Martin Diehl
e1530afac7
test for geom_fromTable (does not work for empty black or whitelist)
2014-10-13 09:54:01 +00:00
Martin Diehl
f4de982182
svn caused trouble due to rename, again some missing files
2014-10-10 12:11:10 +00:00
Martin Diehl
46d67f63d8
added test for converter from Ricardo's files
2014-10-10 08:54:48 +00:00
Martin Diehl
57e522566a
updated python style
2014-10-09 17:03:06 +00:00
Martin Diehl
47c8bfeacb
commented code
2014-10-09 11:01:07 +00:00
Martin Diehl
d86f091026
some small fixes, reporting still needs update
2014-10-06 12:47:52 +00:00
Martin Diehl
2836b2fb35
work in progress, extending to more criteria
2014-10-03 09:27:20 +00:00
Martin Diehl
033a275d82
a bunch of small changes. deleted compiled FFTW libraries
2014-10-02 21:27:03 +00:00
Philip Eisenlohr
23ee538dcb
shortened syntax. fixed undefined file['croak']
2014-10-02 04:49:46 +00:00
Philip Eisenlohr
bfe20a3af8
added $Id$ property and LF line endings.
2014-09-29 15:57:31 +00:00
Martin Diehl
f2d9d66129
improved readibility, fixed negative coordinates, improved output
2014-09-29 15:55:17 +00:00
Martin Diehl
ff475f1459
first draft of a constraint voronoi tessellation to match grain distribution
2014-09-29 10:19:49 +00:00
Philip Eisenlohr
496c3d4bc8
added line breaks identifier and $Id$ flag
2014-09-25 21:54:42 +00:00
Philip Eisenlohr
b85797c109
significant speed improvement for large grids.
...
polished messages and fixed error reporting bug.
2014-09-24 23:47:52 +00:00
Tias Maiti
78ab14806f
fixed bug in parser option type definition
2014-09-21 17:59:06 +00:00
Tias Maiti
14530b0a76
fixed bug 'the table' instead of 'table'
2014-09-19 15:24:59 +00:00
Martin Diehl
d07a098724
fixed wrong help introduced with last change on 3Dvisualize
2014-09-19 09:50:26 +00:00
Martin Diehl
a7d831de06
forgot to import python module
2014-09-15 10:07:52 +00:00
Martin Diehl
5657119b11
updated post processing test: rotateData is doing something, corrected addDeviator defauls
2014-09-12 14:49:26 +00:00
Martin Diehl
f2c4db0bb5
correcting help and default, some comments
2014-09-12 14:46:12 +00:00
Martin Diehl
afb9a2186b
removed explicit default setting: type='string' and action='store'
2014-09-12 14:14:55 +00:00
Martin Diehl
9ba7851c14
fixed bug in calculation of spherical part. Variables in python functions are intent(inout) in Fortran language!
2014-09-12 13:13:05 +00:00
Martin Diehl
5f986f3d54
updated to contain latest python improvements
2014-09-10 16:14:37 +00:00
Philip Eisenlohr
5a159dcdfa
script to add scalar data and/or RGB color tuples to rectilinear VTK file (*.vtr)
2014-09-05 20:28:39 +00:00
Tias Maiti
e286cf4c74
fixed bug "theTable" instead of "table"
2014-09-03 14:53:12 +00:00
Tias Maiti
b566eed5a8
fixed error in last commit
2014-08-28 18:50:48 +00:00
Tias Maiti
5d96f62b44
fixed bug "theTable" instead of "table"
2014-08-28 17:37:27 +00:00
Martin Diehl
6cdcdecdfa
post processing scripts are working again.
...
@Philip: definining one offset for shiftData and one factor for scaleData for tensor/vector/special>1 seems to be more reasonable than per component
2014-08-25 21:13:39 +00:00
Martin Diehl
d93c40a3dd
fixed small bug ('theTable' instead of 'table') and simplified
2014-08-25 12:53:11 +00:00
Martin Diehl
1ba7cbb046
fixed small bug ('theTable' instead of 'table') and simplified
2014-08-25 12:39:12 +00:00
Martin Diehl
c7837e1f66
changed manual input/output close to class method
2014-08-22 16:58:53 +00:00
Philip Eisenlohr
99e3c9a397
fixed (potentially) buggy rotation of tensors. convention is:
...
with A v = b
v' = R v
A' = R A R^T
such that
A' v' = R A R^T R v = R A v (= R b = b', i.e. old result transformed into other coordinate basis)
2014-08-22 15:32:48 +00:00
Philip Eisenlohr
df27115472
extended "scalar" capabilities to "special" having arbitrary dimension (defaults to 1, i.e. former scalar case). Breaks backward compatibility since "--scalar" is now "--special". However, "-s" still works as before...
2014-08-22 15:25:51 +00:00
Philip Eisenlohr
9d26bfa375
try to go on despite crappy data (containing dead ends in the segment network)
2014-08-21 17:23:16 +00:00
Philip Eisenlohr
77df55c998
extended "scalar" capabilities to "special" having arbitrary dimension (defaults to 1, i.e. former scalar case). Breaks backward compatibility since "--scalar" is now "--special". However, "-s" still works as before...
2014-08-21 17:16:43 +00:00
Philip Eisenlohr
9aa22d4a08
simplified column key generation
2014-08-21 16:17:23 +00:00
Philip Eisenlohr
96b16dd97b
reshape "matrix" input data from (currently wrong) 9x1 to 3x3 layout.
...
simplified input validity check.
2014-08-21 16:14:06 +00:00
Philip Eisenlohr
0bcd508298
added new option "no-data" to omit output of microstructure data field, i.e. generates plain mesh only
2014-08-21 16:01:11 +00:00
Tias Maiti
b573d06c3f
fixed bug where initial microstructure array was allocated (factor 2) too large in anticipation of later 2D tiling.
2014-08-18 21:32:53 +00:00
Martin Diehl
c6eab9dab7
fixed wrong order in linear interpolation for stress
2014-08-18 20:09:09 +00:00
Martin Diehl
e637f6344c
added possibility to fit to more than one yield point, now using linear interpolation between around given threshold value
2014-08-18 18:21:36 +00:00
Martin Diehl
ad7fe1ecbc
fixed bug (wrong index in stress tensor for Hill48) and possible deadlock
2014-08-10 21:22:22 +00:00
Martin Diehl
15a6015bc2
added some more post processing tests
...
DAMASK env now reports in MiB (GiB is too big for small machines)
2014-08-07 16:51:26 +00:00
Martin Diehl
df50707445
fixed some small flaws
2014-08-07 16:16:02 +00:00
Martin Diehl
c8f16f16fa
fixed bug in hill criterion
2014-08-06 20:07:47 +00:00
Martin Diehl
649e637561
added some more post processing tests and improved output
2014-08-06 19:06:33 +00:00
Martin Diehl
938352d43a
fixed calculation of size and dimension in case of 2D (was limited to third dim only)
...
plus polishing
2014-08-06 15:25:18 +00:00
Martin Diehl
cbafad50d0
some more work on the postprocessing scripts, decreased test tolerance because spectral decomposition has rounding errors (depending on machine/python/numpy version)
2014-08-06 13:27:09 +00:00
Martin Diehl
96fe818f5d
added more options to command line
2014-08-05 14:29:36 +00:00
Martin Diehl
b4b9835d18
some work on the yield surface generator
2014-08-04 21:15:56 +00:00
Martin Diehl
a0f9865133
updated to state-of-the art file handling etc
2014-08-04 20:07:20 +00:00
Martin Diehl
0874ebe096
new script to name abaqus output like in for marc.
...
written by B Bode from University of Kassel
2014-08-04 18:41:44 +00:00
Martin Diehl
7df8f04f65
updated test for postprocessing and improve some of the scripts
2014-08-04 17:53:41 +00:00
Tias Maiti
5556dad13f
updated to latest ASCII table handling style
2014-07-28 15:34:11 +00:00
Martin Diehl
0b93e7c5a5
corrected addDivergence script. Restarting still not working for new state, needs further investigations: tightend tolerances again
2014-07-27 09:43:00 +00:00
Tias Maiti
e01630e073
fixed bug in tuple assignment
2014-07-25 17:49:22 +00:00
Philip Eisenlohr
bee6e0b09b
added optional weighting column
2014-07-25 16:38:04 +00:00
Martin Diehl
a804b23b7a
bugfixing
2014-07-24 22:02:10 +00:00
Martin Diehl
d0ecc0943c
added addPK2 script to test
2014-07-24 21:42:13 +00:00
Martin Diehl
7954c9a4a3
more and improved tests for add...
