Commit Graph

1008 Commits

Author SHA1 Message Date
Tias Maiti 0077177c05 some polishing (numpy —> np, theTable —> table) 2015-03-02 05:06:29 +00:00
Chen Zhang 0d7355a49f correct help information. 2015-02-27 23:08:48 +00:00
Chen Zhang 1742725963 interpolate microstructure using Delaunay triangulation and Barycentric interpolation. 2015-02-27 22:59:09 +00:00
Haiming Zhang 9203b37fbc 1. Implement Hill1979 yield criterion (the residum and Jacobian);
2. Hill1979 works
2015-02-25 17:24:33 +00:00
Haiming Zhang 8b1846e78e 1. Implement Karafillis-Boyce yield criterion (the residum and Jacobian);
2. Karafillis-Boyce works
2015-02-24 16:46:09 +00:00
Haiming Zhang 39e17fc95a 1. add __init__() for the "Class" of each Criterion;
2. Polishing
2015-02-20 20:51:23 +00:00
Haiming Zhang a3e5da0bfd 1. Implement 2D and 3D Cazacu-Barlat yield criteria(the residum and Jacobian);
2. Both work
2015-02-20 20:34:47 +00:00
Haiming Zhang 09c357c70f 1. Fix bug of Yld2004-18p;
2. get deformation rate tensor and Lankford coefficient.
2015-02-20 14:40:24 +00:00
Martin Diehl 425251ae2b fixed bug: theTable -> table 2015-02-14 11:23:50 +00:00
Haiming Zhang 4a63aff1ed 1. Implement Yld2004-18p yield criterion(the residum and Jacobian);
2. Yld2004-18p yield criterion takes effect
2015-02-13 17:22:19 +00:00
Haiming Zhang 77cffd8040 1. fix up Banabic-Balan-Comsa 2003 (BBC2003) yield criterion;
2. add the calculation Jacobian of BBC2003; 
3. Now BBC2003 yield criterion takes effect
2015-02-12 20:48:03 +00:00
Haiming Zhang 69af205721 add the calculation of Jacobian of isotropic and anisotropic Barlat1991, shows better performance. 2015-02-12 11:04:00 +00:00
Haiming Zhang 40f1f3af23 add the calculation of Jacobian of Hill1948 and Drucker family criteria. 2015-02-11 19:06:23 +00:00
Philip Eisenlohr 53b40662ec now with executable, correct line endings, and ID tags. 2015-02-11 17:26:56 +00:00
Philip Eisenlohr d5f9f543ca Script to generate PNG image from given column (or 2D data in overall ASCIItable) with custom colormap and pixel sizes.
Supersedes “imageFromData” from “Code” repository.
2015-02-11 17:25:49 +00:00
Philip Eisenlohr 9eae665365 fixed ‘too many files open’ issue when processing a large list of input tables. 2015-02-11 17:22:47 +00:00
Haiming Zhang eed00007f9 Re-write the script:
1. replace curve_fit with leastsq, which supports the analytical Jacobian
2. specify a "class" (contains both residum and jacobian) for each criterion.
3. add the calculation of Jacobian
2015-02-11 16:49:40 +00:00
Tias Maiti 1b1ed3bbcf removed unnecessary lines 2015-02-11 06:18:08 +00:00
Martin Diehl 40a792d785 fixed bug in consistency check 2015-02-10 13:49:47 +00:00
Martin Diehl 63434c2ddb corrected error checking for correct type 2015-02-09 08:57:14 +00:00
Martin Diehl 7edd209ce4 corrected wrong name in add..., more verbose error checking for geom_from... 2015-02-07 22:22:28 +00:00
Martin Diehl 6140285ddd small changes (use ip.x instead of 1_ip). Probably we should modify postResults to use the 1_, 2_, 3_, standard notation for ip as well 2015-02-07 18:13:51 +00:00
Martin Diehl e4a94aa72b put changes on algorithm from geom_fromEuclideanDistance into addEuclideanDistance 2015-02-07 17:11:46 +00:00
Haiming Zhang f3bab46275 addthe Cazacu–Barlat (CZ) yield criterion (3D and 2D), Banabic–Balan–Comsa (BBC) Yield Criterion. 2015-02-07 16:58:57 +00:00
Haiming Zhang cdb7795956 1. Add default boundary constraint(no constraint) and initial guess to the dictionary
2. With the boundary constraint of exponential term, now non-quadratic yield criteria (isotropic Barlat 1991, anisotropic Barlar 1991, Hosford) take effect.
2015-02-07 11:07:45 +00:00
Haiming Zhang 0350b1829c 1. Replace curve_fit(see minpack.py) with curve_fit_bound(see damask/util.py), now the boundary constraint can be applied.
2. Transfer the output information into dictionary 'fittingCriteria', compact subroutine 'fit'.
2015-02-06 14:01:04 +00:00
Haiming Zhang ce09e992cc 1. Change yieldStress from 'list' to 'numpy.arrary', thanks to Martin's suggestion (3907);
2. Change '3*3' Cauchy stress tensor to '1*6', now the number of input 'xdata' for fitting is 6*Points, which is less than the former 9*Points.
2015-02-06 13:48:14 +00:00
Martin Diehl 0b3205a24b some suggestions how to simplify 2015-02-06 09:29:21 +00:00
Haiming Zhang 4f2c07063b Fix general Hosford! 2015-02-05 20:18:07 +00:00
Haiming Zhang 2b704b3905 Fix: Tresca, von Mises, Drucker, Hill 1948 criteria. 2015-02-04 16:47:35 +00:00
Haiming Zhang 2d568b49f2 add the output of standard deviation errors;
fix Hill 48 and anisotropic Barlat 1991
2015-02-04 13:04:34 +00:00
Haiming Zhang 3845c47e61 complement of 3897: add isotropic and anisotropic Barlat 1991 to the dictionary 2015-02-03 12:57:18 +00:00
Haiming Zhang bef846d294 add isotropic and anisotropic Barlat1991 yield criteria. 2015-02-03 12:54:16 +00:00
Haiming Zhang 55445af9bc 1. add initial guess and weight to the fitting (nonlinear least square regression);
2. extend the dictionary:fittingCriteria
2015-02-03 12:18:53 +00:00
Haiming Zhang cc6138ec41 rewrite "def fit()";
add format output.
