made spectral preprocessing more verbose (now reporting changes on header) and aware of new keywords, added coding information below shebang
This commit is contained in:
Martin Diehl
parent
deb2bd7dca
commit
52af9aaabf
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@ -4,9 +4,9 @@
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import string,os,sys
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from optparse import OptionParser, Option
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# -----------------------------
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#-------------------------------------------------------------------------------------------------
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class extendableOption(Option):
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# -----------------------------
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#-------------------------------------------------------------------------------------------------
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# used for definition of new option parser action 'extend', which enables to take multiple option arguments
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# taken from online tutorial http://docs.python.org/library/optparse.html
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@ -23,10 +23,9 @@ class extendableOption(Option):
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Option.take_action(self, action, dest, opt, value, values, parser)
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# --------------------------------------------------------------------
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#--------------------------------------------------------------------------------------------------
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# MAIN
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# --------------------------------------------------------------------
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#--------------------------------------------------------------------------------------------------
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parser = OptionParser(option_class=extendableOption, usage='%prog options [file[s]]', description = """
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Converts ang files (EBSD Data) from hexagonal grid to a pixel grid
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@ -42,10 +41,9 @@ parser.set_defaults(columnX = 3)
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counterX = 0
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counterY = 0
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addPoints = -1 # No of doubled points (must be the same for each odd/even line, initializing with -1 make countin easy!)
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# ------------------------------------------ setup file handles ---------------------------------------
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addPoints = -1 # No of doubled points (must be the same for each odd/even line, initializing with -1 make countin easy!)
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#--- setup file handles ---------------------------------------------------------------------------
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files = []
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if filenames == []:
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files.append({'name':'STDIN', 'input':sys.stdin, 'output':sys.stdout})
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@ -55,8 +53,7 @@ else:
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files.append( {'name':name, 'input':open(name),'output':open(os.path.splitext(name)[0]\
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+'_cub'+os.path.splitext(name)[1], 'w')})
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# ------------------------------------------ loop over input files ---------------------------------------
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#--- loop over input files ------------------------------------------------------------------------
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for file in files:
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print file['name']
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x = 0
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@ -1,12 +1,13 @@
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#!/usr/bin/env python
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# -*- coding: UTF-8 no BOM -*-
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import os,re,sys,math,numpy,string,damask
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from scipy import ndimage
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from optparse import OptionParser, Option
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# -----------------------------
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#--------------------------------------------------------------------------------------------------
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class extendableOption(Option):
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# -----------------------------
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#--------------------------------------------------------------------------------------------------
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# used for definition of new option parser action 'extend', which enables to take multiple option arguments
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# taken from online tutorial http://docs.python.org/library/optparse.html
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@ -44,23 +45,25 @@ def periodic_3Dpad(array, rimdim=(1,1,1)):
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padded[p[0],p[1],p[2]] = array[spot[0],spot[1],spot[2]]
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return padded
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# --------------------------------------------------------------------
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#--------------------------------------------------------------------------------------------------
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# MAIN
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# --------------------------------------------------------------------
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#--------------------------------------------------------------------------------------------------
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identifiers = {
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'resolution': ['a','b','c'],
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'dimension': ['x','y','z'],
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'origin': ['x','y','z'],
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}
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mappings = {
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'resolution': lambda x: int(x),
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'dimension': lambda x: float(x),
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'origin': lambda x: float(x),
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'grid': ['a','b','c'],
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'size': ['x','y','z'],
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'origin': ['x','y','z'],
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}
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features = [ \
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{'aliens': 1, 'names': ['boundary','biplane'],},
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mappings = {
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'grid': lambda x: int(x),
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'size': lambda x: float(x),
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'origin': lambda x: float(x),
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'homogenization': lambda x: int(x),
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'microstructures': lambda x: int(x),
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}
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features = [
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{'aliens': 1, 'names': ['boundary, biplane'],},
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{'aliens': 2, 'names': ['tripleline',],},
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{'aliens': 3, 'names': ['quadruplepoint',],}
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]
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@ -113,12 +116,11 @@ boundaries, triple lines, and quadruple points.
