Martin Diehl
4ddfd82304
better names
2019-12-05 18:32:21 +01:00
Martin Diehl
b1ff178109
Merge branch 'new-ASCII' into grid-filters
2019-12-05 18:06:56 +01:00
Philip Eisenlohr
2648a67dcd
fixed sort_by to respect updated index (upon subsequent adding of new data)
2019-12-05 12:02:10 -05:00
Philip Eisenlohr
3caf2c1296
condensing code
2019-12-05 09:05:50 -05:00
Martin Diehl
e7358746dc
taking care of prospector complaints
...
variables in 'eval' are hidden
2019-12-05 10:54:35 +01:00
Martin Diehl
274aaa7359
Merge branch 'new-ASCII' into grid-filters
2019-12-05 10:50:56 +01:00
Martin Diehl
1018b89296
nice to have..
2019-12-05 10:48:42 +01:00
Martin Diehl
f885748a58
variable was never used
2019-12-05 08:43:14 +01:00
Martin Diehl
1bf4946e67
invalid escape sequence
2019-12-05 08:37:39 +01:00
Martin Diehl
469d638afb
making table class feature complete
2019-12-05 06:57:09 +01:00
Martin Diehl
ee8e3386f4
shorter but still descriptive names
2019-12-05 06:16:29 +01:00
Martin Diehl
e7a67262f8
clear enough
2019-12-05 06:00:49 +01:00
Martin Diehl
2172e92e7e
test exotic input files
2019-12-05 05:57:47 +01:00
Martin Diehl
5fdf112f78
allow strings as data in ASCII file
2019-12-05 05:45:27 +01:00
Martin Diehl
1c83572589
more descriptive names
2019-12-05 05:11:58 +01:00
Martin Diehl
381c95bd1e
WIP: regrid functionality
2019-12-04 10:41:02 +01:00
Martin Diehl
07e9778798
one more test
2019-12-04 10:20:57 +01:00
Martin Diehl
bc41bbbec5
test coordinates-related functions
2019-12-04 09:23:08 +01:00
Martin Diehl
999321e588
Merge branch 'new-ASCII' into grid-filters
2019-12-04 07:45:01 +01:00
Martin Diehl
285075bb6b
ordered alphabetically
2019-12-04 06:15:32 +01:00
Martin Diehl
6902d3dd0a
repeated test
...
better sort alphabetically
2019-12-04 06:04:06 +01:00
Martin Diehl
6c31e22855
testing new style DADF5 file
2019-12-04 05:59:52 +01:00
Martin Diehl
32ebcea207
more tests
2019-12-04 05:49:43 +01:00
Martin Diehl
fecd4632b4
correct reporting of time
2019-12-04 05:49:17 +01:00
Martin Diehl
58a190ede8
Merge branch 'development' into incs-no-leading-zero
2019-12-04 05:19:38 +01:00
Martin Diehl
1110affec2
Merge branch 'new-ASCII' of magit1.mpie.de:/damask/DAMASK into new-ASCII
2019-12-04 05:10:01 +01:00
Martin Diehl
9ad8743396
using central functionality
2019-12-03 22:00:21 +01:00
Martin Diehl
e006e0ebec
functions for spatial coordinates on regular grids
2019-12-03 18:59:59 +01:00
Martin Diehl
3effea8e1d
also check operations that should NOT work
2019-12-03 17:03:03 +01:00
Martin Diehl
f5bbd3cf22
ensure functionality through unit testing
2019-12-03 16:39:54 +01:00
Martin Diehl
ff1778d149
Merge branch 'development' into new-ASCII
2019-12-03 15:56:49 +01:00
Martin Diehl
8f77843b0f
improved naming
...
- clearer variable names
- no '-' in attributes
- single source of truth
2019-11-30 09:01:37 +01:00
Martin Diehl
354c0123a1
backward compatibility
2019-11-30 08:40:59 +01:00
Martin Diehl
4185fcb4c3
adjust to new naming
2019-11-29 21:40:54 +01:00
Martin Diehl
dc3fc8f70c
do not clutter with leading zeros
2019-11-29 17:00:48 +01:00
Martin Diehl
76a1506893
small improvements
...
bugfix: writing correct labels (now consistent with readin)
error handling for inconsistent initialization
2019-11-28 20:18:54 +01:00
Martin Diehl
f2e722ed2e
polishing
2019-11-28 18:22:34 +01:00
Martin Diehl
3e65d44e07
centralized facilities for differential operations
...
note the need to reverse the grid shape in data from the ASCII table. If x is fastest,
z is slowest we require x to be the rightmost index
2019-11-28 15:46:22 +01:00
Martin Diehl
80b50f460e
cleaning
...
trying to get rid of strange re-ordering related to ASCII table data
layout
2019-11-28 10:09:22 +01:00
Martin Diehl
ca92400c2f
polishing
...
