Commit Graph

4467 Commits

Author SHA1 Message Date
Martin Diehl ea33b321aa correct calculation of shear
need to convert volume to shear (and back for output)
2022-01-27 08:08:42 +01:00
Martin Diehl 1e748dc54e commenting 2022-01-27 07:28:33 +01:00
Martin Diehl e7ed32ba4e not needed 2022-01-27 00:01:53 +01:00
Martin Diehl 3bb2ae45d3 bugfixes
- L_tw/tr are not in lengths of Burgers vectors anymore
- need to define characteristic shear for tr
2022-01-26 23:57:59 +01:00
Martin Diehl 7d0d13bfed following paper
eq (10), eq (14), eq (49), eq (50), and Fig. 1
2022-01-26 23:28:39 +01:00
Martin Diehl 9e17efd1f8 transformation is for fcc-> hcp 2022-01-26 23:13:56 +01:00
Martin Diehl 95fff5d6f7 limit to TWINNING to fcc 2022-01-26 23:01:47 +01:00
Martin Diehl 8ceab5326f more systematic handling of bcc/hcp case 2022-01-26 22:49:11 +01:00
Martin Diehl d9f96bc0ec following paper, eq. (36) and eq. (37) 2022-01-26 22:33:44 +01:00
Martin Diehl 60e6e90874 avoid global states 2022-01-26 22:21:34 +01:00
Martin Diehl 5267794ff2 second order expansion of temperature-dependent variables 2022-01-26 22:04:44 +01:00
Martin Diehl c5fd467b44 power to one not needed 2022-01-26 21:47:33 +01:00
Franz Roters e7a999ffb1 Merge branch '146_grid-indexing+allocation' into 'development'
avoid duplicated variables + name adjustments

See merge request damask/DAMASK!505
2022-01-26 14:52:43 +00:00
Martin Diehl 68ea33c591 start at 1 for the same loop pattern 2022-01-26 12:21:08 +01:00
Martin Diehl a86dc322fb consistently put the check on the next line 2022-01-26 12:18:26 +01:00
Martin Diehl f1051ec28f polishing 2022-01-21 23:34:42 +00:00
Martin Diehl 96fed368ad name adjustments 2022-01-21 14:51:46 +01:00
Martin Diehl bc1b391449 Merge remote-tracking branch 'origin/development' into 146_grid-indexing+allocation 2022-01-21 07:23:24 +01:00
Sharan Roongta c2a822d8fd keys() function for dictionary as in Python.
Does not work for gfortran which fails with an ICE.
2022-01-20 23:45:47 +00:00
Martin Diehl 292cbdee30 consistent name 2022-01-20 14:56:21 +01:00
Martin Diehl 7bd8452bf8 set return value 2022-01-20 07:56:45 +01:00
Martin Diehl 7b1080fdb7 better and consistent variable name 2022-01-20 07:42:16 +01:00
Martin Diehl 1f86111f57 call SNESSetDM after DMDASNESSetFunctionLocal
following example ex5f.F90, seems to resolve segmentation fault
2022-01-19 22:57:22 +01:00
Martin Diehl fe094939e6 better to understand 2022-01-19 19:43:54 +01:00
Martin Diehl 0f4f2b6717 use only grid, not (x/y/z) start and end 2022-01-19 19:38:07 +01:00
Martin Diehl 89cb018189 polishing 2022-01-19 18:58:46 +01:00
Martin Diehl 3d6dcad385 Merge remote-tracking branch 'origin/thermal-solver-improvements' into 146_grid-indexing+allocation 2022-01-19 18:50:55 +01:00
Martin Diehl 25ddec76e7 avoid (x/y/z)end and (x/y/z)start, same information is in grid 2022-01-19 17:41:16 +01:00
Martin Diehl 96ff3314a3 simplified 2022-01-19 17:10:47 +01:00
Martin Diehl 642df40634 one-based counting 2022-01-19 16:56:54 +01:00
Sharan Roongta 1ad537b60c better to use global grid dimensions
also checking early allocation of Temperature field
2022-01-19 16:54:10 +01:00
Martin Diehl b18483cc6e simplify MPI debugging
needs manual modification in the source code
2022-01-19 16:45:14 +01:00
Martin Diehl 869fdc847a Merge branch 'development' into misc-improvements 2022-01-18 11:02:18 +01:00
Martin Diehl c5fd6a3677 random seed should contain some entropy
setting all elements to the same value does not make sense. Moreover,
negative values are allowed
2022-01-18 10:47:26 +01:00
Philip Eisenlohr 8b5122f52a Merge branch 'physics-based-hex-interactions' into 'development'
Physics based hex interactions

See merge request damask/DAMASK!495
2022-01-17 15:24:05 +00:00
Sharan Roongta 40ee4d3dd1 Merge branch 'petsc-64bit-integer' into 'development'
support for PETSc with 64bit integers

See merge request damask/DAMASK!496
2022-01-17 09:16:39 +00:00
Franz Roters 1d2bbc8cd9 Merge branch 'dislotwin-fix-tangent' into 'development'
corrected tangent calculation for twinning and transformation