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)
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parser.add_option('-t','--type', dest='type', action='extend', type='string', \
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help='feature type (%s)'%(', '.join(map(lambda x:', '.join(x['names']),features))))
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help='feature type (%s)'%(', '.join(map(lambda x:', '.join(x['names']),features))))
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parser.add_option('-n','--neighborhood', dest='neigborhood', action='store', type='string', \
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help='type of neighborhood (%s)'%(', '.join(neighborhoods.keys())), \
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metavar='<int>')
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help='type of neighborhood (%s) [neumann]'%(', '.join(neighborhoods.keys())))
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parser.add_option('-2', '--twodimensional', dest='twoD', action='store_true', \
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help='output geom file with two-dimensional data arrangement')
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help='output geom file with two-dimensional data arrangement [%default]')
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parser.set_defaults(type = [])
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parser.set_defaults(neighborhood = 'neumann')
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@ -133,14 +135,13 @@ if options.neighborhood not in neighborhoods:
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feature_list = []
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for i,feature in enumerate(features):
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for name in feature['names']:
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for type in options.type:
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if name.startswith(type):
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feature_list.append(i) # remember valid features
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for myType in options.type:
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if name.startswith(myType):
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feature_list.append(i) # remember valid features
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break
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print feature_list
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# ------------------------------------------ setup file handles ---------------------------------------
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#--- setup file handles ---------------------------------------------------------------------------
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files = []
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if filenames == []:
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files.append({'name':'STDIN',
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@ -157,18 +158,15 @@ else:
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'croak':sys.stdout,
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})
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# ------------------------------------------ loop over input files ---------------------------------------
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#--- loop over input files ------------------------------------------------------------------------
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for file in files:
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if file['name'] != 'STDIN': file['croak'].write(file['name']+'\n')
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# get labels by either read the first row, or - if keyword header is present - the last line of the header
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firstline = file['input'].readline()
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m = re.search('(\d+)\s*head', firstline.lower())
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if m:
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headerlines = int(m.group(1))
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headers = [firstline]+[file['input'].readline() for i in range(headerlines)]
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headers = [file['input'].readline() for i in range(headerlines)]
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else:
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headerlines = 1
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headers = firstline
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@ -176,15 +174,25 @@ for file in files:
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content = file['input'].readlines()
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file['input'].close()
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info = {'resolution': numpy.array([0,0,0]),
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'dimension': numpy.array([0.0,0.0,0.0]),
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'origin': numpy.array([0.0,0.0,0.0]),
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'homogenization': 1,
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#--- interpretate header --------------------------------------------------------------------------
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info = {
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'grid': numpy.array([0,0,0]),
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'size': numpy.array([0.0,0.0,0.0]),
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'origin': numpy.array([0.0,0.0,0.0]),
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'microstructures': 0,
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'homogenization': 0
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}
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newInfo = {
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'microstructures': 0,
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}
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new_header = []
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new_header.append('$Id$\n')
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for header in headers:
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headitems = map(str.lower,header.split())
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if headitems[0] == 'resolution': headitems[0] = 'grid'
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if headitems[0] == 'dimension': headitems[0] = 'size'
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if headitems[0] in mappings.keys():
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if headitems[0] in identifiers.keys():
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for i in xrange(len(identifiers[headitems[0]])):
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@ -192,44 +200,39 @@ for file in files:
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mappings[headitems[0]](headitems[headitems.index(identifiers[headitems[0]][i])+1])
