Commit Graph

1373 Commits

Author SHA1 Message Date
Martin Diehl a7351deab0 simplified 2018-12-13 08:36:01 +01:00
Martin Diehl 6b5131e0f3 no need to have as a separate state 2018-12-13 07:06:12 +01:00
Martin Diehl dfafddec57 simplifying 2018-12-13 06:59:56 +01:00
Martin Diehl 2aa6b12126 IMPORTANT Behavior change: Slip (Lp) happens in twinned volume fraction
aliases for associate do not have to be defined
2018-12-12 16:13:57 +01:00
Martin Diehl 3bab08fdeb Merge branch 'development' into 56-parallel-hdf5 2018-12-12 07:46:02 +01:00
Martin Diehl fd2d4d856b cleaned + suggested structure to write data 2018-12-12 07:45:20 +01:00
Martin Diehl cb28d10d79 dummy structure to write plasticity results 2018-12-12 06:40:57 +01:00
Martin Diehl 1446e9f4ab polished
sanity checks + documentation
2018-12-12 00:30:20 +01:00
Martin Diehl bf2b074787 make parameters obvious 2018-12-11 23:11:59 +01:00
Martin Diehl c29240c1c8 forestprojection can be calculated centrally 2018-12-11 23:00:56 +01:00
Martin Diehl ef23095332 using function for cleavage system definition
only internally since damage related constitutive laws will be
re-written anyway
2018-12-11 08:03:40 +01:00
Martin Diehl 754e5a960b polishing
sometimes gives segmentation fault/division by zero.
probably the usual problem of dislotwin when running without friction
coefficient B
2018-12-11 07:22:48 +01:00
Martin Diehl 1bcf41100d [skip ci] WIP: cleaning
contains a few bugs
2018-12-11 07:05:37 +01:00
Martin Diehl ee60ce0d98 further simplifications 2018-12-11 01:35:36 +01:00
Martin Diehl 2fac481a26 polishing/sorting 2018-12-11 00:39:50 +01:00
Martin Diehl cee905443b cleaner and safer
- use functions from lattice instead of repeating code
- sanity check for twin nucleation
2018-12-10 08:34:24 +01:00
Martin Diehl 51d8011afe cleaned
- only define variables that are needed
- define variables where they are needed
2018-12-10 08:33:20 +01:00
Martin Diehl efbd50c931 parameters in bold allow easy distinction 2018-12-10 05:52:36 +01:00
Martin Diehl 0f106e77d9 cleaning 2018-12-09 22:20:18 +01:00
Martin Diehl 95826d094c not needed anymore 2018-12-09 22:00:04 +01:00
Martin Diehl 1b571d33a7 using trans-trans interactions from lattice 2018-12-09 21:10:14 +01:00
Martin Diehl 8424ba76ac never used 2018-12-09 20:54:49 +01:00
Martin Diehl 132f417dee Merge remote-tracking branch 'origin/development' into 44-column-major-access-to-interaction-matrices 2018-12-09 20:33:28 +01:00
Martin Diehl 6256de8785 re-implemented sanity checks 2018-12-09 17:53:20 +01:00
Martin Diehl aa9cacdcb0 naming as in dislotwin+phenopowerlaw 2018-12-09 17:36:01 +01:00
Martin Diehl 9e03aae3bf vectorized 2018-12-09 17:35:48 +01:00
Martin Diehl ddecacb172 ready for vectorization 2018-12-09 16:35:28 +01:00
Martin Diehl accd39b27f structuring 2018-12-09 15:58:51 +01:00
Martin Diehl e0cd88d98a preparing for vectorization 2018-12-09 15:38:02 +01:00
Martin Diehl a0b389776d same structure as for dislotwin 2018-12-09 15:00:37 +01:00
Martin Diehl 331a2b9b78 simplified 2018-12-09 14:49:08 +01:00
Martin Diehl 89b054e67b ordered 2018-12-09 14:29:19 +01:00
Martin Diehl 5768356642 PGI compatible 2018-12-06 01:12:15 +01:00
Martin Diehl 72304638f9 PGI fails if optional argument is not present 2018-12-06 00:43:32 +01:00
Martin Diehl 0ed1bd11bd need to write out total increments
otherwise, group/folder of the same name would exist
2018-12-05 13:54:56 +01:00
Martin Diehl deedbc4fda standard conforming line continuation 2018-12-05 08:59:32 +01:00
Martin Diehl 49af6c70a7 PGI compiler complained about kind mismatch 2018-12-05 08:56:26 +01:00
Martin Diehl adffe41ffe writing group structure in file root 2018-12-05 00:05:43 +01:00
Martin Diehl ecb00af147 cleaning and separating functions 2018-12-04 23:09:25 +01:00
Martin Diehl 8f26fc9358 Merge remote-tracking branch 'origin/development' into 56-parallel-hdf5 2018-12-04 22:34:29 +01:00
Martin Diehl 9caa91ee14 polishing 2018-12-04 22:30:07 +01:00
Martin Diehl a34e27cfcd dependentState is more descriptive than microstructure 2018-12-04 21:53:22 +01:00
Martin Diehl 10445606ba simplified API + general polishing 2018-12-04 21:33:32 +01:00
Martin Diehl 3afb14bea1 simplified 2018-12-04 21:05:34 +01:00
Martin Diehl 0a02939138 vectorized 2018-12-04 20:50:02 +01:00
Martin Diehl 91a2748131 simplifying 2018-12-04 20:33:28 +01:00
