b13aa799c3
updated error message
2019-05-25 17:00:41 +02:00
c89d344236
polishing
2019-05-25 13:51:05 +02:00
2b7d95f800
was accidently commited
...
gives different results due to interpolation from scipy
2019-05-25 12:09:09 +02:00
c92969787a
geom Class was updated
2019-05-25 11:56:06 +02:00
94f85b7f33
better readable
2019-05-25 10:45:58 +02:00
fc1f65c34e
works for dtype='float'
2019-05-25 10:36:46 +02:00
875643c363
same style
2019-05-25 10:24:45 +02:00
17eb0d1b20
using new class
2019-05-25 08:48:44 +02:00
4788fc6046
making use of new class
...
@philip: 1D arrangement needed?
2019-05-25 08:37:02 +02:00
6c7f7c77da
specifying non-existing or invalid files is an user error
...
this is the standard behavior for common unix tools, no need to make an
exception here
2019-05-25 08:24:32 +02:00
cf374a04dc
using new class
2019-05-25 08:21:00 +02:00
420abfa162
use new class
2019-05-24 22:34:27 +02:00
eb13fbc0ce
streamlined geom-info reporting; added --float option to some scripts; hardened against NaN; "microstructures" now reports uniques not max
2019-05-23 13:03:24 -04:00
e6cec6ecbe
added option to reverse inside/outside of primitive body
2019-05-23 12:49:03 -04:00
339b86f784
bugfix + more verbose reporting
2019-05-16 11:44:03 +02:00
9f7fa5393a
fix for scalar datasets
2019-05-16 09:31:13 +02:00
4599d1c34e
does not match
...
node does not make sense, is weirdly numbered
2019-05-16 00:42:22 +02:00
3c0c0a2cd1
more flexible in selecting data
2019-05-16 00:27:06 +02:00
998789528c
Merge branch 'HDF5-out-homog-2' into 'development'
...
Hdf5 out homog 2
See merge request damask/DAMASK!78
2019-05-13 17:34:59 +02:00
feb1465803
Better to have actual increment num in output file
2019-05-08 17:31:18 +02:00
0cc2b1214d
store requested data in ASCII file
2019-05-07 15:18:12 +02:00
1eaf67ad82
store results in subdirectory
...
defaults to postProc
2019-05-07 13:30:05 +02:00
f65423fe9f
rudimentary postResults for HDF5 output
...
only meant for compatibility during transition
2019-05-05 10:09:23 +02:00
8a9baf6d78
preparing output of mech_homog to HDF5
2019-04-30 18:45:38 +02:00
d74599d39a
Merge branch 'HDF5-postprocessing' into 'development'
...
Hdf5 postprocessing
See merge request damask/DAMASK!72
2019-04-29 23:24:42 +02:00
6b7fd6b7ea
visualizing data from DADF5: first prototype
2019-04-18 11:58:17 +02:00
7177813710
adding data to geometry
2019-04-17 19:57:16 +02:00
8eb1a35dfb
first version of a library to parse HDF5
...
- preliminarly called DADF5 (DAMASK HDF5)
- script to write (empty undeformed) geometries is also added
2019-04-13 11:25:53 +02:00
0c6fde97f9
wrong positions for point visualization
...
- now the cell centers are at the centers of the cells for cell
visualization
2019-04-13 00:42:05 +02:00
ed7423a3d6
bug fixes
2019-03-10 08:16:01 +01:00
67619fa92a
consistent definition of axis angle
2019-03-09 20:18:28 +01:00
433281f71d
following Rowenhorst convention
2019-03-09 19:58:17 +01:00
0d08659b2a
general cleaning
2019-03-09 11:11:40 +01:00
60feb96afd
let vtk decide on the file extension
2019-03-09 11:11:40 +01:00
5ab8e50d09
consistent with reference paper
2019-03-08 19:07:19 +01:00
b84d4f1b6a
improved error handling/clearer messages
2019-03-05 10:58:57 +01:00
e030038b73
[skip ci] added --blank option to create fresh canvas (from nothing)
2019-02-27 19:37:38 -05:00
c706ca5ba3
no progress bars in quite mode
2019-02-26 21:22:49 -05:00
f3d2803443
addMises failed for single run of either --stress or --strain
2019-02-25 19:29:12 -05:00
2089726800
corrected output extension of vtk files to reflect binary format
2019-02-25 18:48:40 -05:00
e401c21266
dropped obsolete option --inplace from geom_check
2019-02-25 18:30:45 -05:00
e88182b007
improved converte, now with test
...
still needs to figure out how +P is handled
2019-02-24 14:39:34 +01:00
0d7fd587e3
direct translation from DREAM.3D to DAMASK geom
...
needs test
2019-02-24 12:59:10 +01:00
95be7ef938
directly convert to geom file + material config
2019-02-24 10:33:30 +01:00
903edcd429
do not patronize the user, rather give hints
2019-02-24 10:31:08 +01:00
d3ac3cc0f5
using new Orientation class
2019-02-24 08:34:20 +01:00
9dc8dff4b1
cleaning and adding compatibility layer
2019-02-23 22:35:04 +01:00
9fa2553af4
task for DREAM.3D if needed
...
pointwise takeover should not be a problem anymore as reading in takes
no time (at least in comparison to addGrainID)
2019-02-23 22:14:55 +01:00
a8e8b75cc0
use new rotation class
2019-02-23 22:13:24 +01:00
fff377de7f
initial simplification.