2015-02-02 17:41:19 +00:00
Haiming Zhang fd75772a3f Fix the bug of calculating principal stresses. Now the fitting result is better for the criteria which expressed in principal stresses.
Thanks to Martin.
2015-02-02 16:52:28 +00:00
Martin Diehl 4772efbc45 fixed syntax error 2015-01-23 10:11:12 +00:00
Tias Maiti 2c9c04eb76 added script to replace all rows of an ASCII table by a single row containing their average 2015-01-23 00:57:10 +00:00
Martin Diehl 5be9a75cff fixed indentation 2015-01-22 09:04:01 +00:00
Martin Diehl 440263f2f0 simplified, removed deprecated synonyms 2015-01-22 09:03:18 +00:00
Martin Diehl ed6b4fe50a fixed issues when having grains and eulers 2015-01-13 16:04:49 +00:00
Martin Diehl c08f704dee added Id + a little help 2015-01-07 19:29:27 +00:00
Tias Maiti ca58216134 added missing math module import 2015-01-05 12:25:03 +00:00
Martin Diehl 3e3c13bf0b added missing math module import 2015-01-04 21:02:17 +00:00
Martin Diehl 8dea16c07f fixed wrong assignment of phase and made orientation comparison robust 2014-12-20 12:42:21 +00:00
Martin Diehl 5e8fff13d9 worked on the vtk binary out, still some problems with multicomponent datatypes 2014-12-18 21:46:38 +00:00
Martin Diehl 6604d0f8e8 polishing 2014-12-18 19:26:52 +00:00
Martin Diehl 9ac62e42df added possibility to specify number of bins to be sorted in advance to current cleared stage 2014-12-18 18:03:36 +00:00
Philip Eisenlohr 89f8ba979e Add x,y coordinates of stereographic projection of given direction (pole) in crystal frame. 2014-12-13 00:12:55 +00:00
Martin Diehl f8ce57abc8 removed aliases 'resolution' and 'dimension' for 'grid' and 'size' because some scripts did not have it anyway and the rename happened quite a while ago 2014-12-08 08:48:55 +00:00
Martin Diehl c067d0dc69 fixed wrong periodicity treatment 2014-12-05 10:35:56 +00:00
Luv Sharma 30920801aa extended for 2D, finds the bounding edges and assigns them 'physical' attribute. 2014-12-04 11:33:06 +00:00
Martin Diehl 47685ac7c4 added output of script ID do material.config 2014-12-03 10:09:47 +00:00
Martin Diehl 590106b889 added possibility to add randomly distributed second phase (index = indexGiven+1) 2014-12-02 22:22:11 +00:00
Philip Eisenlohr 3cfabe3b83 standardized script name reporting 2014-11-18 15:31:39 +00:00
Philip Eisenlohr b17dcd7652 added options ’—origin’ and ‘—geom’. Latter interprets the geom-header to derive voxel sizes. 2014-11-18 15:26:59 +00:00
Philip Eisenlohr 461a3fa979 fixed syntax error and added ‘—render’ option to immediately see output on screen 2014-11-18 15:24:09 +00:00
Philip Eisenlohr a3196669ea exchanged deprecated data array read function 2014-11-18 15:22:00 +00:00
Philip Eisenlohr 7136db1fd8 fixed syntax error: ’options.error’ —> ‘parser.error’ for error handling 2014-11-18 15:20:57 +00:00
Philip Eisenlohr 99ffa554eb added ‘1_*’ to ‘*’ as possible column label indicator 2014-11-18 15:20:10 +00:00
Philip Eisenlohr b5ef329f34 changed default position column format from .x,.y,.z to more standard 1_,2_,3_ 2014-11-18 15:18:27 +00:00
Martin Diehl b656113b11 added missing string import in marc_addUserOutput (introduced with rev 3718) and removed unwanted imports and introduce use of damask.extendableParser in some other scripts 2014-11-18 08:00:45 +00:00
Martin Diehl 409a75c964 fixed 2 small flaws in geom_fromAng, corrected stringID and stringName in all remaining files in 'pre' 2014-11-16 21:44:46 +00:00
Philip Eisenlohr 6a3546cee2 script to produce ASCIItable from geom dataset.
contains best-practice for looping over multiple input files (to avoid error caused by too many open file handles!)
2014-11-14 15:16:00 +00:00
Philip Eisenlohr deee3a175a polishing and simplifications 2014-11-14 14:53:48 +00:00
Martin Diehl 733e85f6e6 fixed bug in material.config when do not compress the data. Thanks to Noriki for figuring out 2014-11-14 13:53:55 +00:00
Martin Diehl 2d2eb4e001 using extendable option, numpy as np, etc. 2014-11-07 11:13:14 +00:00
Martin Diehl 047042ad9f using extendable option, numpy as np, etc. 2014-11-07 11:07:03 +00:00
Tias Maiti 7d6670d4cf fixed table —> theTable flaw in output finalization 2014-11-05 22:17:06 +00:00
Philip Eisenlohr 52160385a6 alternative expression to parse script filename (scriptID excluding file extension). 2014-11-05 22:05:37 +00:00
Philip Eisenlohr 9345640dfd mainly polished for “numpy as np”. added alternative expression to parse script filename (excluding file extension). 2014-11-05 22:04:59 +00:00
Philip Eisenlohr 35f8b9786e changed way to sample grid positions when placing primitive object. Should be somewhat more efficient now. 2014-11-05 22:02:40 +00:00
Philip Eisenlohr f7da804927 changed file handling to allow for serial processing of large file numbers. 2014-11-05 22:01:11 +00:00
Philip Eisenlohr f6741138e7 had badly messed up the file handling in commit 3630. STDIN did not work, files were not checked for existence… 2014-10-29 13:27:40 +00:00
Martin Diehl bdd2d55383 small bug fix for last commit 2014-10-24 06:36:01 +00:00
Philip Eisenlohr 13ba71a314 fixed bug where option.condition was altered in processing of first file, thus preventing additional files from seeing the same user input.