columns is the term used py pandas
2019-11-28 05:58:28 +01:00
Martin Diehl
b85049cb81
use brackets for line continuation with comments
2019-11-28 05:41:53 +01:00
Martin Diehl
98d5738fe6
Merge branch 'new-ASCII' into grid-filters
2019-11-28 05:12:36 +01:00
Martin Diehl
80002e6cfd
proper capitalization
2019-11-27 13:21:41 +01:00
Martin Diehl
cee095b58e
better use centralized code
2019-11-27 12:22:28 +01:00
Martin Diehl
7d4b982c73
make information on modifications mandatory
2019-11-27 12:08:23 +01:00
Martin Diehl
76c3577378
pandas.DataFrame needs to be a 2nd order array
2019-11-27 12:03:35 +01:00
Martin Diehl
39734ef53c
alter data
...
allows to access multiple columns ('f') and individual components
('1_f')
2019-11-27 10:56:29 +01:00
Martin Diehl
96714089b1
documented and tested handling of multi-dimensional data
...
more precise regex expressions. get_array can handle individual
components
2019-11-27 09:58:58 +01:00
Martin Diehl
882a11c5f8
get labels without shape information
2019-11-27 08:43:20 +01:00
Martin Diehl
2d96136a0d
more general constructor for Table
...
reading from file is just one case (now handled by static method).
General constructor needs data and header information as dictionary.
Works only with python 3.7 where dict keeps the insertion order. Earlier
python versions/other implementations might fail.
2019-11-26 22:53:46 +01:00
Martin Diehl
5661f60552
fname seems to be the common name
2019-11-26 21:36:24 +01:00
Martin Diehl
925a4f73d6
staticmethod better suited than class method
...
a classmethod changes the class, i.e. it assigns attributes and gives
them specific values.
a staticmethod does not alter the class
https://www.geeksforgeeks.org/class-method-vs-static-method-python
2019-11-26 20:32:54 +01:00
Martin Diehl
845cfc34ec
similar logic as in geom class
...
- filename is not part of the object
- transparent handling of files, strings, and path-like objects for file
IO
2019-11-26 14:26:25 +01:00
Martin Diehl
81abc43920
Merge branch 'development' into new-ASCII
2019-11-26 10:29:05 +01:00
Martin Diehl
23f5e0fa58
filters for operations on regular grids (in fourier space)
2019-11-26 10:25:39 +01:00
Martin Diehl
af78aaf2f1
testing rescale
2019-11-25 14:01:40 +01:00
Martin Diehl
e16024ddf9
Merge branch 'PythonImprovements' into pytest
2019-11-25 14:00:24 +01:00
Martin Diehl
476569390a
enable use of path objects, strings, and opened files
2019-11-25 13:47:14 +01:00
Martin Diehl
b757f02649
avoid repetitions
2019-11-25 12:04:57 +01:00
Martin Diehl
6d25506204
test for new pack functionality
2019-11-25 09:28:59 +01:00
Martin Diehl
969fa9bbc7
Merge branch 'PythonImprovements' into pytest
2019-11-25 09:15:06 +01:00
Martin Diehl
3e8518d861
following prospector guidelines
2019-11-24 19:30:00 +01:00
Martin Diehl
c9f9f7c681
pack causes trouble with tests ..
2019-11-24 19:02:19 +01:00
Martin Diehl
b2cdabd009
getting rid of shell scripts
2019-11-24 18:25:53 +01:00
Martin Diehl
816e86ae5f
phasing out python shell scripts
2019-11-24 15:13:26 +01:00
Martin Diehl
8186be6293
compress functionality should be part of the geom class
...
automated decision is base on heuristic whether compression is memory
efficient
2019-11-24 14:27:24 +01:00
Martin Diehl
02df55b9bd
bugfix
...
casting to plain array works only (and makes sense only) for a derived
type
2019-11-24 11:18:41 +01:00
Martin Diehl
6060abb375
cleaning
2019-11-24 09:10:47 +01:00
Martin Diehl
c9b1944493
handling of derived datatypes/structs
...
currently required for orientation
2019-11-24 08:50:27 +01:00
Martin Diehl
f30cbde99e
use first constituent as default
2019-11-24 08:04:40 +01:00
Martin Diehl
928a5c2e55
better use fixtures
2019-11-24 06:29:00 +01:00
Martin Diehl
2b392241f9
Merge branch 'PythonImprovements' into pytest
2019-11-23 19:25:22 +01:00
Martin Diehl
406ae29897
adopting rename in mechanics
2019-11-23 19:22:18 +01:00
Martin Diehl
3be1caa4ef
read_dataset has at least two dimensions
2019-11-23 19:21:41 +01:00
Martin Diehl
eb80a82e05
first idea how to test pointwise operations
2019-11-23 18:58:44 +01:00
Martin Diehl
e3f8195621
no not change line endings
2019-11-23 17:08:36 +01:00
Martin Diehl
4dc4442fae
small DADF5 file for testing
2019-11-23 16:15:08 +01:00
Martin Diehl
510e4752fd
using parametrized tests for better coverage
2019-11-23 14:03:47 +01:00
Martin Diehl
2810531c97
a test with reference results
2019-11-23 13:37:03 +01:00
Martin Diehl
834cd43b66
intention not clear
...
any ideas why __transforms__ was used?