2014-07-24 20:21:18 +00:00
Martin Diehl
38048a09f2
introduced use of choice for argparse where applicable
2014-07-24 18:47:09 +00:00
Martin Diehl
42032cbc25
started to restructure fitting to criterion
2014-07-22 21:59:58 +00:00
Martin Diehl
e5dc9e79cc
some more changes improving the post processing scripts
2014-07-22 14:21:49 +00:00
Martin Diehl
e8d2e787bc
updated first 9 post processing scripts to latest ASCII table handling style
2014-07-21 19:55:05 +00:00
Martin Diehl
c8cd775747
added spectral solver grid location and index function to util library
2014-07-21 17:49:45 +00:00
Martin Diehl
2f0ecdf7e8
improved file handling etc. to follow newest style
2014-07-16 16:41:04 +00:00
Martin Diehl
e7c282a02d
some further improvements on ASCII table handling
2014-07-10 09:27:51 +00:00
Martin Diehl
f72a87f94b
polished scripts (option parser, numpy)
2014-07-09 10:07:24 +00:00
Martin Diehl
fd2164b391
von Mises fitting seems to work, still needs polishing (adding options etc)
2014-07-09 09:31:26 +00:00
Martin Diehl
5f638a059a
corrected string substitution
2014-07-09 07:17:58 +00:00
Martin Diehl
fdb4f2ffea
now the program flow is working
2014-07-08 16:09:02 +00:00
Philip Eisenlohr
826f3d4dc7
added possibility to rotate primitives.
...
better help text.
2014-07-07 17:32:37 +00:00
Martin Diehl
7a478d646a
added call to DAMASK spectral
2014-07-07 14:17:44 +00:00
Martin Diehl
a48b4cfc95
improved dummy yield surface generator
2014-07-04 13:40:15 +00:00
Martin Diehl
a68fe7c77b
first draft of a script to compute yield surfaces with the spectral solver
2014-07-02 10:42:51 +00:00
Martin Diehl
1ff38b98af
fixed error in file handling
2014-06-18 09:00:57 +00:00
Martin Diehl
51b92f3ef9
simplified option parsing (so far, only for addCalculation and addMises)
2014-06-17 07:10:10 +00:00
Luv Sharma
596ee18da9
improved the regex for header reading
2014-06-08 14:43:32 +00:00
Philip Eisenlohr
31aded8311
no scaling of the output by size (seeds files are within 0..1)
...
plus some polishing here and there
2014-06-08 12:48:32 +00:00
Philip Eisenlohr
b0ab048d7b
now aware of "origin" keyword in seeds-file
2014-06-07 18:15:08 +00:00
Philip Eisenlohr
e3c4e0ecfc
added option to override bounding box calculation from data with own geometry.
2014-06-07 18:14:30 +00:00
Philip Eisenlohr
72e9c512bd
polishing of variable names, comments, and some of the programming structure.
2014-06-07 18:13:29 +00:00
Philip Eisenlohr
2f249773c9
fixed missing Python module
2014-06-06 15:11:15 +00:00
Philip Eisenlohr
32b315487c
removed debug printing
2014-06-06 14:46:41 +00:00
Philip Eisenlohr
59e8cd1d7e
new script: Add data in column(s) of second ASCIItable selected from row that is given by the value in a mapping column
2014-06-06 14:35:37 +00:00
Philip Eisenlohr
63c1a0a212
updated to croaking, scriptID, IO-piping.
2014-06-06 09:43:28 +00:00
Pratheek Shanthraj
522efaac92
added immutable option
2014-06-05 17:18:52 +00:00
Philip Eisenlohr
9834c8466c
scripts to scale, shift, and rotate scalar, vector, or tensor quantities of ASCIItables (in-place!)
2014-05-27 08:08:10 +00:00
Philip Eisenlohr
3ec323e564
Create seed file by taking microstructure indices from given ASCIItable column.
2014-05-26 14:57:39 +00:00
Philip Eisenlohr
f81c6f6890
changed ASCIItable reading from _asArray (deprecated) to _readArray.
...
observe physical box size.
added compatibility to VTK > version 5.
2014-05-26 14:35:25 +00:00
Philip Eisenlohr
65f1f55a87
added option to pre-rotate orientation (change lab frame)
2014-05-26 14:31:42 +00:00
Philip Eisenlohr
51e7f9eed9
added --reverse option. corrected help hint regarding sorting order
2014-05-23 14:05:58 +00:00
Philip Eisenlohr
06715dc99f
added "no data check" and updated script backbone to be consistent with other scripts (croak).
2014-05-19 13:43:26 +00:00
Martin Diehl
89c896678b
added printing of cli arguments to seeds_fromRandom, fixed regression in compile_CoreModule and DAMASK_spectral_doxygen
2014-05-15 09:58:31 +00:00
Philip Eisenlohr
8a80f5ec7a
fixed typo that prevented selection of "Moore" neighborhood.
...
made "boundary" and "biplane" synonyms.
adopted more modern treatment of geom-files.
introduced scale for voxel size (independent of physical size and resolution given in geom-file).
2014-05-14 15:26:06 +00:00
Philip Eisenlohr
8b9ed55928
small "beautification"
2014-05-13 15:03:55 +00:00
Philip Eisenlohr
13f1607e15
changed default behavior to (system-provided) random seed instead of fixed "0"
2014-05-03 02:36:23 +00:00
Tias Maiti
0885ea8023
changed variable interpolation to be useable in connection with dictionary definitions for formulas. Slightly less efficient but now much more powerful...
2014-05-02 19:56:56 +00:00
Philip Eisenlohr
a8a9c8eef5
added possibility to not sort (--sort none) output by its --separation such that the output can be used in conjunction with the VTK files produced by DAMASK.
2014-04-14 21:45:24 +00:00
Philip Eisenlohr
a85ea307f1
changed (with backward compatibility) option "origin" to more suitable name of "center" since it specifies the position of the primitive's center, while "origin" could be mistaken for the lower left corner or such...
2014-04-09 14:22:27 +00:00
Philip Eisenlohr
babde13c6a
capture missing --vtk option
2014-04-03 01:00:00 +00:00
Martin Diehl
33af5af8cb
some small changes on the header/shebang
2014-04-01 19:29:14 +00:00
Martin Diehl
342ca0be47
tested new scripts to update shebang, all files got same shebang (and for python files encoding)
2014-04-01 18:41:14 +00:00
Martin Diehl
782b54a430
more LF, Id, and executable status changes
2014-04-01 17:52:31 +00:00
Claudio Zambaldi
559f14ca35
prepended *draw_manual for faster processing in "new" Mentat, thx Christoph
2014-04-01 17:06:10 +00:00
Martin Diehl
188002f16e
more LF, Id, and executable status changes
2014-04-01 16:58:54 +00:00
Martin Diehl
c254f87814
now assuming periodic microstructures (was not fully correct before, assuming non-periodicity)
2014-04-01 16:43:39 +00:00
Philip Eisenlohr
16743f8631
explicitly state unbuffered ASCIIoutput
2014-03-28 18:15:37 +00:00
Christoph Kords
f19955c84a
added options to specify the columns for the grain IDs and segments
...
improved error handling
2014-03-12 14:26:44 +00:00
Martin Diehl
0363b1fb04
updated reporting (according to addCauchy)
2014-03-10 14:01:39 +00:00
Christoph Kords
e10f8f1b5e
corrected typo
2014-03-04 16:43:22 +00:00
Philip Eisenlohr
943349fdbb
bunch of new scripts:
...
gwyddion_filter tries to smoothen out Gwyddion data sets.
vtk_fromGwyddion produces vtk mesh from Gwyddion data set.
geom_addPrimitive allows to add box, cylinder, or ellipsoidal blobs to geom file.
2014-03-04 03:34:34 +00:00
Philip Eisenlohr
6fd8407d6e
moved "predefined" to colormap init
...
cleaned interpolate to not change color model
fixed color range cropping issue
2014-02-28 16:09:01 +00:00
Philip Eisenlohr
63569b19b6
added use of "defaultdict" from collections
2014-02-28 15:56:28 +00:00
Philip Eisenlohr
fdbde250dc
deleted obsolete table.data_rewind to be pipe-safe
2014-02-28 15:55:48 +00:00
Martin Diehl
27c83f60a6
fixed typo
2014-02-26 15:05:34 +00:00
Philip Eisenlohr
7f08c976c3
skip file if mandatory column not found in ASCIItable
2014-02-26 14:56:06 +00:00
Philip Eisenlohr
98a8b47a09
can now read legacy VTK files with unstructured grid data
2014-02-24 19:23:08 +00:00
Martin Diehl
9d402022aa
fixed small bug when using renumber option
2014-02-15 10:37:50 +00:00
Martin Diehl
371a027de9
added option '--renumber' to geom_rescale and geom_grainGrowth to renumber microstructures from 1 to N (without gaps), off by default.