changed file handle setup to allow for large lists of input files.
2014-10-23 21:23:10 +00:00
Pratheek Shanthraj e779c2e1e6 specify mesh size 2014-10-21 14:42:13 +00:00
Pratheek Shanthraj 975e42b132 specify which surface(s) you want to tag 2014-10-21 13:57:17 +00:00
Luv Sharma 8dd575cdbe now making use of parser options for input arguments 2014-10-17 11:51:22 +00:00
Luv Sharma 0193578540 now appending the bounding surface information to the gmsh geometry file 2014-10-16 17:23:17 +00:00
Luv Sharma 7e0c6f420b added shebang script to make executable, some properties and few improvements. Now giving the bounding surfaces. 2014-10-16 15:53:46 +00:00
Martin Diehl dc7a4bb978 using damasks extentable option + correct version string 2014-10-16 14:56:44 +00:00
Luv Sharma ff0f619015 started to write a script for finding bounding surfaces from gmsh geo file. 2014-10-16 14:07:25 +00:00
Martin Diehl ce1f17c9cb worked on the binary vtk out needed for large datasets 2014-10-14 07:13:13 +00:00
Martin Diehl 5e16cdd14f added support for multiple entries per line 2014-10-13 13:58:26 +00:00
Martin Diehl e1530afac7 test for geom_fromTable (does not work for empty black or whitelist) 2014-10-13 09:54:01 +00:00
Martin Diehl f4de982182 svn caused trouble due to rename, again some missing files 2014-10-10 12:11:10 +00:00
Martin Diehl 46d67f63d8 added test for converter from Ricardo's files 2014-10-10 08:54:48 +00:00
Martin Diehl 57e522566a updated python style 2014-10-09 17:03:06 +00:00
Martin Diehl 47c8bfeacb commented code 2014-10-09 11:01:07 +00:00
Martin Diehl d86f091026 some small fixes, reporting still needs update 2014-10-06 12:47:52 +00:00
Martin Diehl 2836b2fb35 work in progress, extending to more criteria 2014-10-03 09:27:20 +00:00
Martin Diehl 033a275d82 a bunch of small changes. deleted compiled FFTW libraries 2014-10-02 21:27:03 +00:00
Philip Eisenlohr 23ee538dcb shortened syntax. fixed undefined file['croak'] 2014-10-02 04:49:46 +00:00
Philip Eisenlohr bfe20a3af8 added $Id$ property and LF line endings. 2014-09-29 15:57:31 +00:00
Martin Diehl f2d9d66129 improved readibility, fixed negative coordinates, improved output 2014-09-29 15:55:17 +00:00
Martin Diehl ff475f1459 first draft of a constraint voronoi tessellation to match grain distribution 2014-09-29 10:19:49 +00:00
Philip Eisenlohr 496c3d4bc8 added line breaks identifier and $Id$ flag 2014-09-25 21:54:42 +00:00
Philip Eisenlohr b85797c109 significant speed improvement for large grids.
polished messages and fixed error reporting bug.
2014-09-24 23:47:52 +00:00
Tias Maiti 78ab14806f fixed bug in parser option type definition 2014-09-21 17:59:06 +00:00
Tias Maiti 14530b0a76 fixed bug 'the table' instead of 'table' 2014-09-19 15:24:59 +00:00
Martin Diehl d07a098724 fixed wrong help introduced with last change on 3Dvisualize 2014-09-19 09:50:26 +00:00
Martin Diehl a7d831de06 forgot to import python module 2014-09-15 10:07:52 +00:00
Martin Diehl 5657119b11 updated post processing test: rotateData is doing something, corrected addDeviator defauls 2014-09-12 14:49:26 +00:00
Martin Diehl f2c4db0bb5 correcting help and default, some comments 2014-09-12 14:46:12 +00:00
Martin Diehl afb9a2186b removed explicit default setting: type='string' and action='store' 2014-09-12 14:14:55 +00:00
Martin Diehl 9ba7851c14 fixed bug in calculation of spherical part. Variables in python functions are intent(inout) in Fortran language! 2014-09-12 13:13:05 +00:00
Martin Diehl 5f986f3d54 updated to contain latest python improvements 2014-09-10 16:14:37 +00:00
Philip Eisenlohr 5a159dcdfa script to add scalar data and/or RGB color tuples to rectilinear VTK file (*.vtr) 2014-09-05 20:28:39 +00:00
Tias Maiti e286cf4c74 fixed bug "theTable" instead of "table" 2014-09-03 14:53:12 +00:00
Tias Maiti b566eed5a8 fixed error in last commit 2014-08-28 18:50:48 +00:00
Tias Maiti 5d96f62b44 fixed bug "theTable" instead of "table" 2014-08-28 17:37:27 +00:00
Martin Diehl 6cdcdecdfa post processing scripts are working again.