Martin Diehl e604a3d9cc simplified 2018-12-04 00:09:11 +01:00
Martin Diehl 49b5271ca4 simplified 2018-12-03 11:25:29 +01:00
Martin Diehl fb651e24ef same structure as in phenopowerlaw 2018-12-03 10:48:37 +01:00
Martin Diehl 4b8f150731 Merge branch 'development' into 22-NewStyle_disloUCLA-2 2018-12-03 06:54:52 +01:00
Martin Diehl 17716b4fa7 Merge branch 'NOSlipFCC' into development 2018-12-03 06:35:29 +01:00
Vitesh Shah 801e472497 Made it non-executable 2018-11-30 17:34:26 +01:00
Vitesh Shah e3d8022776 Read and write works for all types of data in parallel with test module passed 2018-11-30 17:33:30 +01:00
Vitesh Shah 508d6cf9ef After merge 2018-11-30 15:25:58 +01:00
Martin Diehl bbba201362 simpler API 2018-11-30 10:38:05 +01:00
Vitesh Shah ab59274c35 Able to read the independent datasets (outside the groups) in parallel 2018-11-30 10:16:04 +01:00
Martin Diehl f02fa9b7b0 no need to parse the file 2018-11-30 08:36:56 +01:00
Martin Diehl 4e86d239de simplified 2018-11-30 08:25:23 +01:00
Martin Diehl c4df2eeac4 no need to know the phase id 2018-11-30 08:02:28 +01:00
Martin Diehl 47e32b39b9 avoid unallocated array for elasticity only 2018-11-30 07:27:23 +01:00
Martin Diehl 0ea5b58338 Merge remote-tracking branch 'origin/development' into 44-column-major-access-to-interaction-matrices 2018-11-29 11:00:36 +01:00
Martin Diehl 0387486a52 same name as in dislotwin 2018-11-29 10:37:06 +01:00
Martin Diehl 39c1df7542 further simplifications 2018-11-29 10:31:02 +01:00
Martin Diehl bbddb2558c cleaning 2018-11-29 09:22:56 +01:00
Martin Diehl 64e9c7fb77 mean free path and threshold stres don't have to be part of the state 2018-11-29 09:10:22 +01:00
Martin Diehl 28ec50a6a9 simpler reading in 2018-11-29 08:44:31 +01:00
Martin Diehl 252f1a6a75 invlabmdaslip does not need to be stored 2018-11-29 08:32:15 +01:00
Martin Diehl 228ef831f0 cleanding
dependentState/microstructure don't need to be part of the complex state
handling
2018-11-29 08:14:20 +01:00
Martin Diehl 9aec5f6db0 shorter notation 2018-11-29 07:27:35 +01:00
Martin Diehl c0663b9fba storing per family makes loops obsolete 2018-11-29 00:04:01 +01:00
Martin Diehl 5dc696c24e calculating Lp is simple if appropriate data structures are used 2018-11-28 22:40:29 +01:00
Martin Diehl 0649eafded simpler way of Lp calculation 2018-11-28 22:22:13 +01:00
Martin Diehl b917ae2cca function to initialize absolute tolerance for state not needed 2018-11-28 17:12:06 +01:00
Martin Diehl 5983496c35 get output from config module 2018-11-28 16:45:45 +01:00
Martin Diehl 6af633aa28 going towards the new API (ipc,ip,el not of interest) 2018-11-28 07:18:50 +01:00
Martin Diehl b923839b1d no need for conversion 33<->6 2018-11-28 06:44:32 +01:00
Martin Diehl 6e22a76a91 parameters from old 22-NewStyle branch 2018-11-28 06:24:58 +01:00
Martin Diehl e4c801d635 introducing parameter structure 2018-11-27 20:00:45 +01:00
Martin Diehl e305e99541 cleaning 2018-11-27 19:49:04 +01:00
Martin Diehl 6c23e9feb8 be lazy, use a function 2018-11-27 19:28:00 +01:00
Martin Diehl 01bc945579 avoid code duplication 2018-11-27 19:19:36 +01:00
Martin Diehl 87b7569eb5 preparing use of kinetics function 2018-11-27 19:01:55 +01:00
Martin Diehl d06dbf2e47 don't need to repeat code 2018-11-27 18:53:01 +01:00
Vitesh Shah d33df38b42 made it non-executable 2018-11-27 18:52:54 +01:00
Vitesh Shah 0265732e08 Parallel writing and reading of integer datasets working 2018-11-27 18:50:51 +01:00
Martin Diehl d89dc6cc00 preparing for the use of kinetics 2018-11-27 18:41:33 +01:00
Martin Diehl d451a3a7a0 calculation of shearrates etc in one function 2018-11-27 18:25:06 +01:00
Martin Diehl bfad81848a kinetics similar to phenopowerlaw 2018-11-26 22:36:32 +01:00
Yi-Chin Yang c13b9718f6 Merge remote-tracking branch 'origin/development' into NOSlipFCC 2018-11-26 16:10:14 +01:00
Vitesh Shah ef1e9cce0d Functionality to avoid creating datasets in HDF5 of zero dimensions 2018-11-26 15:38:31 +01:00
Martin Diehl cf4a0a69fd Intel compiler detected use of unallocated variable
bug was in for a while
2018-11-26 09:15:44 +01:00
Martin Diehl c63d297145 copied from phenopowerlaw 2018-11-26 07:10:43 +01:00
Martin Diehl 8f59a40f48 using new parameter structure for output 2018-11-26 01:34:38 +01:00
Martin Diehl 4c46f3daa5 adopting argument parsing to Phenopowerlaw 2018-11-26 00:14:27 +01:00
Martin Diehl 9f81fa8e9a prevent segmentation fault
