Merge branch '47-save-restart-information-in-hdf5' into 'development'
Resolve "save restart information in HDF5" See merge request damask/DAMASK!44
This commit is contained in:
Franz Roters
commit
174997563e
222
src/CPFEM2.f90
222
src/CPFEM2.f90
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@ -37,6 +37,8 @@ subroutine CPFEM_initAll()
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mesh_init
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use material, only: &
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material_init
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use HDF5_utilities, only: &
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HDF5_utilities_init
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use lattice, only: &
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lattice_init
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use constitutive, only: &
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@ -70,6 +72,7 @@ subroutine CPFEM_initAll()
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call mesh_init
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call lattice_init
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call material_init
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call HDF5_utilities_init
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call constitutive_init
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call crystallite_init
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call homogenization_init
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@ -78,7 +81,6 @@ subroutine CPFEM_initAll()
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end subroutine CPFEM_initAll
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!--------------------------------------------------------------------------------------------------
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!> @brief allocate the arrays defined in module CPFEM and initialize them
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!--------------------------------------------------------------------------------------------------
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@ -89,7 +91,7 @@ subroutine CPFEM_init
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compiler_options
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#endif
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use prec, only: &
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pInt
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pInt, pReal, pLongInt
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use IO, only: &
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IO_read_realFile,&
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IO_read_intFile, &
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@ -120,10 +122,19 @@ subroutine CPFEM_init
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crystallite_Li0, &
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crystallite_dPdF0, &
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crystallite_Tstar0_v
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use hdf5
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use HDF5_utilities, only: &
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HDF5_openFile, &
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HDF5_openGroup2, &
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HDF5_read
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use DAMASK_interface, only: &
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getSolverJobName
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implicit none
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integer(pInt) :: k,l,m,ph,homog
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character(len=1024) :: rankStr
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character(len=1024) :: rankStr, PlasticItem, HomogItem
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integer(HID_T) :: fileReadID, groupPlasticID, groupHomogID
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integer :: hdferr
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mainProcess: if (worldrank == 0) then
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write(6,'(/,a)') ' <<<+- CPFEM init -+>>>'
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@ -135,64 +146,40 @@ subroutine CPFEM_init
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! *** restore the last converged values of each essential variable from the binary file
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if (restartRead) then
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if (iand(debug_level(debug_CPFEM), debug_levelExtensive) /= 0_pInt) then
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write(6,'(a)') '<< CPFEM >> restored state variables of last converged step from binary files'
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write(6,'(a)') '<< CPFEM >> restored state variables of last converged step from hdf5 file'
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flush(6)
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endif
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write(rankStr,'(a1,i0)')'_',worldrank
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call IO_read_intFile(777,'recordedPhase'//trim(rankStr),modelName,size(material_phase))
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read (777,rec=1) material_phase; close (777)
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call IO_read_realFile(777,'convergedF'//trim(rankStr),modelName,size(crystallite_F0))
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read (777,rec=1) crystallite_F0; close (777)
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call IO_read_realFile(777,'convergedFp'//trim(rankStr),modelName,size(crystallite_Fp0))
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read (777,rec=1) crystallite_Fp0; close (777)
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call IO_read_realFile(777,'convergedFi'//trim(rankStr),modelName,size(crystallite_Fi0))
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read (777,rec=1) crystallite_Fi0; close (777)
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call IO_read_realFile(777,'convergedLp'//trim(rankStr),modelName,size(crystallite_Lp0))
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read (777,rec=1) crystallite_Lp0; close (777)
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call IO_read_realFile(777,'convergedLi'//trim(rankStr),modelName,size(crystallite_Li0))
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read (777,rec=1) crystallite_Li0; close (777)
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call IO_read_realFile(777,'convergeddPdF'//trim(rankStr),modelName,size(crystallite_dPdF0))