@Philip: definining one offset for shiftData and one factor for scaleData for tensor/vector/special>1 seems to be more reasonable than per component
2014-08-25 21:13:39 +00:00
Martin Diehl d93c40a3dd fixed small bug ('theTable' instead of 'table') and simplified 2014-08-25 12:53:11 +00:00
Martin Diehl 1ba7cbb046 fixed small bug ('theTable' instead of 'table') and simplified 2014-08-25 12:39:12 +00:00
Martin Diehl c7837e1f66 changed manual input/output close to class method 2014-08-22 16:58:53 +00:00
Philip Eisenlohr 99e3c9a397 fixed (potentially) buggy rotation of tensors. convention is:
with A v = b
v' = R v
A' = R A R^T
such that
A' v' = R A R^T  R v = R A v (= R b = b', i.e. old result transformed into other coordinate basis)
2014-08-22 15:32:48 +00:00
Philip Eisenlohr df27115472 extended "scalar" capabilities to "special" having arbitrary dimension (defaults to 1, i.e. former scalar case). Breaks backward compatibility since "--scalar" is now "--special". However, "-s" still works as before... 2014-08-22 15:25:51 +00:00
Philip Eisenlohr 9d26bfa375 try to go on despite crappy data (containing dead ends in the segment network) 2014-08-21 17:23:16 +00:00
Philip Eisenlohr 77df55c998 extended "scalar" capabilities to "special" having arbitrary dimension (defaults to 1, i.e. former scalar case). Breaks backward compatibility since "--scalar" is now "--special". However, "-s" still works as before... 2014-08-21 17:16:43 +00:00
Philip Eisenlohr 9aa22d4a08 simplified column key generation 2014-08-21 16:17:23 +00:00
Philip Eisenlohr 96b16dd97b reshape "matrix" input data from (currently wrong) 9x1 to 3x3 layout.
simplified input validity check.
2014-08-21 16:14:06 +00:00
Philip Eisenlohr 0bcd508298 added new option "no-data" to omit output of microstructure data field, i.e. generates plain mesh only 2014-08-21 16:01:11 +00:00
Tias Maiti b573d06c3f fixed bug where initial microstructure array was allocated (factor 2) too large in anticipation of later 2D tiling. 2014-08-18 21:32:53 +00:00
Martin Diehl c6eab9dab7 fixed wrong order in linear interpolation for stress 2014-08-18 20:09:09 +00:00
Martin Diehl e637f6344c added possibility to fit to more than one yield point, now using linear interpolation between around given threshold value 2014-08-18 18:21:36 +00:00
Martin Diehl ad7fe1ecbc fixed bug (wrong index in stress tensor for Hill48) and possible deadlock 2014-08-10 21:22:22 +00:00
Martin Diehl 15a6015bc2 added some more post processing tests
DAMASK env now reports in MiB (GiB is too big for small machines)
2014-08-07 16:51:26 +00:00
Martin Diehl df50707445 fixed some small flaws 2014-08-07 16:16:02 +00:00
Martin Diehl c8f16f16fa fixed bug in hill criterion 2014-08-06 20:07:47 +00:00
Martin Diehl 649e637561 added some more post processing tests and improved output 2014-08-06 19:06:33 +00:00
Martin Diehl 938352d43a fixed calculation of size and dimension in case of 2D (was limited to third dim only)
plus polishing
2014-08-06 15:25:18 +00:00
Martin Diehl cbafad50d0 some more work on the postprocessing scripts, decreased test tolerance because spectral decomposition has rounding errors (depending on machine/python/numpy version) 2014-08-06 13:27:09 +00:00
Martin Diehl 96fe818f5d added more options to command line 2014-08-05 14:29:36 +00:00
Martin Diehl b4b9835d18 some work on the yield surface generator 2014-08-04 21:15:56 +00:00
Martin Diehl a0f9865133 updated to state-of-the art file handling etc 2014-08-04 20:07:20 +00:00
Martin Diehl 0874ebe096 new script to name abaqus output like in for marc.
written by B Bode from University of Kassel
2014-08-04 18:41:44 +00:00
Martin Diehl 7df8f04f65 updated test for postprocessing and improve some of the scripts 2014-08-04 17:53:41 +00:00
Tias Maiti 5556dad13f updated to latest ASCII table handling style 2014-07-28 15:34:11 +00:00
Martin Diehl 0b93e7c5a5 corrected addDivergence script. Restarting still not working for new state, needs further investigations: tightend tolerances again 2014-07-27 09:43:00 +00:00
Tias Maiti e01630e073 fixed bug in tuple assignment 2014-07-25 17:49:22 +00:00
Philip Eisenlohr bee6e0b09b added optional weighting column 2014-07-25 16:38:04 +00:00
Martin Diehl a804b23b7a bugfixing 2014-07-24 22:02:10 +00:00
Martin Diehl d0ecc0943c added addPK2 script to test 2014-07-24 21:42:13 +00:00
Martin Diehl 7954c9a4a3 more and improved tests for add... 2014-07-24 20:21:18 +00:00
Martin Diehl 38048a09f2 introduced use of choice for argparse where applicable 2014-07-24 18:47:09 +00:00
Martin Diehl 42032cbc25 started to restructure fitting to criterion 2014-07-22 21:59:58 +00:00
Martin Diehl e5dc9e79cc some more changes improving the post processing scripts 2014-07-22 14:21:49 +00:00
Martin Diehl e8d2e787bc updated first 9 post processing scripts to latest ASCII table handling style 2014-07-21 19:55:05 +00:00
Martin Diehl c8cd775747 added spectral solver grid location and index function to util library 2014-07-21 17:49:45 +00:00
Martin Diehl 2f0ecdf7e8 improved file handling etc. to follow newest style 2014-07-16 16:41:04 +00:00
Martin Diehl e7c282a02d some further improvements on ASCII table handling 2014-07-10 09:27:51 +00:00
Martin Diehl f72a87f94b polished scripts (option parser, numpy) 2014-07-09 10:07:24 +00:00
Martin Diehl fd2164b391 von Mises fitting seems to work, still needs polishing (adding options etc) 2014-07-09 09:31:26 +00:00
Martin Diehl 5f638a059a corrected string substitution 2014-07-09 07:17:58 +00:00
Martin Diehl fdb4f2ffea now the program flow is working 2014-07-08 16:09:02 +00:00
Philip Eisenlohr 826f3d4dc7 added possibility to rotate primitives.
better help text.