See merge request damask/DAMASK!492
2022-01-17 07:57:51 +00:00
Martin Diehl a37178ddee handle case of -0.0
-0.0 < 0.0 ! false
so need sign to change direction for also for the corner case of -0.0
2022-01-15 12:28:39 +01:00
Martin Diehl d1cd125a5b direct array reversal, don't duplicate FFTW manual 2022-01-15 12:27:07 +01:00
Philip Eisenlohr 2c054f2b38 use same hex-hex interaction documentation as webpage 2022-01-13 11:23:09 -05:00
Philip Eisenlohr 45e33782e4 documentating more hex interactions 2022-01-13 10:42:05 -05:00
Martin Diehl 82dabe29c1 mesh: separate kind for DAMASK and PETSc integers 2022-01-13 16:30:42 +01:00
Philip Eisenlohr 4562f4262c add documentation to source code 2022-01-13 10:14:36 -05:00
Martin Diehl 29530da579 use correct kind of constants for calls to MPI/PETSc 2022-01-13 13:50:30 +01:00
Martin Diehl 91a3ea96ec final MPI-DAMASK integer kind decoupling
bugfix: set error for openMP-calucations
2022-01-13 13:21:44 +01:00
Martin Diehl d7dbb6ffc2 needs to be public for Marc 2022-01-13 12:03:22 +01:00
Martin Diehl a7417a7ad7 default integer, PETSc integer, and MPI integer might be different 2022-01-13 12:02:33 +01:00
Martin Diehl a3a3388855 decouple DAMASK default integer from MPI default integer 2022-01-13 10:25:45 +01:00
Martin Diehl 1c46e7ea1a not needed 2022-01-13 08:30:46 +01:00
Martin Diehl 8223dc7fa7 polishing
MPI, HDF5, PETSc, and DAMASK might have different integer kinds ..
2022-01-13 08:17:31 +01:00
Martin Diehl 3fb5bd459c pInt leftovers 2022-01-13 07:44:15 +01:00
Martin Diehl 4727652856 default integer is set via a compiler flag 2022-01-13 07:37:38 +01:00
Sharan Roongta 236f0297ac test added 2022-01-12 20:42:37 +01:00
Martin Diehl fd3c18ea4d calculate global entry in 64 bit 2022-01-12 17:58:44 +01:00
Martin Diehl ae0eead748 write out mapping as 64 bit integer 2022-01-12 17:44:07 +01:00
Martin Diehl 18913bb94e autodetect datatype 2022-01-12 17:33:14 +01:00
Martin Diehl a87db2ba0b test for long long integer 2022-01-12 16:56:24 +01:00
Martin Diehl 4bfc814a53 Merge remote-tracking branch 'origin/development' into petsc-64bit-integer 2022-01-12 16:37:22 +01:00
Franz Roters 76fe2d2b36 Merge branch 'misc-improvements' into 'development'
polishing

See merge request damask/DAMASK!497
2022-01-11 15:45:09 +00:00
Sharan Roongta e80d91e30a thermal restart (WIP) 2022-01-11 16:11:18 +01:00
Martin Diehl 16fbd1757c integer exponents are potentially faster 2022-01-10 20:50:46 +01:00
Martin Diehl eea8aa94af not used 2022-01-10 18:50:28 +01:00
Martin Diehl 1026d56842 credit where credit is due
referencing DOI gives faster access to actual data
2022-01-09 08:05:42 +01:00
Martin Diehl a884b99aa9 Merge remote-tracking branch 'origin/development' into physics-based-hex-interactions 2022-01-08 20:45:46 +01:00
Martin Diehl dd6e9a016e just off by 46 orders of magnitude ;) 2022-01-08 12:07:29 +00:00
Philip Eisenlohr b12a180974 added literature reference for constitutive law 2022-01-06 09:54:33 -05:00
Martin Diehl 1140625b12 copy and paste error 2022-01-04 17:29:45 +01:00
Martin Diehl 03e3fbd98f compute only when needed 2022-01-04 07:44:14 +01:00
Martin Diehl 4a7f23069c avoid misleading variable name 2022-01-04 07:32:56 +01:00
Martin Diehl 79fa888c99 Merge remote-tracking branch 'origin/development' into dislotwin-fix-tangent 2022-01-04 07:05:40 +01:00
Sharan Roongta b8203e94d8 Merge branch 'pure-LAPACK' into 'development'
improved function attributes