2019-11-23 08:06:26 +01:00
Martin Diehl
ea4c4b6636
Merge branch 'PythonImprovements' into pytest
2019-11-22 22:10:20 +01:00
Martin Diehl
dfb95df689
migrating shell scripts to python class
2019-11-22 21:48:41 +01:00
Martin Diehl
c00af5c402
4 space indents are common practice
2019-11-22 20:52:36 +01:00
Martin Diehl
e5e3db8286
Merge branch 'PythonImprovements' into pytest
2019-11-22 15:42:27 +01:00
Martin Diehl
fad679a9a5
need to catch IOError
2019-11-22 15:19:20 +01:00
Martin Diehl
6e0b2a4fab
following prospector rules
2019-11-22 13:16:53 +01:00
Martin Diehl
dac63f7d92
subfolders not needed
2019-11-22 12:55:56 +01:00
Martin Diehl
77e410d7d1
follow prospector rules
2019-11-22 12:17:44 +01:00
Martin Diehl
a26a5738dd
polishing
2019-11-21 21:48:54 +01:00
Martin Diehl
e0f3fe3cc0
ported from hand written test class
2019-11-21 21:01:01 +01:00
Martin Diehl
a3376a35b7
testing mechanics module with pytest
2019-11-21 20:00:28 +01:00
Martin Diehl
cf88c1f907
correct syntax for integer comparison
2019-11-21 19:49:46 +01:00
Martin Diehl
a5ae82fe90
handle deprecation warning in python 3.8
2019-11-21 19:47:27 +01:00
Martin Diehl
7a7eea47b5
correct handling of arrays
...
all strains measures except for logarithmic had wrong off-diagonal
components
2019-11-21 19:46:05 +01:00
Martin Diehl
fb286af354
[skip sc] first draft
2019-10-31 10:47:40 +01:00
Martin Diehl
1c10459a5a
also use fast operation order
2019-10-30 21:09:17 +01:00
Martin Diehl
8a85123abc
4 space indent is python standard
2019-10-30 18:05:44 +01:00
Martin Diehl
b733bd3038
polar decomposition
2019-10-28 11:18:26 +01:00
navyanthkusam
fca288ae8a
performance improvement
...
this mapping is faster for large volumes
2019-10-25 14:47:36 +02:00
Philip Eisenlohr
894b646283
corrected name of U,V; fixed Mises_strain factor from 3/2 to 2/3;
2019-10-23 15:03:24 +02:00
Martin Diehl
2d08eb68b1
bugfix for (3x3) version of Cauchy
2019-10-23 14:39:52 +02:00
Martin Diehl
5e7f9a223b
should be a passive rotation
2019-10-21 23:17:58 +02:00
Martin Diehl
9489c04ccb
less confusing
2019-10-21 23:02:31 +02:00
Martin Diehl
ecc51e34d3
rouding should affect color calculation
...
avoid NaN in math.power(x,0.5). math.power(-0.0,0.5) is ok
2019-10-21 22:44:12 +02:00
Martin Diehl
578cbf9bbf
bugfixes:
...
- vonMises calculation was wrong
- wrong type of data used in some add_XXX
2019-10-21 18:07:35 +02:00
Martin Diehl
78a2941436
avoid numerical issues
2019-10-21 16:59:49 +02:00
Martin Diehl
51ed4d68e6
more info
2019-10-20 13:13:48 +02:00
Martin Diehl
b593dfbfd9
better layout
2019-10-20 11:34:05 +02:00
Martin Diehl
f00f6952c0
selecting by increment is a common task
...
https://www.python.org/dev/peps/pep-0257/
The docstring is a phrase ending in a period. It prescribes the function or method's effect as
a command ("Do this", "Return that"), not as a description; e.g. don't write "Returns the pathname ...".
2019-10-20 11:00:10 +02:00
Martin Diehl
8f315836b0
easier to use if end time is included:
2019-10-20 10:42:45 +02:00
Martin Diehl
64731369e3
general definition for strain tensors
2019-10-19 16:05:53 +02:00
Martin Diehl
a665d5726d
polishing
2019-10-19 13:22:37 +02:00
Martin Diehl
b31de5d0f6
outsourcing tensor math to mechanics class
...
strain calculation is generalize to arbitrary order and simplified: No
need for svd, F^T F/F F^T does the job.
2019-10-19 12:54:16 +02:00
Martin Diehl
e51f6cee72
improved handling of string types for HDF5
...