...
added metavar information to some scripts
2014-02-14 13:17:29 +00:00
Philip Eisenlohr
a659d071a9
added '--degrees' option to indicate Euler angles unit
2014-02-10 18:01:21 +00:00
Philip Eisenlohr
85e4896478
"--degrees" option to specify Euler angles in degrees (instead of radians)
2014-02-09 20:36:42 +00:00
Philip Eisenlohr
ccb950f3d8
checked Unix command piping conformity -- seems to now work:
...
seeds_fromRandom |
geom_fromVoronoiTessellation |
geom_grainGrowth |
geom_unpack |
geom_pack
However, grainGrowth functionality seems broken...
2014-02-03 23:44:29 +00:00
Martin Diehl
f66c0727d0
fixed wrong type for arguments introduced last time (must be string to have multiples)
2014-02-03 20:23:49 +00:00
Martin Diehl
7a9fa061de
added --compress option: for ang files filtered to have single orientation in grain (OIM filter), microstructure and texture in material.config are compressed
2014-01-30 12:00:20 +00:00
Philip Eisenlohr
3c2af8e7a6
fixed dropped file handle when flushing closed output...
2014-01-29 21:16:44 +00:00
Philip Eisenlohr
24d7f55f55
check whether output is already stopped (in command piping for instance)
2014-01-29 21:13:36 +00:00
Philip Eisenlohr
cd18ec2abf
removed unneccesary table.data_rewind, which breaks command piping
2014-01-29 21:03:56 +00:00
Martin Diehl
ee99216edc
polishing compile_CoreModule, bug fix for Makefile
2014-01-28 07:34:13 +00:00
Philip Eisenlohr
1bd456aa22
corrected options.error --> parser.error
2014-01-27 14:30:37 +00:00
Philip Eisenlohr
a1cfc85d74
produce VTK unstructured grid with voxels around all points given in an ASCIItable.
2014-01-27 14:10:29 +00:00
Philip Eisenlohr
13fed38a2f
add scalar and RGB tuples from ASCIItable to existing VTK voxel cloud (*.vtu)
2014-01-27 14:05:03 +00:00
Philip Eisenlohr
c9c6588f7c
renamed seeds file related scripts in a (hopefully) consistent manner
2014-01-23 20:48:33 +00:00
Philip Eisenlohr
eda9076157
use existing geom file and produce seed points from each voxel (filtering possible)
2014-01-23 20:43:42 +00:00
Martin Diehl
8b4af554ba
added verbosity on help messages
2014-01-20 14:41:56 +00:00
Luv Sharma
649b8b91fe
fixed reporting of arguments
2014-01-15 15:10:13 +00:00
Martin Diehl
db18b3c77f
added missing script arguments in documentation part of the header
2014-01-14 10:53:45 +00:00
Martin Diehl
0f101c8dbf
adopted to improved HDF5 format
2014-01-13 16:22:01 +00:00
Martin Diehl
aab0208c65
more modifications, only configure needs modifications
2014-01-12 17:29:00 +00:00
Martin Diehl
a614e76968
first post processing script for HDF5 output
2014-01-07 20:42:51 +00:00
Philip Eisenlohr
4f30a6e05b
now compatible with new table.data_readArray method
2013-12-31 21:06:32 +00:00
Martin Diehl
2f1db8f69a
introduced delimiter option (default = tab) for ascii table output, use space for geometry files
2013-12-17 08:16:29 +00:00
Philip Eisenlohr
e20ffb379d
changed numpy.readtxt logic from "data_asArray" returning a copy to inplace "data_readArray" now directly storing into self.data
2013-12-14 03:51:22 +00:00
Philip Eisenlohr
600389ac44
new script to sort ASCIItable according to (multiple) columns
2013-12-14 03:48:50 +00:00
Martin Diehl
37046cd2ea
changed Fortran standard to 2008
2013-12-12 22:30:22 +00:00
Christoph Kords
0f8790c148
clarified help string
2013-12-12 08:48:57 +00:00
Philip Eisenlohr
10c8a1a3ce
corrected typo in usage hint
2013-12-12 02:35:01 +00:00
Philip Eisenlohr
894776ca67
fixed stupid bug addressing a dict by dict{key} instead of dict[key]
2013-12-11 14:30:27 +00:00
Philip Eisenlohr
44b3687e7c
added option to invert output data range (1.0 -- 0.0 instead of 0.0 -- 1.0)
2013-12-10 00:27:22 +00:00
Philip Eisenlohr
e4cea31a9d
small bug fix: options.error --> parser.error
2013-12-09 15:58:35 +00:00
Philip Eisenlohr
e2d4cc8b3d
fixed former nonsense definition of lab frame direction
2013-12-09 15:57:21 +00:00
Philip Eisenlohr
26690859bb
deal more gracefully with problematic user input.
2013-12-09 15:54:47 +00:00
Philip Eisenlohr
7fb1a3130a
now VTK 6 compatible
2013-12-09 15:41:29 +00:00
Philip Eisenlohr
c7ac903dc7
fixed missing comma in script list...
2013-12-09 15:37:36 +00:00
Philip Eisenlohr
090fca8683
deleted left-over debug statement
2013-11-26 20:24:40 +00:00
Philip Eisenlohr
d498eca242
deleted left-over debug statement
2013-11-26 20:22:52 +00:00
Philip Eisenlohr
b63d2eafe8
new scripts for:
...
-generating vtk point cloud from x,y,z ASCIItable data
-adding scalar values and color tuples from ASCIItable to vtk point cloud
-permuting data in ASCIItable columns (used to shuffle ordered grain indices)
2013-11-26 20:19:27 +00:00
Philip Eisenlohr
a45c7dbb62
new ASCIItable scripts to add
...
- quaternion and/or Euler representation of lattice orientation (given in rotation matrix, etc.)
- RGB color code of crystal direction in laboratory frame (matching closely the TSL-OIM scheme of inverse pole figures).
2013-11-25 19:11:02 +00:00
Philip Eisenlohr
0337b4f319
added script to produce VTK point cloud from seed file coordinates
2013-11-20 17:33:05 +00:00
Martin Diehl
feaccae652
set threshold for values treated as zero to 1.e-12 (was 1.e-15) to avoid flip in strain direction
2013-11-19 19:39:14 +00:00
Martin Diehl
e1e76cb257
fixed bug in OIMang_hex2cub.py, added test for correct number of microstructures (should be equal to header info)
2013-11-14 17:37:42 +00:00
Martin Diehl
d2cbca35b2
fixed syntax error in last commit
2013-11-13 12:51:48 +00:00
Martin Diehl
9b7007b937
added accidently deleted output of texturei again
2013-11-13 12:46:20 +00:00
Martin Diehl
103ae3cd0d
introduced on the fly copying for 2D microstructures in 3 dimension
2013-11-12 17:04:36 +00:00
Pratheek Shanthraj
fc8811c07d
switched to faster algorithm and removed buggy multi-threading
2013-11-11 13:00:31 +00:00
Martin Diehl
9ac8846e41
compiling with hdf5 is now working for DAMASK (if HDF5=ON) and for playground example in private
2013-11-07 12:52:36 +00:00
Philip Eisenlohr
463ecfd296
switched to damask.ASCIItable parsing, now aware of synonyms in geometry header, and speed-up by some orders of magnitude due to scipy.ndimage.filters use...
2013-11-04 14:12:10 +00:00
Martin Diehl
1ff98296b3
added output of default values, still does not run for my geometry
2013-10-25 11:58:03 +00:00
Philip Eisenlohr
5c1c0028e0
throw error if RCB segment list is not properly connected, i.e., complain about "dead ends" along the segment chain.
2013-10-24 18:55:16 +00:00
Philip Eisenlohr
705d23a5ed
fixed bug for non-present "microstructure" info in header.
2013-10-15 12:36:52 +00:00
Martin Diehl
47577e3d11
introduced synonym "grains" for deprecated "grains" to ensure backward compatibility
2013-10-15 09:50:20 +00:00
Philip Eisenlohr
6f467c0789
added "-fPIC" flag to make sure (independent of local f2py settings) that position independent code will be generated for the shared "code" object in DAMASK's python lib
2013-09-23 19:07:12 +00:00
Philip Eisenlohr
9280b0a4e2
fixed bug where configuration wrote floating point numbers for grain IDs and texture IDs.
2013-09-23 18:35:30 +00:00
Martin Diehl
1915215c6f
commented out not working use of vtk class
2013-09-20 11:27:11 +00:00
Martin Diehl
3eb8aa1362
checked for python3 compatibility:
...
use "print('foo')" instead of "print 'foo'"
and "except(error) as e" instead of "except error,e"
2013-09-14 10:52:02 +00:00
Martin Diehl
a17b85cba8
deleted wrong colormap script, was there twice. correct one (modified recently by Philip) is called perceptualUniformColormap
2013-09-11 08:15:05 +00:00
Martin Diehl
022696c8f3
fixed output to screen
2013-09-11 07:45:42 +00:00
Philip Eisenlohr
538a471246
updated $Id$ handling.
