Combined the dataset creation and writing dataset in single subroutine. Created group for looped writing.
This commit is contained in:
Vitesh Shah
parent
a789cae138
commit
6efde5f4ce
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@ -91,7 +91,7 @@ subroutine CPFEM_init
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compiler_options
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#endif
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use prec, only: &
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pInt
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pInt, pReal
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use IO, only: &
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IO_read_realFile,&
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IO_read_intFile, &
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@ -126,6 +126,7 @@ subroutine CPFEM_init
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implicit none
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integer(pInt) :: k,l,m,ph,homog
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character(len=1024) :: rankStr
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mainProcess: if (worldrank == 0) then
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write(6,'(/,a)') ' <<<+- CPFEM init -+>>>'
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@ -249,9 +250,6 @@ subroutine CPFEM_age()
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HDF5_closeGroup, &
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HDF5_addGroup2, &
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HDF5_writeScalarDataset3, &
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HDF5_writeScalarDataset4, &
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HDF5_writeScalarDataset5, &
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HDF5_writeScalarDataset7, &
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HDF5_addScalarDataset2
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use hdf5
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use DAMASK_interface, only: &
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@ -261,9 +259,12 @@ subroutine CPFEM_age()
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integer(pInt) :: i, k, l, m, ph, homog, mySource
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character(len=32) :: rankStr
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integer(HID_T) :: fileHandle
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integer(HID_T) :: fileHandle, groupHandle
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integer :: hdferr
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integer(HSIZE_T) :: hdfsize
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real(pReal), dimension(4,1,1,3,2) :: testData = reshape(real([1,2,3,4,5,6,7,8,9,10,11,12,13,14,15, &
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16,17,18,19,20,21,22,23,24],pReal),[4,1,1,3,2])
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if (iand(debug_level(debug_CPFEM), debug_levelBasic) /= 0_pInt) &
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write(6,'(a)') '<< CPFEM >> aging states'
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@ -297,22 +298,21 @@ if (restartWrite) then
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write(rankStr,'(a1,i0)')'_',worldrank
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fileHandle = HDF5_createFile(trim(getSolverJobName())//trim(rankStr)//'.hdf5_restart')
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fileHandle = HDF5_createFile(trim(getSolverJobName())//trim(rankStr)//'.hdf5')
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!call HDF5_closeGroup(HDF5_addGroup2(fileHandle,'recordedPhase'))
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!hdfsize = size(material_phase)
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!call h5dwrite_f(HDF5_addGroup2(fileHandle,'recordedPhase'), H5T_NATIVE_INTEGER, material_phase, hdfsize, hdferr)
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call HDF5_addScalarDataset2(fileHandle,shape(material_phase),'recordedPhase')
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!call HDF5_writeScalarDataset3(fileHandle,testdata,'test',shape(testdata))
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call HDF5_writeScalarDataset3(fileHandle,real(material_phase,pReal),'recordedPhase',shape(material_phase))
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call HDF5_writeScalarDataset3(fileHandle,crystallite_F0,'convergedF',shape(crystallite_F0))
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call HDF5_writeScalarDataset3(fileHandle,crystallite_Fp0,'convergedFp',shape(crystallite_Fp0))
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call HDF5_writeScalarDataset3(fileHandle,crystallite_Fi0,'convergedFi',shape(crystallite_Fi0))
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call HDF5_writeScalarDataset3(fileHandle,crystallite_Lp0,'convergedLp',shape(crystallite_Lp0))
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call HDF5_writeScalarDataset3(fileHandle,crystallite_Li0,'convergedLi',shape(crystallite_Li0))
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call HDF5_writeScalarDataset3(fileHandle,crystallite_dPdF0,'convergeddPdF',shape(crystallite_dPdF0))
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call HDF5_writeScalarDataset3(fileHandle,crystallite_Tstar0_v,'convergedTstar',shape(crystallite_Tstar0_v))
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call HDF5_addScalarDataset2(fileHandle,shape(crystallite_F0),'convergedF')
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call HDF5_writeScalarDataset5(fileHandle,real(crystallite_F0,pReal),'convergedF',shape(crystallite_F0))
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groupHandle = HDF5_addGroup2(fileHandle,'PlasticPhases')
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!call HDF5_writeScalarDatasetLoop(fileHandle,plasticState(ph)%state0,'convergedStateConst',shape())
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call HDF5_addScalarDataset2(fileHandle,shape(crystallite_Fp0),'convergedFp')
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call HDF5_writeScalarDataset5(fileHandle,real(crystallite_Fp0,pReal),'convergedFp',shape(crystallite_Fp0))
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!call HDF5_closeGroup(HDF5_addGroup2(fileHandle,'recordedPhase'))
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call HDF5_closeFile(fileHandle)
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call IO_write_jobRealFile(777,'recordedPhase'//trim(rankStr),size(material_phase))
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@ -30,9 +30,7 @@ module HDF5_Utilities
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HDF5_removeLink, &
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HDF5_createFile, &
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HDF5_closeFile, &
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HDF5_addGroup2, HDF5_addScalarDataset2, HDF5_writeScalarDataset3, HDF5_writeScalarDataset4, HDF5_writeScalarDataset5, &
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HDF5_writeScalarDataset7
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HDF5_addGroup2, HDF5_addScalarDataset2, HDF5_writeScalarDataset3
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contains
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subroutine HDF5_Utilities_init
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@ -185,16 +183,16 @@ end function HDF5_addGroup