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else:
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info[headitems[0]] = mappings[headitems[0]](headitems[1])
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else:
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new_header.append(header)
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if numpy.all(info['resolution'] == 0):
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file['croak'].write('no resolution info found.\n')
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if numpy.all(info['grid'] == 0):
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file['croak'].write('no grid info found.\n')
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continue
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if numpy.all(info['dimension'] == 0.0):
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file['croak'].write('no dimension info found.\n')
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if numpy.all(info['size'] == 0.0):
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file['croak'].write('no size info found.\n')
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continue
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file['croak'].write('resolution: %s\n'%(' x '.join(map(str,info['resolution']))) + \
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'dimension: %s\n'%(' x '.join(map(str,info['dimension']))) + \
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'origin: %s\n'%(' : '.join(map(str,info['origin']))) + \
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'homogenization: %i\n'%info['homogenization'])
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file['croak'].write('grid a b c: %s\n'%(' x '.join(map(str,info['grid']))) + \
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'size x y z: %s\n'%(' x '.join(map(str,info['size']))) + \
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'origin x y z: %s\n'%(' : '.join(map(str,info['origin']))) + \
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'homogenization: %i\n'%info['homogenization'] + \
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'microstructures: %i\n'%info['microstructures'])
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new_header.append("resolution\ta %i\tb %i\tc %i\n"%(
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info['resolution'][0],
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info['resolution'][1],
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info['resolution'][2],))
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new_header.append("dimension\tx %f\ty %f\tz %f\n"%(
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info['dimension'][0],
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info['dimension'][1],
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info['dimension'][2],))
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new_header.append("origin\tx %f\ty %f\tz %f\n"%(
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info['origin'][0],
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info['origin'][1],
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info['origin'][2],))
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new_header.append("grid\ta %i\tb %i\tc %i\n"%(info['grid'][0],info['grid'][1],info['grid'][2],))
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new_header.append("size\tx %f\ty %f\tz %f\n"%(info['size'][0],info['size'][1],info['size'][2],))
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new_header.append("origin\tx %f\ty %f\tz %f\n"%(info['origin'][0],info['origin'][1],info['origin'][2],))
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new_header.append("homogenization\t%i\n"%info['homogenization'])
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structure = numpy.zeros(info['resolution'],'i')
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#--- process input --------------------------------------------------------------------------------
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structure = numpy.zeros(info['grid'],'i')
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i = 0
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for line in content:
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for item in map(int,line.split()):
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structure[i%info['resolution'][0],
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(i/info['resolution'][0])%info['resolution'][1],
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i/info['resolution'][0] /info['resolution'][1]] = item
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structure[i%info['grid'][0],
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(i/info['grid'][0])%info['grid'][1],
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i/info['grid'][0] /info['grid'][1]] = item
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i += 1
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neighborhood = neighborhoods[options.neighborhood]
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convoluted = numpy.empty([len(neighborhood)]+list(info['resolution']+2),'i')
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convoluted = numpy.empty([len(neighborhood)]+list(info['grid']+2),'i')
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microstructure = periodic_3Dpad(structure)
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for i,p in enumerate(neighborhood):
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@ -241,11 +244,11 @@ for file in files:
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convoluted[i,:,:,:] = ndimage.convolve(microstructure,stencil)
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distance = numpy.ones((len(feature_list),info['resolution'][0],info['resolution'][1],info['resolution'][2]),'d')
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distance = numpy.ones((len(feature_list),info['grid'][0],info['grid'][1],info['grid'][2]),'d')
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convoluted = numpy.sort(convoluted,axis=0)
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uniques = numpy.zeros(info['resolution'])
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check = numpy.empty(info['resolution'])
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uniques = numpy.zeros(info['grid'])
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check = numpy.empty(info['grid'])
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check[:,:,:] = numpy.nan
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for i in xrange(len(neighborhood)):
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uniques += numpy.where(convoluted[i,1:-1,1:-1,1:-1] == check,0,1)
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@ -254,32 +257,30 @@ for file in files:
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distance[i,:,:,:] = numpy.where(uniques > features[feature_id]['aliens'],0.0,1.0)
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for i in xrange(len(feature_list)):
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distance[i,:,:,:] = ndimage.morphology.distance_transform_edt(distance[i,:,:,:])*[max(info['dimension']/info['resolution'])]*3
