string array support for attributes
This commit is contained in:
Martin Diehl
parent
eef7b8f0a9
commit
59d09d708e
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@ -71,6 +71,7 @@ module HDF5_utilities
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module procedure HDF5_addAttribute_str
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module procedure HDF5_addAttribute_int
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module procedure HDF5_addAttribute_real
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module procedure HDF5_addAttribute_str_array
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module procedure HDF5_addAttribute_int_array
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module procedure HDF5_addAttribute_real_array
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end interface HDF5_addAttribute
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@ -270,7 +271,7 @@ end subroutine HDF5_closeGroup
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!--------------------------------------------------------------------------------------------------
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!> @brief check whether a group or a dataset exists
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!> @brief Check whether a group or a dataset exists.
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!--------------------------------------------------------------------------------------------------
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logical function HDF5_objectExists(loc_id,path)
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@ -280,6 +281,7 @@ logical function HDF5_objectExists(loc_id,path)
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integer :: hdferr
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character(len=:), allocatable :: p
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if (present(path)) then
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p = trim(path)
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else
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@ -298,7 +300,7 @@ end function HDF5_objectExists
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!--------------------------------------------------------------------------------------------------
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!> @brief adds a string attribute to the path given relative to the location
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!> @brief Add a string attribute to the path given relative to the location.
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!--------------------------------------------------------------------------------------------------
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subroutine HDF5_addAttribute_str(loc_id,attrLabel,attrValue,path)
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@ -313,6 +315,7 @@ subroutine HDF5_addAttribute_str(loc_id,attrLabel,attrValue,path)
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character(len=:,kind=C_CHAR), allocatable,target :: attrValue_
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type(c_ptr), target, dimension(1) :: ptr
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if (present(path)) then
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p = trim(path)
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else
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@ -326,6 +329,7 @@ subroutine HDF5_addAttribute_str(loc_id,attrLabel,attrValue,path)
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if(hdferr < 0) error stop 'HDF5 error'
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call h5tcopy_f(H5T_STRING, type_id, hdferr)
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if(hdferr < 0) error stop 'HDF5 error'
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call h5aexists_by_name_f(loc_id,trim(p),attrLabel,attrExists,hdferr)
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if(hdferr < 0) error stop 'HDF5 error'
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if (attrExists) then
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@ -336,6 +340,7 @@ subroutine HDF5_addAttribute_str(loc_id,attrLabel,attrValue,path)
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if(hdferr < 0) error stop 'HDF5 error'
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call h5awrite_f(attr_id, type_id, c_loc(ptr(1)), hdferr)
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if(hdferr < 0) error stop 'HDF5 error'
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call h5aclose_f(attr_id,hdferr)
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if(hdferr < 0) error stop 'HDF5 error'
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call h5tclose_f(type_id,hdferr)
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@ -347,7 +352,7 @@ end subroutine HDF5_addAttribute_str
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!--------------------------------------------------------------------------------------------------
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!> @brief adds a integer attribute to the path given relative to the location
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!> @brief Add an integer attribute to the path given relative to the location.
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!--------------------------------------------------------------------------------------------------
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subroutine HDF5_addAttribute_int(loc_id,attrLabel,attrValue,path)
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@ -361,6 +366,7 @@ subroutine HDF5_addAttribute_int(loc_id,attrLabel,attrValue,path)
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logical :: attrExists
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character(len=:), allocatable :: p
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if (present(path)) then
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p = trim(path)
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else
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@ -369,6 +375,7 @@ subroutine HDF5_addAttribute_int(loc_id,attrLabel,attrValue,path)
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call h5screate_f(H5S_SCALAR_F,space_id,hdferr)
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if(hdferr < 0) error stop 'HDF5 error'
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call h5aexists_by_name_f(loc_id,trim(p),attrLabel,attrExists,hdferr)
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if(hdferr < 0) error stop 'HDF5 error'
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if (attrExists) then
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@ -379,6 +386,7 @@ subroutine HDF5_addAttribute_int(loc_id,attrLabel,attrValue,path)
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if(hdferr < 0) error stop 'HDF5 error'
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call h5awrite_f(attr_id, H5T_NATIVE_INTEGER, attrValue, int([1],HSIZE_T), hdferr)
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if(hdferr < 0) error stop 'HDF5 error'
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call h5aclose_f(attr_id,hdferr)
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if(hdferr < 0) error stop 'HDF5 error'
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call h5sclose_f(space_id,hdferr)
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@ -388,7 +396,7 @@ end subroutine HDF5_addAttribute_int
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!--------------------------------------------------------------------------------------------------
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!> @brief adds a integer attribute to the path given relative to the location
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!> @brief Add a real attribute to the path given relative to the location.