2014-07-07 17:32:37 +00:00
Martin Diehl 7a478d646a added call to DAMASK spectral 2014-07-07 14:17:44 +00:00
Martin Diehl a48b4cfc95 improved dummy yield surface generator 2014-07-04 13:40:15 +00:00
Martin Diehl a68fe7c77b first draft of a script to compute yield surfaces with the spectral solver 2014-07-02 10:42:51 +00:00
Martin Diehl 1ff38b98af fixed error in file handling 2014-06-18 09:00:57 +00:00
Martin Diehl 51b92f3ef9 simplified option parsing (so far, only for addCalculation and addMises) 2014-06-17 07:10:10 +00:00
Luv Sharma 596ee18da9 improved the regex for header reading 2014-06-08 14:43:32 +00:00
Philip Eisenlohr 31aded8311 no scaling of the output by size (seeds files are within 0..1)
plus some polishing here and there
2014-06-08 12:48:32 +00:00
Philip Eisenlohr b0ab048d7b now aware of "origin" keyword in seeds-file 2014-06-07 18:15:08 +00:00
Philip Eisenlohr e3c4e0ecfc added option to override bounding box calculation from data with own geometry. 2014-06-07 18:14:30 +00:00
Philip Eisenlohr 72e9c512bd polishing of variable names, comments, and some of the programming structure. 2014-06-07 18:13:29 +00:00
Philip Eisenlohr 2f249773c9 fixed missing Python module 2014-06-06 15:11:15 +00:00
Philip Eisenlohr 32b315487c removed debug printing 2014-06-06 14:46:41 +00:00
Philip Eisenlohr 59e8cd1d7e new script: Add data in column(s) of second ASCIItable selected from row that is given by the value in a mapping column 2014-06-06 14:35:37 +00:00
Philip Eisenlohr 63c1a0a212 updated to croaking, scriptID, IO-piping. 2014-06-06 09:43:28 +00:00
Pratheek Shanthraj 522efaac92 added immutable option 2014-06-05 17:18:52 +00:00
Philip Eisenlohr 9834c8466c scripts to scale, shift, and rotate scalar, vector, or tensor quantities of ASCIItables (in-place!) 2014-05-27 08:08:10 +00:00
Philip Eisenlohr 3ec323e564 Create seed file by taking microstructure indices from given ASCIItable column. 2014-05-26 14:57:39 +00:00
Philip Eisenlohr f81c6f6890 changed ASCIItable reading from _asArray (deprecated) to _readArray.
observe physical box size.
added compatibility to VTK > version 5.
2014-05-26 14:35:25 +00:00
Philip Eisenlohr 65f1f55a87 added option to pre-rotate orientation (change lab frame) 2014-05-26 14:31:42 +00:00
Philip Eisenlohr 51e7f9eed9 added --reverse option. corrected help hint regarding sorting order 2014-05-23 14:05:58 +00:00
Philip Eisenlohr 06715dc99f added "no data check" and updated script backbone to be consistent with other scripts (croak). 2014-05-19 13:43:26 +00:00
Martin Diehl 89c896678b added printing of cli arguments to seeds_fromRandom, fixed regression in compile_CoreModule and DAMASK_spectral_doxygen 2014-05-15 09:58:31 +00:00
Philip Eisenlohr 8a80f5ec7a fixed typo that prevented selection of "Moore" neighborhood.
made "boundary" and "biplane" synonyms.
adopted more modern treatment of geom-files.
introduced scale for voxel size (independent of physical size and resolution given in geom-file).
2014-05-14 15:26:06 +00:00
Philip Eisenlohr 8b9ed55928 small "beautification" 2014-05-13 15:03:55 +00:00
Philip Eisenlohr 13f1607e15 changed default behavior to (system-provided) random seed instead of fixed "0" 2014-05-03 02:36:23 +00:00
Tias Maiti 0885ea8023 changed variable interpolation to be useable in connection with dictionary definitions for formulas. Slightly less efficient but now much more powerful... 2014-05-02 19:56:56 +00:00
Philip Eisenlohr a8a9c8eef5 added possibility to not sort (--sort none) output by its --separation such that the output can be used in conjunction with the VTK files produced by DAMASK. 2014-04-14 21:45:24 +00:00
Philip Eisenlohr a85ea307f1 changed (with backward compatibility) option "origin" to more suitable name of "center" since it specifies the position of the primitive's center, while "origin" could be mistaken for the lower left corner or such... 2014-04-09 14:22:27 +00:00
Philip Eisenlohr babde13c6a capture missing --vtk option 2014-04-03 01:00:00 +00:00
Martin Diehl 33af5af8cb some small changes on the header/shebang 2014-04-01 19:29:14 +00:00
Martin Diehl 342ca0be47 tested new scripts to update shebang, all files got same shebang (and for python files encoding) 2014-04-01 18:41:14 +00:00
Martin Diehl 782b54a430 more LF, Id, and executable status changes 2014-04-01 17:52:31 +00:00
Claudio Zambaldi 559f14ca35 prepended *draw_manual for faster processing in "new" Mentat, thx Christoph 2014-04-01 17:06:10 +00:00
Martin Diehl 188002f16e more LF, Id, and executable status changes 2014-04-01 16:58:54 +00:00
Martin Diehl c254f87814 now assuming periodic microstructures (was not fully correct before, assuming non-periodicity) 2014-04-01 16:43:39 +00:00
Philip Eisenlohr 16743f8631 explicitly state unbuffered ASCIIoutput 2014-03-28 18:15:37 +00:00
Christoph Kords f19955c84a added options to specify the columns for the grain IDs and segments
improved error handling
2014-03-12 14:26:44 +00:00
Martin Diehl 0363b1fb04 updated reporting (according to addCauchy) 2014-03-10 14:01:39 +00:00
Christoph Kords e10f8f1b5e corrected typo 2014-03-04 16:43:22 +00:00
Philip Eisenlohr 943349fdbb bunch of new scripts:
gwyddion_filter tries to smoothen out Gwyddion data sets.