...
added (colored) my script's name reporting.
2013-09-09 14:12:00 +00:00
Philip Eisenlohr
ec6587e7f5
corrected help message
2013-09-09 14:11:16 +00:00
Philip Eisenlohr
f02ee16b3d
fixed missing comma in "pre" symlinking list.
2013-09-09 14:09:38 +00:00
Philip Eisenlohr
b3463b2ed6
added intel openmp library to linking list. (-liomp5 was necessary when using IMKL...)
2013-09-09 14:08:44 +00:00
Christoph Kords
7bbee3fe60
write size as exponential not float, otherwise small numbers get rounded (to zero)
2013-08-21 15:25:27 +00:00
Franz Roters
4f7cd76b29
renamed texture_rotation into texture_transformation
...
changed keyword for material.config to axes in line with geom_fromAng.py
former keyword rotation is still recognized for compatibility
2013-07-24 11:09:39 +00:00
Pratheek Shanthraj
d2ccc06aee
added line break between rotation and euler angle information for correct parsing of config file
2013-07-23 14:33:30 +00:00
Pratheek Shanthraj
c8cc397bf4
small bug fix
2013-07-23 12:40:26 +00:00
Christoph Kords
26df077c2a
translating scalar data that contain vector components to vector data
2013-07-22 08:24:04 +00:00
Martin Diehl
69b3359047
forgot in last commit
2013-07-18 13:31:40 +00:00
Martin Diehl
2201a73a46
added (?correct and working?) rotation for conversion from ANG and updated bold verbosity of all other scripts
2013-07-18 13:28:54 +00:00
Martin Diehl
a39005ef1c
added possibility to specify formula with array return type
...
added support for numpy
2013-07-16 21:48:23 +00:00
Philip Eisenlohr
7d5f1270d5
fixed nasty bug that prevented proper grid rescaling
2013-07-16 21:11:44 +00:00
Philip Eisenlohr
cb09c17fa2
simplified $Id treatment.
...
now reports own name in bold during runtime.
2013-07-10 09:15:42 +00:00
Philip Eisenlohr
31e0469b34
changed key "grains" to "microstructures" to be consistent with .geom description later.
2013-07-10 09:14:53 +00:00
Philip Eisenlohr
f75604c235
fixed bug in output of origin (reported size instead)
2013-07-10 09:13:21 +00:00
Philip Eisenlohr
fafa69b846
added possibility to have microstructure indices for seed points. Hence, multiple seed points can belong to the same final grain.
2013-07-10 09:12:00 +00:00
Philip Eisenlohr
0fa9f7dc22
can now show data for tables lacking column labels (use option --nolabels)
2013-07-08 11:56:16 +00:00
Pratheek Shanthraj
930e605afc
bug fixes and more optimizations
2013-07-03 00:48:21 +00:00
Pratheek Shanthraj
34ef7b0f34
now fully anisotropic grain growth possible by setting up the function "interfacialEnergy"
2013-07-02 04:32:32 +00:00
Pratheek Shanthraj
5ff8a7067e
fixed bug and re-reverted to faster version. added python multiprocessing functionality. polishing and renaming
2013-07-01 17:15:24 +00:00
Philip Eisenlohr
89cea68bc5
now using ASCIItable object and numpy array.repeat --> about 50x faster for large geoms (i.e. several mio voxels).
2013-06-30 19:11:16 +00:00
Philip Eisenlohr
39758f5c53
removed twoD option remnants
2013-06-30 19:09:01 +00:00
Philip Eisenlohr
1f891c544d
now using ASCIItable object (much faster file writing).
...
(temporarily) switched back to rev2496 logic...
changed to diffusion distance as command line argument (instead of taking sqrt(time))
2013-06-30 13:51:21 +00:00
Philip Eisenlohr
dd3d53e238
simplified grid/size synonyms treatment
2013-06-30 13:47:01 +00:00
Philip Eisenlohr
21c4447955
polishing and code unifications
2013-06-30 12:35:04 +00:00
Philip Eisenlohr
24fc14c2f3
fixed small syntax error introduced in last commit...
2013-06-30 00:46:52 +00:00
Philip Eisenlohr
77aa1c27b0
now based on damask.ASCIItable object
...
continue with next if one file is broken (used to stop!)
packing of already packed works now
overall speed improvement
standard unpacked output is 2D: use -1/--onedimensional for linear list
2013-06-30 00:39:48 +00:00
Philip Eisenlohr
fcc2736431
now based on damask.ASCIItable object
...
continue with next if one file is broken (used to stop!)
improved index substitution and adopted more numpy functions --> notably faster
2013-06-30 00:37:03 +00:00
Philip Eisenlohr
f204c38d4d
now based on damask.ASCIItable object
...
continue with next if one file is broken (used to stop!)
switched to numpy functions for geom reshaping and writing --> 10x faster
2013-06-30 00:34:16 +00:00
Philip Eisenlohr
7d6035dcfa
now based on damask.ASCIItable object
...
continue with next if one file is broken (used to stop!)
2013-06-30 00:31:44 +00:00
Philip Eisenlohr
da1b4ff05b
now based on damask.ASCIItable object
...
switched to numpy functions for grid generation --> about 20x faster.
2013-06-30 00:30:06 +00:00
Philip Eisenlohr
b2c8a7e345
removed tabs (and extended tab-awareness of pre-commit hook to python scripts)
2013-06-29 21:14:58 +00:00
Martin Diehl
e3a1e70542
started to use vtk class for writing results
2013-06-27 18:21:20 +00:00
Pratheek Shanthraj
4537720895
faster version for large number of grains. now performing diffusion on a small window around each grain where window around each grain is obtained cheaply
2013-06-27 16:57:14 +00:00
Philip Eisenlohr
034a6bc926
grid dimension can be changed by factor ("2x"), or left alone with number <= 0.
...
now understands packed geom structure.
2013-06-27 15:35:49 +00:00
Philip Eisenlohr
5f347648e1
now understands packed geom structure
2013-06-27 15:34:37 +00:00
Harsha Phukan
76171eec15
added possibility for factors---indicated by "x" at the end---and left-alone condition now comprises "0" as well as "negative numbers. understands packed structures, too.
2013-06-27 12:58:12 +00:00
Christoph Kords
13227dff0f
corrected calculation of origin
2013-06-22 14:13:29 +00:00
Philip Eisenlohr
8b5ba9f8f0
now understands packed geom-files (much faster processing...)
2013-06-21 21:19:14 +00:00
Philip Eisenlohr
4cf2e75dc1
justification of numbers done with space instead of "0"s
2013-06-21 21:18:10 +00:00
Philip Eisenlohr
e53c67f0e0
added black list for immutable microstructures.
...
now able to parse packed geom-files.
2013-06-21 21:17:03 +00:00
Philip Eisenlohr
3b4573301c
removed now obsolete Moore neighborhood array
2013-06-21 19:10:10 +00:00
Philip Eisenlohr
5d15f68914
added help description.
...
fixed bug for grain index (+1).
renamed some variables and added a few comments.
2013-06-21 19:08:20 +00:00
Pratheek Shanthraj
2e8756b724
faster version of smoother using the scipy gaussian filter to get the diffused microstructure and vectorized sharpening of the diffused microstructure
2013-06-21 16:59:49 +00:00
Philip Eisenlohr
45951e27c5
script to smooth out interface roughness in a (polycrystal) geom
2013-06-20 19:45:25 +00:00
Christoph Kords
0740845d81
allow coordinates to not be in consecutive columns
...
keep origin of original data set
2013-06-20 07:36:35 +00:00
Christoph Kords
e6499e1a39
renamed script in order to distinguish from "add" scripts that act on ascii tables
2013-06-13 09:05:30 +00:00
Ding Wang
920195809c
fixed bug in auto determination of size and grid
2013-06-11 10:11:14 +00:00
Martin Diehl
becacb675a
linear reconstruction no longer needed for odd resolution
2013-06-05 14:05:11 +00:00
Martin Diehl
e635b06270
last polishing on preprocessing scripts, documentation and scripts are all up to date.
...
added addSchmidfactors to post processing scripts
2013-06-04 12:56:57 +00:00
Philip Eisenlohr
32a16f9745
wildcard matching for column headings, e.g. "[159]_p" to extract only the diagonal elements (scalars) of stress, or "[1-9]_p" to extract all nine values.
...
fixed VTK file format problem where double precision floats were incorrectly interpreted because they were announced as "float" (now "double").
2013-05-29 10:24:00 +00:00
Martin Diehl
a21dd816c7
init reporting of constitutive_*.f90 had less/to much spaces, renamed label to LABEL because it is a parameter.