...
Should be able to generate from table containing either <microstructure>
or <texture> and <phase>
2019-02-23 22:06:31 +01:00
b3455c825e
transition to new orientation class
...
forward-backward conversion quite stable
2019-02-23 21:49:05 +01:00
e4bb61c9d9
transition to new orientation class/DREAM.3D
2019-02-23 11:37:09 +01:00
93ae5cbd07
Merge remote-tracking branch 'origin/development' into 10-consistent-orientation-conversions-3
2019-02-22 23:05:36 +01:00
3bec76e781
can now deal with 1x1x1 geoms
2019-02-19 12:06:46 -05:00
25727bfa52
using CamelCase
2019-02-19 10:32:18 +01:00
43a451b2e1
inplace not useful
...
use shell script if you want to keep an backup of your old data
2019-02-18 14:36:04 +01:00
27ebe1f665
improved documentation
2019-02-17 08:17:40 +01:00
5c20609e81
more verbose help, drop support for really old vtk
2019-02-16 22:20:44 +01:00
802ef6fe5c
more precise help
2019-02-16 18:25:41 +01:00
c6781e415a
using default notation for vector access
2019-02-16 18:23:00 +01:00
0b1bfdfd4e
was only working with python2
2019-02-16 18:17:05 +01:00
29fc53fdcb
more specific about invocation
2019-02-16 17:41:56 +01:00
fa003e8077
small adjustments for autodoc
2019-02-16 15:26:21 +01:00
4ce151c967
camel casing (easer for foswiki)
2019-02-15 23:22:51 +01:00
0cc4e582e4
Merge branch 'development' into 26_autodoc-2
2019-02-15 20:47:14 +01:00
566099ad81
automatic documentation for some post processing scripts
2019-02-15 18:52:47 +01:00
dc133344b6
[skip ci] migrated to python3 compatibility
2019-02-14 18:44:06 -05:00
d58c3008ae
fixed too long line in addLinked
2019-02-14 18:31:22 -05:00
742d58cfce
added ASCIItable tests to CI pipelining
2019-02-14 18:24:09 -05:00
c4cb35891c
all fine with python3
2019-02-14 22:56:39 +01:00
889cfc8ba0
vtk script only work with python3 on new testing
2019-02-14 01:39:54 +01:00
217024667b
forgotten comma
2019-02-12 11:30:43 +01:00
608852df83
rotation paper has angle as last component
2019-02-12 10:58:38 +01:00
7da8980cc0
bugfixes: wrong shape, wrong conversion
2019-02-12 09:04:35 +01:00
336a80091f
rodrigues is 4-vector with rotation being the last component
...
established a single source of truth for length
2019-02-12 08:59:26 +01:00
97ac437686
more user friendly constructors
2019-02-12 08:14:27 +01:00
ef3fc0b58a
bugfix: wrong array indexing
...
rotation of meshgrid tuple implemented
2019-02-12 07:42:46 +01:00
48b0307fab
using new rotation class
...
cannot rotate matrices (3,3) and (3,3,3,3) at the moment
2019-02-12 00:27:13 +01:00
74956c0290
avoid error for empty "name"
2019-01-23 20:59:07 -05:00
da115ca9d4
probably never used and outdated (python2.7)
...
doing the same conversion via DREAM.3D will be available soon
2019-01-16 17:51:37 +01:00
c5dabbb68f
correct comment sign
...
the # indicates the end of a list
2019-01-09 16:31:00 +01:00
0dca8d2740
compatible to python 3 and mentat >= 2017
2019-01-09 16:28:21 +01:00
1192f16582
Merge remote-tracking branch 'origin/development' into 56-parallel-hdf5
2019-01-06 20:56:36 +01:00
7768c5874b
simpler interface for progress bar
2019-01-05 10:41:49 +01:00
c00d00c219
Merge remote-tracking branch 'origin/development' into misc-improvements
2019-01-05 09:22:41 +01:00
3c5df0a4a4
[skip ci] viewTable acknowledges requested output type(s)
2019-01-04 16:34:21 -05:00
bcd4288f1e
[skip ci] groupTable according to unique values in more than one column
2019-01-03 18:25:28 -05:00
b5d62c8e29
[skip ci] print estimated remaining processing time for postResults
2019-01-03 11:31:04 -05:00
835e3f95a5
[skip ci] was not used
2018-12-31 08:05:56 +01:00
6f40989465
order was randomized when creating dict
2018-12-31 07:18:45 +01:00
a992b8b1f5
random order caused test to fail
...
rather a workaround, but since HDF5 is coming...