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read (777,rec=1) crystallite_dPdF0; close (777)
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call IO_read_realFile(777,'convergedTstar'//trim(rankStr),modelName,size(crystallite_Tstar0_v))
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read (777,rec=1) crystallite_Tstar0_v; close (777)
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call IO_read_realFile(777,'convergedStateConst'//trim(rankStr),modelName)
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m = 0_pInt
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readPlasticityInstances: do ph = 1_pInt, size(phase_plasticity)
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do k = 1_pInt, plasticState(ph)%sizeState
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do l = 1, size(plasticState(ph)%state0(1,:))
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m = m+1_pInt
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read(777,rec=m) plasticState(ph)%state0(k,l)
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enddo; enddo
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enddo readPlasticityInstances
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close (777)
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call IO_read_realFile(777,'convergedStateHomog'//trim(rankStr),modelName)
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m = 0_pInt
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readHomogInstances: do homog = 1_pInt, material_Nhomogenization
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do k = 1_pInt, homogState(homog)%sizeState
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do l = 1, size(homogState(homog)%state0(1,:))
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m = m+1_pInt
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read(777,rec=m) homogState(homog)%state0(k,l)
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enddo; enddo
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enddo readHomogInstances
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close (777)
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fileReadID = HDF5_openFile(trim(getSolverJobName())//trim(rankStr)//'.hdf5')
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call HDF5_read(material_phase, fileReadID,'recordedPhase')
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call HDF5_read(crystallite_F0, fileReadID,'convergedF')
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call HDF5_read(crystallite_Fp0, fileReadID,'convergedFp')
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call HDF5_read(crystallite_Fi0, fileReadID,'convergedFi')
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call HDF5_read(crystallite_Lp0, fileReadID,'convergedLp')
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call HDF5_read(crystallite_Li0, fileReadID,'convergedLi')
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call HDF5_read(crystallite_dPdF0, fileReadID,'convergeddPdF')
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call HDF5_read(crystallite_Tstar0_v,fileReadID,'convergedTstar')
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groupPlasticID = HDF5_openGroup2(fileReadID,'PlasticPhases')
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do ph = 1_pInt,size(phase_plasticity)
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write(PlasticItem,*) ph,'_'
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call HDF5_read(plasticState(ph)%state0,groupPlasticID,trim(PlasticItem)//'convergedStateConst')
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enddo
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groupHomogID = HDF5_openGroup2(fileReadID,'HomogStates')
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do homog = 1_pInt, material_Nhomogenization
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write(HomogItem,*) homog,'_'
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call HDF5_read(homogState(homog)%state0, groupHomogID,trim(HomogItem)//'convergedStateHomog')
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enddo
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restartRead = .false.
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endif
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end subroutine CPFEM_init
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!--------------------------------------------------------------------------------------------------
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!> @brief forwards data after successful increment
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!--------------------------------------------------------------------------------------------------
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@ -241,91 +228,82 @@ subroutine CPFEM_age()
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use IO, only: &
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IO_write_jobRealFile, &
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IO_warning
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use DAMASK_interface
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use HDF5_utilities, only: &
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HDF5_openFile, &
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HDF5_closeFile, &
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HDF5_closeGroup, &
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HDF5_addGroup2, &
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HDF5_write
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use hdf5
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use DAMASK_interface, only: &
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getSolverJobName
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implicit none
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integer(pInt) :: i, k, l, m, ph, homog, mySource
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character(len=32) :: rankStr
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character(len=32) :: rankStr, PlasticItem, HomogItem
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integer(HID_T) :: fileHandle, groupPlastic, groupHomog
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integer :: hdferr
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integer(HSIZE_T) :: hdfsize
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if (iand(debug_level(debug_CPFEM), debug_levelBasic) /= 0_pInt) &
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write(6,'(a)') '<< CPFEM >> aging states'
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crystallite_F0 = crystallite_partionedF ! crystallite deformation (_subF is perturbed...)