...
removed debug output of geom_fromEuclideanDistance.py
2013-05-28 17:31:55 +00:00
Christoph Kords
837574278e
removed (now) unused function for reading of configFile
2013-05-28 14:47:50 +00:00
Christoph Kords
10a32dc17b
use predefined maps in damask.Colormap class; no need for a colorMap config file anymore
2013-05-28 14:18:21 +00:00
Philip Eisenlohr
8fd590d7bd
added red--blue map
2013-05-24 07:41:44 +00:00
Christoph Kords
19dc95a915
now able to choose vector that is used for warpvector filter via option.dispLabel
2013-05-22 21:23:01 +00:00
Christoph Kords
75ee54146b
deleted unused function
2013-05-22 21:20:00 +00:00
Martin Diehl
b3a90a8a3b
last changes on preprocessing tools, only documentation needs to be done
2013-05-17 16:44:03 +00:00
Martin Diehl
17b81fda7c
still improving preprocessing scripts
2013-05-15 17:23:21 +00:00
Martin Diehl
53348db000
tested the modified scripts, all scripts generating geometry now named geom_from...
2013-05-15 16:02:38 +00:00
Martin Diehl
0b4a5cfa9b
geom_check is now using vtk class, other scripts stop execution in case of invalid grid or size
2013-05-14 21:09:37 +00:00
Martin Diehl
9093cf2072
polishing, unifying,simplifying
2013-05-14 17:51:53 +00:00
Martin Diehl
2acd737859
polishing, unifying,simplifying
2013-05-14 17:19:36 +00:00
Martin Diehl
563e74c832
now also using numpy
2013-05-14 17:00:41 +00:00
Martin Diehl
b2c50124b5
more improvements on structure, comments and header generation of pre processing tools
2013-05-13 13:10:31 +00:00
Martin Diehl
52af9aaabf
made spectral preprocessing more verbose (now reporting changes on header) and aware of new keywords, added coding information below shebang
2013-05-13 11:27:59 +00:00
Christoph Kords
deb2bd7dca
added option to only process ip or node based geometry/data
2013-05-13 10:06:40 +00:00
Christoph Kords
7f7cd0732d
improved visualization of script results
2013-05-13 09:36:19 +00:00
Christoph Kords
193c77f526
corrected prediction of computation time
2013-05-09 11:33:40 +00:00
Christoph Kords
ed1674ee1c
changed default value of eulerangles label
2013-05-09 11:32:34 +00:00
Christoph Kords
2d4cb6d128
first point on slice always starts at (0,0)
...
added option to visualize results
2013-05-08 15:59:51 +00:00
Christoph Kords
bd33169118
mistakenly committed table2ang in rev 2380, instead of vtk2ang. reverted changes in table2ang
2013-05-08 15:58:17 +00:00
Christoph Kords
ed9413a008
added simple output about progress
2013-05-07 14:32:38 +00:00
Christoph Kords
543cbf3a14
first point on slice always starts at (0,0)
2013-05-07 13:18:26 +00:00
Christoph Kords
c7f987a3c1
"unitlength" parameter, which determines the physical size of the mesh, now available as a global mesh variable "mesh_unitlength" and written to the .mesh file during init.
...
Hence, it is available to the marc_deformedGeometry.py script via "mesh_init_postprocessing()" and "mesh_get_unitlength()", so no need for setting the scaling of the displacement vectors explicitly through an option; now displacements and nodal positions are always consistent
2013-05-07 13:06:29 +00:00
Christoph Kords
9656d06fcc
- all length in nag file in micrometer
...
- "size" option replaced by "scale": uniform scaling of all length
- default normal in negative z-direction
- more output in verbose mode
- ang file numbering starts with 1
- positions in ang file in TSL, not lab frame
2013-05-07 12:57:34 +00:00
Christoph Kords
278198121d
only import vtk classes that were used
2013-05-06 16:55:44 +00:00
Christoph Kords
2371bd9f57
correct extension ".py" for "table2ang" and "vtk2ang"
2013-05-06 16:43:05 +00:00
Christoph Kords
f5482ffbf4
new script that generates ang files for slices through vtk data set
2013-05-06 16:37:54 +00:00
Christoph Kords
43647fc5e6
use datatype double instead of float for ouputs
2013-04-30 14:45:29 +00:00
Christoph Kords
12ca2c1931
added scaling option for displacements
2013-04-29 16:02:30 +00:00
Christoph Kords
9afaa9f4d0
set "line breaks" and "keywords" property
2013-04-29 09:24:07 +00:00
Christoph Kords
fbb8353bba
check if data set attribute is already present
2013-04-29 09:23:16 +00:00
Christoph Kords
cc72c0b17b
added two new scripts:
...
"marc_extractData" is a simple variant of the "postResult" script that extracts all data from a macro *.t16 file (quadratic elements not yet supported) and writes it into an asciitable
"addDataToGeometry" searches for corresponding *.txt and *.vtk file in a given directory and adds the data from the *.txt file as SCALARS to the *.vtk file
first script needed an additional function in mesh that returns the corresponding node of a given ip in a specific element
2013-04-28 20:56:17 +00:00
Martin Diehl
a003d14824
grid and size for vicinityOffset, small changes for other scripts
2013-04-25 16:51:32 +00:00
Martin Diehl
5d8664e230
updated to new keywords + more verbosity
2013-04-25 15:53:41 +00:00
Martin Diehl
7cbf107751
removed misplaced new line statement
2013-04-24 11:07:05 +00:00
Christoph Kords
650b7ef4ac
added python script that produces vtk files with the (node based and ip based) deformed mesh from marc output file
2013-04-23 18:30:56 +00:00
Pratheek Shanthraj
aa07656a90
exchanged final two occurrences of "grains" to "microstructures"
2013-04-18 13:53:13 +00:00
Martin Diehl
06c872d404
added libs.f90 to core module compilation, didn't work because kdtree2 wasn't there
2013-04-17 17:39:52 +00:00
Philip Eisenlohr
b572c71db0
fixed small bug in error reporting (missing column head complaint was broken...)
2013-04-16 20:10:17 +00:00
Martin Diehl
d971a32516
changed keywords, now also printing out altered size/grid/microstructures information
2013-04-16 18:00:14 +00:00
Martin Diehl
2ff0f1b93e
keywords update from resolution/dimension to grid/size
2013-04-12 14:13:32 +00:00
Martin Diehl
b4f67248a5
deleted two simple scripts used for debugging but with almost no use any more
2013-04-12 13:22:15 +00:00
Martin Diehl
7bcf1d6072
added ID information of creator script to header, changed keywords (resolution->grid, dimension->size)
2013-04-12 12:48:39 +00:00
Martin Diehl
4314ab236e
added ID information of creator script to header
2013-04-12 11:15:17 +00:00
Martin Diehl
6f0308844f
geom packing/unpacking won't throw away unknown header information any more (might contain comments)
2013-04-12 10:47:44 +00:00
Martin Diehl
0b1033d63a
switched to new keywords "grid" and "size", still reads the old "resolution" and "dimension" but writes the new ones
2013-04-12 10:27:05 +00:00
Martin Diehl
770712529d
one more bug fix related to scaling
2013-03-26 16:16:59 +00:00
Martin Diehl
ccef9d4f73
fixed scaling option
2013-03-26 14:18:29 +00:00
Philip Eisenlohr
5b96c1d62a
scaling of deformation gradient fluctuations now possible in x,y,z independently (give array).
2013-03-22 15:09:55 +00:00
Martin Diehl
cd86a80c2b
corrected handling of default value and cases where the deformation gradient is not f
2013-03-19 18:22:14 +00:00
Martin Diehl
43ec1d2051
added output of perceptual unfiform colormaps to GOM (DIC Aramis) format, deleted some old files in the documentation folder
2013-03-19 15:19:46 +00:00
Martin Diehl
757c3e5a04
fixed bug in averageDown and updated test
2013-03-13 16:23:02 +00:00
Martin Diehl
010d4c6e26
added script to make 27 periodic copies (3 in each dimension)
2013-03-11 13:40:30 +00:00
Martin Diehl
8a66693001
added script to convert data used by R.A. Lebensohn to spectral solver (geom, material.config) format
2013-03-05 16:31:17 +00:00
Philip Eisenlohr
0d7f1e8623
killed "margin" option, now same as all others: resolution and dimension in x and y.
...
can be non-square grid.
2013-02-27 18:43:53 +00:00
Philip Eisenlohr
565c532546
fixed bugs (grain index start, alpha orientation for elliptic osteons).
...
added option to rotate osteon relative to periodic box.