post_results better readable
2018-11-25 21:39:59 +01:00
Martin Diehl 6f93f8de04 starting to introduce parallel structure for new style parameter reading 2018-11-25 19:37:46 +01:00
Martin Diehl 2b9a34eac4 Merge remote-tracking branch 'origin/development' into 20-NewStyleDislotwin 2018-11-25 17:12:26 +01:00
Martin Diehl 7cc2892e64 no need to calculate twinned volume fraction as state 2018-11-25 16:14:46 +01:00
Martin Diehl 8a253856f1 no need to perform the state integration 2018-11-25 15:38:14 +01:00
Martin Diehl 8ccec40e35 Merge remote-tracking branch 'origin/development' into 19-NewStylePhenopowerlaw 2018-11-25 13:39:34 +01:00
Martin Diehl 1808b37357 can be easily computed during postprocessing 2018-11-25 11:17:12 +01:00
Martin Diehl 917453d191 polishing 2018-11-25 11:14:09 +01:00
Martin Diehl c0ce95183c can be easily calculated during post processing
and does not have to be a state
2018-11-25 10:59:36 +01:00
Martin Diehl 1d936fc5f2 simple variable rename causes problem with GCC 7.3
probalby a compiler bug
2018-11-24 09:53:18 +01:00
Yi-Chin Yang efe90f86e2 missing comma 2018-11-23 19:00:37 +01:00
Yi-Chin Yang f0359d36b6 adding FCC {110}<110> family 2018-11-23 18:53:50 +01:00
Vitesh Shah e7581f06d9 Fixed error with parallel write 2018-11-23 17:54:02 +01:00
Vitesh Shah 0e55bd6140 started read parallelization but getting errors 2018-11-23 15:49:43 +01:00
Franz Roters 9760b138c2 added link lost during merge 2018-11-23 15:02:35 +01:00
Franz Roters a498e5580a Merge remote-tracking branch 'remotes/origin/54-populate-grains-deprecated' into development 2018-11-23 14:38:22 +01:00
Martin Diehl c7fb868b40 state layout was broken 2018-11-23 07:01:04 +01:00
Martin Diehl 6df68d9428 no need do constantly convert 3x3 matrix <-> 6 vector 2018-11-23 06:04:39 +01:00
Martin Diehl 8b4781cf28 no need to repeat code 2018-11-23 05:37:31 +01:00
Vitesh Shah a6bc2a16f1 Parallel works for groups and included write function for integer data 2018-11-21 19:35:37 +01:00
Vitesh Shah 5cc6d86c61 Added the parallelized functionality for integer datatypes (works for groups?) 2018-11-21 16:57:36 +01:00
Vitesh Shah d00e3105ed Made hdferr < 0 and removed the unnecessary call to h5getspace in hyperslab 2018-11-21 16:10:17 +01:00
Martin Diehl e2e045f75b using 'service function' for allocation of state 2018-11-20 19:46:55 +01:00
Martin Diehl d0be1d61db Merge branch 'development' into 20-NewStyleDislotwin 2018-11-20 19:41:30 +01:00
Martin Diehl ecde7e5953 Merge remote-tracking branch 'origin/development' into 20-NewStyleDislotwin 2018-11-20 19:38:18 +01:00
Martin Diehl baf56a0e94 respect dependencies of inclusion 2018-11-20 15:27:32 +01:00
Martin Diehl 50a1ba6287 hdferr needs to be integer type during compile time of HDF5 library 2018-11-20 15:26:49 +01:00
Vitesh Shah c0481307ee Changed the intent of input argument of dataset to inout 2018-11-20 11:54:51 +01:00
Martin Diehl be8e6cbe57 Merge branch 'development' into 19-NewStylePhenopowerlaw 2018-11-19 20:27:10 +01:00
Martin Diehl ba5b623f14 Merge branch 'development' into improved-HDF5 2018-11-18 19:44:36 +01:00
Martin Diehl dd6f6bba9d planning the forwarding of the results 2018-11-18 12:41:05 +01:00
Martin Diehl dfd624e520 create results file 2018-11-18 11:58:49 +01:00
Martin Diehl fb5b1bfd8e compile results module 2018-11-18 11:32:53 +01:00
Martin Diehl 35211a8468 compilation order should reflect dependency 2018-11-18 11:24:55 +01:00
Martin Diehl 366c63e273 CONFIG is a keyword for Cmake 2018-11-18 11:21:43 +01:00
Martin Diehl 8b1785c05c parallel writing for pReal 2018-11-18 09:47:50 +01:00
Martin Diehl 73ca289322 F_aim was wrong in case of MPI parallelization 2018-11-17 16:50:19 +01:00
Martin Diehl d8a425b464 prevent error
h5close_f will give an error if h5open_f was not called.
according to the manual, calling h5open_f multiple time is not a problem
2018-11-17 15:00:51 +01:00
Martin Diehl 89504c3c52 will not work with python3 2018-11-17 08:08:27 +01:00
Martin Diehl d5963b403a setting the property when opening the file 2018-11-16 07:05:43 +01:00
Martin Diehl 9b32fe6dbd MPI file access needed for output 2018-11-15 07:28:34 +01:00
Martin Diehl b48bd3a082 keep only general functionality in HDF5_results 2018-11-15 07:07:59 +01:00
Martin Diehl 58f2a25ffd clearer separation of tasks
1) general HDF5_utilities (for results, restart, ...)