2018-12-30 11:41:22 +01:00
9bdd4d1d68
added <!skip> line to stop config parser from trying to interpret rest of geom description---huge speedup!!
2018-12-20 17:22:29 -05:00
25a80723c0
numpy interface changed to be strict about 2D array shape in histogram
2018-12-20 17:14:55 -05:00
1ef82e351b
Merge branch 'orientationClass_with_negative_P' into development
2018-12-20 20:43:00 +01:00
7df6dfbf3f
renamed "showTable" to "viewTable" to avoid clashing with astropy.table module
2018-12-18 15:10:26 -05:00
5d7f930592
math.isclose does not exist for older versions
...
np.isclose does the same
2018-12-17 20:04:16 +01:00
3bab08fdeb
Merge branch 'development' into 56-parallel-hdf5
2018-12-12 07:46:02 +01:00
1f2fbbee21
consistent name
2018-12-10 09:38:57 +01:00
767650e002
more general option + improved descriptions
...
hopefully more user friendly
2018-12-10 09:27:39 +01:00
d219842ad8
[skip ci] consistent tolerances
2018-12-09 20:19:33 +01:00
60686fb72c
[skip ci] improved reporting
2018-12-09 18:05:37 +01:00
bc04b83d8a
no reason for using python2.7
2018-12-09 14:09:26 +01:00
08ac49fac0
line too long
2018-12-09 13:21:56 +01:00
130fac21c6
cleaning
2018-12-09 13:15:59 +01:00
d43dfa569b
lines too long
2018-12-09 12:37:27 +01:00
65165ffc5e
assumed wrong type
...
quaternion should have lenght one
2018-12-09 12:35:32 +01:00
697d97cd38
cleaned
...
legacy format was for pre-MPI output where the extra bytes at start and
end of a chunk (Fortran out) had to be handled manually
2018-12-09 12:30:07 +01:00
5054291557
python3 compatible status message
2018-12-09 12:25:31 +01:00
741032339e
time/math/datatype are not used/defined any more
2018-12-09 11:05:35 +01:00
aefa006d09
simplified
...
assume quaternions as input
2018-12-09 10:53:53 +01:00
213e31ff87
string was split into letters
2018-12-09 10:53:25 +01:00
d9b47f09bc
modernized
...
split arguments logically, assume 3-vector for coordinates
2018-12-09 10:52:37 +01:00
7eaea64d09
python3 compatible
...
hope that the new bar causes less trouble than the background message
2018-12-09 09:08:33 +01:00
6b73840853
works with python3
2018-12-09 08:07:40 +01:00
83a3628765
bug fixes
2018-12-09 07:58:42 +01:00
d145b257aa
new version of numpy complain about overlong range argument
2018-12-09 07:57:05 +01:00
4130cbcffa
simplified
...
- always use quaternion as input for orientation
- addAPS34IDEstrainCoords uses table functionality
- rotateData can figure out whether input is vector or tensor
2018-12-09 07:10:31 +01:00
3f8726464d
addOrientations now checks its input for convention conformity
2018-12-08 13:22:22 -05:00
eaf2c77903
Merge branch 'orientationClass_with_negative_P' of magit1.mpie.de:damask/DAMASK into orientationClass_with_negative_P
2018-12-07 22:07:22 -05:00
ac45a9e2d3
more output options, frame input changed to "lab expressed in crystal"
2018-12-07 22:03:14 -05:00
e8f4dc4c9f
Merge branch 'orientationClass_with_negative_P' into development
2018-12-06 07:26:08 +01:00
ee7e4ee0d9
python3 has different encoding syntax
2018-12-06 06:27:07 +01:00
a6d4c73de0
added list of map and introduced "quat" keyword in quaternion init
2018-12-05 10:20:05 -05:00
c0f7ae2798
updated scripts that still used formerly valid object properties of quaternions
2018-12-05 09:07:29 -05:00
1d7172c971
adopted more intutitive alternative of P=-1 from Rowenhorst_etal2015
2018-12-04 17:05:35 -05:00
8f26fc9358
Merge remote-tracking branch 'origin/development' into 56-parallel-hdf5
2018-12-04 22:34:29 +01:00
7c1e2e256c
os.urandom returns byte, not string in python3
2018-11-24 10:07:47 +01:00
c0ad496764
eigenvalue solver seems to depent on python version
2018-11-22 23:13:49 +01:00
76accdeaf2
all orientations are passive now
...
.conjugated() not needed anymore.