See merge request damask/DAMASK!491
2022-01-03 14:07:54 +00:00
Martin Diehl 510a26ded9 is used in dislotwin according to original paper 2022-01-03 10:36:23 +01:00
Martin Diehl 03c6708629 polishing 2022-01-01 19:52:32 +01:00
Martin Diehl d181b988c1 using vector access 2022-01-01 19:52:20 +01:00
Martin Diehl 770cf33667 correct calculation of tangent.
thanks to Seyedamirhossein Motaman (RWTH Aachen) for reporting
2022-01-01 19:51:31 +01:00
Martin Diehl b34655b7fc functions without side-effects are 'pure'
basically all 'getter' functions should be pure
2022-01-01 11:39:14 +01:00
Martin Diehl 2f74e0d070 avoid failing self test
increase number of samples to have less corner cases.
Needs to be allocatable to avoid stack/heap issue on ifort
2022-01-01 11:39:02 +01:00
Martin Diehl e678b231d9 following naming convention 2021-12-31 13:32:18 +01:00
Martin Diehl 017c182640 branch only once 2021-12-31 13:30:53 +01:00
Martin Diehl 0116e2dae6 bugfix: write only to active twin/trans system 2021-12-31 10:44:12 +01:00
Martin Diehl f2b6ddece1 reduce memory footprint 2021-12-31 08:12:30 +01:00
Martin Diehl d130225c9f polishing 2021-12-31 08:12:17 +01:00
Martin Diehl da00f33487 transformation is only for fcc 2021-12-31 08:11:12 +01:00
Martin Diehl 1661b815b2 correct calculation of temperature dependent stacking fault energy 2021-12-31 08:11:01 +01:00
Martin Diehl de9183af4e functions without side-effects are 'pure'
basically all 'getter' functions should be pure
2021-12-31 08:10:49 +01:00
Martin Diehl 95c64f7a0a avoid failing self test
increase number of samples to have less corner cases.
Needs to be allocatable to avoid stack/heap issue on ifort
2021-12-31 08:10:09 +01:00
Martin Diehl fb51e3c4cd functions have no side-effects, hence 'pure' 2021-12-29 07:19:26 +01:00
Martin Diehl 59bb264b5f LAPACK routines can be considered pure
all arguments have 'intent' specification and don't access any global
variables.
output to screen only occurs in the case that someting goes wrong
2021-12-29 07:09:52 +01:00
Martin Diehl 4583c17080 corrent 'intent' specification
- http://www.netlib.org/lapack/explore-html/d7/d3b/group__double_g_esolve_ga5ee879032a8365897c3ba91e3dc8d512.html
- http://www.netlib.org/lapack/explore-html/dd/d9a/group__double_g_ecomputational_ga56d9c860ce4ce42ded7f914fdb0683ff.html
2021-12-29 07:00:28 +01:00
Martin Diehl 1e965c42b7 don't rely on ML
avoid dependencies to external packages as much as possible
2021-12-27 17:44:22 +01:00
Martin Diehl 1ddf1e5694 support for PETSc with 64bit integers
compiles, but untested
2021-12-21 23:53:46 +01:00
Martin Diehl e10dea5b6c easier to understand 2021-12-19 22:53:48 +01:00
Martin Diehl 00230d482f use data from other physics directly
more clear code, simplified interfaces
2021-12-19 22:07:23 +01:00
Martin Diehl 5af6cc288b whitespace adjustments 2021-12-19 21:46:10 +01:00
Martin Diehl f833d348e0 testing random sampling 2021-12-17 08:01:15 +01:00
Martin Diehl f40d731fe1 use the Box-Muller transform instead of random sampling
still needs testing.
2021-12-16 21:22:44 +01:00
Martin Diehl 6ba2a08e5a easier to read 2021-12-11 11:50:40 +01:00
Martin Diehl d6ba73d9e2 consistent names 2021-12-11 09:54:46 +01:00
Martin Diehl f51633d43a forall is deprecated
do concurrent is the successor but ifort had problems and generated
faulty code
2021-12-11 09:01:42 +01:00
Martin Diehl 7d7d0c2659 only local variable are good variables 2021-12-11 08:49:30 +01:00
Martin Diehl a23a714bd0 polishing 2021-12-07 19:10:24 +01:00
Sheng Zhang d66b9e1896 subdivision of interaction matrix for hcp 2021-12-06 16:51:18 +01:00
Sheng Zhang a4cd663fc0 Merge branch 'no-2prism-hex' into development 2021-12-06 16:45:01 +01:00
Martin Diehl fe2123bae4 2. order prismatic systems are not needed
not clear for which material they have been introduced, according to
T.R. Bieler and P. Eisenlohr they are typicall not active in any
material of interest
2021-12-06 12:23:24 +01:00
Martin Diehl 8ade749f05 avoid conversions 2021-12-06 08:55:00 +01:00
Martin Diehl 2fb368cf8c consistent space (as in 'end module' etc) 2021-12-06 07:59:40 +01:00
Martin Diehl 08a709c6d9 capitalize HDF5 prefix 2021-12-06 07:55:22 +01:00
Martin Diehl 2f067b544e use variables, not descriptors 2021-12-06 07:55:13 +01:00
Martin Diehl c818756f68 wrong check
iand is used for checking, see https://support.hdfgroup.org/HDF5/doc/RM/H5Z/H5Zget_filter_info.htm
2021-12-02 20:51:33 +01:00
Martin Diehl 731e20261c bugfix for HDF5 without deflate filter
before inquiring whether a filter supports compression/decompression, we
first need to check whether it is available at all to avoid raising an
error.
Extended the check to the shuffle filter
2021-12-02 13:00:59 +01:00
Martin Diehl 5abfe3c214 Merge remote-tracking branch 'origin/development' into MSC-Version 2021-12-01 15:35:49 +01:00
Sharan Roongta 7e7098baf7 Merge branch 'rotate-Voigt' into 'development'
Rotate voigt

See merge request damask/DAMASK!463
2021-11-29 16:47:39 +00:00
Nikhil Prabhu 96e4cb591c Merge branch 'integer-exponents' into 'development'
Using integer exponent