2) results related helpers (based on HDF5_utilities)
2018-11-15 06:49:31 +01:00
Martin Diehl e6c7a73886 first step to include HDF5 in MSC.Marc 2018-11-14 13:12:08 +01:00
Martin Diehl fc5300817d Merge remote-tracking branch 'origin/development' into 42-new-coding-style-for-homogenization-NEW 2018-11-13 23:42:39 +01:00
Franz Roters 174997563e Merge branch '47-save-restart-information-in-hdf5' into 'development'
Resolve "save restart information in HDF5"

See merge request damask/DAMASK!44
2018-11-12 08:42:22 +01:00
Franz Roters 475ca29f3c close all objects of type integer(HID_T) created by native hdf5 routines 2018-11-09 16:11:19 +01:00
Franz Roters 71cb635b10 missing link 2018-11-07 15:13:16 +01:00
Franz Roters e18f39d64c added support for Marc 2018.1 2018-11-07 14:11:10 +01:00
Martin Diehl 7386c6ff9c no need for "use" statements
will be inherited from outer function
2018-11-04 20:16:12 +01:00
Martin Diehl 811a02eb51 better readable 2018-11-04 09:19:24 +01:00
Martin Diehl c863419a0b cleaning 2018-11-04 09:00:35 +01:00
Martin Diehl 7a37ea25f3 cleaning 2018-11-04 08:49:40 +01:00
Martin Diehl 78f4d4c5ee simplified 2018-11-04 08:22:59 +01:00
Martin Diehl ff2b693f1e simplified 2018-11-04 07:56:27 +01:00
Martin Diehl 572576cf88 these functions have no side effects 2018-11-04 07:33:57 +01:00
Martin Diehl 4dc3761fea setting of (random) cluster orientations remove
can be easily done in a pre processing step
2018-11-04 07:29:39 +01:00
Martin Diehl f471911e01 fixed array out of bounds during initialization
happened for inactive homogenization
2018-11-04 07:27:25 +01:00
Martin Diehl 3c11905f63 cleaning 2018-11-03 23:43:25 +01:00
Martin Diehl 8127d85be1 simplifying 2018-11-03 23:13:20 +01:00
Martin Diehl 078729bfa3 using dependent state 2018-11-03 22:43:52 +01:00
Martin Diehl 70998f7f9a cleaning 2018-11-03 22:00:40 +01:00
Martin Diehl 69079b6558 was not used at all 2018-11-03 21:16:36 +01:00
Martin Diehl 0aa21e507a functions only used within updatestate 2018-11-03 21:11:43 +01:00
Martin Diehl c16fdec749 misplaced debug statement
debugging the individual constituents should be done by the constitutive
laws
2018-11-03 21:00:54 +01:00
Martin Diehl 85a2f19b18 wrong averaging 2018-11-03 20:03:23 +01:00
Martin Diehl 0447ea9d74 starting to introduce state pointers 2018-11-03 20:00:02 +01:00
Martin Diehl fdbc20b739 cleaned and unified 2018-11-03 19:29:00 +01:00
Martin Diehl 08c692bfc1 passing in instance simplifies things a lot 2018-11-03 16:40:17 +01:00
Martin Diehl a0c3a65b39 Noutput not needed anymore 2018-11-03 15:41:54 +01:00
Martin Diehl a678e9b94f bugfixes
flaws introduced in 42-xx branch and detected by new test
- outputsize was wrong
- nconstituents is product along the 3 directions, not the sum
2018-11-03 15:13:11 +01:00
Martin Diehl c5b98e544a Merge remote-tracking branch 'origin/development' into 42-new-coding-style-for-homogenization 2018-11-03 11:30:12 +01:00
Martin Diehl f88b78195a not need to repeat shape definition 2018-10-26 10:20:45 +02:00
Martin Diehl c413df7ed2 a little cleaning 2018-10-18 22:54:33 +02:00
Martin Diehl 49c7a6c524 sorting 2018-10-18 22:20:26 +02:00
Martin Diehl f71e067f5e using functionality from lattice 2018-10-18 21:41:17 +02:00
Martin Diehl d7fa3a9791 just sorting 2018-10-18 21:34:26 +02:00
Martin Diehl 59399f2cd2 sanity checks 2018-10-18 19:06:21 +02:00
Martin Diehl 33d816a5d0 polishing 2018-10-17 23:56:57 +02:00
Martin Diehl 121d146a35 using more central functions 2018-10-17 23:20:39 +02:00
Martin Diehl 4320061554 using central functionality 2018-10-17 23:13:47 +02:00
Martin Diehl 8017fccbc3 adjusting to phenopowerlaw 2018-10-17 22:18:33 +02:00
Martin Diehl 2fd348f251 just re-ordering 2018-10-17 21:47:50 +02:00
Martin Diehl 6b4b5b511f don't let dipole formation be undefined 2018-10-17 21:41:21 +02:00
Martin Diehl b7bc5afa90 Merge remote-tracking branch 'origin/development' into 20-NewStyleDislotwin 2018-10-17 20:10:49 +02:00
Martin Diehl 7ac96bd630 polishing 2018-10-17 00:01:21 +02:00
Martin Diehl d92ab04892 Merge branch 'development' into 19-NewStylePhenopowerlaw 2018-10-15 22:38:55 +02:00
Martin Diehl be8d7e19fe missing use statement caused compilation error 2018-10-15 22:38:34 +02:00
Martin Diehl 2ca7807438 cleavage systems avaialable as function 2018-10-15 22:29:23 +02:00
Martin Diehl ad1a64c338 rename was missing 2018-10-15 06:01:38 +02:00
Martin Diehl 57ca93c3c9 added missing allocation 2018-10-15 05:28:52 +02:00
Martin Diehl e5ec5ed54c check prerequisites as early as possible 2018-10-15 05:03:53 +02:00
Martin Diehl 767ca0edd4 avoid code repetition 2018-10-14 20:16:30 +02:00