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distance[i,:,:,:] = ndimage.morphology.distance_transform_edt(distance[i,:,:,:])*\
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[max(info['size']/info['grid'])]*3
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for i,feature in enumerate(feature_list):
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formatwidth = int(math.floor(math.log10(distance[i,:,:,:].max())+1))
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# ------------------------------------------ assemble header ---------------------------------------
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newInfo['microstructures'] = int(math.ceil(distance[i,:,:,:].max()))
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formatwidth = int(math.floor(math.log10(distance[i,:,:,:].max())+1))
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output = '%i\theader\n'%(len(new_header))
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output += ''.join(new_header)
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#--- assemble header and report changes -----------------------------------------------------------
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output = '%i\theader\n'%(len(new_header)+1)
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output += ''.join(new_header)
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output += "microstructures\t%i\n"%newInfo['microstructures']
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file['croak'].write('\n'+features[i]['names'][0]+'\n')
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if (newInfo['microstructures'] != info['microstructures']):
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file['croak'].write('--> microstructures: %i\n'%newInfo['microstructures'])
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# ------------------------------------- regenerate texture information ----------------------------------
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for z in xrange(info['resolution'][2]):
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for y in xrange(info['resolution'][1]):
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output += {True:' ',False:'\n'}[options.twoD].join(map(lambda x: ('%%%ii'%formatwidth)%(round(x)), distance[i,:,y,z])) + '\n'
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# ------------------------------------------ output result ---------------------------------------
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file['output'][i].write(output)
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#--- write new data -------------------------------------------------------------------------------
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for z in xrange(info['grid'][2]):
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for y in xrange(info['grid'][1]):
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output += {True:' ',False:'\n'}[options.twoD].join(map(lambda x: \
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('%%%ii'%formatwidth)%(round(x)), distance[i,:,y,z])) + '\n'
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file['output'][i].write(output)
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if file['name'] != 'STDIN':
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file['output'][i].close()
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if file['name'] != 'STDIN':
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file['input'].close() # close input geom file
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if file['name'] != 'STDIN':
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file['output'][i].close()
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#--- output finalization --------------------------------------------------------------------------
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if file['name'] != 'STDIN':
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file['input'].close()
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@ -4,10 +4,9 @@
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import os,sys,string,re,math,numpy
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from optparse import OptionParser, OptionGroup, Option, SUPPRESS_HELP
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# -----------------------------
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#--------------------------------------------------------------------------------------------------
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class extendedOption(Option):
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# -----------------------------
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#--------------------------------------------------------------------------------------------------
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# used for definition of new option parser action 'extend', which enables to take multiple option arguments
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# taken from online tutorial http://docs.python.org/library/optparse.html
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@ -23,18 +22,18 @@ class extendedOption(Option):
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else:
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Option.take_action(self, action, dest, opt, value, values, parser)
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# ----------------------- MAIN -------------------------------
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#--------------------------------------------------------------------------------------------------
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# MAIN
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#--------------------------------------------------------------------------------------------------
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identifiers = {
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'resolution': ['a','b','c'],
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'dimension': ['x','y','z'],
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'origin': ['x','y','z'],
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'grid': ['a','b','c'],
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'size': ['x','y','z'],
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'origin': ['x','y','z'],
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}
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mappings = {
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'resolution': lambda x: int(x),
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'dimension': lambda x: float(x),
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'origin': lambda x: float(x),
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'grid': lambda x: int(x),
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'size': lambda x: float(x),
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'origin': lambda x: float(x),
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'homogenization': lambda x: int(x),
