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hdferr needs to be integer type during compile time of HDF5 library

This commit is contained in:
Martin Diehl 2018-11-20 15:26:49 +01:00
parent c0481307ee
commit 50a1ba6287
1 changed files with 60 additions and 54 deletions
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114
src/HDF5_utilities.f90
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@ -14,6 +14,8 @@ module HDF5_utilities
implicit none
private
integer(pInt), parameter, private :: &
HDF5_ERR_TYPE = 4_pInt !< kind of the integer return in the HDF5 library
!--------------------------------------------------------------------------------------------------
!> @brief reads pInt or pReal data of defined shape from file
@ -77,8 +79,8 @@ subroutine HDF5_utilities_init
iso_fortran_env ! to get compiler_version and compiler_options (at least for gfortran 4.6 at the moment)
implicit none
integer :: hdferr
integer(SIZE_T) :: typeSize
integer(HDF5_ERR_TYPE) :: hdferr
integer(SIZE_T) :: typeSize
write(6,'(/,a)') ' <<<+- HDF5_Utilities init -+>>>'
#include "compilation_info.f90"
@ -109,7 +111,7 @@ integer(HID_T) function HDF5_openFile(fileName,mode,parallel)
character :: m
integer(HID_T) :: plist_id
integer :: hdferr
integer(HDF5_ERR_TYPE) :: hdferr
if (present(mode)) then
m = mode
@ -129,13 +131,13 @@ integer(HID_T) function HDF5_openFile(fileName,mode,parallel)
if (m == 'w') then
call h5fcreate_f(fileName,H5F_ACC_TRUNC_F,HDF5_openFile,hdferr,access_prp = plist_id)
if (hdferr /= 0) call IO_error(1_pInt,ext_msg='HDF5_openFile: h5fcreate_f',el=hdferr)
if (hdferr /= 0) call IO_error(1_pInt,ext_msg='HDF5_openFile: h5fcreate_f')
elseif(m == 'a') then
call h5fopen_f(fileName,H5F_ACC_RDWR_F,HDF5_openFile,hdferr,access_prp = plist_id)
if (hdferr /= 0) call IO_error(1_pInt,ext_msg='HDF5_openFile: h5fopen_f (a)',el=hdferr)
if (hdferr /= 0) call IO_error(1_pInt,ext_msg='HDF5_openFile: h5fopen_f (a)')
elseif(m == 'r') then
call h5fopen_f(fileName,H5F_ACC_RDONLY_F,HDF5_openFile,hdferr,access_prp = plist_id)
if (hdferr /= 0) call IO_error(1_pInt,ext_msg='HDF5_openFile: h5fopen_f (r)',el=hdferr)
if (hdferr /= 0) call IO_error(1_pInt,ext_msg='HDF5_openFile: h5fopen_f (r)')
else
call IO_error(1_pInt,ext_msg='HDF5_openFile: h5fopen_f unknown access mode')
endif
@ -152,10 +154,11 @@ end function HDF5_openFile
subroutine HDF5_closeFile(fileHandle)
implicit none
integer :: hdferr
integer(HDF5_ERR_TYPE) :: hdferr
integer(HID_T), intent(in) :: fileHandle
call h5fclose_f(fileHandle,hdferr)
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_closeFile: h5fclose_f',el=hdferr)
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_closeFile: h5fclose_f')
end subroutine HDF5_closeFile
@ -164,12 +167,11 @@ end subroutine HDF5_closeFile
!> @brief adds a new group to the fileHandle (additional to addGroup2)
!--------------------------------------------------------------------------------------------------
integer(HID_T) function HDF5_addGroup2(fileHandle,groupName)
use hdf5
implicit none
character(len=*), intent(in) :: groupName
integer(HID_T), intent(in) :: fileHandle
integer :: hdferr
integer(HDF5_ERR_TYPE) :: hdferr
call h5gcreate_f(fileHandle, trim(groupName), HDF5_addGroup2, hdferr)
if (hdferr < 0) call IO_error(1_pInt,ext_msg = 'HDF5_addGroup2: h5gcreate_f ('//trim(groupName)//')')
@ -181,11 +183,10 @@ end function HDF5_addGroup2
!> @brief open an existing group of a file
!--------------------------------------------------------------------------------------------------