Rest is polishing
2018-11-22 18:45:01 +01:00
9b82b7fadd
removed obsolete keyword "Bunge" from asEulers() method
2018-11-22 11:51:53 -05:00
ba5b623f14
Merge branch 'development' into improved-HDF5
2018-11-18 19:44:36 +01:00
fcb14f6099
was never used
2018-11-18 12:04:08 +01:00
d53b01ab56
also works for python3
2018-11-18 08:04:52 +01:00
8ee2de61ea
map returns no list any more
2018-11-17 12:12:20 +01:00
257d9d5350
needs to be list
2018-11-17 12:12:20 +01:00
44bd85a041
not working for python3, trying
2018-11-17 12:12:20 +01:00
e1a730e96b
python3 compatible integer division and argument sequence in agreement with documentation
2018-11-17 09:58:54 +01:00
015e819d4c
python3 does not allow to compare tuple/list with int
2018-11-17 09:29:05 +01:00
82861e80bc
more python3 related changes
2018-11-17 08:46:58 +01:00
558745b548
explicitly require python3
...
on older systems, python3 tpyically exists but python2 is the defaul
2018-11-17 08:12:12 +01:00
50f880afd1
more scripts working with python3
2018-11-16 19:32:17 +01:00
4ffb4a4321
fixed several typos
2018-11-16 19:28:24 +01:00
9922f5f646
adjusted to python3
...
translate is more complicated now:
https://stackoverflow.com/questions/41708770
2018-11-16 12:23:45 +01:00
26811b74d6
known to work with python3
2018-11-16 09:18:29 +01:00
a3647cc587
more files with confirmed python3 compatibility
2018-11-16 09:03:12 +01:00
f47891e292
booleans not allowed as indeces any more
2018-11-16 09:03:12 +01:00
e9e3fef8d4
more python3 compatible scripts
2018-11-15 16:40:54 +01:00
fe2c7efa27
seem to work
2018-11-15 13:56:48 +01:00
8f80152a03
use floor division of integers
...
1/2 = 0.5 in python3 (would be 0 in python2)
2018-11-15 12:28:36 +01:00
efd29e62f7
verbose should be optional
...
- causes problems on many systems (screwed up output)
- does not work with python 3 since threading class has changed
2018-11-15 12:16:55 +01:00
0cbcb028aa
fixed problem with "ValueError: Mixing iteration and read methods would lose data" for string-containing tables
2018-10-21 15:39:30 -04:00
7480d1a842
fixes for Python3
2018-10-19 07:35:59 +02:00
a00d15b889
geom files are not labeled
2018-09-29 11:18:35 +02:00
8616a92309
unused module
2018-07-20 03:50:07 +02:00
24d1528e04
on the way to full python 3 compatibility
2018-07-20 03:31:46 +02:00
2632be2a76
polishing
2018-07-20 03:09:53 +02:00
784ae28dbb
now working with python 3
2018-07-20 00:39:50 +02:00
1f637a0c49
python3 compatible map requires conversion to list
2018-07-19 18:01:38 +02:00
0438b7113a
using util function where possible, ensuring python3 compatibility
2018-07-19 16:38:25 +02:00
f928bd5e5b
more python 3 compatibility
2018-07-19 16:26:30 +02:00
35e470ff4d
needed for python3
2018-07-19 16:19:05 +02:00
9821654aae
iteritems does not exist in python3 anymore
...
items also works for python2 (might be slower though)
2018-07-19 16:16:10 +02:00
d138993c1d
using util functionality to be compatible with python3
2018-07-19 16:12:36 +02:00
aadcd61824
polishing
2018-06-18 00:05:55 +02:00
1b12457fe6
vicinityOffset to specific triggering IDs instead of just any other ID
2018-03-30 11:48:02 -04:00
0570a49ed5
fixed broken logic of restoring and preventing immutable microstructures
2018-03-27 16:53:49 -04:00
2c3eae6bf0
fixed tests and bug for very small unit cube fractions when grid is also small
2018-03-07 18:59:27 -05:00
32c34457c2
direct selection of valid seed coordinates within subfraction of unit cube instead of check and repeat
2018-03-07 17:45:22 -05:00
1bbaa7cefe
reverted last commit, scipy.linalg is different from numpy.linalg
2018-02-26 23:50:44 +01:00
6046a7ae3d
there is no scipy.linalg (at least on my system)
...
numpy.linalg is automatically imported together with numpy
2018-02-26 20:22:57 +01:00
b078234644
added scipy and scipy.linalg as known modules for calculations
2018-02-25 14:19:22 -05:00
f5177b6d2d
[skip ci] added option for non-periodic geometries
2018-02-20 10:20:35 -05:00
2254746177
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development
2018-02-12 11:23:05 +01:00
9249e7db2b
Merge branch 'development' into HMS
2018-02-07 11:44:17 +01:00
ba3a4e1254
indicating vectors with 1_, ..., n_ is standard now, "euler" also (more or less)
2018-02-05 17:34:08 +01:00
e304ce35da
forgot to rename function call to read "coordGridAndSize"
2018-01-30 12:58:43 -05:00
355d576b4d
shortened code with utility function coordGridAndSize
2018-01-30 09:20:47 -05:00
710970d728
updated option --label for addCurl/Div/Grad
2018-01-29 21:27:05 -05:00
1d71a52133
further simplifcation of scripts
2018-01-29 15:10:41 -05:00
b45b43c5ac
bug fix in addCurl, simplified scripts
2018-01-29 14:12:19 -05:00
622d038932
einsum now compatible with numpy 1.14
2018-01-29 09:18:05 -05:00
30272fc355
generalized addCurl with --data instead of --tensor and --vector
2018-01-28 18:25:50 -05:00
8fb127f31c
better description of activity
2018-01-28 18:08:02 -05:00
761670f218
generalized addGradient with --data instead of --scalar and --vector
2018-01-28 18:02:35 -05:00
532d669d33
switched to more robust line based output
2018-01-27 17:45:53 -05:00
ceb0ff09e6
Subdivide vertex data with geometry when converting Marc input to VTK
2018-01-15 17:20:24 -05:00
a03bb1ec3e
Add MSC.Marc to VTK conversion support
...