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}
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@ -61,11 +60,10 @@ parser.set_defaults(twoD = False)
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(options, filenames) = parser.parse_args()
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sub = {}
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for i in xrange(len(options.substitute)/2): # split substitution list into "from" -> "to"
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for i in xrange(len(options.substitute)/2): # split substitution list into "from" -> "to"
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sub[int(options.substitute[i*2])] = int(options.substitute[i*2+1])
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# ------------------------------------------ setup file handles ---------------------------------------
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#--- setup file handles ---------------------------------------------------------------------------
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files = []
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if filenames == []:
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files.append({'name':'STDIN',
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@ -82,18 +80,15 @@ else:
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'croak':sys.stdout,
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})
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# ------------------------------------------ loop over input files ---------------------------------------
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#--- loop over input files ------------------------------------------------------------------------
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for file in files:
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if file['name'] != 'STDIN': file['croak'].write(file['name']+'\n')
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# get labels by either read the first row, or - if keyword header is present - the last line of the header
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firstline = file['input'].readline()
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m = re.search('(\d+)\s*head', firstline.lower())
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if m:
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headerlines = int(m.group(1))
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headers = [firstline]+[file['input'].readline() for i in range(headerlines)]
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headers = [file['input'].readline() for i in range(headerlines)]
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else:
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headerlines = 1
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headers = firstline
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@ -101,15 +96,25 @@ for file in files:
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content = file['input'].readlines()
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file['input'].close()
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info = {'resolution': numpy.array([0,0,0]),
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'dimension': numpy.array([0.0,0.0,0.0]),
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'origin': numpy.array([0.0,0.0,0.0]),
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'homogenization': 1,
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#--- interpretate header --------------------------------------------------------------------------
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info = {
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'grid': numpy.array([0,0,0]),
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'size': numpy.array([0.0,0.0,0.0]),
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'origin': numpy.zeros(3,'d'),
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'microstructures': 0,
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'homogenization': 0
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}
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newInfo = {
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||||
'origin': numpy.zeros(3,'d'),
|
||||
'microstructures': 0,
|
||||
}
|
||||
new_header = []
|
||||
new_header.append('$Id$\n')
|
||||
for header in headers:
|
||||
headitems = map(str.lower,header.split())
|
||||
if headitems[0] == 'resolution': headitems[0] = 'grid'
|
||||
if headitems[0] == 'dimension': headitems[0] = 'size'
|
||||
if headitems[0] in mappings.keys():
|
||||
if headitems[0] in identifiers.keys():
|
||||
for i in xrange(len(identifiers[headitems[0]])):
|
||||
|
|
@ -117,67 +122,67 @@ for file in files:
|
|||
mappings[headitems[0]](headitems[headitems.index(identifiers[headitems[0]][i])+1])
|
||||
else:
|
||||
info[headitems[0]] = mappings[headitems[0]](headitems[1])
|
||||
else:
|
||||
new_header.append(header)
|
||||
|
||||
if numpy.all(info['resolution'] == 0):
|
||||
file['croak'].write('no resolution info found.\n')
|
||||
if numpy.all(info['grid'] == 0):
|
||||
file['croak'].write('no grid info found.\n')
|
||||
continue
|
||||
if numpy.all(info['dimension'] == 0.0):
|
||||
file['croak'].write('no dimension info found.\n')
|
||||
if numpy.all(info['size'] == 0.0):
|
||||
file['croak'].write('no size info found.\n')
|
||||
continue
|
||||
|
||||
file['croak'].write('resolution: %s\n'%(' x '.join(map(str,info['resolution']))) + \
|
||||
'dimension: %s\n'%(' x '.join(map(str,info['dimension']))) + \
|
||||
'origin: %s\n'%(' : '.join(map(str,info['origin']))) + \
|
||||
'homogenization: %i\n'%info['homogenization'])
|
||||
|
||||
new_header.append("resolution\ta %i\tb %i\tc %i\n"%(
|
||||
info['resolution'][0],
|
||||
info['resolution'][1],
|
||||
info['resolution'][2],))
|
||||
new_header.append("dimension\tx %f\ty %f\tz %f\n"%(
|
||||
info['dimension'][0],
|
||||
info['dimension'][1],
|
||||
info['dimension'][2]))
|
||||
new_header.append("origin\tx %f\ty %f\tz %f\n"%(
|
||||
info['origin'][0]+options.origin[0],
|
||||
info['origin'][1]+options.origin[1],
|
||||
info['origin'][2]+options.origin[2]))
|
||||
new_header.append("homogenization\t%i\n"%info['homogenization'])
|
||||
|
||||
# ------------------------------------------ assemble header ---------------------------------------
|
||||
|
||||
output = '%i\theader\n'%(len(new_header))
|
||||
output += ''.join(new_header)
|
||||
file['output'].write(output)
|
||||
file['croak'].write('grid a b c: %s\n'%(' x '.join(map(str,info['grid']))) + \
|
||||
'size x y z: %s\n'%(' x '.join(map(str,info['size']))) + \
|
||||
'origin x y z: %s\n'%(' : '.join(map(str,info['origin']))) + \
|
||||
'homogenization: %i\n'%info['homogenization'] + \
|
||||
'microstructures: %i\n\n'%info['microstructures'])
|
||||
|
||||
# ------------------------------------------ process input ---------------------------------------
|
||||
|
||||
N = info['resolution'][0]*info['resolution'][1]*info['resolution'][2]
|
||||
#--- process input --------------------------------------------------------------------------------
|
||||