- convert bytes to string when reading
- convert string to bytes when writing
2019-10-19 09:47:26 +02:00
Martin Diehl
5f0a48fae7
enhanced and documented
2019-10-19 08:51:51 +02:00
Martin Diehl
dc9aca5710
copy and paste error/invalid syntax
2019-10-18 20:57:36 +02:00
Martin Diehl
5858d03a6b
prospector complaints for stupid reasons
2019-10-18 20:55:39 +02:00
Martin Diehl
3336cfc3da
better have tensor functions available
...
allows in-memory evaluation of results
2019-10-18 20:50:03 +02:00
Martin Diehl
1a34a6f7b5
some useful tensor operations
2019-10-18 20:41:39 +02:00
Martin Diehl
47ba7d49b5
allow to use the same label twice in a function
2019-10-18 20:39:00 +02:00
Martin Diehl
de912c22b4
Merge branch 'development' into HDF5-spectral-displacements
2019-10-18 12:54:12 +02:00
Franz Roters
91691744c6
Merge branch 'Marc-No-nonlocal' into 'development'
...
Marc no nonlocal
See merge request damask/DAMASK!98
2019-10-15 10:35:37 +02:00
Martin Diehl
708bbd3cb9
mesh/grid type transparent handling of coordinates
2019-10-12 16:15:04 +02:00
Martin Diehl
b208fa6565
takeover from Vitesh's work with small adoptions to current DADF5
2019-10-12 08:02:57 +02:00
Martin Diehl
0eef73935e
handling of derived types (orientation for the moment)
2019-10-11 08:35:21 +02:00
Martin Diehl
b8a1a5bb7d
v 0.2 is ok, not sure what the future brings so better check
2019-10-03 20:23:49 +02:00
Martin Diehl
0b29d08109
bump to DADF5 v0.3
...
contains displacements (for grid solver)
2019-10-03 19:02:17 +02:00
Martin Diehl
62fb4d2ea9
polishing
2019-10-01 14:30:09 -07:00
Martin Diehl
e96eb55edd
calculate different strain tensors
2019-09-30 14:28:58 -07:00
Martin Diehl
0e3b09adc1
negative eigenvalues are not possible
...
left/right Cauchy-Green Deformation Tensors are positive definit
https://de.wikipedia.org/wiki/Deformationsgradient
2019-09-30 14:12:15 -07:00
Martin Diehl
d95a795e3b
Merge branch 'MiscImprovements' into HDF5-spectral-displacements
2019-09-30 13:53:24 -07:00
Martin Diehl
0dd14a0652
correct reporting of version
2019-09-30 09:07:56 -07:00
Martin Diehl
457f9aa4e3
prospector found duplicated key
2019-09-30 08:53:53 -07:00
Martin Diehl
3206ee04bc
nodal displacements for grid solver
...
currently for non-MPI only
2019-09-27 20:38:02 -07:00
Martin Diehl
970d172160
correct message
2019-09-27 17:52:01 -07:00
Martin Diehl
ad83c8541d
same names as in python
2019-09-20 17:18:09 -07:00
Martin Diehl
fb61899c5f
seems that testing has Marc 2018.1 already
2019-09-20 20:54:30 +02:00
Martin Diehl
0b6620bfb7
Merge branch 'development' into MiscImprovements
...
F***ing commits to development!
2019-09-20 07:40:52 -07:00
Martin Diehl
4b2263bebe
conversion to float causes issues
...
test only current version of MSC.Marc
2019-09-20 03:21:53 +02:00
Yang Su
6fdab024b6
ensure that integer inputs to Rotation.fromX() translate into float quantities
2019-09-19 17:03:31 -04:00
Martin Diehl
7fd4b8bff6
more prospector hints
2019-09-19 12:51:16 -07:00
Martin Diehl
f1f88610dd
documenting
2019-09-19 12:32:15 -07:00
Martin Diehl
2e25a03d13
adopting to new prospector
2019-09-19 11:56:58 -07:00
Martin Diehl
35a009f513
prospector complaind
...
help details were anyway pretty useless
2019-09-19 11:41:41 -07:00
Martin Diehl
32639caec2
better readable
2019-09-19 11:12:44 -07:00
Martin Diehl
bf7db26680
Merge branch 'even-more-HDF5-postprocessing' into MiscImprovements
2019-09-19 10:49:14 -07:00
Philip Eisenlohr
76b08e10bd
following stricter Python docstring standards
2019-09-18 21:43:43 -04:00
Martin Diehl
4994c86e67
bugfix: hard-wired keyword resulted in missing materialpoint results
2019-09-16 13:31:49 -07:00
Martin Diehl
ee1327c519
[skip ci] typo
2019-09-16 11:21:06 -07:00
Martin Diehl
28bb92021d
avoid code duplication
2019-09-16 11:04:05 -07:00
Martin Diehl
980c02b0c3
selected increments by simulation time
2019-09-15 20:19:14 -07:00
Martin Diehl
86fb0a7942
time info needed for filtering of increments
2019-09-15 20:04:52 -07:00
Martin Diehl
b3b710c848
polishing
2019-09-15 19:56:07 -07:00
Martin Diehl
4cedcee0b4
handling of increments follows handling of other 'visible'-items
2019-09-15 17:08:03 -07:00
Martin Diehl
f6ac8c995f
simplified and selected better names
2019-09-15 16:00:19 -07:00
Martin Diehl
c76d4d3f87
avoid unneeded arguments
2019-09-15 15:24:23 -07:00
Martin Diehl
88eba27cec
avoid name duplication + polishing
2019-09-15 15:10:32 -07:00
Martin Diehl
04aefa84bc
more appropriate names
2019-09-15 15:02:16 -07:00
Martin Diehl
d413aef7c3
functionality for general calculations on datasets
...
currently limited to vectorized expressions.