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!--------------------------------------------------------------------------------------------------
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!> @brief adds a new group to the results file, or if loc is present at the given location
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!--------------------------------------------------------------------------------------------------
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integer(HID_T) function HDF5_addGroup2(fileHandle,path)
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integer(HID_T) function HDF5_addGroup2(fileHandle,groupName)
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use hdf5
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implicit none
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character(len=*), intent(in) :: path
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character(len=*), intent(in) :: groupName
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integer(HID_T), intent(in) :: fileHandle
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integer :: hdferr
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call h5gcreate_f(fileHandle, trim(path), HDF5_addGroup2, hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg = 'HDF5_addGroup2: h5gcreate_f ('//trim(path)//')')
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call h5gcreate_f(fileHandle, trim(groupName), HDF5_addGroup2, hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg = 'HDF5_addGroup2: h5gcreate_f ('//trim(groupName)//')')
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end function HDF5_addGroup2
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@ -1345,210 +1343,80 @@ end subroutine HDF5_writeScalarDataset
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!--------------------------------------------------------------------------------------------------
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!> @brief creates a new scalar dataset in the given group location
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!--------------------------------------------------------------------------------------------------
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subroutine HDF5_writeScalarDataset3(group,dataset,label,dataspace_size)
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subroutine HDF5_writeScalarDataset3(group,dataset,label,myShape)
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use hdf5
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implicit none
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integer(HID_T), intent(in) :: group
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integer(pInt), intent(in), dimension(:) :: myShape
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character(len=*), intent(in) :: label
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integer(pInt), intent(in),dimension(:) :: dataspace_size
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real(pReal), intent(in), dimension(:,:,:) :: dataset
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real(pReal), intent(in), dimension(*) :: dataset
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integer :: hdferr
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integer(HID_T) :: dset_id, space_id, memspace, plist_id
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integer(HSIZE_T), dimension(1) :: counter
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integer(HSSIZE_T), dimension(1) :: fileOffset
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call h5dopen_f(group, label, dset_id, hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_writeScalarDataset: h5dopen_f')
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integer(HID_T) :: dset_id, space_id
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! Define and select hyperslabs
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counter = size(dataset) ! how big i am
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fileOffset = 0 ! where i start to write my data
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call h5screate_simple_f(1, counter, memspace, hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_writeScalarDataset: h5screate_simple_f')
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call h5dget_space_f(dset_id, space_id, hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_writeScalarDataset: h5dget_space_f')
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!call h5sselect_hyperslab_f(space_id, H5S_SELECT_SET_F, fileOffset, counter, hdferr)
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!if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_writeScalarDataset: h5sselect_hyperslab_f')
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!--------------------------------------------------------------------------------------------------
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! create dataspace
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call h5screate_simple_f(size(myShape), int(myShape,HSIZE_T), space_id, hdferr, &
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int(myShape,HSIZE_T))
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_writeScalarDataset3: h5screate_simple_f')
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!--------------------------------------------------------------------------------------------------
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! create Dataset
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call h5dcreate_f(group, trim(label), H5T_NATIVE_DOUBLE, space_id, dset_id, hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_writeScalarDataset3: h5dcreate_f')
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CALL h5dwrite_f(dset_id, H5T_NATIVE_DOUBLE,dataset,int(myShape,HSIZE_T), hdferr)
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! Create property list for collective dataset write
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#ifdef PETSc
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call h5pcreate_f(H5P_DATASET_XFER_F, plist_id, hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_writeScalarDataset: h5pcreate_f')
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call h5pset_dxpl_mpio_f(plist_id, H5FD_MPIO_COLLECTIVE_F, hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_writeScalarDataset: h5pset_dxpl_mpio_f')
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#endif
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! Write the dataset collectively
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call h5dwrite_f(dset_id, H5T_NATIVE_DOUBLE, dataset, int(dataspace_size,HSIZE_T), hdferr, &
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file_space_id = space_id, mem_space_id = memspace)!, xfer_prp = plist_id)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_writeScalarDataset: h5dwrite_f')
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call h5sclose_f(space_id, hdferr)
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call h5sclose_f(memspace, hdferr)
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!--------------------------------------------------------------------------------------------------
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!close types, dataspaces
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call h5dclose_f(dset_id, hdferr)