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crystallite_Fp0 = crystallite_Fp ! crystallite plastic deformation
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crystallite_Lp0 = crystallite_Lp ! crystallite plastic velocity
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crystallite_Fi0 = crystallite_Fi ! crystallite intermediate deformation
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crystallite_Li0 = crystallite_Li ! crystallite intermediate velocity
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crystallite_dPdF0 = crystallite_dPdF ! crystallite stiffness
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crystallite_Tstar0_v = crystallite_Tstar_v ! crystallite 2nd Piola Kirchhoff stress
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forall (i = 1:size(plasticState)) plasticState(i)%state0 = plasticState(i)%state ! copy state in this lengthy way because: A component cannot be an array if the encompassing structure is an array
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do i = 1, size(sourceState)
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do mySource = 1,phase_Nsources(i)
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sourceState(i)%p(mySource)%state0 = sourceState(i)%p(mySource)%state ! copy state in this lengthy way because: A component cannot be an array if the encompassing structure is an array
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enddo; enddo
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do homog = 1_pInt, material_Nhomogenization
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homogState (homog)%state0 = homogState (homog)%state
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thermalState (homog)%state0 = thermalState (homog)%state
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damageState (homog)%state0 = damageState (homog)%state
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vacancyfluxState (homog)%state0 = vacancyfluxState (homog)%state
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hydrogenfluxState(homog)%state0 = hydrogenfluxState(homog)%state
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enddo
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crystallite_F0 = crystallite_partionedF ! crystallite deformation (_subF is perturbed...)
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crystallite_Fp0 = crystallite_Fp ! crystallite plastic deformation
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crystallite_Lp0 = crystallite_Lp ! crystallite plastic velocity
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crystallite_Fi0 = crystallite_Fi ! crystallite intermediate deformation
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crystallite_Li0 = crystallite_Li ! crystallite intermediate velocity
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crystallite_dPdF0 = crystallite_dPdF ! crystallite stiffness
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crystallite_Tstar0_v = crystallite_Tstar_v ! crystallite 2nd Piola Kirchhoff stress
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forall (i = 1:size(plasticState)) plasticState(i)%state0 = plasticState(i)%state ! copy state in this lengthy way because: A component cannot be an array if the encompassing structure is an array
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do i = 1, size(sourceState)
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do mySource = 1,phase_Nsources(i)
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sourceState(i)%p(mySource)%state0 = sourceState(i)%p(mySource)%state ! copy state in this lengthy way because: A component cannot be an array if the encompassing structure is an array
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enddo; enddo
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do homog = 1_pInt, material_Nhomogenization
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homogState (homog)%state0 = homogState (homog)%state
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thermalState (homog)%state0 = thermalState (homog)%state
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damageState (homog)%state0 = damageState (homog)%state
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vacancyfluxState (homog)%state0 = vacancyfluxState (homog)%state
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hydrogenfluxState(homog)%state0 = hydrogenfluxState(homog)%state
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enddo
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if (restartWrite) then
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if (iand(debug_level(debug_CPFEM), debug_levelBasic) /= 0_pInt) &
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write(6,'(a)') '<< CPFEM >> writing state variables of last converged step to binary files'
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write(6,'(a)') '<< CPFEM >> writing restart variables of last converged step to hdf5 file'
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write(rankStr,'(a1,i0)')'_',worldrank
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call IO_write_jobRealFile(777,'recordedPhase'//trim(rankStr),size(material_phase))
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write (777,rec=1) material_phase; close (777)
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call IO_write_jobRealFile(777,'convergedF'//trim(rankStr),size(crystallite_F0))
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write (777,rec=1) crystallite_F0; close (777)
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call IO_write_jobRealFile(777,'convergedFp'//trim(rankStr),size(crystallite_Fp0))
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write (777,rec=1) crystallite_Fp0; close (777)
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call IO_write_jobRealFile(777,'convergedFi'//trim(rankStr),size(crystallite_Fi0))
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write (777,rec=1) crystallite_Fi0; close (777)
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call IO_write_jobRealFile(777,'convergedLp'//trim(rankStr),size(crystallite_Lp0))
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write (777,rec=1) crystallite_Lp0; close (777)
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call IO_write_jobRealFile(777,'convergedLi'//trim(rankStr),size(crystallite_Li0))
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write (777,rec=1) crystallite_Li0; close (777)
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call IO_write_jobRealFile(777,'convergeddPdF'//trim(rankStr),size(crystallite_dPdF0))