2019-09-14 12:00:23 -07:00
Martin Diehl
8251725bce
WIP: different norm types
2019-09-14 10:53:33 -07:00
Martin Diehl
e4e9c5f558
support glob matching
...
more flexibility in selecting active datasets and groups
2019-09-14 09:55:42 -07:00
Martin Diehl
b85ac11c49
implemented ideas from discussion with Philip
...
group matching unified and with wildcard support
time step handling should become more convenient (WIP)
add_norm can not compute abs of scalar, added function for that
general polishing here and there
2019-09-14 09:07:23 -07:00
Martin Diehl
c13db4b3ca
renaming
...
on_air/active are not clear. visible seems to be the most appropriate
name
2019-09-13 21:49:22 -07:00
Martin Diehl
898f53295d
iter functions for groups
...
restore original selection after iterating (i.e. temp setting of active)
polishing: correct names and more details for HDF5 meta data
2019-09-13 21:14:52 -07:00
Martin Diehl
69462f8190
polished
...
strain calculation agrees up to 1e-4 with results from addStrainTensors.
Not too exciting, but ok
2019-09-13 19:37:25 -07:00
Martin Diehl
38f6609ad7
high level functions for selecting output
...
tested Cauchy stress calculation (comparison with addCauchy.py)
2019-09-13 18:36:06 -07:00
Martin Diehl
c5006e264b
handling prospector complaints
2019-09-13 16:07:39 -07:00
Martin Diehl
002383afc2
solved problem with postprocessing
...
- to not 'try' with h5py library, it might have another 'try'. Check
explicitly for empty argument
also some polishing
2019-09-13 16:01:30 -07:00
Martin Diehl
b2b625af3e
notes from discussion with Philip
2019-09-13 15:17:46 -07:00
Martin Diehl
f83a167414
file mode for high level funtion not useful
2019-09-13 09:49:30 -07:00
Martin Diehl
6f008c5d5f
rewrite pointwise add function
...
- all vectorized: Much faster
- passing in all relevant information allows to do sanity checks and add
useful meta data in HDF5
- improved readability
2019-09-13 06:02:42 -07:00
Martin Diehl
3db3e9e762
preparing for use of optional arguments to function
2019-09-11 21:20:14 -07:00
Martin Diehl
de313269d9
bugfix
2019-09-11 18:54:54 -07:00
Martin Diehl
953ba53211
adjusting for strict prospector checking
2019-09-11 18:22:33 -07:00
Martin Diehl
a6c69a744b
do operations vectorized
2019-09-11 17:57:24 -07:00
Martin Diehl
462bb07efd
Merge branch 'development' into even-more-HDF5-postprocessing
2019-09-11 16:29:44 -07:00
Martin Diehl
bc893762ec
no need to inverse a rotation, transpose is faster
2019-09-11 07:29:34 -07:00
Martin Diehl
fa2c100d6a
need to update microstructure to get grid update
2019-09-04 20:20:55 -07:00
Martin Diehl
f415a8cad2
Merge branch 'PythonProspectorRules' into even-more-HDF5-postprocessing
2019-09-04 14:23:07 -07:00
Martin Diehl
28c11cc373
bugfix
...
-update function was resetting size if not given
-dim does not work an all terminals, therefore also emph new values in
addition to dim old ones
2019-09-04 11:14:44 -07:00
Martin Diehl
ef285b482f
more references + citation style correction
2019-09-04 08:55:05 -07:00
Martin Diehl
6f07a20919
not sure what this code was intended to do
2019-09-03 17:23:26 -07:00
Martin Diehl
3657f81c59
documenting (in accordance with new prospector rules)
2019-09-03 17:18:06 -07:00
Martin Diehl
a428a924eb
DAMASK default citation style
2019-09-03 16:34:02 -07:00
Martin Diehl
97fc8a4029
following python3 recommendations
2019-09-03 15:44:28 -07:00
Martin Diehl
234019bb4d
dummy stuff not needed
2019-09-03 15:41:16 -07:00
Martin Diehl
b0d3615d67
more detailed documentation
2019-09-03 15:32:01 -07:00
Martin Diehl
7d48764999
added documentation and references
2019-09-03 15:25:25 -07:00
Martin Diehl
a073f36471
update for solver wrappers
2019-09-03 09:48:42 -07:00
Martin Diehl
fea16327ac
now properly escaped
2019-09-02 23:42:34 -07:00
Martin Diehl
d84cef4fab
pep8: W605 / invalid escape sequence '\ ' seems to be a false positive
2019-09-02 23:37:52 -07:00
Martin Diehl
9cf4f9537e
documenting
2019-09-02 23:23:46 -07:00
Martin Diehl
ba395977db
adjusting to new prospector
2019-09-02 11:09:03 -07:00
Martin Diehl
34b3beda27
DefaultMap needed for newer paraview
2019-09-02 10:51:32 -07:00
Martin Diehl
c51cf8d506
transferring post processing capabilities
2019-07-15 13:55:14 -07:00
Martin Diehl
b6bb8a4650
simple strain calculation for DADF5
...