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call h5pclose_f(plist_id, hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_writeScalarDataset3: h5dclose_f')
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call h5sclose_f(space_id, hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_writeScalarDataset3: h5sclose_f')
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end subroutine HDF5_writeScalarDataset3
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!--------------------------------------------------------------------------------------------------
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!> @brief creates a new scalar dataset in the given group location
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!--------------------------------------------------------------------------------------------------
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subroutine HDF5_writeScalarDataset4(group,dataset,label,dataspace_size)
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use hdf5
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! subroutine HDF5_writeScalarDatasetLoop(group,dataset,label,myShape)
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! use hdf5
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implicit none
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integer(HID_T), intent(in) :: group
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character(len=*), intent(in) :: label
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integer(pInt), intent(in),dimension(:) :: dataspace_size
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real(pReal), intent(in), dimension(:,:,:,:) :: dataset
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! implicit none
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! integer(HID_T), intent(in) :: group
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! integer(pInt), intent(in), dimension(:) :: myShape
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! character(len=*), intent(in) :: label
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! real(pReal), intent(in), dimension(*) :: dataset
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integer :: hdferr
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integer(HID_T) :: dset_id, space_id, memspace, plist_id
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integer(HSIZE_T), dimension(1) :: counter
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integer(HSSIZE_T), dimension(1) :: fileOffset
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call h5dopen_f(group, label, dset_id, hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_writeScalarDataset: h5dopen_f')
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! integer :: hdferr
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! integer(HID_T) :: dset_id, space_id
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! Define and select hyperslabs
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counter = size(dataset) ! how big i am
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fileOffset = 0 ! where i start to write my data
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call h5screate_simple_f(1, counter, memspace, hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_writeScalarDataset: h5screate_simple_f')
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call h5dget_space_f(dset_id, space_id, hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_writeScalarDataset: h5dget_space_f')
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!call h5sselect_hyperslab_f(space_id, H5S_SELECT_SET_F, fileOffset, counter, hdferr)
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!if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_writeScalarDataset: h5sselect_hyperslab_f')
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! Create property list for collective dataset write
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#ifdef PETSc
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call h5pcreate_f(H5P_DATASET_XFER_F, plist_id, hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_writeScalarDataset: h5pcreate_f')
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call h5pset_dxpl_mpio_f(plist_id, H5FD_MPIO_COLLECTIVE_F, hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_writeScalarDataset: h5pset_dxpl_mpio_f')
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#endif
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! Write the dataset collectively
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call h5dwrite_f(dset_id, H5T_NATIVE_DOUBLE, dataset, int(dataspace_size,HSIZE_T), hdferr, &
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file_space_id = space_id, mem_space_id = memspace)!, xfer_prp = plist_id)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_writeScalarDataset: h5dwrite_f')
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call h5sclose_f(space_id, hdferr)
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call h5sclose_f(memspace, hdferr)
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call h5dclose_f(dset_id, hdferr)
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call h5pclose_f(plist_id, hdferr)
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end subroutine HDF5_writeScalarDataset4
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! !--------------------------------------------------------------------------------------------------
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! ! create dataspace
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! call h5screate_simple_f(size(myShape), int(myShape,HSIZE_T), space_id, hdferr, &
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! int(myShape,HSIZE_T))
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! if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_writeScalarDataset3: h5screate_simple_f')
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!--------------------------------------------------------------------------------------------------
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!> @brief creates a new scalar dataset in the given group location
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!--------------------------------------------------------------------------------------------------
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subroutine HDF5_writeScalarDataset5(group,dataset,label,dataspace_size)
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use hdf5
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! !--------------------------------------------------------------------------------------------------
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! ! create Dataset
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! call h5dcreate_f(group, trim(label), H5T_NATIVE_DOUBLE, space_id, dset_id, hdferr)
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! if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_writeScalarDataset3: h5dcreate_f')
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implicit none
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integer(HID_T), intent(in) :: group
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character(len=*), intent(in) :: label
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integer(pInt), intent(in),dimension(:) :: dataspace_size
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real(pReal), intent(in), dimension(:,:,:,:,:) :: dataset
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! CALL h5dwrite_f(dset_id, H5T_NATIVE_DOUBLE,dataset,int(myShape,HSIZE_T), hdferr)