marc_to_vtk.py takes Marc input file, subdivides it and creates a
vtkUnstructuredGrid .vtu file with the resulting geometry. Currently
supports hexahedron elements.
vtk_addGridData.py adds nodal/cell data to some VTK grid. It is
essentially vtk_addRectilinearGridData with support for unstructured
grid (.vtu) format, which is marc_to_vtk.py's output.
2017-12-11 12:32:38 -05:00
c33655b479
fixed pyflakes issues
2017-11-28 11:14:22 -05:00
0c8c4b54aa
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development
2017-11-28 11:12:05 -05:00
3b96fac8bd
added script to calculate numerical derivative of ASCIItable data
2017-11-28 10:59:53 -05:00
4dfb52c792
unfinished HDF5 should not be part of the next release
2017-11-21 10:23:50 +01:00
b4f4527ad1
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development
2017-11-05 08:31:59 +01:00
2b69cb8ea9
removed unnecessary liens
2017-10-24 13:23:44 +02:00
d77789b89f
minor change
2017-10-24 12:01:10 +02:00
d599aec37f
Merge branch 'development' into HMS
2017-10-24 11:24:54 +02:00
82758bd90f
added yield criterion of facet potential
2017-10-24 11:15:34 +02:00
eddc2a6acf
numpy actually not needed
2017-10-20 10:17:08 +02:00
0c24f113c1
split overlong line
2017-10-20 10:14:15 +02:00
26b8788c06
script to colocate 2D ang files into one §D file and optionally creat geometry and Paraview files
2017-10-20 09:36:57 +02:00
eda8c24b7d
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development
2017-10-07 17:24:59 +02:00
14c1291046
added "--quiet" option to suppress online messaging
2017-10-03 14:03:50 -04:00
f46d721750
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development
2017-09-03 17:42:02 -07:00
64259d9239
bug fixed in whitelist sorting, more robust against numpy parsing errors
2017-08-28 19:38:14 -04:00
5b8bc65d37
exchanged string 'n/a' for 'nan' to allow smooth parsing as float value
2017-08-28 19:32:59 -04:00
9e5896a6c5
large speedup (10x) for unconditional filtering by using read/writeArray
2017-08-23 20:54:02 -04:00
fc4fb43d48
aborting when NO data columns found
2017-08-23 17:53:30 -04:00
ff072ae3c4
fixed bug (lost orgin info)
2017-08-23 15:14:22 -04:00
e82df723d1
added Rodrigues vector as possible input format
2017-08-23 14:10:56 -04:00
b3ac200c17
report linking column in screen output
2017-08-23 14:10:22 -04:00
9b6e092b5c
changed location where script appends itself to info trail
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used to be sometimes at top, sometimes at bottom; now always after predecessor and above standard geom header
2017-08-23 14:09:33 -04:00
f825e91bf1
script to straighten numbering in geom
2017-08-23 14:08:11 -04:00
12fed7a38f
added option to use seed coordinates that are not normalized to a unit cube
2017-08-16 16:24:45 -04:00
255a465e8b
sharpened error detection and reporting
2017-08-16 15:18:29 -04:00
e18c2fd74c
slight layout tweak
2017-08-16 12:52:46 -04:00
91c70fc823
sharpened error detection and reporting
2017-08-16 12:51:32 -04:00
a2947789b5
clarified help and reporting
2017-08-15 16:12:06 -04:00
4eff7cfdd8
fixed wrong name for "pos" options destination
2017-08-15 16:11:21 -04:00
95c0179945
labeling vectors and values independenty in addSpectralDecomposition
2017-08-13 02:14:34 +02:00
e6cc948ddf
added vector-valued conditions and cleaned obsolete code
2017-08-11 15:19:47 -04:00
b7d4b3d190
simplified internal handling of conditions and added vector capability to it
2017-08-11 11:56:27 -04:00
3860eecb7c
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development
2017-08-10 11:09:37 -04:00
9bbc0d4803
implemented fast yield surface fitting with yield stop criteria
2017-08-08 17:29:14 +02:00
36c370e668
implemented fast yield surface fitting with yield stop criteria
2017-08-08 17:25:38 +02:00
1a423617c2
combined assignement of curvature exponent to deal with negative dimensions
2017-08-03 12:12:47 -04:00
84a3885af8
negated option from "voxelspace" to "realspace".