further enhancement requires to give optional arguments to
add_genericpontwise
2019-07-06 21:41:29 -07:00
Martin Diehl
b6830b3ac1
Merge branch 'development' into even-more-HDF5-postprocessing
2019-06-14 10:28:22 +02:00
Martin Diehl
cede188e76
enable to explicitly set the environment
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required for running MPI processes when mpi4py is imported
2019-06-07 17:51:27 +02:00
Martin Diehl
1186bd16f5
Merge branch 'development' into even-more-HDF5-postprocessing
2019-06-04 22:39:10 +02:00
Philip Eisenlohr
dff690611e
fixed origin bug in VTK; VTK can be float; size defaults to 1 as longest dimension
2019-06-03 13:29:30 -04:00
Martin Diehl
bf27505faa
Merge branch 'development' into geometry-class
2019-05-31 16:21:50 +02:00
Martin Diehl
37de73535d
following PEP style guide
2019-05-30 20:08:39 +02:00
Martin Diehl
4cb0ba3803
not needed anymore
2019-05-30 19:26:41 +02:00
Martin Diehl
46f0ad052e
direct support for vtk output
...
- geom_check can now handle multiple files
- microstructure index is stored as integer in vtk file
2019-05-30 15:35:45 +02:00
Martin Diehl
b00581f1be
less picky on allowed datatypes
2019-05-30 13:29:29 +02:00
Martin Diehl
931fa9d36a
standardized and cleaned
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-write to file if given
-type casting is done in the geom class
2019-05-30 10:20:07 +02:00
Martin Diehl
f30eda0267
no need to loop over files
...
will procude the same file over and over again
2019-05-30 09:32:37 +02:00
Philip Eisenlohr
17168525b6
use srepr in __repr__
2019-05-29 18:14:30 -06:00
Martin Diehl
6e790e845a
correct rescaling
2019-05-29 19:36:02 +02:00
Martin Diehl
669ca82ce1
formatted return message also on interactive shells
2019-05-28 09:05:10 +02:00
Philip Eisenlohr
1f56ac6a4a
streamlining and bugfixing of geom-class
2019-05-27 22:45:34 -06:00
Martin Diehl
b69f0efbbc
improved and simplified reporting
2019-05-27 22:00:26 +02:00
Martin Diehl
615a4ab40f
keep float datatype
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based on the assumption, that no mixed float/int data is stored
2019-05-27 09:56:15 +02:00
Martin Diehl
6e06764e2d
using (enhanced) central functionality
2019-05-27 08:38:02 +02:00
Martin Diehl
b5cec797c0
cleaned
2019-05-26 23:03:31 +02:00
Martin Diehl
c8dfba89e5
using class
...
still a very complex script
2019-05-26 22:49:05 +02:00
Martin Diehl
0da39b0c69
copy and paste error
2019-05-26 22:08:42 +02:00
Martin Diehl
0039ac9551
always add comment at beginning
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usually, comments are related to the file history
2019-05-26 21:32:48 +02:00
Martin Diehl
7a500e77b1
not needed (DADF5 is the modern alternative)
2019-05-26 20:53:59 +02:00
Martin Diehl
07c9b8b8f0
avoiding unwanted changes
2019-05-26 20:28:19 +02:00
Martin Diehl
feb2340935
self-reporting functionality for updating
2019-05-26 17:58:54 +02:00
Martin Diehl
dcb79afc84
more user friendly errors
2019-05-26 12:03:21 +02:00
Martin Diehl
be3513d1e0
polishing.
...
python imports follow PEP8
2019-05-26 09:49:56 +02:00
Martin Diehl
9f63d768de
do not keep whitespaces
2019-05-25 13:48:38 +02:00
Martin Diehl
875643c363
same style
2019-05-25 10:24:45 +02:00
Martin Diehl
4788fc6046
making use of new class
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@philip: 1D arrangement needed?