Martin Diehl a311cc7673 Merge remote-tracking branch 'origin/development' into 19-NewStylePhenopowerlaw 2018-10-14 15:53:50 +02:00
Martin Diehl 6599aa487c kinetics_slip does not seem to be the problem 2018-10-14 15:53:24 +02:00
Martin Diehl 1839228add sorting
new mappings. Needs more work (don't forget https://xkcd.com/927)
2018-10-14 12:27:42 +02:00
Martin Diehl 943fa764c0 not needed 2018-10-14 11:15:07 +02:00
Martin Diehl 4ac12d1dc5 removed hybridIA 2018-10-14 10:11:26 +02:00
Martin Diehl 4c780226d1 polishing 2018-10-14 09:27:34 +02:00
Martin Diehl 17c21dfc92 mesh_element should not be used anymore 2018-10-13 18:21:13 +02:00
Martin Diehl 06d71d9d2c Merge remote-tracking branch 'origin/development' into 42-new-coding-style-for-homogenization 2018-10-13 17:27:25 +02:00
Martin Diehl 513faa2218 investigating the reason for the poor performance 2018-10-13 11:29:07 +02:00
Franz Roters d9fbf2ab50 Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development 2018-10-13 10:52:03 +02:00
Franz Roters 905b5a33eb added link for Marc2018 2018-10-13 10:50:20 +02:00
Franz Roters 1a458108bc added support for Marc2018 2018-10-13 10:26:42 +02:00
Martin Diehl fa9cbe13c9 do concurrent not safe here 2018-10-13 08:35:36 +02:00
Martin Diehl 6207781eb6 [skip ci] [skip sc] streamlining 2018-10-12 17:24:46 +02:00
Franz Roters d1561e867a Merge branch '44-column-major-access-to-interaction-matrices' into 'development'
Resolve "column-major access to interaction matrices"

Closes #44

See merge request damask/DAMASK!43
2018-10-12 13:03:22 +02:00
Martin Diehl 5597ee338e simplifying
- whole type is private, no need to make the components private
- target not needed when using associate
2018-10-12 08:26:24 +02:00
Martin Diehl 854d3ab774 clearer logic for controlling dipole formation 2018-10-12 08:23:56 +02:00
Vitesh Shah 38f9807c42 cleaning up the codes 2018-10-11 18:00:01 +02:00
Martin Diehl 51a3308a3d bugfix: same tau was used for all systems 2018-10-11 17:28:00 +02:00
Vitesh Shah cd2fb9f417 adding prefixes to writing of datasets under groups 2018-10-10 19:08:44 +02:00
Vitesh Shah fa13e71493 removed typo(&) 2018-10-10 18:09:10 +02:00
Vitesh Shah 78db0ecb3c reading and writing of subroutines of datasets of different ranks 2018-10-10 17:54:55 +02:00
Martin Diehl 7217cdac1b Merge branch '29-rename-mesh_element-array' into development 2018-10-10 15:55:23 +02:00
Martin Diehl ef1899cfd0 improved error reporting
- tell user specifically whether number of systems is too high or too
low
- c/a sanity check can be done centrally
2018-10-10 07:42:07 +02:00
Philip Eisenlohr f0b9c0caf7 polishing and encapsulating of Abaqus-specific local variables 2018-10-09 17:57:10 -04:00
Franz Roters 1d0584dcdf typo in message 2018-10-09 16:44:47 +02:00
Martin Diehl d81c9f744e avoid errors by consistently closing objects
general bugfixes, works now
2018-10-09 16:17:21 +02:00
Martin Diehl 2064ed80fd more flexible file open routine 2018-10-09 15:15:08 +02:00
Martin Diehl 8626ba1ce6 adjusted variable names and added comments 2018-10-09 14:46:57 +02:00
Martin Diehl 48403c37b7 initializing and closing the HDF5 library 2018-10-09 14:13:51 +02:00
Martin Diehl e7e0cf7118 preprocessor statements are case sensitive..
... and the PETSc variable is PETSc, not PETSC
2018-10-09 13:57:29 +02:00
Martin Diehl e3943d282a Merge branch 'development' into 47-save-restart-information-in-hdf5 2018-10-09 13:51:58 +02:00
Vitesh Shah 09ba95b029 non-executable 2018-10-09 10:58:45 +02:00
Vitesh Shah 70c746a8f1 Interfacing for subroutines to identify real and integer data 2018-10-09 10:57:06 +02:00
Martin Diehl e71ec2057e hotfix
does not seem to cause trouble here, but better be safe
2018-10-09 08:37:03 +02:00
Martin Diehl 4da3923440 more straight-forward definition of array shape 2018-10-08 23:54:45 +02:00
Martin Diehl 05aae4f7eb removed forgotten debug statement 2018-10-08 23:34:05 +02:00
Martin Diehl 50f0362aa1 Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development 2018-10-08 23:33:31 +02:00
Martin Diehl 6064daceda do error check earlier
array out of bounds happened already before the check
2018-10-08 23:32:46 +02:00
Martin Diehl b51c3b5a07 handling files without LF at last line correctly 2018-10-08 23:27:06 +02:00
Philip Eisenlohr 225a48021d foramtting of random_seed output to align with rest 2018-10-08 17:01:56 -04:00
Martin Diehl 78b5fa466d fixed hick-up in lattice definitions 2018-10-08 19:32:18 +02:00
Martin Diehl 71d80cc203 sanity check too strong
still makes sense to have, but some tests need to be updated before
setting it active again
2018-10-08 13:27:15 +02:00
Martin Diehl 2a79f7ea61 taking care of c/a for hex and bct 2018-10-08 13:25:40 +02:00