N = info['grid'][0]*info['grid'][1]*info['grid'][2]
|
||||
microstructure = numpy.zeros(N,'i')
|
||||
|
||||
i = 0
|
||||
for line in content:
|
||||
d = map(int,line.split())
|
||||
s = len(d)
|
||||
microstructure[i:i+s] = d # read microstructure indices
|
||||
microstructure[i:i+s] = d # read microstructure indices
|
||||
i += s
|
||||
|
||||
for i in xrange(N):
|
||||
if microstructure[i] in sub: microstructure[i] = sub[microstructure[i]] # substitute microstructure indices
|
||||
if microstructure[i] in sub: microstructure[i] = sub[microstructure[i]] # substitute microstructure indices
|
||||
|
||||
microstructure += options.microstructure # shift microstructure indices
|
||||
|
||||
formatwidth = int(math.floor(math.log10(microstructure.max())+1))
|
||||
i = 0
|
||||
for z in xrange(info['resolution'][2]):
|
||||
for y in xrange(info['resolution'][1]):
|
||||
output = {True:' ',False:'\n'}[options.twoD].join(map(lambda x: ('%%%ii'%formatwidth)%x, microstructure[i:i+info['resolution'][0]])) + '\n'
|
||||
file['output'].write(output)
|
||||
i += info['resolution'][0]
|
||||
microstructure += options.microstructure # shift microstructure indices
|
||||
|
||||
formatwidth = int(math.floor(math.log10(microstructure.max())+1))
|
||||
|
||||
# ------------------------------------------ output finalization ---------------------------------------
|
||||
#--- assemble header and report changes -----------------------------------------------------------
|
||||
newInfo['origin'] = info['origin'] + options.origin
|
||||
newInfo['microstructures'] = microstructure.max()
|
||||
|
||||
if (any(newInfo['origin'] != info['origin'])):
|
||||
file['croak'].write('--> origin x y z: %s\n'%(' : '.join(map(str,newInfo['origin']))))
|
||||
if (newInfo['microstructures'] != info['microstructures']):
|
||||
file['croak'].write('--> microstructures: %i\n'%newInfo['microstructures'])
|
||||
|
||||
new_header.append("grid\ta %i\tb %i\tc %i\n"%(info['grid'][0],info['grid'][1],info['grid'][2],))
|
||||
new_header.append("size\tx %f\ty %f\tz %f\n"%(info['size'][0],info['size'][1],info['size'][2],))
|
||||
new_header.append("origin\tx %f\ty %f\tz %f\n"%(
|
||||
newInfo['origin'][0],newInfo['origin'][1],newInfo['origin'][2],))
|
||||
new_header.append("microstructures\t%i\n"%newInfo['microstructures'])
|
||||
new_header.append("homogenization\t%i\n"%info['homogenization'])
|
||||
file['output'].write('%i\theader\n'%(len(new_header))+''.join(new_header))
|
||||
|
||||
#--- write new data -------------------------------------------------------------------------------
|
||||
i = 0
|
||||
for z in xrange(info['grid'][2]):
|
||||
for y in xrange(info['grid'][1]):
|
||||
output = {True:' ',False:'\n'}[options.twoD].join(map(lambda x: ('%%%ii'%formatwidth)%x,
|
||||
microstructure[i:i+info['grid'][0]])) + '\n'
|
||||
file['output'].write(output)
|
||||
i += info['grid'][0]
|
||||
|
||||
#--- output finalization --------------------------------------------------------------------------
|
||||
if file['name'] != 'STDIN':
|
||||
file['output'].close()
|
||||
os.rename(file['name']+'_tmp',file['name'])
|
||||
|
|
|
|||
|
|
@ -1,4 +1,6 @@
|
|||
#!/usr/bin/env python
|
||||
# -*- coding: UTF-8 no BOM -*-
|
||||
|
||||
'''
|
||||
Writes meaningful labels to the marc input file (*.dat)
|
||||
based on the files
|
||||
|
|
|
|||
|
|
@ -1,4 +1,5 @@
|
|||
#!/usr/bin/env python
|
||||
# -*- coding: UTF-8 no BOM -*
|
||||
|
||||
import sys,os,pwd,math,re,string,numpy, damask
|
||||
from optparse import OptionParser
|
||||
|
|
@ -149,10 +150,9 @@ def servoLink():
|
|||
|
||||
return cmds
|
||||
|
||||
|
||||
|
||||
# ----------------------- MAIN -------------------------------
|
||||
|
||||
#--------------------------------------------------------------------------------------------------
|
||||
# MAIN
|
||||
#--------------------------------------------------------------------------------------------------
|
||||
parser = OptionParser(usage='%prog [options]', description = """
|
||||
Set up servo linking to achieve periodic boundary conditions for a regular hexahedral mesh presently opened in MSC.Mentat
|
||||
|
||||
|
|
|
|||
|
|
@ -1,12 +1,12 @@
|
|||
#!/usr/bin/env python
|
||||
# -*- coding: UTF-8 no BOM -*-
|
||||
|
||||
import os, sys, math, re, threading, time, string, damask
|
||||
from optparse import OptionParser, OptionGroup, Option, SUPPRESS_HELP
|
||||
|
||||
|
||||
# ----------------------- FUNCTIONS ----------------------------
|
||||
|
||||
#-------------------------------------------------------------------------------------------------
|
||||
def outMentat(cmd,locals):
|
||||
#-------------------------------------------------------------------------------------------------
|
||||
if cmd[0:3] == '(!)':
|
||||
exec(cmd[3:])
|
||||
elif cmd[0:3] == '(?)':
|
||||
|
|
@ -16,7 +16,9 @@ def outMentat(cmd,locals):
|
|||
py_send(cmd)
|
||||
return
|
||||
|
||||
#-------------------------------------------------------------------------------------------------
|
||||
def outStdout(cmd,locals):
|
||||
#-------------------------------------------------------------------------------------------------
|
||||
if cmd[0:3] == '(!)':
|
||||
exec(cmd[3:])
|
||||
elif cmd[0:3] == '(?)':
|
||||
|
|
@ -26,8 +28,9 @@ def outStdout(cmd,locals):
|
|||
print cmd
|
||||
return
|
||||
|
||||
|
||||
#-------------------------------------------------------------------------------------------------
|
||||
def output(cmds,locals,dest):
|
||||
#-------------------------------------------------------------------------------------------------
|
||||
for cmd in cmds:
|
||||
if isinstance(cmd,list):
|
||||
output(cmd,locals,dest)
|
||||
|
|
@ -40,9 +43,9 @@ def output(cmds,locals,dest):
|
|||
|
||||
|
||||
|
||||
#--------------------
|
||||
#-------------------------------------------------------------------------------------------------
|
||||
def init():
|
||||
#--------------------
|
||||
#-------------------------------------------------------------------------------------------------
|
||||
return ["*new_model yes",
|
||||
"*reset",
|
||||
"*select_clear",
|
||||
|
|
@ -56,9 +59,9 @@ def init():
|
|||
]
|
||||
|
||||
|
||||
#--------------------
|
||||
#-------------------------------------------------------------------------------------------------
|
||||
def mesh(r,d):
|
||||
#--------------------
|
||||
#-------------------------------------------------------------------------------------------------
|
||||
return [
|
||||
"*add_nodes",
|
||||
"%f %f %f"%(0.0,0.0,0.0),
|
||||
|
|
@ -88,9 +91,9 @@ def mesh(r,d):
|
|||
]
|
||||
|
||||
|
||||
#--------------------
|
||||
#-------------------------------------------------------------------------------------------------
|
||||
def material():
|
||||
#--------------------
|
||||
#-------------------------------------------------------------------------------------------------
|
||||
cmds = [\
|
||||
"*new_mater standard",
|
||||
"*mater_option general:state:solid",
|
||||
|
|
@ -100,7 +103,7 @@ def material():
|
|||
"*add_mater_elements",
|
||||
"all_existing",
|
||||
"*geometry_type mech_three_solid",
|
||||
# "*geometry_option red_integ_capacity:on", # see below: reduced integration with one IP gave trouble being always OUTDATED...