vtk_fromGwyddion produces vtk mesh from Gwyddion data set.
geom_addPrimitive allows to add box, cylinder, or ellipsoidal blobs to geom file.
2014-03-04 03:34:34 +00:00
Philip Eisenlohr 6fd8407d6e moved "predefined" to colormap init
cleaned interpolate to not change color model

fixed color range cropping issue
2014-02-28 16:09:01 +00:00
Philip Eisenlohr 63569b19b6 added use of "defaultdict" from collections 2014-02-28 15:56:28 +00:00
Philip Eisenlohr fdbde250dc deleted obsolete table.data_rewind to be pipe-safe 2014-02-28 15:55:48 +00:00
Martin Diehl 27c83f60a6 fixed typo 2014-02-26 15:05:34 +00:00
Philip Eisenlohr 7f08c976c3 skip file if mandatory column not found in ASCIItable 2014-02-26 14:56:06 +00:00
Philip Eisenlohr 98a8b47a09 can now read legacy VTK files with unstructured grid data 2014-02-24 19:23:08 +00:00
Martin Diehl 9d402022aa fixed small bug when using renumber option 2014-02-15 10:37:50 +00:00
Martin Diehl 371a027de9 added option '--renumber' to geom_rescale and geom_grainGrowth to renumber microstructures from 1 to N (without gaps), off by default.
added metavar information to some scripts
2014-02-14 13:17:29 +00:00
Philip Eisenlohr a659d071a9 added '--degrees' option to indicate Euler angles unit 2014-02-10 18:01:21 +00:00
Philip Eisenlohr 85e4896478 "--degrees" option to specify Euler angles in degrees (instead of radians) 2014-02-09 20:36:42 +00:00
Philip Eisenlohr ccb950f3d8 checked Unix command piping conformity -- seems to now work:
seeds_fromRandom |
geom_fromVoronoiTessellation |
geom_grainGrowth |
geom_unpack |
geom_pack

However, grainGrowth functionality seems broken...
2014-02-03 23:44:29 +00:00
Martin Diehl f66c0727d0 fixed wrong type for arguments introduced last time (must be string to have multiples) 2014-02-03 20:23:49 +00:00
Martin Diehl 7a9fa061de added --compress option: for ang files filtered to have single orientation in grain (OIM filter), microstructure and texture in material.config are compressed 2014-01-30 12:00:20 +00:00
Philip Eisenlohr 3c2af8e7a6 fixed dropped file handle when flushing closed output... 2014-01-29 21:16:44 +00:00
Philip Eisenlohr 24d7f55f55 check whether output is already stopped (in command piping for instance) 2014-01-29 21:13:36 +00:00
Philip Eisenlohr cd18ec2abf removed unneccesary table.data_rewind, which breaks command piping 2014-01-29 21:03:56 +00:00
Martin Diehl ee99216edc polishing compile_CoreModule, bug fix for Makefile 2014-01-28 07:34:13 +00:00
Philip Eisenlohr 1bd456aa22 corrected options.error --> parser.error 2014-01-27 14:30:37 +00:00
Philip Eisenlohr a1cfc85d74 produce VTK unstructured grid with voxels around all points given in an ASCIItable. 2014-01-27 14:10:29 +00:00
Philip Eisenlohr 13fed38a2f add scalar and RGB tuples from ASCIItable to existing VTK voxel cloud (*.vtu) 2014-01-27 14:05:03 +00:00
Philip Eisenlohr c9c6588f7c renamed seeds file related scripts in a (hopefully) consistent manner 2014-01-23 20:48:33 +00:00
Philip Eisenlohr eda9076157 use existing geom file and produce seed points from each voxel (filtering possible) 2014-01-23 20:43:42 +00:00
Martin Diehl 8b4af554ba added verbosity on help messages 2014-01-20 14:41:56 +00:00
Luv Sharma 649b8b91fe fixed reporting of arguments 2014-01-15 15:10:13 +00:00
Martin Diehl db18b3c77f added missing script arguments in documentation part of the header 2014-01-14 10:53:45 +00:00
Martin Diehl 0f101c8dbf adopted to improved HDF5 format 2014-01-13 16:22:01 +00:00
Martin Diehl aab0208c65 more modifications, only configure needs modifications 2014-01-12 17:29:00 +00:00
Martin Diehl a614e76968 first post processing script for HDF5 output 2014-01-07 20:42:51 +00:00
Philip Eisenlohr 4f30a6e05b now compatible with new table.data_readArray method 2013-12-31 21:06:32 +00:00
Martin Diehl 2f1db8f69a introduced delimiter option (default = tab) for ascii table output, use space for geometry files 2013-12-17 08:16:29 +00:00
Philip Eisenlohr e20ffb379d changed numpy.readtxt logic from "data_asArray" returning a copy to inplace "data_readArray" now directly storing into self.data 2013-12-14 03:51:22 +00:00
Philip Eisenlohr 600389ac44 new script to sort ASCIItable according to (multiple) columns 2013-12-14 03:48:50 +00:00
Martin Diehl 37046cd2ea changed Fortran standard to 2008 2013-12-12 22:30:22 +00:00
Christoph Kords 0f8790c148 clarified help string 2013-12-12 08:48:57 +00:00