Martin Diehl 5efcad952a avoid type conversion
more systematic checking of correct input parameters
2018-10-08 08:28:56 +02:00
Martin Diehl 302cf9b6c2 bugfix, now inline with code from initializeStructure 2018-10-07 22:16:18 +02:00
Martin Diehl facb1c2407 unified error checking 2018-10-07 20:03:45 +02:00
Martin Diehl 0e17b17b90 using full precision 2018-10-07 18:40:02 +02:00
Martin Diehl 34e0aca564 using full precision 2018-10-07 18:18:24 +02:00
Martin Diehl a53488d666 calculation of slip/twin/trans/damage-coordinate system was wrong 2018-10-07 15:44:13 +02:00
Martin Diehl 032c35a499 WIP: Calculation of elasticity matrices for twin and trans 2018-10-06 10:42:25 +02:00
Martin Diehl 3a2f86df1c non-schmid is always bcc 2018-10-05 23:04:06 +02:00
Martin Diehl 81a77b508a check for array size was off by 1 2018-10-05 22:46:53 +02:00
Martin Diehl 3a39c2d68c [skip ci] strings will be converted to lowercase 2018-10-05 17:54:24 +02:00
Martin Diehl 0cddf36106 typo, using value of p_slip for q 2018-10-05 17:47:46 +02:00
Martin Diehl 2a51e528bd Merge branch 'development' into 44-column-major-access-to-interaction-matrices 2018-10-05 11:11:20 +02:00
Martin Diehl 40cf7f134d Merge branch '44-column-major-access-to-interaction-matrices' of magit1.mpie.de:damask/DAMASK into 44-column-major-access-to-interaction-matrices 2018-10-05 11:08:29 +02:00
Martin Diehl aa34b83978 avoid array out of bounds
allows to handle un- or partly defined non schmid coefficients
2018-10-05 10:36:44 +02:00
Martin Diehl a560fff2ac [skip ci] [skip sc] generic interfaces for HDF5 operations
most existing HDF5 functions are only designed for writing output files
and more general functionality is needed for storing the restart data
2018-10-05 09:03:20 +02:00
Martin Diehl 47a748831f Cannot write out resolved stress including non schmid
Would need to write out tau_pos and tau_neg separately, so limit to
resolved stress in the sense of Schmid
2018-10-05 07:26:13 +02:00
Martin Diehl 6ccbc5e4e6 characteristing shear is defined per system 2018-10-05 07:20:51 +02:00
Martin Diehl e74a852ef7 new style is noticable slower
runtime (polycrystal example) increased from 70s to 90s.
Need to figure out how to write readable AND fast code
2018-10-05 06:38:20 +02:00
Martin Diehl 3a00fcde16 WIP: characteristic shear calculated in lattice 2018-10-05 05:09:31 +02:00
Martin Diehl fda2676365 calculate only if required 2018-10-05 04:54:47 +02:00
Martin Diehl 79b0efc678 also using nonSchmid matrix from lattice 2018-10-04 21:20:42 +02:00
Martin Diehl 35956ce0c8 needs to be multiplikative 2018-10-04 21:06:57 +02:00
Vitesh Shah a6ebdfc1ff Reading and writing not very efficient method 2018-10-04 17:00:24 +02:00
Martin Diehl edb94b8bc9 using the same kinetics for slip everywhere 2018-10-04 16:12:14 +02:00
Martin Diehl 12d053d123 strange parameter caused simulation not to start if not defined
probably a leftover. now only bothers you if twin systems are defined
2018-10-04 14:54:00 +02:00
Martin Diehl f1750b4eef avoiding use of unitialized arrays 2018-10-04 14:51:32 +02:00
Martin Diehl cd7f285686 prevent use of unallocated array
interaction matrices are used even if no slip/twin systems defined
2018-10-04 07:17:00 +02:00
Martin Diehl dc289a278b clearer code
homogenization is defined per element, not per IP
hence, use material_homogenizationAt instead of deprecated
material_homog which pretends a dependency on the integration point
2018-10-04 06:48:33 +02:00
Martin Diehl df473302f4 consistent (and better understandable) names 2018-10-04 06:03:48 +02:00
Martin Diehl f494803c76 fixed tangent calculation 2018-10-03 16:40:40 +02:00
Martin Diehl ec77d4450b checking for required things 2018-10-03 09:17:06 +02:00
Martin Diehl db645efda7 function to calculate nonSchmid matrix 2018-10-03 08:49:23 +02:00
Martin Diehl 103b46ecbb don't repeate code over different plastic_xxx modules 2018-10-03 07:58:02 +02:00
Martin Diehl 89e03be699 also building interactions for slip-twin and twin-slip 2018-10-03 07:51:11 +02:00
Martin Diehl 0cac6ce0d2 allocating to wrong size 2018-10-03 07:36:57 +02:00
Martin Diehl ba383336f5 only one projection matrix required for all (non)schmid projections
following the example from plastic_nonlocal
2018-10-03 07:23:18 +02:00
Martin Diehl d718521890 polishing 2018-10-03 07:13:30 +02:00
Martin Diehl 67c55965e9 segmentation fault, tried LHS with scalar
Nxx per system is stored in LATTICE_yyy_NxxxSYSTEM
Using CAPITALS for parameters improves readbility
2018-10-03 06:45:42 +02:00
Martin Diehl 97d2c2b353 mesh_element(1) has a size of 4
fixed sigsegv
2018-10-02 22:54:44 +02:00