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introduced logarithmic sense of curvature exponents, additional polishing
2017-08-03 12:08:51 -04:00
cb62066667
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development
2017-07-31 23:00:24 +02:00
68493a00f5
fixed PEP line continuation warning
2017-07-31 10:04:04 -04:00
c8222d6f82
Merge remote-tracking branch 'origin/development' into development
2017-07-31 09:51:10 -04:00
837b14592a
addLinked can now link between vector-valued columns
2017-07-31 09:34:30 -04:00
269eacb11d
added flag for skipping right-handedness check of eigenvector basis
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separate names for min,mid,max eigvals and vecs
2017-07-28 13:44:17 -04:00
6547ab8c69
not needed, ASCII table ensures shape (Npoints,Nvalues)
2017-07-05 04:43:20 +02:00
f085f61c4d
testing hook that checks for executable bit
2017-06-02 09:25:58 +02:00
6599f7299d
correct description
2017-06-01 10:00:29 +02:00
e5af0630fe
gaussian filter (wrapper no ndimage)
2017-05-29 10:33:05 +02:00
691f338f5d
executable bit got lost
2017-05-19 09:33:58 +02:00
ed85ce5bdb
changed argument handling in line with other scripts
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now also works with stdin/out
2017-04-28 12:36:10 +02:00
d35df1df49
Operate on MFD file to apply servo links, not client-server communication
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Speed up by many orders of magnitude... 64 x 64 x 64 mesh less than a minute! Thanks Brendan!
2017-04-26 17:32:01 -04:00
c34716a0da
modern form of croaking, added '*draw_automatic' as final output
2017-04-14 15:07:43 -04:00
d1c2e2114d
switch auto drawing back on at end of pipeline
2017-04-13 19:00:19 -04:00
95a982e002
default type for muliple arguments (not extend) is tuple, not list
2017-04-13 12:54:26 +02:00
88809863ba
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development
2017-03-20 15:14:15 -04:00
66b4e24ab7
solver.Marc.version has no argument anymore
2017-03-20 15:13:54 -04:00
0d648b8de0
Change script to use resolution-independent coords
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- Use the --voxelspace flag to get the old behavior
2017-03-07 20:37:30 -05:00
de57d9514e
removed code doubling and unused variables
2017-03-05 17:50:17 +01:00
f010aa97d9
Fix non-cube geometry structure, reduce memory
2017-02-24 22:30:04 -05:00
e5e6bed5de
Improve performance and generalize primitive shape
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- Behavior is mostly unchanged, but the primitive may be shifted by a voxel when compared to the previous version, which had rounding issues near the edge of the primitive.
- exponent flag specifies the exponents that satisfy the equation x^e1 + y^e2 + z^e3 < 1. (1,1,1) gives an octahedron, (2,2,2) a sphere, and large values (1e10, 1e10, 1e10) gives a hexahedral box for any reasonable resolution. Mixing the two can produce a cylinder, (1e10, 2, 2) gives one with rotational symmetry about the x-axis.
2017-02-24 00:42:28 -05:00
a9d72c54b6
was not python3 conforming
2017-02-04 01:07:24 +01:00
746cb9c306
nicer code layout
2017-01-19 15:10:38 +01:00
c80b02dd72
avoid reporting "none" as STDIN filename
2017-01-19 15:10:17 +01:00
49eb7aa1be
fixed nasty ABS that caused wrong packing for 1,2,1,1,1,... and the like
2016-12-25 12:39:49 -05:00
3628deb30e
changed option name from "no-config" to more common "without-config"
2016-12-23 17:46:16 -05:00
d67be0e3f3
reduced memory footprint (substantially) by switching to 32bit precision
2016-12-08 23:36:19 -05:00
c8f321356d
prefill immutable indices with closest mutable one
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Retain only orginially immutable locations, not those where immutability bled into.
Changed threshold for change from 0.5 to 0.95 of max diffusedEnergy.
2016-12-08 09:47:20 -05:00
9bb4f89e78
removed leftover debug output
2016-12-06 21:36:45 -05:00
a2db7e9ba1
added option to suppress writing of material.config part in header
2016-12-06 21:36:25 -05:00
cb95f3b244
fixed systematic drift of grain structure along -[1,1,1]
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correction of periodic Gauss kernel extension, inclusion of ndimage.gaussian_filter alternative (same runtime as FFT), proper output handling of grids <3D
2016-11-30 09:39:13 -05:00
40de6910b8
added --float option to translate real-valued grid data
2016-11-29 23:59:42 -05:00
814b05e2f6
renamed to hopefully clearer express functionality
2016-11-29 16:30:24 -05:00
0f04ddd88e
polishing of whitespace, usage help, etc.
2016-11-29 14:44:34 -05:00
43c1880195
fixed periodic averaging to work with multi-dimensional data
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option --periodic now takes list of labels that undergo periodoc domain averaging, i.e. incompatible to former API!
2016-11-29 14:44:06 -05:00
231f05e142
corrected bug that added index column values as first output
2016-11-29 11:16:50 -05:00
c9ec2e0f46
New table mapping based on shared column values
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renamed old addMapped to addRowMapped to better reflect true functionality.