2019-05-25 08:37:02 +02:00
Martin Diehl
cf374a04dc
using new class
2019-05-25 08:21:00 +02:00
Martin Diehl
7b6003fb32
no need for numpy.loadtxt (not compatible with 'to' and 'of' compression
2019-05-25 08:17:51 +02:00
Martin Diehl
420abfa162
use new class
2019-05-24 22:34:27 +02:00
Martin Diehl
f20c8fcffd
easier generation and modificaton of grid geometries
...
fits better than the general ASCII table class
2019-05-24 22:30:25 +02:00
Martin Diehl
a280f9a4a2
polishing
2019-05-23 17:26:38 +02:00
Martin Diehl
f6dda99bfb
more post processing functionality
2019-05-23 08:54:20 +02:00
Martin Diehl
e7ca371b14
routines to do pointwise operations
2019-05-20 19:56:45 +02:00
Martin Diehl
118c74a268
enable materialpoint output again
...
accidently lost during a former commit
2019-05-16 22:01:12 +02:00
Martin Diehl
339b86f784
bugfix + more verbose reporting
2019-05-16 11:44:03 +02:00
Martin Diehl
9f7fa5393a
fix for scalar datasets
2019-05-16 09:31:13 +02:00
Martin Diehl
3c0c0a2cd1
more flexible in selecting data
2019-05-16 00:27:06 +02:00
Martin Diehl
c6863a6124
also consider homogenization/materialpoint results
2019-05-15 23:38:24 +02:00
Philip Eisenlohr
4c7af713f1
added explicit method Rotation.fromBasis, which can treat real and reciprocal basis sets
2019-05-14 12:59:21 -04:00
Martin Diehl
f3c77cde87
Merge branch 'development' into MiscImprovements
2019-05-06 16:16:39 +02:00
Martin Diehl
9b0d3def1d
small changes suggested by Franz
2019-05-05 22:38:06 +02:00
Martin Diehl
39cc9e35ae
Merge branch 'development' into orientation_with_averaging
2019-05-05 22:12:09 +02:00
Martin Diehl
ebf01dee4f
store grid/size at geometry group
...
as outlined in the DAMASK results paper
2019-05-03 06:46:22 +02:00
Martin Diehl
b8bf329a74
Merge branch 'development' into MiscImprovements
2019-04-30 00:02:35 +02:00
Martin Diehl
327a8ab757
more details
2019-04-28 12:04:11 +02:00
Martin Diehl
c72518e52b
reflects current temp files
2019-04-28 07:22:12 +02:00
Martin Diehl
a5c620379b
tools to build a python wheel distribution
2019-04-26 20:54:58 +02:00
Martin Diehl
1ccc967544
enables auto include
2019-04-26 19:24:22 +02:00
Martin Diehl
1b9355327a
WIP: preparing for PIP package
2019-04-26 19:08:59 +02:00
Martin Diehl
009a47ad72
make python package independent from rest of DAMASK
...
https://packaging.python.org/guides/single-sourcing-package-version/
2019-04-25 20:05:42 +02:00
Martin Diehl
64c9a367c0
always install post processing scripts into {$DAMASK_ROOT}/bin
...
custom installation directions will be made available by more standard
approaches
2019-04-25 07:21:42 +02:00
Martin Diehl
53f6a4e030
too specific
...
- only works at MPIE
2019-04-25 06:00:56 +02:00
Martin Diehl
1330730717
inFZ needs 'proper' Rodriques--Franck vector
2019-04-19 09:04:54 +02:00
Martin Diehl
b97f10b6ff
forgotten changes in last commit + fromRandom
2019-04-19 08:17:02 +02:00
Martin Diehl
feca9fe0a0
Again changes to the return values.
...
A python function with no return value returns 'None'
2019-04-19 08:04:04 +02:00
Martin Diehl
9a43c2e4c5
fixed return values
...
- homomorph, standardize, etc. are silent in-place operations (return
None)
- homomorphed, standardized, etc. are out-of place operations that
report
2019-04-19 01:05:48 +02:00
Martin Diehl
25518df80c
fixes to quaternion class
...
- always store data as float (solves issues with truediv)
- fixed in-place multiplication and division
- consistent handling of "..ed()" functions
2019-04-19 00:44:12 +02:00
Philip Eisenlohr
4183eeaeca
[skip ci] disorientation may return full-fledged orientation obj and aux info, added rotation.standardize(d)
2019-04-18 18:06:00 -04:00
Martin Diehl
c4f56703a4
proper definition of homomorph
2019-04-18 17:11:51 +02:00
Martin Diehl
7570b187e7
do explicit homomorphing
...