See merge request damask/DAMASK!467
2021-11-29 07:32:04 +00:00
Philip Eisenlohr a531b7ccae transitioned remaining real exponents to int 2021-11-28 12:46:26 -05:00
Martin Diehl 81daebd0e6 Merge remote-tracking branch 'origin/development' into integer-exponents 2021-11-27 20:44:26 +01:00
Martin Diehl 1fbeabc949 Merge remote-tracking branch 'origin/development' into rotate-Voigt 2021-11-27 19:55:02 +01:00
Martin Diehl ccd6e44b6b Merge remote-tracking branch 'origin/development' into 134-output_none 2021-11-27 19:17:27 +01:00
Philip Eisenlohr 2fbe34497e integer exponents 2021-11-26 14:13:04 -05:00
Martin Diehl 825eb3824b polishing 2021-11-26 20:10:21 +01:00
Philip Eisenlohr 6cad6bc5cf clarify slip plane for (first) pyr<a> 2021-11-26 13:01:40 +01:00
Martin Diehl b88ab1af48 simplify search for interaction parameters 2021-11-26 13:01:40 +01:00
Martin Diehl bfc6b69ee2 integer exponents: faster and shorter 2021-11-25 20:52:22 +01:00
Franz Roters f435062a1d support for Marc2021.3.1 2021-11-25 17:30:22 +01:00
Martin Diehl 72c717d51d simplified/correct type 2021-11-25 15:37:13 +01:00
Sharan Roongta 271bb8df88 being consistent 2021-11-25 15:03:00 +01:00
Sharan Roongta 90f967cc86 Merge remote-tracking branch 'origin/T_ref300' into dynamic-C 2021-11-25 12:11:38 +01:00
Martin Diehl fb8c515a98 capitalize constants
not sure whether we should make exceptions for k_B and T_room
2021-11-25 11:52:52 +01:00
Sharan Roongta 8b06d97e84 Merge remote-tracking branch 'origin/T_ref300' into dynamic-C 2021-11-25 11:18:25 +01:00
Martin Diehl e941867290 single source of truth 2021-11-25 06:23:26 +01:00
Martin Diehl bc30248b95 0K is not a good reference 2021-11-25 06:12:55 +01:00
Sharan Roongta 35f20811cb thermal dependent C 2021-11-24 23:21:31 +01:00
Philip Eisenlohr da23c916ca polish 2021-11-21 15:49:04 -05:00
Martin Diehl 28ff027b38 exploit symmetry for stress calculation 2021-11-20 22:36:01 +01:00
Martin Diehl a857285e34 backward transformation for Voigt 2021-11-20 22:09:01 +01:00
Martin Diehl f6440f7f17 need to check 'any', adjusted tolerance 2021-11-20 15:18:48 +01:00
Martin Diehl 87100d1dce avoid conversion Voigt-6x6 to 3x3x3x3 2021-11-20 15:15:59 +01:00
Martin Diehl a6c311f410 commented 2021-11-20 12:16:32 +01:00
Martin Diehl 021d614daf using Voigt notation
This is a bugfix with a change of behavior
2021-11-19 20:44:30 +01:00
Martin Diehl ff9fa1d4f7 using Voigt notation instead of proprietary scaled 6x6 notation
Note: This results in a change of behavior for the transformation
systems of dislotwin. I assume that this fixes a bug, but still need to
confirm where the equations in lattice_C66_trans come from
2021-11-19 07:33:59 +01:00
Martin Diehl fa8218124a avoid conversions 2021-11-18 22:02:19 +01:00
Martin Diehl 038dd1fc40 correct names
whether C66 is homogenized or not is a decision of the caller
2021-11-18 21:31:08 +01:00
Martin Diehl dfe6d0a195 more support for Voigt notation 2021-11-18 21:06:38 +01:00
Martin Diehl 020ef64d7d explicit conversions 2021-11-18 19:37:48 +01:00
Martin Diehl 8a8fdfc93c use Voigt notation
there is no advantage of using the symmetrized conversions
2021-11-18 17:33:08 +01:00
Martin Diehl 4d29393ced simplified 2021-11-18 16:59:23 +01:00
Martin Diehl f7a42bdc1a avoid conversion to 3333 2021-11-18 16:56:36 +01:00
Martin Diehl 8d64a1c2f2 mark compressed notation 2021-11-18 16:37:34 +01:00
Martin Diehl 72c07cfc17 'present' propagates 2021-11-18 16:33:21 +01:00
Martin Diehl 29771feaae cleaning 2021-11-18 14:43:05 +01:00
Martin Diehl eee455c0d3 polishing 2021-11-18 13:12:14 +01:00
Sharan Roongta 0badba032b Merge remote-tracking branch 'origin/development' into dynamic-C 2021-11-18 10:29:33 +01:00
Sharan Roongta 55d6b1dd1a preparing for temperature dependent C by calling it dynamically 2021-11-17 21:35:39 +01:00
Franz Roters 262ff03b9f more consistent formatting of loops 2021-11-17 09:11:30 +01:00
Philip Eisenlohr 4ebf14317a Merge branch 'development' into pretty-print-init 2021-11-16 12:56:38 -05:00
Franz Roters 58410709b9 Merge branch '136-skip-plasticity-calculations-for-purely-elastic' into 'development'
reduce computation effort for plasticity==none