|
||||
# "*geometry_option red_integ_capacity:on", # see below: reduced integration with one IP gave trouble being always OUTDATED...
|
||||
"*add_geometry_elements",
|
||||
"all_existing",
|
||||
]
|
||||
|
|
@ -108,27 +111,27 @@ def material():
|
|||
return cmds
|
||||
|
||||
|
||||
#--------------------
|
||||
#-------------------------------------------------------------------------------------------------
|
||||
def geometry():
|
||||
#--------------------
|
||||
#-------------------------------------------------------------------------------------------------
|
||||
cmds = [\
|
||||
"*geometry_type mech_three_solid",
|
||||
# "*geometry_option red_integ_capacity:on",
|
||||
"*add_geometry_elements",
|
||||
"all_existing",
|
||||
"*element_type 7", # we are NOT using reduced integration (type 117) but opt for /elementhomogeneous/ in the respective phase description (material.config)
|
||||
"*element_type 7", # we are NOT using reduced integration (type 117) but opt for /elementhomogeneous/ in the respective phase description (material.config)
|
||||
"all_existing",
|
||||
]
|
||||
|
||||
return cmds
|
||||
|
||||
|
||||
#--------------------
|
||||
def initial_conditions(homogenization,grains):
|
||||
#--------------------
|
||||
#-------------------------------------------------------------------------------------------------
|
||||
def initial_conditions(homogenization,microstructures):
|
||||
#-------------------------------------------------------------------------------------------------
|
||||
elements = []
|
||||
element = 0
|
||||
for id in grains:
|
||||
for id in microstructures:
|
||||
element += 1
|
||||
if len(elements) < id:
|
||||
for i in range(id-len(elements)):
|
||||
|
|
@ -166,61 +169,62 @@ def initial_conditions(homogenization,grains):
|
|||
return cmds
|
||||
|
||||
|
||||
#--------------------
|
||||
#-------------------------------------------------------------------------------------------------
|
||||
def parse_geomFile(content,homog):
|
||||
#--------------------
|
||||
#-------------------------------------------------------------------------------------------------
|
||||
(skip,key) = content[0].split()[:2]
|
||||
if key[:4].lower() == 'head':
|
||||
skip = int(skip)+1
|
||||
else:
|
||||
skip = 0
|
||||
|
||||
res = [0,0,0]
|
||||
dim = [0.0,0.0,0.0]
|
||||
grid = [0,0,0]
|
||||
size = [0.0,0.0,0.0]
|
||||
homog = 0
|
||||
|
||||
for line in content[:skip]:
|
||||
data = line.split()
|
||||
if data[0].lower() == 'resolution':
|
||||
res = map(int,data[2:8:2])
|
||||
if data[0].lower() == 'dimension':
|
||||
dim = map(float,data[2:8:2])
|
||||
if data[0].lower() == 'grid' or data[0].lower() == 'resolution':
|
||||
grid = map(int,data[2:8:2])
|
||||
if data[0].lower() == 'size' or data[0].lower() == 'dimension':
|
||||
size = map(float,data[2:8:2])
|
||||
if data[0].lower() == 'homogenization':
|
||||
homog = int(data[1])
|
||||
|
||||
grains = []
|
||||
microstructures = []
|
||||
for line in content[skip:]:
|
||||
grains.append(int(line.split()[0]))
|
||||
microstructures.append(int(line.split()[0]))
|
||||
|
||||
return (res,dim,homog,grains)
|
||||
return (grid,size,homog,microstructures)
|
||||
|
||||
#--------------------
|
||||
#-------------------------------------------------------------------------------------------------
|
||||
def parse_spectralFile(content,homog):
|
||||
#--------------------
|
||||
#-------------------------------------------------------------------------------------------------
|
||||
|
||||
coords = [{},{},{}]
|
||||
maxBox = [-1.0e20,-1.0e20,-1.0e20]