only in cases when the underlying math cannot guarantee that the
resulting quaternion follows the convention
2019-04-18 16:26:05 +02:00
Martin Diehl
e8464814ae
explicit is better than implicit
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- if the quaternion does not follow the convention, use
"fromQuaternion(acceptHomomorph=True)"
2019-04-18 14:46:12 +02:00
Martin Diehl
71b0036323
return rotation as misorientation
2019-04-18 14:26:53 +02:00
Martin Diehl
481aac7952
misorientation calculation did not always follow convention
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- return homomorphed quaternion to ensure that real component is > 0
(equivalent to have axis angle limited to [0, pi]
2019-04-18 13:46:58 +02:00
Martin Diehl
b746b841f7
not needed
2019-04-18 12:04:36 +02:00
Martin Diehl
6b7fd6b7ea
visualizing data from DADF5: first prototype
2019-04-18 11:58:17 +02:00
Martin Diehl
7177813710
adding data to geometry
2019-04-17 19:57:16 +02:00
Martin Diehl
fdd5b93e7c
avoid FPE exceptions
2019-04-17 15:19:41 +02:00
Martin Diehl
a6e6db0559
more stable/robust conversions
2019-04-17 12:52:48 +02:00
Martin Diehl
079e683dd1
disorientation returns Orientation, not Rotation
2019-04-17 10:48:18 +02:00
Martin Diehl
3f8c16262e
fixed import statement
...
previous form only worked in python/damask folder
2019-04-17 09:45:18 +02:00
Martin Diehl
8609eb6eb7
improved names and layout
2019-04-17 09:34:49 +02:00
Martin Diehl
c7c6627dfb
don't try to figure out the input
2019-04-17 08:49:26 +02:00
Martin Diehl
fa18200447
quaternion is now in separate module
...
avoid long modules with multiple, only loosely related classes
2019-04-17 08:46:03 +02:00
Martin Diehl
d842902a76
consistent ordering
...
- qu, om, eu, ax, ro, ho, cu
2019-04-16 21:47:29 +02:00
Martin Diehl
8eb1a35dfb
first version of a library to parse HDF5
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- preliminarly called DADF5 (DAMASK HDF5)
- script to write (empty undeformed) geometries is also added
2019-04-13 11:25:53 +02:00
Philip Eisenlohr
3a7408a213
averaging possible for rotations and orientations; Rodrigues 3Dvector output only at top-level; code reordering
2019-04-12 09:03:47 -04:00
Philip Eisenlohr
3d6eb76da3
equivalentOrientations accepts scalar argument to directly return single rotation object (not single element list)
2019-04-11 19:07:41 -04:00
Philip Eisenlohr
2190c3ef46
fixed serious disorientation bug; sorted transformation functions
2019-04-11 18:32:07 -04:00
Philip Eisenlohr
b8285d5749
restored orientation averaging capability
2019-04-11 17:23:04 -04:00
Martin Diehl
019d1a9c5c
[skip ci] reference was wrong
2019-04-08 22:23:40 +02:00
Martin Diehl
dd51945570
checking for input errors
2019-03-28 07:25:20 +01:00
Martin Diehl
85a535b99c
is not used anymore
2019-03-07 22:35:43 +01:00
Martin Diehl
12587be595
was not used anymore
...
status bar can be used as a replacement, it does to flood log files as
extensively as the background thread
2019-03-07 20:48:09 +01:00
Philip Eisenlohr
eada10548e
[skip ci] no blank line after progress bars
2019-02-27 08:38:06 -05:00
Martin Diehl
e88182b007
improved converte, now with test
...
still needs to figure out how +P is handled
2019-02-24 14:39:34 +01:00
Martin Diehl
56781dfa5b
fiber was never used here and will be remove anyway
...
more user friendly formatting
2019-02-24 10:32:28 +01:00
Martin Diehl
73f6cb7020
fixed datatype
2019-02-24 09:12:21 +01:00
Martin Diehl
d3ac3cc0f5
using new Orientation class
2019-02-24 08:34:20 +01:00
Martin Diehl
9dc8dff4b1
cleaning and adding compatibility layer
2019-02-23 22:35:04 +01:00
Martin Diehl
b3455c825e
transition to new orientation class
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forward-backward conversion quite stable
2019-02-23 21:49:05 +01:00
Martin Diehl
93ae5cbd07
Merge remote-tracking branch 'origin/development' into 10-consistent-orientation-conversions-3
2019-02-22 23:05:36 +01:00
Martin Diehl
43376c39d8
addGrainID parses in quaternion
2019-02-22 11:25:39 +01:00
Martin Diehl
907f7ca560
transition to new class
2019-02-21 13:33:22 +01:00
Martin Diehl
88fc37d8a7
some more work on python3 compatible scripts
2019-02-15 16:22:52 +01:00
Martin Diehl
8b82941014
only Abaqus 2019 is available
2019-02-15 14:26:08 +01:00
Martin Diehl
c50078bafc
short version not needed any more
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Abaqus version is year
2019-02-15 14:22:26 +01:00
Martin Diehl
608852df83
rotation paper has angle as last component
2019-02-12 10:58:38 +01:00
Martin Diehl
7da8980cc0
bugfixes: wrong shape, wrong conversion
2019-02-12 09:04:35 +01:00
Martin Diehl
336a80091f
rodrigues is 4-vector with rotation being the last component
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established a single source of truth for length
2019-02-12 08:59:26 +01:00
Martin Diehl
97ac437686
more user friendly constructors
2019-02-12 08:14:27 +01:00