2016-11-29 09:33:35 -05:00
873c52cceb
using 3 way merge to have syntax as similar as possible
2016-11-07 19:51:12 +01:00
6d91ce866e
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development
2016-11-07 09:10:39 +01:00
551b4369a1
improved readability
2016-11-07 09:06:35 +01:00
8179a703fb
now more flexible, works for synthetic data and user selected data
2016-11-06 23:07:12 +01:00
d35c9dd431
using Einstein sum to replace 'for loop'
2016-11-04 18:50:39 +01:00
a04968d43f
Merge branch 'development' into negativeRange
2016-11-01 17:20:56 +01:00
9e76b51014
fixing global variables handling (need to be defined before being used)
2016-10-31 22:53:14 +01:00
8593fb3ed7
unifying scripts
2016-10-31 22:11:16 +01:00
4acfc73fa1
Merge branch 'Python3' into development
2016-10-31 11:28:40 -04:00
94fcc9ad24
fixed language and syntax
2016-10-31 10:40:58 -04:00
8eb93a3274
python scripts now pack "a a-1 a-2 ... a-n" to "a to a-n"
2016-10-29 10:49:40 +02:00
aa3dc56949
fixed handling of last line (bug fix for second but last commit)
2016-10-29 10:30:42 +02:00
7e6e2e1c84
not using reserverd keyword "type"
2016-10-29 10:28:34 +02:00
1a56ad7a72
no logic change yet
2016-10-29 10:21:00 +02:00
6d9d25ea43
python 3 compatible and modernized
2016-10-28 15:40:17 +02:00
e43e37aae1
new style option setting
2016-10-27 23:06:17 +02:00
99dc75c2fd
proper capitalization
2016-10-25 21:53:32 +02:00
a62ab3b5d4
fixes (mainly tuple arguments for functions and lambda functions)
2016-10-25 21:52:51 +02:00
8a94f55a2e
python 3 compatibility
2016-10-25 06:44:12 +02:00
a84e7310f5
fixed prospector hints
2016-10-24 20:30:51 +02:00
96349ebf53
add log to each dataset
2016-10-17 18:24:47 -04:00
703ae3c6d6
add script for adding von Mises equivalent to HDF5 file
2016-10-17 17:29:44 -04:00
4d849219f7
will come back for this later
2016-10-17 16:59:42 -04:00
8e7f0c255b
fix some syntax error
2016-10-17 16:58:04 -04:00
74b29881f3
strain tensor calculation script for HDF5
2016-10-17 16:24:11 -04:00
1a2194f042
remove useless functions
2016-10-17 16:23:21 -04:00
fb1e4f0c39
add IPF color tuple for HDF5 file
2016-10-17 12:24:29 -04:00
b04c5801a5
syntax polish
2016-10-14 14:38:09 -04:00
0a35761636
delete unused module
2016-10-14 14:33:22 -04:00
dfb49c3138
as script for calc Cauchy stress in HDF5
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no safe net in the script, following 'let-it-fail' design
2016-10-14 14:32:20 -04:00
fd4b495de2
adding interface for addCalc with HDF5
2016-10-14 14:30:46 -04:00
05a3b569fc
adding parallel version of addCalc for H5 table
2016-10-14 12:26:46 -04:00
33de9cf2b9
script for adding data from HDF5 to vtk file
2016-10-14 12:06:59 -04:00
1f01dce862
use 4 space indentation
2016-10-14 12:06:09 -04:00
2f2490e784
remove unused import
2016-10-14 10:48:08 -04:00
e5e2eef375
add script generate vtr file from HDF5
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following "let-it-fail" design
2016-10-14 10:45:42 -04:00
353b5b6994
avoid doctring as argument
2016-10-14 10:42:03 -04:00
9ac3f564c8
syntax fix
2016-10-13 13:45:25 -04:00
8cdc7c0b10
add xdmf wrapper generator for HDF5
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Not recommended for large dataset due to potential memory leak currently plaguing Xdmf ilbrary.
2016-10-13 13:41:04 -04:00
ec59dfeec0
do not reshape data
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since xdmf is not stable right now, there is no need to reshape the data to tie it to the mesh. comment them out for future reference
2016-10-13 13:22:37 -04:00
ace06fd0e1
skip dulplicated columns in ascii table
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also add a todo list at the top
2016-10-13 11:33:38 -04:00
c311ac47ca
force using rectangular mesh
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Paraview cannot handle large number of polyvertices using xdmf, forcing a meshed structure to by pass the problem.
2016-10-12 20:20:15 -04:00
ffcfe67c73
remove debug output, fix name handling error
2016-10-10 09:46:11 -04:00
7278605004
fix naming error
2016-10-09 19:13:44 -04:00
6450cb3003
fix syntax error
2016-10-09 19:12:45 -04:00
6eb111dc7c
add script convert ASCII table to HDF5
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using H5Table
2016-10-09 19:01:38 -04:00
4e8bd83d4b
syntax error fix
2016-10-07 15:32:10 -04:00
5951b45259
only grain file type 1 seems to make sense (type 2 has average values).