|
||||
minBox = [ 1.0e20, 1.0e20, 1.0e20]
|
||||
dim = [0.0,0.0,0.0]
|
||||
res = [0,0,0]
|
||||
grains = []
|
||||
grid = [0.0,0.0,0.0]
|
||||
size = [0,0,0]
|
||||
microstructures = []
|
||||
|
||||
for line in content:
|
||||
data = line.split()[3:7]
|
||||
grains.append(int(data[3]))
|
||||
microstructures.append(int(data[3]))
|
||||
for i in range(3):
|
||||
maxBox[i] = max(maxBox[i],float(data[i]))
|
||||
minBox[i] = min(minBox[i],float(data[i]))
|
||||
coords[i][data[i]] = True
|
||||
|
||||
for i in range(3):
|
||||
res[i] = len(coords[i])
|
||||
dim[i] = (maxBox[i]-minBox[i])*res[i]/(res[i]-1.0)
|
||||
grid[i] = len(coords[i])
|
||||
size[i] = (maxBox[i]-minBox[i])*grid[i]/(grid[i]-1.0)
|
||||
|
||||
return (res,dim,homog,grains)
|
||||
|
||||
# ----------------------- MAIN -------------------------------
|
||||
return (grid,size,homog,microstructures)
|
||||
|
||||
#--------------------------------------------------------------------------------------------------
|
||||
# MAIN
|
||||
#--------------------------------------------------------------------------------------------------
|
||||
parser = OptionParser(usage='%prog [options] spectral.datafile', description = """
|
||||
Generate FE hexahedral mesh from spectral description file.
|
||||
|
||||
|
|
@ -231,18 +235,18 @@ spectral: phi1,Phi,phi2,x,y,z,id,phase.
|
|||
""" + string.replace('$Id$','\n','\\n')
|
||||
)
|
||||
parser.add_option("-p", "--port", type="int",\
|
||||
dest="port",\
|
||||
help="Mentat connection port")
|
||||
dest="port",\
|
||||
help="Mentat connection port")
|
||||
parser.add_option("-g", "--geom", action="store_const", const="geom",\
|
||||
dest="filetype",\
|
||||
help="file has 'geom' format")
|
||||
dest="filetype",\
|
||||
help="file has 'geom' format")
|
||||
parser.add_option("-s", "--spectral", action="store_const", const="spectral",\
|
||||
dest="filetype",\
|
||||
help="file has 'spectral' format")
|
||||
dest="filetype",\
|
||||
help="file has 'spectral' format (VPSC Lebensohn)")
|
||||
|
||||
parser.add_option("--homogenization", type="int",\
|
||||
dest="homogenization",\
|
||||
help="homogenization index from material.config (only required for spectral file type)")
|
||||
dest="homogenization",\
|
||||
help="homogenization index from material.config (only required for spectral file type)")
|
||||
|
||||
|
||||
parser.set_defaults(filetype = 'geom')
|
||||
|
|
@ -272,20 +276,20 @@ if options.filetype not in ['spectral','geom']:
|
|||
print '\nparsing %s...'%options.filetype,
|
||||
sys.stdout.flush()
|
||||
|
||||
(res,dim,homog,grains) = {\
|
||||
(grid,size,homog,microstructures) = {\
|
||||
'geom': parse_geomFile,
|
||||
'spectral': parse_spectralFile,
|
||||
}[options.filetype](content,options.homogenization)
|
||||
|
||||
print '%i grains in %s with resolution %s and homogenization %i\n'%(len(list(set(grains))),str(dim),str(res),homog)
|
||||
print '%i microstructures in %s with grid %s and homogenization %i\n'%(len(list(set(microstructures))),str(size),str(grid),homog)
|
||||
|
||||
|
||||
cmds = [\
|
||||
init(),
|
||||
mesh(res,dim),
|
||||
mesh(grid,size),
|
||||
material(),
|
||||
geometry(),
|
||||
initial_conditions(homog,grains),
|
||||
initial_conditions(homog,microstructures),
|
||||
'*identify_sets',
|
||||
'*redraw',
|
||||
]
|
||||
|
|
|
|||
|
|
@ -1,4 +1,5 @@
|
|||
#!/usr/bin/env python
|
||||
# -*- coding: UTF-8 no BOM -*-
|
||||
|
||||
import sys,os,math,re,string, damask
|
||||
from optparse import OptionParser, OptionGroup, Option, SUPPRESS_HELP
|
||||
|
|
|
|||
Loading…
Reference in New Issue