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integer :: hdferr
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integer(HID_T) :: dset_id, space_id, memspace, plist_id
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integer(HSIZE_T), dimension(1) :: counter
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integer(HSSIZE_T), dimension(1) :: fileOffset
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! !--------------------------------------------------------------------------------------------------
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! !close types, dataspaces
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! call h5dclose_f(dset_id, hdferr)
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! if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_writeScalarDataset3: h5dclose_f')
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! call h5sclose_f(space_id, hdferr)
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! if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_writeScalarDataset3: h5sclose_f')
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call h5dopen_f(group, label, dset_id, hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_writeScalarDataset: h5dopen_f')
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! Define and select hyperslabs
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counter = size(dataset) ! how big i am
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fileOffset = 0 ! where i start to write my data
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call h5screate_simple_f(1, counter, memspace, hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_writeScalarDataset: h5screate_simple_f')
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call h5dget_space_f(dset_id, space_id, hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_writeScalarDataset: h5dget_space_f')
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!call h5sselect_hyperslab_f(space_id, H5S_SELECT_SET_F, fileOffset, counter, hdferr)
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!if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_writeScalarDataset: h5sselect_hyperslab_f')
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! Create property list for collective dataset write
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#ifdef PETSc
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call h5pcreate_f(H5P_DATASET_XFER_F, plist_id, hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_writeScalarDataset: h5pcreate_f')
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call h5pset_dxpl_mpio_f(plist_id, H5FD_MPIO_COLLECTIVE_F, hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_writeScalarDataset: h5pset_dxpl_mpio_f')
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#endif
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! Write the dataset collectively
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call h5dwrite_f(dset_id, H5T_NATIVE_DOUBLE, dataset, int(dataspace_size,HSIZE_T), hdferr, &
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file_space_id = space_id, mem_space_id = memspace)!, xfer_prp = plist_id)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_writeScalarDataset: h5dwrite_f')
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call h5sclose_f(space_id, hdferr)
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call h5sclose_f(memspace, hdferr)
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call h5dclose_f(dset_id, hdferr)
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call h5pclose_f(plist_id, hdferr)
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end subroutine HDF5_writeScalarDataset5
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!--------------------------------------------------------------------------------------------------
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!> @brief creates a new scalar dataset in the given group location
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!--------------------------------------------------------------------------------------------------
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subroutine HDF5_writeScalarDataset7(group,dataset,label,dataspace_size)
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use hdf5
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implicit none
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integer(HID_T), intent(in) :: group
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character(len=*), intent(in) :: label
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integer(pInt), intent(in),dimension(:) :: dataspace_size
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real(pReal), intent(in), dimension(:,:,:,:,:,:,:) :: dataset
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integer :: hdferr
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integer(HID_T) :: dset_id, space_id, memspace, plist_id
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integer(HSIZE_T), dimension(1) :: counter
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integer(HSSIZE_T), dimension(1) :: fileOffset
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call h5dopen_f(group, label, dset_id, hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_writeScalarDataset: h5dopen_f')
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! Define and select hyperslabs
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counter = size(dataset) ! how big i am
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fileOffset = 0 ! where i start to write my data
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call h5screate_simple_f(1, counter, memspace, hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_writeScalarDataset: h5screate_simple_f')
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call h5dget_space_f(dset_id, space_id, hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_writeScalarDataset: h5dget_space_f')
|
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!call h5sselect_hyperslab_f(space_id, H5S_SELECT_SET_F, fileOffset, counter, hdferr)
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!if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_writeScalarDataset: h5sselect_hyperslab_f')
|
||||
|
||||
! Create property list for collective dataset write
|
||||
#ifdef PETSc
|
||||
call h5pcreate_f(H5P_DATASET_XFER_F, plist_id, hdferr)
|
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_writeScalarDataset: h5pcreate_f')
|
||||
call h5pset_dxpl_mpio_f(plist_id, H5FD_MPIO_COLLECTIVE_F, hdferr)
|
||||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_writeScalarDataset: h5pset_dxpl_mpio_f')
|
||||
#endif
|
||||
|
||||
! Write the dataset collectively
|
||||
call h5dwrite_f(dset_id, H5T_NATIVE_DOUBLE, dataset, int(dataspace_size,HSIZE_T), hdferr, &
|
||||
file_space_id = space_id, mem_space_id = memspace)!, xfer_prp = plist_id)
|
||||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_writeScalarDataset: h5dwrite_f')
|
||||
|
||||
call h5sclose_f(space_id, hdferr)
|
||||
call h5sclose_f(memspace, hdferr)
|
||||
call h5dclose_f(dset_id, hdferr)
|
||||
call h5pclose_f(plist_id, hdferr)
|
||||
|
||||
end subroutine HDF5_writeScalarDataset7
|
||||
! end subroutine HDF5_writeScalarDatasetLoop
|
||||
|
||||
!--------------------------------------------------------------------------------------------------
|
||||
!> @brief creates a new scalar dataset in the given group location
|
||||
|
|
|
|||
Loading…
Reference in New Issue