Martin Diehl 740325165d Merge branch 'development' into 20-NewStyleDislotwin 2018-10-02 20:37:11 +02:00
Martin Diehl 0047e6c14c correct calculation of dGdot_dTau
needs to take drag coefficient into account for the derivative
2018-10-02 18:09:57 +02:00
Martin Diehl 9cc3a77e01 mean velocity of dislocation corrected for higher temperatures
- v_wait: obstacle spacing over waiting time (effective velocity)
- v_run:  'true' velocity of a dislocation moving between obstacles
for higher temperatures v_run becomes important and bounds the velocity
2018-10-02 15:56:18 +02:00
Martin Diehl 5d1e648d17 drag coefficient B introduced and read in 2018-10-02 15:25:40 +02:00
Martin Diehl 384a785805 more sevice functions use
still trying
2018-10-01 23:02:31 +02:00
Martin Diehl ff2614b757 using 'service functions' from lattice
get rid of many global array on the long run
2018-10-01 22:48:14 +02:00
Martin Diehl a943940760 Merge branch 'development' into 44-column-major-access-to-interaction-matrices 2018-10-01 22:32:38 +02:00
Martin Diehl 98296a978e Merge branch 'development' into 29-rename-mesh_element-array 2018-10-01 22:29:31 +02:00
Martin Diehl e7b8adadd0 passing in instance and of is much easier
also using always the full Mandel stress tensor to avoid repeated
conversion
2018-10-01 22:14:54 +02:00
Martin Diehl ddfbe19f02 Merge branch 'development' into 20-NewStyleDislotwin 2018-10-01 21:16:11 +02:00
Martin Diehl 27bde05529 Merge branch '38-introduce-rudimentary-PETSc-based-FEM-solver' into 'development'
Resolve "Introduce Rudimentary PETSc based FEM solver"

Closes #38

See merge request damask/DAMASK!41
2018-10-01 21:10:03 +02:00
Franz Roters d5cf7d2144 Merge branch '19-NewStylePhenopowerlaw' into 'development'
Resolve "New coding style for phenopowerlaw"

See merge request damask/DAMASK!39
2018-10-01 16:08:05 +02:00
Martin Diehl 49a4202e26 not needed here 2018-09-29 10:31:45 +02:00
Martin Diehl 14509876d4 error == 0 is normal termination 2018-09-29 09:57:53 +02:00
Martin Diehl 637544509e rewind needed
the file is read twice from beginning to end
2018-09-28 10:06:21 +02:00
Vitesh Shah 8619b49e20 made it nonexecutable 2018-09-28 08:47:00 +02:00
Vitesh Shah 8bd0cb3b25 Made it non executable 2018-09-28 08:45:52 +02:00
Vitesh Shah 6efde5f4ce Combined the dataset creation and writing dataset in single subroutine. Created group for looped writing. 2018-09-28 08:41:29 +02:00
Martin Diehl b141252f1f doing the same things in the same way in both solvers 2018-09-28 08:06:22 +02:00
Martin Diehl d1f614991e merging good style mutually FEM <-> Spectral 2018-09-28 07:49:52 +02:00
Martin Diehl 6780217193 adopted from DAMASK_spectral 2018-09-28 07:25:32 +02:00
Martin Diehl e8f687a99c typo, Abaqus/Marc did not compile 2018-09-27 20:18:37 +02:00
Martin Diehl 822bc4dbbf Merge branch 'development' into 29-rename-mesh_element-array 2018-09-27 20:12:09 +02:00
Martin Diehl 4c057ba529 both solvers can share quit 2018-09-27 20:09:59 +02:00
Chuanlai Liu b391ad304d tensor input/output is of the form 11,12,13, 21,22,23, 31,32,33. Thus row index i is slow, while column index j is fast 2018-09-27 11:53:45 +02:00
Martin Diehl 6509775d41 cleaning
avoiding compiler warnings and confusion of the user
2018-09-27 08:23:30 +02:00
Vitesh Shah 5b52ac91e5 Revert "made it non executable"
This reverts commit 05c784aefc.
2018-09-26 09:28:47 +02:00
Martin Diehl c3380aa9f3 using wrong (uninitialized) stress 2018-09-26 09:22:12 +02:00
Vitesh Shah 2edf8f7f53 Need to commit this before reverting the changes in other files 2018-09-26 09:21:53 +02:00
Vitesh Shah 3408282755 windows and linux editor incompatibility 2018-09-25 16:49:25 +02:00
Vitesh Shah 05c784aefc made it non executable 2018-09-25 16:48:02 +02:00
Vitesh Shah b71896d4b6 writing of multidimensional dataset into hdf5 does not appear as multiple pages in hdfviewer 2018-09-25 16:42:43 +02:00
Martin Diehl ceb385ef39 calcMode not needed for spectral and FEM 2018-09-23 21:31:30 +02:00
Martin Diehl c42eb87a33 using arrays with new names 2018-09-23 20:53:35 +02:00
Martin Diehl 72b87b0a9b better name 2018-09-23 19:58:43 +02:00
Martin Diehl f701910c71 Merge branch '38-introduce-rudimentary-PETSc-based-FEM-solver' of magit1.mpie.de:damask/DAMASK into 38-introduce-rudimentary-PETSc-based-FEM-solver 2018-09-23 19:32:19 +02:00
Martin Diehl ebef12e446 syntax errors in declaration 2018-09-23 19:04:17 +02:00
Martin Diehl 67483487ea more descriptive names 2018-09-23 18:50:54 +02:00
Martin Diehl 854d99250c mesh_element(1,:) only used for debug output
set to -1 at the moment to indicate that it is not used.
Re-implementation should be done for MSC.Marc and Abaqus only.