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!--------------------------------------------------------------------------------------------------
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subroutine HDF5_addAttribute_real(loc_id,attrLabel,attrValue,path)
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@ -402,6 +410,7 @@ subroutine HDF5_addAttribute_real(loc_id,attrLabel,attrValue,path)
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logical :: attrExists
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character(len=:), allocatable :: p
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if (present(path)) then
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p = trim(path)
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else
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@ -410,6 +419,7 @@ subroutine HDF5_addAttribute_real(loc_id,attrLabel,attrValue,path)
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call h5screate_f(H5S_SCALAR_F,space_id,hdferr)
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if(hdferr < 0) error stop 'HDF5 error'
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call h5aexists_by_name_f(loc_id,trim(p),attrLabel,attrExists,hdferr)
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if(hdferr < 0) error stop 'HDF5 error'
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if (attrExists) then
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@ -420,6 +430,7 @@ subroutine HDF5_addAttribute_real(loc_id,attrLabel,attrValue,path)
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if(hdferr < 0) error stop 'HDF5 error'
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call h5awrite_f(attr_id, H5T_NATIVE_DOUBLE, attrValue, int([1],HSIZE_T), hdferr)
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if(hdferr < 0) error stop 'HDF5 error'
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call h5aclose_f(attr_id,hdferr)
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if(hdferr < 0) error stop 'HDF5 error'
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call h5sclose_f(space_id,hdferr)
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@ -429,7 +440,67 @@ end subroutine HDF5_addAttribute_real
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!--------------------------------------------------------------------------------------------------
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!> @brief adds a integer attribute to the path given relative to the location
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!> @brief Add a string array attribute to the path given relative to the location.
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!--------------------------------------------------------------------------------------------------
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subroutine HDF5_addAttribute_str_array(loc_id,attrLabel,attrValue,path)
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integer(HID_T), intent(in) :: loc_id
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character(len=*), intent(in) :: attrLabel
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character(len=*), intent(in), dimension(:) :: attrValue
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character(len=*), intent(in), optional :: path
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integer(HID_T) :: attr_id, space_id, filetype_id, memtype_id
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integer :: hdferr
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logical :: attrExists
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character(len=:), allocatable :: p
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type(C_PTR) :: f_ptr
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character(len=:), allocatable, dimension(:), target :: attrValue_
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if (present(path)) then
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p = trim(path)
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else
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p = '.'
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endif
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attrValue_ = attrValue
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call h5tcopy_f(H5T_C_S1,filetype_id,hdferr)
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if(hdferr < 0) error stop 'HDF5 error'
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call h5tset_size_f(filetype_id, int(len(attrValue_)+1,C_SIZE_T),hdferr)
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if(hdferr < 0) error stop 'HDF5 error'
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call h5tcopy_f(H5T_FORTRAN_S1, memtype_id, hdferr)
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if(hdferr < 0) error stop 'HDF5 error'
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call h5tset_size_f(memtype_id, int(len(attrValue_),C_SIZE_T), hdferr)
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if(hdferr < 0) error stop 'HDF5 error'
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call h5screate_simple_f(1,shape(attrValue_,kind=HSIZE_T),space_id, hdferr)
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if(hdferr < 0) error stop 'HDF5 error'
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call h5aexists_by_name_f(loc_id,trim(p),attrLabel,attrExists,hdferr)
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if (attrExists) then
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call h5adelete_by_name_f(loc_id, trim(p), attrLabel, hdferr)
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if(hdferr < 0) error stop 'HDF5 error'
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endif
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call h5acreate_by_name_f(loc_id,trim(p),trim(attrLabel),filetype_id,space_id,attr_id,hdferr)
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if(hdferr < 0) error stop 'HDF5 error'
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f_ptr = c_loc(attrValue_)
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call h5awrite_f(attr_id, memtype_id, f_ptr, hdferr)
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if(hdferr < 0) error stop 'HDF5 error'
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call h5tclose_f(memtype_id,hdferr)
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if(hdferr < 0) error stop 'HDF5 error'
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call h5tclose_f(filetype_id,hdferr)
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if(hdferr < 0) error stop 'HDF5 error'
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call h5aclose_f(attr_id,hdferr)
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if(hdferr < 0) error stop 'HDF5 error'
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call h5sclose_f(space_id,hdferr)
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if(hdferr < 0) error stop 'HDF5 error'
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end subroutine HDF5_addAttribute_str_array
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!--------------------------------------------------------------------------------------------------
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!> @brief Add an integer array attribute to the path given relative to the location.
