added ID information of creator script to header
This commit is contained in:
Martin Diehl
parent
6f0308844f
commit
4314ab236e
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@ -28,26 +28,26 @@ class extendableOption(Option):
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parser = OptionParser(option_class=extendableOption, usage='%prog options [file[s]]', description = """
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Generate geometry description and material configuration from EBSD data in given square-gridded 'ang' file.
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Dual phases can be discriminated based on threshold value in a given data column.
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Two phases can be discriminated based on threshold value in a given data column.
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""" + string.replace('$Id$','\n','\\n')
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)
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parser.add_option('--column', dest='column', type='int', \
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help='data column to discriminate phase 1 from 2 [%default]')
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help='data column to discriminate phase 1 from 2 [%default]')
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parser.add_option('-t','--threshold', dest='threshold', type='float', \
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help='threshold value to discriminate phase 1 from 2 [%default]')
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help='threshold value to discriminate phase 1 from 2 [%default]')
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parser.add_option('--homogenization', dest='homogenization', type='int', \
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help='homogenization index to be used [%default]')
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help='homogenization index to be used [%default]')
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parser.add_option('--phase', dest='phase', type='int', nargs = 2, \
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help='two phase indices to be used %default')
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help='phase indices to be used %default')
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parser.add_option('--crystallite', dest='crystallite', type='int', \
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help='crystallite index to be used [%default]')
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help='crystallite index to be used [%default]')
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parser.add_option('-c', '--configuration', dest='config', action='store_true', \
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help='output material configuration [%default]')
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parser.set_defaults(column = 1)
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parser.set_defaults(threshold = 0.0)
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help='output material configuration [%default]')
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parser.set_defaults(column = 11)
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parser.set_defaults(threshold = 0.5)
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parser.set_defaults(homogenization = 1)
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parser.set_defaults(phase = [1,2])
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parser.set_defaults(crystallite = 1)
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@ -81,7 +81,7 @@ for file in files:
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point = 0
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step = [0,0]
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resolution = [1,1]
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grid = [1,1]
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microstructure = ['<microstructure>']
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texture = ['<texture>']
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@ -89,11 +89,14 @@ for file in files:
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words = line.split()
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if words[0] == '#': # process initial comments block
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if len(words) > 2:
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if words[1] == 'HexGrid': file['croak'].write('The file has HexGrid format. Please first convert to SquareGrid...\n'); break
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if words[1] == 'XSTEP:': step[0] = float(words[2])
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if words[1] == 'YSTEP:': step[1] = float(words[2])
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if words[1] == 'NCOLS_ODD:': resolution[0] = int(words[2]); formatwidth = 1+int(math.log10(resolution[0]*resolution[1]))
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if words[1] == 'NROWS:': resolution[1] = int(words[2]); formatwidth = 1+int(math.log10(resolution[0]*resolution[1]))
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if words[1] == 'HexGrid':
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file['croak'].write('The file has HexGrid format. Please first convert to SquareGrid...\n'); break
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if words[1] == 'XSTEP:': step[0] = float(words[2])
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if words[1] == 'YSTEP:': step[1] = float(words[2])
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if words[1] == 'NCOLS_ODD:':
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grid[0] = int(words[2]); formatwidth = 1+int(math.log10(grid[0]*grid[1]))
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if words[1] == 'NROWS:':
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grid[1] = int(words[2]); formatwidth = 1+int(math.log10(grid[0]*grid[1]))
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else: # finished with comments block
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if options.config: # write configuration (line by line)
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point += 1
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@ -106,14 +109,22 @@ for file in files:
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'(gauss)\tphi1 %4.2f\tPhi %4.2f\tphi2 %4.2f\tscatter 0.0\tfraction 1.0\n'%tuple(map(lambda x: float(x)*180.0/math.pi, words[:3]))
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]
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else:
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file['output'].write("4 header\n" + \
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"resolution\ta %i\tb %i\tc 1\n"%(resolution[0],resolution[1]) + \
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"dimension\tx %g\ty %g\tz %g\n"%(step[0]*resolution[0],step[1]*resolution[1],min(step)) + \
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grid.append(1)
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file['output'].write("6 header\n" + \
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"$Id$ \n"
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"grid\ta %i\tb %i\tc 1\n"%(grid[0],grid[1]) + \
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"size\tx %g\ty %g\tz %g\n"%(step[0]*grid[0],step[1]*grid[1],min(step)) + \
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"origin\tx 0\ty 0\tz 0\n" + \
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"microstructures\t%i\n"%(grid[0]*grid[1]) + \
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"homogenization %i\n"%options.homogenization + \
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"1 to %i\n"%(resolution[0]*resolution[1]))
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"1 to %i\n"%(grid[0]*grid[1]))
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break
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file['croak'].write('grid a b c: %s\n'%(' x '.join(map(str,grid))) + \
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'size x y z: %s\n'%(' x '.join(map(str,[step[0]*grid[0],step[1]*grid[1],min(step)]))) + \
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'origin x y z: %s\n'%(' : '.join(map(str,[0.0,0.0,0.0]))) + \
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'microstructures: %i\n'%(grid[0]*grid[1]) + \
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'homogenization: %i\n'%options.homogenization)
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if options.config:
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file['output'].write('\n'.join(microstructure) + \
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'\n'.join(texture))
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@ -200,21 +200,13 @@ for file in files:
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if i+1 not in indices: missing += 1
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file['croak'].write({True:'all',False:'only'}[missing == 0] + ' %i grains mapped.\n'%(info['grains']-missing))
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new_header.append("grid\ta %i\tb %i\tc %i\n"%(
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info['grid'][0],
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info['grid'][1],
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info['grid'][2],))
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new_header.append("size\tx %f\ty %f\tz %f\n"%(
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info['size'][0],
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info['size'][1],
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info['size'][2],))
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new_header.append("origin\tx %f\ty %f\tz %f\n"%(
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info['origin'][0],
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info['origin'][1],
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info['origin'][2],))
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new_header.append("$Id$ \n")
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new_header.append("grid\ta %i\tb %i\tc %i\n"%(info['grid'][0],info['grid'][1],info['grid'][2],))
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new_header.append("size\tx %f\ty %f\tz %f\n"%(info['size'][0],info['size'][1],info['size'][2],))
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new_header.append("origin\tx %f\ty %f\tz %f\n"%(info['origin'][0],info['origin'][1],info['origin'][2],))
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new_header.append("microstructures\t%i\n"%(info['grains']-missing))
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new_header.append("homogenization\t%i\n"%info['homogenization'])
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file['output'].write('%i\theader\n'%(len(new_header)) + ''.join(new_header))
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for n in xrange(info['grid'][1:3].prod()): # loop over 2nd and 3rd size
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@ -74,7 +74,8 @@ seeds[1,:]=(numpy.mod(seedpoint// options.grid[0],options.grid[
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seeds[2,:]=(numpy.mod(seedpoint//(options.grid[1]*options.grid[0]),options.grid[2])\
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+numpy.random.random())/options.grid[2]
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print "4\theader"
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print "5\theader"
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print "$Id$ \n"
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print "grid\ta %i\tb %i\tc %i"%(options.grid[0],options.grid[1],options.grid[2],)
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print "grains\t%i"%options.N
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print "randomSeed\t%i"%(options.randomSeed)
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