Philip Eisenlohr 10c8a1a3ce corrected typo in usage hint 2013-12-12 02:35:01 +00:00
Philip Eisenlohr 894776ca67 fixed stupid bug addressing a dict by dict{key} instead of dict[key] 2013-12-11 14:30:27 +00:00
Philip Eisenlohr 44b3687e7c added option to invert output data range (1.0 -- 0.0 instead of 0.0 -- 1.0) 2013-12-10 00:27:22 +00:00
Philip Eisenlohr e4cea31a9d small bug fix: options.error --> parser.error 2013-12-09 15:58:35 +00:00
Philip Eisenlohr e2d4cc8b3d fixed former nonsense definition of lab frame direction 2013-12-09 15:57:21 +00:00
Philip Eisenlohr 26690859bb deal more gracefully with problematic user input. 2013-12-09 15:54:47 +00:00
Philip Eisenlohr 7fb1a3130a now VTK 6 compatible 2013-12-09 15:41:29 +00:00
Philip Eisenlohr c7ac903dc7 fixed missing comma in script list... 2013-12-09 15:37:36 +00:00
Philip Eisenlohr 090fca8683 deleted left-over debug statement 2013-11-26 20:24:40 +00:00
Philip Eisenlohr d498eca242 deleted left-over debug statement 2013-11-26 20:22:52 +00:00
Philip Eisenlohr b63d2eafe8 new scripts for:
-generating vtk point cloud from x,y,z ASCIItable data
-adding scalar values and color tuples from ASCIItable to vtk point cloud
-permuting data in ASCIItable columns (used to shuffle ordered grain indices)
2013-11-26 20:19:27 +00:00
Philip Eisenlohr a45c7dbb62 new ASCIItable scripts to add
- quaternion and/or Euler representation of lattice orientation (given in rotation matrix, etc.)
- RGB color code of crystal direction in laboratory frame (matching closely the TSL-OIM scheme of inverse pole figures).
2013-11-25 19:11:02 +00:00
Philip Eisenlohr 0337b4f319 added script to produce VTK point cloud from seed file coordinates 2013-11-20 17:33:05 +00:00
Martin Diehl feaccae652 set threshold for values treated as zero to 1.e-12 (was 1.e-15) to avoid flip in strain direction 2013-11-19 19:39:14 +00:00
Martin Diehl e1e76cb257 fixed bug in OIMang_hex2cub.py, added test for correct number of microstructures (should be equal to header info) 2013-11-14 17:37:42 +00:00
Martin Diehl d2cbca35b2 fixed syntax error in last commit 2013-11-13 12:51:48 +00:00
Martin Diehl 9b7007b937 added accidently deleted output of texturei again 2013-11-13 12:46:20 +00:00
Martin Diehl 103ae3cd0d introduced on the fly copying for 2D microstructures in 3 dimension 2013-11-12 17:04:36 +00:00
Pratheek Shanthraj fc8811c07d switched to faster algorithm and removed buggy multi-threading 2013-11-11 13:00:31 +00:00
Martin Diehl 9ac8846e41 compiling with hdf5 is now working for DAMASK (if HDF5=ON) and for playground example in private 2013-11-07 12:52:36 +00:00
Philip Eisenlohr 463ecfd296 switched to damask.ASCIItable parsing, now aware of synonyms in geometry header, and speed-up by some orders of magnitude due to scipy.ndimage.filters use... 2013-11-04 14:12:10 +00:00
Martin Diehl 1ff98296b3 added output of default values, still does not run for my geometry 2013-10-25 11:58:03 +00:00
Philip Eisenlohr 5c1c0028e0 throw error if RCB segment list is not properly connected, i.e., complain about "dead ends" along the segment chain. 2013-10-24 18:55:16 +00:00
Philip Eisenlohr 705d23a5ed fixed bug for non-present "microstructure" info in header. 2013-10-15 12:36:52 +00:00
Martin Diehl 47577e3d11 introduced synonym "grains" for deprecated "grains" to ensure backward compatibility 2013-10-15 09:50:20 +00:00
Philip Eisenlohr 6f467c0789 added "-fPIC" flag to make sure (independent of local f2py settings) that position independent code will be generated for the shared "code" object in DAMASK's python lib 2013-09-23 19:07:12 +00:00
Philip Eisenlohr 9280b0a4e2 fixed bug where configuration wrote floating point numbers for grain IDs and texture IDs. 2013-09-23 18:35:30 +00:00
Martin Diehl 1915215c6f commented out not working use of vtk class 2013-09-20 11:27:11 +00:00
Martin Diehl 3eb8aa1362 checked for python3 compatibility:
use "print('foo')" instead of "print 'foo'"
and "except(error) as e" instead of "except error,e"
2013-09-14 10:52:02 +00:00
Martin Diehl a17b85cba8 deleted wrong colormap script, was there twice. correct one (modified recently by Philip) is called perceptualUniformColormap 2013-09-11 08:15:05 +00:00
Martin Diehl 022696c8f3 fixed output to screen 2013-09-11 07:45:42 +00:00
Philip Eisenlohr 538a471246 updated $Id$ handling.
added (colored) my script's name reporting.