Closes #136

See merge request damask/DAMASK!452
2021-11-16 16:28:25 +00:00
Philip Eisenlohr 43ae4983ed fixed misaligned/too short "writing..." statements 2021-11-15 12:58:59 -05:00
Philip Eisenlohr 69843d0833 Merge branch 'development' into pretty-print-init 2021-11-15 12:39:14 -05:00
Philip Eisenlohr da9fdf53d2 consistent indentation and line-spacings in reporting 2021-11-15 12:35:44 -05:00
Nikhil Prabhu 64d70d9be3 user option to have no output
f_out = none
2021-11-15 14:39:29 +01:00
Martin Diehl f7dbda31e8 style adjustments
- two empty lines after variables
- enddo, endif should have space
2021-11-14 06:46:01 +01:00
Philip Eisenlohr 2408b74cac reduce computation effort for plasticity==none 2021-11-14 06:45:37 +01:00
Martin Diehl aa6efd21cd Merge remote-tracking branch 'origin/development' into initial-eigenstrain 2021-11-12 08:46:50 +01:00
Martin Diehl 8138d3a180 style adjustments 2021-11-11 23:59:48 +01:00
Martin Diehl ba31ff7263 do not rely on ML per default 2021-11-11 23:23:14 +01:00
Martin Diehl b7ad5b3167 'standard' style 2021-11-10 20:53:20 +01:00
Philip Eisenlohr 186b688b04 only look for opening part of <CellData> tag 2021-11-09 15:10:19 -05:00
Martin Diehl 0514ca7a56 Merge remote-tracking branch 'origin/development' into initial-eigenstrain 2021-11-08 18:49:41 +01:00
Martin Diehl a041551b9f Merge remote-tracking branch 'origin/development' into mesh-order 2021-11-03 07:57:59 +01:00
Martin Diehl f4f0163d5e Merge remote-tracking branch 'origin/development' into initial-eigenstrain 2021-11-02 13:22:47 +01:00
Martin Diehl e0b6a28b48 better matching name 2021-10-31 22:13:36 +01:00
Martin Diehl 737eff9179 bugfix: change of behavior
v_0 was erroneously introduced
use tau = (tau_pos+tau_neg)/2
2021-10-31 18:59:51 +01:00
Martin Diehl 6d117882c5 use precalculated value 2021-10-31 17:29:35 +01:00
Martin Diehl fbc4865c30 mathematically equivalent re-formulation
allows to disable contribution from grain size by setting it to a large
value
2021-10-31 15:42:18 +01:00
Martin Diehl f5fe0b9dca bugfix: change of behavior
negative values for the resolved stress do not make sense.
The paper does not take this into account (eq (14), Cereceda et. al
2016). According to my understanding, only the non-thermal contributions should be
substracted, so abs(tau_pos)/abs(tau_neg) would not be sufficient.
2021-10-31 09:53:58 +01:00
Martin Diehl e20b705f54 following dislotwin 2021-10-30 23:02:51 +02:00
Martin Diehl bff186051c simplified 2021-10-30 22:54:02 +02:00
Martin Diehl bb757cf82e style adjustments 2021-10-30 13:15:03 +02:00
Martin Diehl f0a33b452f unifying style 2021-10-28 07:05:14 +02:00
Martin Diehl b4ff89f304 improved test 2021-10-27 22:54:26 +02:00
Martin Diehl a00c6743c3 symbolic notation in numerics.yaml
- p_i: integration order
- p_s: shape function order

ensure working combination (p_s = p_i: full integration, p_s = p_i+1:
reduced integration)
2021-10-26 11:51:08 +02:00
Daniel Otto de Mentock fc42665838 Merge branch 'modern-complex-components' into 'development'
better readable