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!--------------------------------------------------------------------------------------------------
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subroutine HDF5_addAttribute_int_array(loc_id,attrLabel,attrValue,path)
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@ -444,6 +515,7 @@ subroutine HDF5_addAttribute_int_array(loc_id,attrLabel,attrValue,path)
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logical :: attrExists
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character(len=:), allocatable :: p
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if (present(path)) then
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p = trim(path)
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else
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@ -454,6 +526,7 @@ subroutine HDF5_addAttribute_int_array(loc_id,attrLabel,attrValue,path)
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call h5screate_simple_f(1, array_size, space_id, hdferr, array_size)
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if(hdferr < 0) error stop 'HDF5 error'
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call h5aexists_by_name_f(loc_id,trim(p),attrLabel,attrExists,hdferr)
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if(hdferr < 0) error stop 'HDF5 error'
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if (attrExists) then
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@ -464,6 +537,7 @@ subroutine HDF5_addAttribute_int_array(loc_id,attrLabel,attrValue,path)
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if(hdferr < 0) error stop 'HDF5 error'
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call h5awrite_f(attr_id, H5T_NATIVE_INTEGER, attrValue, array_size, hdferr)
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if(hdferr < 0) error stop 'HDF5 error'
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call h5aclose_f(attr_id,hdferr)
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if(hdferr < 0) error stop 'HDF5 error'
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call h5sclose_f(space_id,hdferr)
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@ -473,7 +547,7 @@ end subroutine HDF5_addAttribute_int_array
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!--------------------------------------------------------------------------------------------------
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!> @brief adds a real attribute to the path given relative to the location
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!> @brief Add a real array attribute to the path given relative to the location.
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!--------------------------------------------------------------------------------------------------
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subroutine HDF5_addAttribute_real_array(loc_id,attrLabel,attrValue,path)
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@ -488,6 +562,7 @@ subroutine HDF5_addAttribute_real_array(loc_id,attrLabel,attrValue,path)
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logical :: attrExists
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character(len=:), allocatable :: p
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if (present(path)) then
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p = trim(path)
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else
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@ -498,6 +573,7 @@ subroutine HDF5_addAttribute_real_array(loc_id,attrLabel,attrValue,path)
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call h5screate_simple_f(1, array_size, space_id, hdferr, array_size)
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if(hdferr < 0) error stop 'HDF5 error'
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call h5aexists_by_name_f(loc_id,trim(p),attrLabel,attrExists,hdferr)
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if(hdferr < 0) error stop 'HDF5 error'
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if (attrExists) then
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@ -508,6 +584,7 @@ subroutine HDF5_addAttribute_real_array(loc_id,attrLabel,attrValue,path)
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if(hdferr < 0) error stop 'HDF5 error'
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call h5awrite_f(attr_id, H5T_NATIVE_DOUBLE, attrValue, array_size, hdferr)
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if(hdferr < 0) error stop 'HDF5 error'
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call h5aclose_f(attr_id,hdferr)
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if(hdferr < 0) error stop 'HDF5 error'
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call h5sclose_f(space_id,hdferr)
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@ -517,7 +594,7 @@ end subroutine HDF5_addAttribute_real_array
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!--------------------------------------------------------------------------------------------------
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!> @brief set link to object in results file
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!> @brief Set link to object in results file.
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!--------------------------------------------------------------------------------------------------
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subroutine HDF5_setLink(loc_id,target_name,link_name)
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