2013-02-27 10:56:30 +00:00
Pratheek Shanthraj
1cc990c7ac
osteon geom and config generator
2013-02-25 17:12:13 +00:00
Martin Diehl
831ad6d9c8
added leading zeros to names of microstructures and phases, spaces caused problems during initialization
2013-02-20 14:50:01 +00:00
Philip Eisenlohr
7461e13c1e
relocated spectral_quit() into driver code.
...
added (dummy) core_quit() for Python damask module.
2013-02-19 14:54:34 +00:00
Philip Eisenlohr
30024af6c2
polished string concatenations
2013-02-14 21:33:11 +00:00
Martin Diehl
d715ec769b
removed debug statements from symlink_Code.py, added autodetection for fortran compiler and disabled compiling on default
2013-02-13 18:45:49 +00:00
Christoph Kords
a90f15a3d3
corrected usage of "append" (which does not copy list items but only creates references)
2013-02-13 16:00:02 +00:00
Martin Diehl
cc9eb685fe
fixed wrong setting of coordinates in spectral solvers and removed old python scripts for setup of code and processing
2013-02-05 12:31:44 +00:00
Philip Eisenlohr
a7e7a857c3
readjusted color values to work nicely with Msh colorspace (as in ParaView)
2013-02-02 20:17:54 +00:00
Philip Eisenlohr
ac562f4b8b
changed internal color mapping to damask.Colormap class
2013-02-02 15:12:43 +00:00
Martin Diehl
b0263a8aab
added possibility to parse options for setup_code.sh and setup_processing.sh + other improvements in setup functionality
2013-02-01 12:21:56 +00:00
Martin Diehl
e74b5da19a
changed all remaining routines to fortran-fast arrays (geometry reconstruction etc.)
...
changed all remaining routines in f2py to more clever determination of array size (requires f2py >= 2.0)
enabled 3D visualize to work with odd resolution by switching to linear reconstruction
PLEASE NOTE: Redefinition of routines for f2py might cause trouble -> DELETE DAMASK_ROOT/lib/damask/core.so in this case
further changes: added pure statement where possible, polished, unified use of "Q" for "Quaternion" and reordered math to have similar routines together
2013-01-31 16:28:08 +00:00
Mahesh Balasubramaniam
55957dd99e
compile_CoreModule.py split seperately from the previous setup_processing.py
2013-01-29 15:33:20 +00:00
Mahesh Balasubramaniam
d713ef79d0
a simple shell script that runs compile_CoreModule.py and symLink_Processing.py in the said order
2013-01-29 15:32:43 +00:00
Mahesh Balasubramaniam
bd1f8044fb
symLink_Processing.py split seperately from the previous setup_processing.py
2013-01-29 15:31:57 +00:00
Philip Eisenlohr
963ff0c3ae
added support for tetrahedron element with 4 integration points (Marc ID 127)
2013-01-28 16:25:43 +00:00
Pratheek Shanthraj
e691ff1ea1
updated setup_processing and corrected descriptions for new scripts
2013-01-22 09:56:36 +00:00
Pratheek Shanthraj
a4abebfcbb
some potentially useful postprocessing scripts
2013-01-21 23:15:23 +00:00
Mahesh Balasubramaniam
4af855c755
added perceptualUniformColorMap.py to the list of post-processing files
2013-01-18 17:39:09 +00:00
Mahesh Balasubramaniam
5676330e93
parsing options and file handling for perceptually linear diverging and sequential colormaps
2013-01-18 17:15:30 +00:00
Philip Eisenlohr
e51779579e
removed (unsupported) "--geom" option.
2013-01-18 13:01:43 +00:00
Philip Eisenlohr
c8aaf8f6d4
added $id flags and specified line ending types when missing.
...
setup script missed ".py" extension for geom_euclideanDistance.
2013-01-18 12:59:26 +00:00
Pratheek Shanthraj
0e93d51fed
adopted same algorithm as in addEuclideanDistance
2013-01-18 11:42:27 +00:00
Pratheek Shanthraj
096204cd79
corrected missing file renaming of output
2013-01-18 11:39:53 +00:00
Mahesh Balasubramaniam
7ac7d1a657
new tool for creation of colormaps, now using proper classes
2013-01-15 18:24:10 +00:00
Mahesh Balasubramaniam
cd5197556b
sequential colormapping with options for desired color and type(increasing or decreasing) is now working
2013-01-04 19:50:39 +00:00
Mahesh Balasubramaniam
820b8eb2c1
put colormap related functions into library, renamed and added scripts for creation of colormaps
2013-01-04 13:57:36 +00:00
Mahesh Balasubramaniam
6ab79d5593
added options for parsing and the colormap. Customized colormap is written out as an xml file importable into paraview.
2013-01-04 12:04:05 +00:00
Mahesh Balasubramaniam
3242361c91
added a minor change to the string expression and the for loop.
2013-01-04 12:01:34 +00:00
Mahesh Balasubramaniam
7157e8f03c
changed some of the color-space conversion formulae.
2013-01-04 12:00:10 +00:00
Pratheek Shanthraj
a69aaa1315
Use scipy euclidean distance function instead of FMM (runs without skfmm
...
module installed)
2012-12-19 14:50:45 +00:00
Martin Diehl
260e4191a0
replaced tabs by spaces
2012-12-13 18:15:10 +00:00
Philip Eisenlohr
dfb791bcaf
only complain about missing Mentat release if needed...
2012-12-12 08:33:42 +00:00
Christoph Kords
34645a7222
write warning about missing Mentat release to stderr instead of stdout
2012-12-12 08:21:59 +00:00
Christoph Kords
93d822aaa1
symmetric colormap always with pure white in the middle
2012-12-11 16:50:34 +00:00
Pratheek Shanthraj
726d1173e5
polishing
2012-12-07 17:46:28 +00:00
Pratheek Shanthraj
c4ef2e5925
bug fixes
2012-12-07 17:41:50 +00:00
Pratheek Shanthraj
eaf7072bc1
Vectorized checking of neighbourhood for unique microstructure
...
(faster)
M addEuclideanDistance.py
2012-12-07 10:50:34 +00:00
Philip Eisenlohr
89867a198c
forgot to adopt addEuclideanDistance into the auto-setup...
2012-12-06 21:51:30 +00:00
Philip Eisenlohr
a37250eef4
script to add the Euclidean distance map from boundaries, triple lines, and quadruple points to an ASCIItable of a regular grid.
...
requires numpy, scipy, and skfmm...
2012-12-06 21:49:49 +00:00
Philip Eisenlohr
2d4cf7da74
conditions can handle string data.
...
use "#s#label#" format to indicate that column headed by "label" contains strings (not floats)...
2012-12-03 14:29:21 +00:00
Philip Eisenlohr
7d96bb7ce8
Add column(s) containing directional stiffness based on given cubic stiffness values C11, C12, and C44 (in consecutive columns)
2012-12-03 13:10:16 +00:00
Philip Eisenlohr
faa5f3c459
corrected severe bug in (non-logarithmic) strain calculations..!
2012-11-30 15:02:25 +00:00
Philip Eisenlohr
72159e867c
fixed buggy file handling for multiple input files
2012-11-30 11:03:53 +00:00
Philip Eisenlohr
74f62c891d
slightly safer file closing strategy
2012-11-30 08:38:52 +00:00
Philip Eisenlohr
9fb838fd28
changed switch from "sequential" to "column"
2012-11-30 08:29:34 +00:00
Philip Eisenlohr
1bd6bcfe3d
script to list info, labels, and/or data of an ASCIItable
2012-11-30 08:26:13 +00:00
Pratheek Shanthraj
e498719dcf
forgot to add to last commit
2012-11-29 21:57:07 +00:00
Pratheek Shanthraj
f63bb747c1
script to calculate the euclidean distance map (shortest distance to a grain boundary) of a given geom description using fast marching method (O(N logN) ops). grain boundary extracted using FD stencil.
2012-11-29 21:53:57 +00:00
Philip Eisenlohr
f446d4d87e
added wildcard matching ( "?", "*", "[(!)sequence_of_characters]" ) for ASCII table labels
2012-11-29 10:42:13 +00:00
Philip Eisenlohr
05507a6240
removed opening of unused _tmp file
2012-11-27 17:59:56 +00:00
Philip Eisenlohr
255af58434
post processing script to add eigenvalues and eigenvectors to tensorial data in ASCII tables.
2012-11-23 21:49:30 +00:00
Martin Diehl
78c22d8449
corrected label in case of divergence of tensor, now using correct notation for scalar: divFFT(data) instead of 1_divFFT(data)
2012-11-21 10:31:52 +00:00
Martin Diehl
b5945ced5e
changed counting of rows from pythonic (starting at 0) to human way (starting at 1)
2012-11-20 10:27:09 +00:00
Martin Diehl
b988caa6ba
added script to add deviatoric and hydrostatic part of a tensor to ASCII table
2012-11-14 10:46:51 +00:00
Martin Diehl
c3926efd93
introduced logic to use gfortran as default if ifort is not found
2012-11-13 19:12:00 +00:00
Philip Eisenlohr
1df9be233d
changed default threshold to 0.0
2012-11-08 17:08:41 +00:00
Philip Eisenlohr
682a98b704
forgot to alter name of 'geom_fromAng' in setup script...