See merge request damask/DAMASK!444
2021-10-22 10:48:40 +00:00
Martin Diehl 256c48831e better readable 2021-10-19 23:08:21 +02:00
Martin Diehl 2e340d3489 forgotten rename 2021-10-15 22:19:58 +02:00
Martin Diehl 519bb857d7 save list of files used for compilation
helpful for debugging and creating automated documentation
2021-10-15 22:15:08 +02:00
Martin Diehl c628c028dc SYNTAXONLY for mesh, avoid code duplication 2021-10-15 22:14:37 +02:00
Martin Diehl dd7549a381 seems to work without further changes 2021-10-06 07:50:42 +02:00
Martin Diehl 29431eb8c5 same reporting as in python 2021-09-12 21:55:14 +02:00
Martin Diehl 949eea1624 bugfix: did not work with VTK 8 2021-09-01 11:07:39 +02:00
Martin Diehl 566e0445fc old url is not working anymore 2021-08-25 08:18:46 +02:00
Martin Diehl 129ff28692 Merge remote-tracking branch 'origin/master' into misc-improvements 2021-08-24 16:04:32 +02:00
Sharan Roongta 9061297e6e typo 2021-08-19 19:57:52 +02:00
Martin Diehl caf9a29b73 useful information, especially in logs from bug reports 2021-08-19 07:10:00 +02:00
Sharan Roongta 411f35272a offset should have been taken into account (like earlier)
new changes should not break old functionality
2021-08-19 06:10:44 +02:00
Martin Diehl 49ccbf3eb8 still not perfect:
https://stackoverflow.com/questions/32411963
2021-08-18 22:20:30 +02:00
Sharan Roongta 93d23fa6bb Merge remote-tracking branch 'origin/development' into YAML-bug-fix 2021-08-17 18:57:14 +02:00
Sharan Roongta a1fd45bded offset should have been taken into account (like earlier)
new changes should not break old functionality
2021-08-17 17:46:22 +02:00
Martin Diehl 4160c4fdb4 fix for parallel HDF5
if filters are applied, writing from one process does not work if the
file is opened for parallel write
2021-08-15 13:26:15 +02:00
Martin Diehl 497bf2c645 avoid errors for empty datasets
empty dataset cannot be chunked, but filters can only be applied to
chunked datasets
2021-08-14 20:44:59 +02:00
Martin Diehl 1963343cd8 avoid issues with empty files
optional files (numerics.yaml, debug.yaml) can be empty
2021-08-14 20:01:25 +02:00
Martin Diehl 30d9f57db0 also compress string datasets
results in different type (numpy string instead of numpy object), tests need to be adjusted
2021-08-14 16:28:51 +02:00
Martin Diehl 595cc4e59e always chunk data
for small datasets:
- only one chunk
- no compression
2021-08-14 15:48:07 +02:00
Martin Diehl 01d5458611 correct line continuation 2021-08-11 14:32:21 +02:00
Martin Diehl c2e86a2b2a lessons learned from compilation with Intel 2021.3 2021-08-10 23:47:13 +02:00
Vitesh Shah b29b0ecd71 Merge branch 'development' into report-systems 2021-08-10 09:16:13 +02:00
Philip Eisenlohr f75235f6a9 Merge branch 'more-flexible-L' into 'development'
more flexibility for the L in the load case

See merge request damask/DAMASK!420
2021-08-09 21:27:13 +00:00
Martin Diehl cf66b81e3a avoid code duplication 2021-08-07 22:02:44 +02:00
Martin Diehl 5b4b1c1933 enforce correct shape 2021-08-05 20:32:58 +02:00
Martin Diehl 00a053c4c8 Merge remote-tracking branch 'origin/development' into initial-eigenstrain 2021-08-05 16:25:27 +02:00
Sharan Roongta 2635bb012c Merge remote-tracking branch 'origin/development' into YAML-improvements 2021-08-05 14:49:33 +02:00
Martin Diehl 68eb930bf0 Merge remote-tracking branch 'origin/development' into report-systems 2021-08-03 21:57:50 +02:00
Vitesh 4a8c836117 Merge branch 'store-sim-setup' into 'development'
store information on slip and twin systems

See merge request damask/DAMASK!422
2021-08-03 13:16:59 +00:00
Sharan Roongta 100215edb6 Merge remote-tracking branch 'origin/development' into YAML-improvements 2021-08-02 16:57:07 +02:00
Sharan Roongta c5a80bc75d more readable 2021-08-02 16:50:21 +02:00
Martin Diehl e8312a49ed polishing 2021-08-02 10:38:59 +02:00
Martin Diehl 044a048944 taking care of corner cases (e.g. restart)
adjusting tests to take care of new 'setup' group
2021-08-01 22:46:11 +02:00
Martin Diehl e97757bd25 Merge remote-tracking branch 'origin/development' into report-systems 2021-07-30 15:49:42 +02:00
Sharan Roongta e89a03d456 Suggestion by @Franz 2021-07-28 18:04:52 +02:00
Sharan Roongta 578ee2b214 Merge remote-tracking branch 'origin/development' into YAML-improvements 2021-07-28 12:15:09 +02:00
Sharan Roongta 3d7f15c940 meaningful error message incase of mismatch in quotes 2021-07-28 12:14:00 +02:00
Martin Diehl 5d0c0f4283 outdated instructions 2021-07-27 16:44:52 +02:00
Martin Diehl af714cfd5b broken Intel compiler (do concurrent)
errors occur under unclear conditions, better avoid at the moment:

https://community.intel.com/t5/Intel-Fortran-Compiler/do-concurrent-broken-with-openmp/m-p/1301528#M156942
https://community.intel.com/t5/Intel-Fortran-Compiler/Bug-with-do-concurrent-and-openmp/m-p/1173473m
2021-07-27 16:44:13 +02:00
Martin Diehl 07fb7f8fdf save information on slip systems for reproducibility 2021-07-27 15:39:21 +02:00
Martin Diehl a6f7e4f1a6 play it safe 2021-07-27 10:18:55 +02:00
Martin Diehl 64d52dbbf4 store input deck, MSC.Marc now 100% reproducible 2021-07-27 09:46:51 +02:00
Martin Diehl 26ae352a4c make setup data easily accessible to the user 2021-07-27 09:38:47 +02:00
Martin Diehl b9d4eb23cc only rank 0 reads file for MPI 2021-07-27 08:54:17 +02:00
Martin Diehl 812b0f07f5 read file only once (per process) 2021-07-27 08:35:52 +02:00
Martin Diehl 367c088b16 sorting according to dependency (no Makefile) 2021-07-27 08:00:24 +02:00
Martin Diehl ddb0429a1d store load case (full reproducibility for grid solver) 2021-07-27 07:57:04 +02:00
Martin Diehl e01d271ee4 store geometry (for full reproducibility) 2021-07-27 07:43:35 +02:00
Martin Diehl 3b06498c2f make results self-contained for reproducibility
ToDo: same functionality for load and geom
2021-07-27 07:40:55 +02:00
Martin Diehl f20302e0ee early initialization of results
need to be done before config if config writes to it
2021-07-27 07:27:18 +02:00
Martin Diehl 820d590b6b write string to result
requires to open file without MPI support
2021-07-27 07:25:44 +02:00
Martin Diehl 58c1f5fdc1 write string, only from one MPI process
needed to store simulation setup. I don't see a situation where strings
are distributed over multiple processes
2021-07-27 07:23:02 +02:00
Martin Diehl a891fe4281 keep it simple 2021-07-26 22:59:53 +02:00
Martin Diehl 558a643120 microstructure is now dependentState 2021-07-26 22:56:40 +02:00
Martin Diehl b5dade2f70 Report slip system definition to result file 2021-07-26 22:49:19 +02:00
Martin Diehl 855186eb83 Merge remote-tracking branch 'origin/development' into report-systems 2021-07-26 20:29:23 +02:00
Martin Diehl c7ed0e7934 Merge remote-tracking branch 'origin/development' into do-concurrent 2021-07-26 20:20:52 +02:00
Franz Roters 012f09caa7 Merge branch 'plastic-name-behavior-fix' into 'development'
adjusted names and behavior of dislo(tungsten + twin) + kinehardening

See merge request damask/DAMASK!419
2021-07-26 14:51:20 +00:00
Sharan Roongta ac6d31b1f9 Merge branch 'polishing' into 'development'
Polishing

See merge request damask/DAMASK!418
2021-07-26 13:09:49 +00:00
Martin Diehl f1f658bbd2 Merge remote-tracking branch 'origin/development' into plastic-name-behavior-fix 2021-07-26 15:07:53 +02:00
Abisheik Panneerselvam 6a9c892d7b Merge branch 'write_ipdisplacements' into 'development'
Write ip displacements