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For type one, data is fixed i.e. flexible labels are not useful
2016-10-06 15:22:05 +02:00
de88bebe99
handling defaults correctly for extend option
2016-10-06 12:14:07 +02:00
f78f89fb12
periodic microstructure needs to be updated per iteration (N).
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now calling script twice gives the same result as one call with N=2.
results for N=1 are not affected
2016-10-05 15:24:37 +02:00
3abf0bc2d3
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into miscImprovements
2016-09-27 06:22:52 +02:00
0ffd74d536
correct flag "data" for updated vtk_addRectilinearGridData
2016-09-26 16:32:39 -04:00
1d06e82700
grain circumference identification
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fixed right most path selection criteria for grain circumference
2016-09-26 16:30:50 -04:00
5345b42d71
improved robustness against faulty RCB data
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deals gracefully with duplicate segments, new option to export cleaned up RCB
2016-09-25 21:18:53 -04:00
fb23c49b41
should be executable
2016-09-24 15:58:13 +02:00
e20623845a
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into miscImprovements
2016-09-22 16:14:07 +02:00
0f09a66b62
pyflake was complaining
2016-09-22 15:36:28 +02:00
f8901220ab
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development
2016-09-22 15:34:28 +02:00
25103205a8
bug fix, adjust to options change of vtk_addXXXData
2016-09-21 22:01:16 +02:00
0f636bf6c3
not needed
2016-09-21 17:47:37 +02:00
4cd8fe7f36
indices should be integers (visible warning)
2016-09-21 17:45:23 +02:00
43457dcfc5
flexible selection of axes
2016-09-21 17:43:07 +02:00
4ccc0cf5a1
tool to mirror geometries (enforce periodicity on measured data)
2016-09-21 17:06:50 +02:00
1180c8bb88
Fix calculation of interfaceEnergy
2016-09-15 17:36:43 -04:00
f3308dbef6
replace scalar/vector option with data
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vtk does not care 1D data array length
2016-09-14 19:59:26 -04:00
38d1a2c254
Merged branch development into development
2016-09-14 19:50:18 -04:00
eb69d6f4f1
Merged branch development into development
2016-09-14 19:42:15 -04:00
59c1eee16b
added possibility to restrict seed coordinates to fraction of unit box
2016-09-14 19:42:05 -04:00
ae16ccae61
need to use deep copy when converting np array to vtk array
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for batch array conversion, it is necessary to use the deep copy to ensure numpy_support.numpy_to_vtk works as it should.
2016-09-14 15:06:00 -04:00
53d2df6058
vector support 1D vector with arbitrary lenght
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simple hack to bypass the size check for vectors since vtk does not care the vector size.
2016-09-14 12:37:07 -04:00
804931db9e
force type cast index to int for numpy array
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Force type casting indices into int array to avoid warning:
VisibleDeprecationWarning: using a non-integer number instead of an integer will result in an error in the future
For more info, see http://stackoverflow.com/questions/20084218/deprecation-warning-in-scikit-learn-svmlight-format-loader
2016-09-12 19:09:48 -04:00
77729f39e3
commenting last commit
2016-09-11 14:41:48 +02:00
06405bc251
fixed coordinate system convention to be right handed always instead of random left and right handed assignment
2016-09-10 16:39:25 -04:00
2daad7542e
added option for periodic averaging
2016-09-10 16:39:25 -04:00
ee322be870
use np.histogram2d, fixed list.append bug when using weight column
2016-09-09 16:17:00 -04:00
8c4767d58c
syntax fix
2016-09-09 07:28:54 -04:00
017c08a7bb
syntax fix
2016-09-09 07:28:31 -04:00
da538fbce9
speed up of VTK data transformation
2016-09-08 18:05:49 -04:00
c05307a273
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into miscImprovements
2016-09-03 14:35:53 +02:00
a2f3839ca8
add missing numpy import
2016-09-02 14:37:15 -04:00
d9077805e4
Forced symetric tensor when adding tensor to vtk
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VTK addTensor by default using the lower triangle to populate its tensor object. Enforcing the tensor to be symmetric to avoid necessary confusion when adding data (most stress/strain tensor should symmetric by default, so it should not affect the results)
2016-09-02 09:30:49 -04:00
20d1164e5d
add tensor support for vtk_addRectlinearGridData
2016-09-01 16:57:29 -04:00
6db0a42eae
addvtk data now support tensor type (9 components)
2016-09-01 12:47:26 -04:00
4b02a55f4d
explicit type casting from boolean to int
2016-08-30 16:08:47 -04:00
891ac4d585
fixed comma syntax error
2016-08-25 12:17:27 -04:00
55d6adf1b8
renamed to reflect more general nature of script
2016-08-25 12:15:41 -04:00
85abf84186
generalized to user-specified mapping function instead of hardwired avg
2016-08-25 12:15:03 -04:00
f984f1ebea
enable floating point data and corrected counting of microstructures
2016-08-24 16:05:50 -04:00
Philip Eisenlohr