2012-11-08 16:29:26 +00:00
Philip Eisenlohr
025d6c9048
renamed script to new convention
...
aligned output behavior to that of fromVoronoiTessellation, i.e., standard output is geom, --config gives associated material.config stud
2012-11-08 15:44:51 +00:00
Philip Eisenlohr
af2aa8500d
added option to specify crystallite index
2012-11-08 15:43:38 +00:00
Philip Eisenlohr
c4c27860b2
renamed script
...
updated to recent standard in io processing
introduced "primitive" bicontinuous structure in addition to "diamond" and "gyroid"
2012-11-07 16:52:10 +00:00
Philip Eisenlohr
7cf2024be3
fixed buggy parameter checking
2012-11-07 16:51:17 +00:00
Philip Eisenlohr
e11d107956
fixed reporting to STDOUT/STDERR
...
fixed buggy parameter checking
2012-11-07 16:49:47 +00:00
Philip Eisenlohr
cfc8823328
missed those three in former commit...
2012-11-05 21:28:01 +00:00
Philip Eisenlohr
1bd4262cfb
renaming of (loosely related) "spectral" scripts to (more tightly related) "geom" versions.
2012-11-05 21:19:12 +00:00
Martin Diehl
1fc59107fa
removed debug statement in averageDown.py, deleted obsolete spectral_iterationCount.py (new solver will report statistics anyway and most probably the current count does not work as the screen output was modified)
2012-10-31 10:06:11 +00:00
Philip Eisenlohr
afaf1f4e8c
made errors report to STDERR.
...
maxMicrostructure remains silent if not present.
2012-10-30 16:32:00 +00:00
Philip Eisenlohr
f2229883b5
exchanged "maxGrainCount" for "maxMicrostructure", since this is what it really means...
2012-10-30 16:15:10 +00:00
Philip Eisenlohr
ff164c9209
changed packing syntax from "N copies of x" to "N of x" (now consistent with IO.f90)
2012-10-30 15:53:46 +00:00
Philip Eisenlohr
2d36d52cf7
changed packing syntax from "N copies of x" to "N of x" (now consistent with geomPack and IO.f90)
2012-10-30 15:47:11 +00:00
Martin Diehl
b9aa50c59a
improved performance for large packing values
2012-10-26 12:59:43 +00:00
Martin Diehl
868984cb89
import of damask.core will not complain any more if done in setup_processing.py, however setup_processing.py will check if core.so exist after compilation and delete it before compilation
2012-10-25 07:55:27 +00:00
Philip Eisenlohr
17bfc3b284
added explanation of script purpose to its usage output (-h)
2012-10-18 07:24:44 +00:00
Martin Diehl
573c4702eb
fixed bug in averageDown.py and added test to check its features
2012-10-17 15:05:26 +00:00
Martin Diehl
dcff640926
fixed handling of given resolution and dimension
2012-10-17 10:04:13 +00:00
Martin Diehl
6c7affc43f
improved performance (hopefully)
...
now each new element gets a new ID, running from 1 to N for N elements
2012-10-16 18:06:02 +00:00
Philip Eisenlohr
1004d744f2
output speed-up by *show_table/*show_model masking
2012-10-05 21:49:33 +00:00
Martin Diehl
c377dae9a6
added option to create hexagonal grid (2D slices only, according to P. Konijnenbergs experience on 3D ang)
2012-10-05 17:25:54 +00:00
Martin Diehl
124451ac1a
added missing comment sign #
2012-10-04 08:42:13 +00:00
Martin Diehl
0a961bef55
made test for spectral packing/unpacking working again, small fixes in the 2 scripts
2012-09-28 14:49:07 +00:00
Martin Diehl
6d97a92913
further improvements on the conversion, seems to work quite good for the 2D case now
2012-09-28 12:10:10 +00:00
Martin Diehl
6619717baf
improved the conversion of tables to ang files
2012-09-26 12:20:14 +00:00
Philip Eisenlohr
5dbbb56460
fixed bug in 2D output format alignment.
2012-09-13 12:28:21 +00:00
Martin Diehl
77b2eef269
corrected wrong compiler option for gfortran in setup and updated naming scheme
2012-09-13 12:20:00 +00:00
Philip Eisenlohr
b76fee325b
script to shift (physical) origin of geometry file and/or shift microstructure indices by fixed amount and substitute individual indices by other ones.
2012-09-13 10:12:00 +00:00
Philip Eisenlohr
66e38606f0
syntax errors in one file terminated the script. now continues with next input...
2012-09-13 10:09:54 +00:00
Philip Eisenlohr
1c0649e17a
syntax errors in one file terminated the script. now continues with next input...
2012-09-13 10:08:57 +00:00
Philip Eisenlohr
8078585ce8
removed two left-over debug statements
2012-09-13 08:46:18 +00:00
Philip Eisenlohr
3d14c5b234
functionality now subsumed into geomCanvas
2012-09-13 07:58:29 +00:00
Philip Eisenlohr
4263191423
functionality now subsumed into geomCanvas
2012-09-13 07:57:57 +00:00
Philip Eisenlohr
1fe202fd90
added $ID and line endings.
2012-09-13 07:56:45 +00:00
Philip Eisenlohr
4f6e0eda32
splitter geom-file un/packing into two separate scripts.
2012-09-05 15:15:11 +00:00
Philip Eisenlohr
dc55e30cf1
added "startingIncrement" to spectralOut result interpretation
2012-09-05 15:14:36 +00:00
Martin Diehl
b7dc9f9944
renamed spectral_buildElements.py to nodesFromCentroids.py and added first simple version of an ascii table to ang converter
2012-08-30 17:01:46 +00:00
Martin Diehl
73349d02f5
merged precision info into the file prec.f90 and removed prec_single.f90
...
precision information is now parsed as a makro, defined by the compiler, eg. -DFLOAT=8 for 8 byte long floats or -- in case no values is given -- for the FEM wrapper by the interface files.
Please don't forget to run setup_code.py !!!!!!!!!!!
abaqus_v6.env is adjusted to specify the standard precision (float=8, int=4) and got some extra compilation options, some deprecated warning supressors are removed
Optional Marc modification will follow that allow automatic selection of suitable precision
2012-08-28 16:08:17 +00:00
Martin Diehl
3f99d2bb65
further improved prefix handling
2012-08-27 09:39:57 +00:00
Martin Diehl
96ba5ecae4
moved some more 'mesh related' functions for post processing from math.f90 to mesh.f90
...
f2py functions remaining in math.f90 now uses assumed size arrays in order to have simpler interfaces. This is only working with python 2.7!
changed python pre- and postprocessing scripts.
If you encounter any problems whith core modules, try to remove the old core.so in the lib/damask
2012-08-27 08:04:47 +00:00
Mahesh Balasubramaniam
975c3437ac
added possibility to use comma in functions, to prevent splitting substituted by ';'. Eg. round(4.021,1) becomes round(4.021;1) in command line call
2012-08-22 17:47:34 +00:00
Christoph Kords
4cfc302cdd
put prefix in front of the filename, not the directory name
2012-08-03 13:14:51 +00:00
Mahesh Balasubramaniam
3d7bc40520
added output of defaults for mesh, points, and box to help
2012-08-02 13:22:57 +00:00
Martin Diehl
a94b089aaa
removed old fortran brute force based tessellation
2012-07-26 09:07:24 +00:00
Martin Diehl
13caf2d389
made linear shape reconstruction working again, pretty similar results like corrected FFT reconstruction
2012-07-18 18:39:59 +00:00
Martin Diehl
95d292b286
2012-07-18 12:31:07 +00:00
Martin Diehl
117d06404d
cleaned up the script for setting up the postprocessing tools
2012-07-17 13:23:39 +00:00
Philip Eisenlohr
b30584b8d7
added "()" to file.close command
2012-07-03 12:33:11 +00:00
Philip Eisenlohr
783e1b50e2
condensed info parsing.
...
added info to report new origin of grid (based on --offset).