2018-09-23 18:42:49 +02:00
Martin Diehl 4b14cc5560 calcmode only needed for Abaqus and MSC.Marc 2018-09-23 18:06:18 +02:00
Martin Diehl cf6d388a6b consistent order of solver-specific functionality 2018-09-23 17:57:48 +02:00
Martin Diehl 5936397ae7 introducing better names
allows further simplifications as we do not store max and per elem
values any more for number of integration points and number of cell
nodes
2018-09-23 17:37:57 +02:00
Martin Diehl 2fe2c4ca45 leaner syntax with sourced allocation 2018-09-23 17:26:13 +02:00
Martin Diehl 51390b1acf Nelems /= NcpElems only in case of Abaqus/MSC.Marc 2018-09-23 17:05:01 +02:00
Martin Diehl 5814e07021 simplified 2018-09-23 16:55:03 +02:00
Martin Diehl e3f2ad34b2 not needed 2018-09-23 16:32:13 +02:00
Martin Diehl bd60018513 not needed for spectral 2018-09-23 15:57:21 +02:00
Martin Diehl c1b8854132 only needed for commercial solvers 2018-09-23 15:31:19 +02:00
Martin Diehl 4862aca340 grouping solver specific variables for better readability 2018-09-23 15:27:51 +02:00
Martin Diehl db45b7615a drop support for heterogeneous meshes
heterogeneous meshes are neither advisable nor typically used
2018-09-23 15:24:14 +02:00
Martin Diehl 519cd840bd cleaning 2018-09-23 15:19:23 +02:00
Pratheek Shanthraj 109ed4308f change in tabulation order. should now be working correctly 2018-09-23 03:14:23 +02:00
Martin Diehl 9eb318b9bf Merge branch '38-introduce-rudimentary-PETSc-based-FEM-solver' of magit1.mpie.de:damask/DAMASK into 38-introduce-rudimentary-PETSc-based-FEM-solver 2018-09-22 14:54:58 +02:00
Pratheek Shanthraj d9bdf53628 quadrature weights defined twice for some reason 2018-09-22 12:55:23 +02:00
Pratheek Shanthraj ffcadc1d86 use displacements instead of coordinates 2018-09-22 12:54:45 +02:00
Pratheek Shanthraj 4a25520828 removed debug write statements 2018-09-22 12:53:33 +02:00
Pratheek Shanthraj 6c21c60c70 corrected nbasis 2018-09-22 12:53:02 +02:00
Pratheek Shanthraj becd959913 dmda not needed 2018-09-22 12:52:29 +02:00
Pratheek Shanthraj 81ced06393 order --> degree 2018-09-22 12:51:02 +02:00
Pratheek Shanthraj 22c1436af6 working with petsc 3.10 2018-09-22 12:49:56 +02:00
Pratheek Shanthraj c9a4609290 reading in BCs correctly 2018-09-22 12:48:57 +02:00
Martin Diehl 42bc1b468a cleaning+adopting to petsc-3.10 2018-09-22 11:19:08 +02:00
Martin Diehl a95e2b8083 Merge branch 'PETSc3.10' into 38-introduce-rudimentary-PETSc-based-FEM-solver 2018-09-22 10:36:31 +02:00
Martin Diehl f590851a78 Merge branch '38-introduce-rudimentary-PETSc-based-FEM-solver' of magit1.mpie.de:damask/DAMASK into 38-introduce-rudimentary-PETSc-based-FEM-solver 2018-09-22 10:33:20 +02:00
Martin Diehl 80914470cc most probably pInt and PetscInt is the same 2018-09-22 10:32:26 +02:00
Jaeyong Jung 4ddb8d843c modified DMGetDefaultGlobalSection to DMGetGlobalSection 2018-09-21 14:08:44 +02:00
Jaeyong Jung 9150844c96 Merge branch '38-introduce-rudimentary-PETSc-based-FEM-solver' of magit1.mpie.de:damask/DAMASK into 38-introduce-rudimentary-PETSc-based-FEM-solver 2018-09-21 10:13:27 +02:00
Martin Diehl 180105d3ce external statements will not work if interfaces exist
we're currently providing a patch for PETSc with interfaces for all
functions that we use
2018-09-21 08:25:35 +02:00
Martin Diehl ff241ae4a6 only use required includes 2018-09-21 08:19:36 +02:00
Martin Diehl bd9a02bfe2 creating hdf5 file to contain restart information
first quick and dirty implementation to get started. needs polishing and
renaming
2018-09-20 19:42:58 +02:00
Jaeyong Jung abe5c1d825 Merge branch '38-introduce-rudimentary-PETSc-based-FEM-solver' of magit1.mpie.de:damask/DAMASK into 38-introduce-rudimentary-PETSc-based-FEM-solver 2018-09-20 09:57:30 +02:00
Martin Diehl b775d5084b more (temporarly) cleaning 2018-09-20 08:26:59 +02:00
Martin Diehl 1545a53ea9 ID do not exist at the moment 2018-09-20 08:00:39 +02:00
Martin Diehl cc262ae198 Merge branch 'development' into 38-introduce-rudimentary-PETSc-based-FEM-solver 2018-09-20 07:29:19 +02:00
Martin Diehl 3e7b80a3ef debug only available if compiled in debug mode 2018-09-20 07:27:12 +02:00
Martin Diehl fc016bbc6e Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development 2018-09-20 07:16:03 +02:00
Martin Diehl 310ea62964 only print out the essential information 2018-09-20 06:58:31 +02:00
Martin Diehl fcff6b908a can be easily computed during post processing 2018-09-20 06:40:23 +02:00
Martin Diehl 901355d2ae don't use unnecessarily long names 2018-09-20 06:27:53 +02:00
Martin Diehl df0464c31b use (import) debug variables only when needed 2018-09-20 06:24:03 +02:00