2013-09-09 14:12:00 +00:00
Philip Eisenlohr ec6587e7f5 corrected help message 2013-09-09 14:11:16 +00:00
Philip Eisenlohr f02ee16b3d fixed missing comma in "pre" symlinking list. 2013-09-09 14:09:38 +00:00
Philip Eisenlohr b3463b2ed6 added intel openmp library to linking list. (-liomp5 was necessary when using IMKL...) 2013-09-09 14:08:44 +00:00
Christoph Kords 7bbee3fe60 write size as exponential not float, otherwise small numbers get rounded (to zero) 2013-08-21 15:25:27 +00:00
Franz Roters 4f7cd76b29 renamed texture_rotation into texture_transformation
changed keyword for material.config to axes in line with geom_fromAng.py
former keyword rotation is still recognized for compatibility
2013-07-24 11:09:39 +00:00
Pratheek Shanthraj d2ccc06aee added line break between rotation and euler angle information for correct parsing of config file 2013-07-23 14:33:30 +00:00
Pratheek Shanthraj c8cc397bf4 small bug fix 2013-07-23 12:40:26 +00:00
Christoph Kords 26df077c2a translating scalar data that contain vector components to vector data 2013-07-22 08:24:04 +00:00
Martin Diehl 69b3359047 forgot in last commit 2013-07-18 13:31:40 +00:00
Martin Diehl 2201a73a46 added (?correct and working?) rotation for conversion from ANG and updated bold verbosity of all other scripts 2013-07-18 13:28:54 +00:00
Martin Diehl a39005ef1c added possibility to specify formula with array return type
added support for numpy
2013-07-16 21:48:23 +00:00
Philip Eisenlohr 7d5f1270d5 fixed nasty bug that prevented proper grid rescaling 2013-07-16 21:11:44 +00:00
Philip Eisenlohr cb09c17fa2 simplified $Id treatment.
now reports own name in bold during runtime.
2013-07-10 09:15:42 +00:00
Philip Eisenlohr 31e0469b34 changed key "grains" to "microstructures" to be consistent with .geom description later. 2013-07-10 09:14:53 +00:00
Philip Eisenlohr f75604c235 fixed bug in output of origin (reported size instead) 2013-07-10 09:13:21 +00:00
Philip Eisenlohr fafa69b846 added possibility to have microstructure indices for seed points. Hence, multiple seed points can belong to the same final grain. 2013-07-10 09:12:00 +00:00
Philip Eisenlohr 0fa9f7dc22 can now show data for tables lacking column labels (use option --nolabels) 2013-07-08 11:56:16 +00:00
Pratheek Shanthraj 930e605afc bug fixes and more optimizations 2013-07-03 00:48:21 +00:00
Pratheek Shanthraj 34ef7b0f34 now fully anisotropic grain growth possible by setting up the function "interfacialEnergy" 2013-07-02 04:32:32 +00:00
Pratheek Shanthraj 5ff8a7067e fixed bug and re-reverted to faster version. added python multiprocessing functionality. polishing and renaming 2013-07-01 17:15:24 +00:00
Philip Eisenlohr 89cea68bc5 now using ASCIItable object and numpy array.repeat --> about 50x faster for large geoms (i.e. several mio voxels). 2013-06-30 19:11:16 +00:00
Philip Eisenlohr 39758f5c53 removed twoD option remnants 2013-06-30 19:09:01 +00:00
Philip Eisenlohr 1f891c544d now using ASCIItable object (much faster file writing).
(temporarily) switched back to rev2496 logic...
changed to diffusion distance as command line argument (instead of taking sqrt(time))
2013-06-30 13:51:21 +00:00
Philip Eisenlohr dd3d53e238 simplified grid/size synonyms treatment 2013-06-30 13:47:01 +00:00
Philip Eisenlohr 21c4447955 polishing and code unifications 2013-06-30 12:35:04 +00:00
Philip Eisenlohr 24fc14c2f3 fixed small syntax error introduced in last commit... 2013-06-30 00:46:52 +00:00
Philip Eisenlohr 77aa1c27b0 now based on damask.ASCIItable object
continue with next if one file is broken (used to stop!)
packing of already packed works now
overall speed improvement
standard unpacked output is 2D: use -1/--onedimensional for linear list
2013-06-30 00:39:48 +00:00
Philip Eisenlohr fcc2736431 now based on damask.ASCIItable object
continue with next if one file is broken (used to stop!)
improved index substitution and adopted more numpy functions --> notably faster
2013-06-30 00:37:03 +00:00
Philip Eisenlohr f204c38d4d now based on damask.ASCIItable object
continue with next if one file is broken (used to stop!)
switched to numpy functions for geom reshaping and writing --> 10x faster
2013-06-30 00:34:16 +00:00
Philip Eisenlohr 7d6035dcfa now based on damask.ASCIItable object
continue with next if one file is broken (used to stop!)
2013-06-30 00:31:44 +00:00
Philip Eisenlohr da1b4ff05b now based on damask.ASCIItable object
switched to numpy functions for grid generation --> about 20x faster.
2013-06-30 00:30:06 +00:00
Philip Eisenlohr b2c8a7e345 removed tabs (and extended tab-awareness of pre-commit hook to python scripts) 2013-06-29 21:14:58 +00:00
Martin Diehl e3a1e70542 started to use vtk class for writing results 2013-06-27 18:21:20 +00:00
Pratheek Shanthraj 4537720895 faster version for large number of grains. now performing diffusion on a small window around each grain where window around each grain is obtained cheaply 2013-06-27 16:57:14 +00:00
Philip Eisenlohr 034a6bc926 grid dimension can be changed by factor ("2x"), or left alone with number <= 0.
now understands packed geom structure.
2013-06-27 15:35:49 +00:00
Philip Eisenlohr 5f347648e1 now understands packed geom structure 2013-06-27 15:34:37 +00:00
Harsha Phukan 76171eec15 added possibility for factors---indicated by "x" at the end---and left-alone condition now comprises "0" as well as "negative numbers. understands packed structures, too. 2013-06-27 12:58:12 +00:00