See merge request damask/DAMASK!414
2021-07-26 09:01:04 +00:00
Martin Diehl e56f2e09a4 trivial and never used
even the more commoly used fucntions for 3x3 matrices are not all in use
2021-07-26 10:22:53 +02:00
Martin Diehl d19ab4c4f6 co concurrent possible here
note: do concurrent cannot be used for the double loops for 66 to 3333!
2021-07-25 14:37:50 +02:00
Martin Diehl 61a3b33e71 output info about used slip/twin systems 2021-07-25 14:11:07 +02:00
Martin Diehl 31a4000655 no need for arbitrary dimension
not sure if correct, not used at all (even identity4th for 3 dim is not
used, but now at least tested)
2021-07-25 13:32:11 +02:00
Martin Diehl 3bb5ae3d9e concurrent/parallel execution is possible here 2021-07-25 13:20:39 +02:00
Martin Diehl d2b5a4b339 pointer voodoo for ifort 2021-07-25 10:30:44 +02:00
Martin Diehl 18b3424975 handle twin and slip systems 2021-07-25 10:12:01 +02:00
Martin Diehl c388ab97c9 trying to make sense of HDF5 pointer magic 2021-07-25 09:43:52 +02:00
Martin Diehl d9ef1ef5e4 write variable length string (as other, best compatibility with h5py) 2021-07-25 09:36:56 +02:00
Martin Diehl 26e1e979f5 length is known 2021-07-24 23:08:05 +02:00
Martin Diehl 71e17ba917 WIP: report active slip systems to DADF5
needs further work, currently an array of fixed length strings is
written while all single strings are of variable length type
2021-07-24 22:51:57 +02:00
Martin Diehl a98ae267a0 option to initialize F_i
start simulation with eigenstrain. Works only for moderate
eigentstrains, reaching the plastic limit is most likely an issue.
2021-07-24 18:47:45 +02:00
Martin Diehl b3f5e12232 using burgers vector of tw/tr system seems to make more sense here
otherwise twinning will not work in many cases.
Matching number is only required for nucleation of tw/tr
2021-07-24 18:37:25 +02:00
Sharan Roongta ae49920256 support single and double quotes in key value pairs also
escape characters not supported in double quotes
2021-07-24 17:40:27 +02:00
Martin Diehl 59d09d708e string array support for attributes 2021-07-24 17:18:31 +02:00
Martin Diehl eef7b8f0a9 nothing to select anymore 2021-07-24 15:16:30 +02:00
Martin Diehl d87b10bfe7 symbolic names 2021-07-24 15:03:26 +02:00
Martin Diehl db07ee2113 supported by recent compilers 2021-07-24 14:35:17 +02:00
Martin Diehl f22f30e05d same functionality as for 1D 2021-07-24 14:27:00 +02:00
Martin Diehl d6ce721a25 need to check type of leaf
otherwise, using a [list] where a scalar is expected results in a crash,
not in a meaningful error message
2021-07-24 12:10:59 +02:00
Martin Diehl 931dc99557 not used
climb formulation was updated a while ago
2021-07-24 11:21:07 +02:00
Martin Diehl d4ffc778c2 easier to read
removed comment regarding use of dot_state in kinetics_t(w/r). Data stored
in dotState is not reliable, FPI integrator for writes to it and Runge-Kutta
calls the dot state function at different time steps
2021-07-24 07:11:31 +02:00
Martin Diehl 527fd306e2 change of behavior
- gamma (state) increases monotoneously
- region of spontaneous annihilation is ignored in dipole formation
2021-07-23 22:25:06 +02:00
Martin Diehl 2a78174547 standard names in source code 2021-07-23 22:17:00 +02:00
Martin Diehl c46813657f better to understand 2021-07-23 21:56:34 +02:00
Martin Diehl f96b0371ac proper output name/format 2021-07-23 21:48:40 +02:00
Martin Diehl 6936ecb091 sl is the subscript for slip 2021-07-23 21:36:26 +02:00
Sharan Roongta a5c4e7232c probably not needed
We remove blank spaces while converting to flow YAML.
2021-07-23 18:37:45 +02:00
Sharan Roongta c347688410 Merge remote-tracking branch 'origin/development' into YAML-improvements 2021-07-23 17:55:03 +02:00
Sharan Roongta ca8775e0d4 allow " " in YAML, follow yamllint. 2021-07-23 17:45:10 +02:00
Martin Diehl d216e77ca6 default values for p/q are dangerous 2021-07-23 09:07:39 +02:00
Martin Diehl 2cc8612572 consistent variable names 2021-07-23 07:16:08 +02:00
Martin Diehl f6378790f1 following python
we might want to rename the whole module from 'lattice' to 'crystal'
2021-07-23 06:46:17 +02:00
Martin Diehl f5af352644 whitespace adjustments 2021-07-23 00:09:51 +02:00
Martin Diehl d682b477dd following paper 2021-07-22 23:22:45 +02:00
Martin Diehl 85fd2e3fad not needed 2021-07-22 23:15:20 +02:00
Martin Diehl 3f7043de74 standard name 2021-07-22 23:15:20 +02:00
Martin Diehl 7e27baacfe missing conversion 2021-07-22 21:39:05 +02:00
Sharan Roongta bd9cae11a5 allow multi line scalar list items.
If a scalar list item has ',', the parser would consider it as a separator and not a part of the string
For the moment, this scalar item is enclosed with double quotes ""
In the next step, the flow parser should be able to use this quotes as an indicator for strings
2021-07-22 15:51:33 +02:00
Martin Diehl a03aa97970 default name 2021-07-22 15:41:09 +02:00
Martin Diehl 4fab078d18 multinomial tested+simplified 2021-07-22 15:31:30 +02:00
Martin Diehl d9aa638ad7 shorter 2021-07-22 15:11:38 +02:00
Martin Diehl 5ac592eb9e initialize L_(i/p), L_(i,p)0 2021-07-22 12:31:10 +02:00
Martin Diehl 69cc0b528b do calculation for initialization 2021-07-22 11:38:03 +02:00
Martin Diehl aa03e59306 same statement, different syntax but silences gfortran runtime warning
with automated LHS, compiling in DEBUG mode (tested for mesh solver)
gives:
home/m/DAMASK/src/phase_mechanical.f90:1010:43: runtime error: signed integer overflow:
-9223372036854775808 - 1 cannot be represented in type 'integer(kind=8)'
2021-07-22 11:24:10 +02:00
Martin Diehl 5b66db8a39 only mechanics at the moment
will be extended, but most likely differently
2021-07-22 10:12:43 +02:00
Martin Diehl eb834b635d unify notation with grid
consistent style: Symbols, not descriptions.
also removed untested/unused loginc functionality. Once load cases are
written in YAML, we can introduce the scaling as in DAMASK_grid
2021-07-22 08:48:44 +02:00
Martin Diehl 173a5f8e55 less public/unneeded variables 2021-07-22 07:48:01 +02:00
Martin Diehl 574cfd7034 Merge remote-tracking branch 'origin/development' into more-flexible-L 2021-07-22 00:20:33 +02:00
Martin Diehl de7ef43095 documenting/silencing gfortran 2021-07-21 23:49:24 +02:00
Martin Diehl aace5d25a8 initialization needed 2021-07-21 23:19:41 +02:00
Martin Diehl 58a7921966 no need for temp, pack instead of reshape for 1D array 2021-07-21 22:45:04 +02:00
Martin Diehl b817c620a3 let the computer count 2021-07-21 21:25:33 +02:00
Martin Diehl 23077fd58c testing coordinates
I don't understand why this pattern exists (with w(2) = 3, w(3) = 2),
but it exists
2021-07-21 19:42:53 +02:00
Martin Diehl 5a04a1d661 let the computer do the counting 2021-07-21 19:41:14 +02:00
Martin Diehl c56979e2ad single source of truth 2021-07-21 18:47:19 +02:00
Martin Diehl 000007ba59 better test automatically 2021-07-21 18:06:37 +02:00