2012-06-26 18:08:50 +00:00
Philip Eisenlohr
fd3d592333
added capability to respect "origin" information in header
2012-06-26 18:07:38 +00:00
Philip Eisenlohr
cd04f990c5
added $id$ property and LF ending
2012-06-26 17:20:16 +00:00
Philip Eisenlohr
9041c5de39
fixed help texts
...
killed full number range output option (use spectral_geomPack if needed)
2012-06-26 14:41:25 +00:00
Martin Diehl
2b5ff6a456
2 small corrections for header of geom file
2012-06-26 10:41:22 +00:00
Martin Diehl
9b76b47ef9
added missing extension causing invalid symlinking
2012-06-26 10:25:39 +00:00
Martin Diehl
baacbe3b11
added ifort as standard compiler, compilation is now done in DAMASK_ROOT
2012-06-25 09:06:09 +00:00
Pratheek Shanthraj
77ee33ec1f
script to changes the (three-dimensional) canvas of a spectral geometry description
2012-06-21 12:57:14 +00:00
Philip Eisenlohr
06bfce0cd3
forgot to add the updated spectral_geomMultiply...
2012-06-20 17:06:28 +00:00
Philip Eisenlohr
01a9290567
deleted old incarnation...
...
new script follows established option parsing.
can rescale (increase only) the number of grid points in any dimension (with or without concurrent dimension scaling).
2012-06-20 16:00:48 +00:00
Philip Eisenlohr
1105824562
new option to not rescale patch (set size = 0)
...
added "3 header" to file output
will now extrude for spectral grids
2012-06-20 15:58:43 +00:00
Philip Eisenlohr
925759000c
added option to select data separation character from a choice of:
...
newline
tab (default)
space
2012-06-19 16:00:59 +00:00
Philip Eisenlohr
376ec2cd94
add option to output double, triple, and quadruple scalars
2012-06-19 15:30:16 +00:00
Krishna Komerla
c36a73c142
added include path for library files
2012-06-18 12:18:06 +00:00
Martin Diehl
a02dc204cc
added identifier for spectral solver when compiling post processing tools to setup/setup_processing.py
...
test with intel compiler now uses ikml
2012-06-13 17:45:18 +00:00
Philip Eisenlohr
dfc8606207
boundary conditions now consider patch dimension along pulling direction (used to be orthogonal to that..!)
2012-06-13 09:28:59 +00:00
Taymor El Achkar
98b790004a
Adding Second Piola-Kirchhoff data Coloumns (addPK2).
...
Integrating Stress-Strain table Data numerically (integrate.py).
2012-06-12 14:09:16 +00:00
Taymor El Achkar
1c427e8642
loop corrected
2012-05-14 07:58:21 +00:00
Taymor El Achkar
542768d712
bug fixed
2012-05-11 08:36:42 +00:00
Taymor El Achkar
c962452cda
python version of voronoi_tessellation.f90 generating geom file and material_config file (using kd_tree nearest neighbor search)
2012-05-10 16:42:07 +00:00
Krishna Komerla
c752dd5474
regridding is now working, changed the subroutine into a function
...
changed order of arrays in nearest neighbor search to make it fortran fast
constitutive.f90 and homogenization.f90 write state size out during initialization
setup/setup_processing.py is using byterecl to be compatible with binary files written out by solver
2012-05-08 14:57:06 +00:00
Philip Eisenlohr
34ef08c762
added unique naming of output file
2012-05-07 20:36:58 +00:00
Philip Eisenlohr
a84838d3ba
removed erroneous print statements (leftover from debugging)
2012-05-07 19:28:21 +00:00
Philip Eisenlohr
c9e17319ec
now with correct ID and LF line endings... ;-)
2012-05-07 19:11:46 +00:00
Philip Eisenlohr
361b7ad398
new script to generate a twoD probability density map from ASCIItable data
2012-05-07 19:09:11 +00:00
Philip Eisenlohr
c2954a2b33
now all heading labels squeeze out whitespace from their name.
2012-05-05 18:43:48 +00:00
Martin Diehl
b4775249e8
corrected standard check to make f2py working with gfortran
2012-05-03 17:12:36 +00:00
Taymor El Achkar
0cb983606f
spectral_geomPack is now formatting depending on necessary digits (via additional header information)
2012-05-02 13:44:12 +00:00
Philip Eisenlohr
28e9b483ad
corrected wrong byte offset when reading thru 2^31-1-8 four-byte limit
2012-05-01 22:42:45 +00:00
Philip Eisenlohr
b87b2160e7
fixed bug occurring for one item lines.
...
shortened logic here and there.
2012-04-25 13:53:56 +00:00
Martin Diehl
99f2b8603a
new script for reconstruction of elements from F/IP(spectral_buildElements.py), corrected spectral_randomSeeding.py, made post/postResults.py aware of additional header/footer for file positions larger than 2**31-1
2012-04-24 15:09:20 +00:00
Taymor El Achkar
f74b16051b
autodetection of line length for geomPack, updated description for both files
2012-04-24 11:31:18 +00:00
Taymor El Achkar
14356bf35e
new pre processing script for interpretation of "copies of" and "to" in geom files
2012-04-23 12:46:38 +00:00
Martin Diehl
335df4346f
deleted accidentally checked in file
2012-04-19 11:52:01 +00:00
Martin Diehl
31753be16f
updated setup/setup_processing.py with new files
...
added data_readLine(LINE) and data_skipLines(LINES) for ascii table
2012-04-18 11:42:57 +00:00
Martin Diehl
17f644b261
new scripts to add deformed configuration to ASCII table and for generation of layered 2D geometries (EBSD)
...
addCompatibilityMismatch.py is now using functions from ASCII table library
2012-04-18 09:58:59 +00:00
Martin Diehl
997933e495
corrected setup for new names of files
2012-04-16 15:01:29 +00:00
Krishna Komerla
f20cecd421
integrated subroutine for regridding into mesh.f90 and made it available for python
2012-04-10 15:15:46 +00:00
Krishna Komerla
d638c563af
reworked python - fortran interfacing
2012-04-10 13:30:34 +00:00
Martin Diehl
a3b37356be
added svn flags
2012-03-31 12:42:49 +00:00
Martin Diehl
c29ae95af7
new version of AL spectral solver (seems to work, but still experimental)
...
new concept of DAMASK for Python: Now using also IO.f90, debug.f90 etc. instead of mimicing their necessary function. This needs DAMASK_python.f90 and DAMASK_python_interface.f90 (At the moment more or less copies of respective spectral files).
polished and renamed the scripts for converging ang files
renamed voronoi_randomSeeding.py to spectral_randomSeeding.py
2012-03-29 19:54:31 +00:00
Pratheek Shanthraj
30d38436c7
switched voronoi seeding to python
2012-03-29 16:41:23 +00:00
Martin Diehl
4a6cdcc2e2
moved and renamed tools for generating geom file from ang files. using python instead of c++ for hex2cub conversion
2012-03-27 17:47:39 +00:00
Martin Diehl
3816adac27
removed batch processing (easier done on command line) and changed interactive question for filename to cmd argument
2012-03-21 17:58:11 +00:00
Philip Eisenlohr
33ab391c14
added total increment column
2012-03-14 15:05:49 +00:00
Christoph Kords
ac5b6233e6
initialize lastIncrement to 1
2012-03-14 14:59:20 +00:00
Nan Jia
d2051e54a5
PBC meshing can work on 2D models
2012-03-14 13:40:22 +00:00
Christoph Kords
95a2ed3443
added ability to add "damask option" to input file
2012-03-13 14:08:09 +00:00
Philip Eisenlohr
9b17015b5a
added option for nodal quantity output (uses "linear" translation).
...
improved stability when requesting non-existing increments.
2012-03-05 15:22:10 +00:00
Christoph Kords
dc7234fd02
new option "--suffix" adds a suffix to the filename
2012-02-28 14:24:45 +00:00
Christoph Kords
10e93244c1
writing info to stdout instead of stderr
2012-02-28 13:21:59 +00:00
Philip Eisenlohr
fc40291f38
script to add a suffix to specified ASCIItable labels
2012-02-24 08:53:19 +00:00
Philip Eisenlohr
89176ae7f1
added "deleteInfo" to list of symLinks
2012-02-23 13:56:50 +00:00
Philip Eisenlohr
53d7076d05
remove the info part from ASCIItables
2012-02-23 13:53:50 +00:00
Philip Eisenlohr
a2b46c8a36
columns can be called by index
...
now pipe-aware...
2012-02-23 13:53:12 +00:00
Martin Diehl
d68a3d1869
added LF=UNIX to a bunch of files
2012-02-22 13:30:00 +00:00
Philip Eisenlohr
ff4c281ed2
fixed whitelist/blacklist behavior (blacking out overrides whitelisting)
...
now broken pipes stop script's outputting.
2012-02-16 18:47:07 +00:00
Philip Eisenlohr
a994b4bcc9
fixed problem when condition was empty
2012-02-16 18:00:40 +00:00
Martin Diehl
f2729255f8
changed name in install script, small corrections on regex
2012-02-16 15:15:43 +00:00
Philip Eisenlohr
1bad5bf3c7
removed --count option. introduced 'internal' column #_row_#. adopted polished column head identification developed in filterTable. wiki updated.
2012-02-16 11:56:16 +00:00