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write (777,rec=1) crystallite_dPdF0; close (777)
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call IO_write_jobRealFile(777,'convergedTstar'//trim(rankStr),size(crystallite_Tstar0_v))
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write (777,rec=1) crystallite_Tstar0_v; close (777)
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call IO_write_jobRealFile(777,'convergedStateConst'//trim(rankStr))
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m = 0_pInt
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writePlasticityInstances: do ph = 1_pInt, size(phase_plasticity)
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do k = 1_pInt, plasticState(ph)%sizeState
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do l = 1, size(plasticState(ph)%state0(1,:))
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m = m+1_pInt
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write(777,rec=m) plasticState(ph)%state0(k,l)
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enddo; enddo
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enddo writePlasticityInstances
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close (777)
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call IO_write_jobRealFile(777,'convergedStateHomog'//trim(rankStr))
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m = 0_pInt
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writeHomogInstances: do homog = 1_pInt, material_Nhomogenization
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do k = 1_pInt, homogState(homog)%sizeState
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do l = 1, size(homogState(homog)%state0(1,:))
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m = m+1_pInt
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write(777,rec=m) homogState(homog)%state0(k,l)
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enddo; enddo
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enddo writeHomogInstances
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close (777)
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fileHandle = HDF5_openFile(trim(getSolverJobName())//trim(rankStr)//'.hdf5','w')
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call HDF5_write(material_phase, fileHandle,'recordedPhase')
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call HDF5_write(crystallite_F0, fileHandle,'convergedF')
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call HDF5_write(crystallite_Fp0, fileHandle,'convergedFp')
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call HDF5_write(crystallite_Fi0, fileHandle,'convergedFi')
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call HDF5_write(crystallite_Lp0, fileHandle,'convergedLp')
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call HDF5_write(crystallite_Li0, fileHandle,'convergedLi')
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call HDF5_write(crystallite_dPdF0, fileHandle,'convergeddPdF')
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call HDF5_write(crystallite_Tstar0_v,fileHandle,'convergedTstar')
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groupPlastic = HDF5_addGroup2(fileHandle,'PlasticPhases')
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do ph = 1_pInt,size(phase_plasticity)
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write(PlasticItem,*) ph,'_'
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call HDF5_write(plasticState(ph)%state0,groupPlastic,trim(PlasticItem)//'convergedStateConst')
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enddo
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call HDF5_closeGroup(groupPlastic)
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groupHomog = HDF5_addGroup2(fileHandle,'HomogStates')
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do homog = 1_pInt, material_Nhomogenization
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write(HomogItem,*) homog,'_'
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call HDF5_write(homogState(homog)%state0,groupHomog,trim(HomogItem)//'convergedStateHomog')
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enddo
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call HDF5_closeGroup(groupHomog)
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call HDF5_closeFile(fileHandle)
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restartWrite = .false.
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endif
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if (iand(debug_level(debug_CPFEM), debug_levelBasic) /= 0_pInt) &
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File diff suppressed because it is too large
Load Diff
10
src/quit.f90
10
src/quit.f90
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@ -14,18 +14,24 @@ subroutine quit(stop_id)
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use prec, only: &
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pInt
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use PetscSys
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use hdf5
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implicit none
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integer(pInt), intent(in) :: stop_id
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integer, dimension(8) :: dateAndTime ! type default integer
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integer :: hdferr
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integer(pInt) :: error = 0_pInt
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PetscErrorCode :: ierr = 0
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call h5close_f(hdferr)
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if (hdferr /= 0) write(6,'(a,i5)') ' Error in h5close_f',hdferr
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call PETScFinalize(ierr)
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CHKERRQ(ierr)
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#ifdef _OPENMP
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call MPI_finalize(error)
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if (error /= 0) write(6,'(a)') ' Error in MPI_finalize'
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if (error /= 0) write(6,'(a,i5)') ' Error in MPI_finalize',error
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#endif
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call date_and_time(values = dateAndTime)
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