...
- always use quaternion as input for orientation
- addAPS34IDEstrainCoords uses table functionality
- rotateData can figure out whether input is vector or tensor
2018-12-09 07:10:31 +01:00
Philip Eisenlohr
3f8726464d
addOrientations now checks its input for convention conformity
2018-12-08 13:22:22 -05:00
Philip Eisenlohr
eaf2c77903
Merge branch 'orientationClass_with_negative_P' of magit1.mpie.de:damask/DAMASK into orientationClass_with_negative_P
2018-12-07 22:07:22 -05:00
Philip Eisenlohr
ac45a9e2d3
more output options, frame input changed to "lab expressed in crystal"
2018-12-07 22:03:14 -05:00
Martin Diehl
e8f4dc4c9f
Merge branch 'orientationClass_with_negative_P' into development
2018-12-06 07:26:08 +01:00
Martin Diehl
ee7e4ee0d9
python3 has different encoding syntax
2018-12-06 06:27:07 +01:00
Philip Eisenlohr
a6d4c73de0
added list of map and introduced "quat" keyword in quaternion init
2018-12-05 10:20:05 -05:00
Philip Eisenlohr
c0f7ae2798
updated scripts that still used formerly valid object properties of quaternions
2018-12-05 09:07:29 -05:00