integer(HID_T) function HDF5_openGroup2(FileReadID,groupName)
use hdf5
implicit none
character(len=*), intent(in) :: groupName
integer :: hdferr
integer(HDF5_ERR_TYPE) :: hdferr
integer(HID_T), intent(in) :: FileReadID
call h5gopen_f(FileReadID, trim(groupName), HDF5_openGroup2, hdferr)
@ -198,11 +199,10 @@ end function HDF5_openGroup2
!> @brief close a group
!--------------------------------------------------------------------------------------------------
subroutine HDF5_closeGroup(ID)
use hdf5
implicit none
integer(HID_T), intent(in) :: ID
integer :: hdferr
integer(HDF5_ERR_TYPE) :: hdferr
call h5gclose_f(ID, hdferr)
if (hdferr < 0) call IO_error(1_pInt,ext_msg = 'HDF5_closeGroup: h5gclose_f (el is ID)', el = int(ID,pInt))
@ -214,12 +214,11 @@ end subroutine HDF5_closeGroup
!> @brief adds a StringAttribute to the results file
!--------------------------------------------------------------------------------------------------
subroutine HDF5_addStringAttribute(entity,attrLabel,attrValue)
use hdf5
implicit none
integer(HID_T), intent(in) :: entity
character(len=*), intent(in) :: attrLabel, attrValue
integer :: hdferr
integer(HDF5_ERR_TYPE) :: hdferr
integer(HID_T) :: attr_id, space_id, type_id
call h5screate_f(H5S_SCALAR_F,space_id,hdferr)
@ -246,13 +245,12 @@ end subroutine HDF5_addStringAttribute
!> @brief adds a StringAttribute to the results file
!--------------------------------------------------------------------------------------------------
subroutine HDF5_addIntegerAttribute(entity,attrLabel,attrValue)
use hdf5
implicit none
integer(HID_T), intent(in) :: entity
character(len=*), intent(in) :: attrLabel
integer(pInt), intent(in) :: attrValue
integer :: hdferr
integer(HDF5_ERR_TYPE) :: hdferr
integer(HID_T) :: attr_id, space_id, type_id
call h5screate_f(H5S_SCALAR_F,space_id,hdferr)
@ -285,7 +283,7 @@ subroutine HDF5_read_pReal_1(dataset,loc_id,datasetName)
integer(HID_T), intent(in) :: loc_id !< file or group handle
character(len=*), intent(in) :: datasetName !< name of the dataset in the file
integer(pInt),dimension(:), allocatable :: myShape
integer :: hdferr
integer(HDF5_ERR_TYPE) :: hdferr
integer(HID_T) :: dset_id
myShape = shape(dataset)
@ -309,8 +307,8 @@ subroutine HDF5_read_pReal_2(dataset,loc_id,datasetName)
character(len=*), intent(in) :: datasetName !< name of the dataset in the file
integer(pInt),dimension(:), allocatable :: myShape
integer :: hdferr
integer(HID_T) :: dset_id
integer(HDF5_ERR_TYPE) :: hdferr
integer(HID_T) :: dset_id
myShape = shape(dataset)
call h5dopen_f(loc_id,datasetName,dset_id,hdferr)
@ -332,7 +330,7 @@ subroutine HDF5_read_pReal_3(dataset,loc_id,datasetName)
integer(HID_T), intent(in) :: loc_id !< file or group handle
character(len=*), intent(in) :: datasetName !< name of the dataset in the file
integer(pInt),dimension(:), allocatable :: myShape
integer :: hdferr
integer(HDF5_ERR_TYPE) :: hdferr
integer(HID_T) :: dset_id
myShape = shape(dataset)
@ -356,7 +354,7 @@ subroutine HDF5_read_pReal_4(dataset,loc_id,datasetName)
character(len=*), intent(in) :: datasetName !< name of the dataset in the file
integer(pInt),dimension(:), allocatable :: myShape
integer :: hdferr
integer(HDF5_ERR_TYPE) :: hdferr
integer(HID_T) :: dset_id
myShape = shape(dataset)
@ -380,7 +378,7 @@ subroutine HDF5_read_pReal_5(dataset,loc_id,datasetName)
character(len=*), intent(in) :: datasetName !< name of the dataset in the file
integer(pInt),dimension(:), allocatable :: myShape
integer :: hdferr
integer(HDF5_ERR_TYPE) :: hdferr
integer(HID_T) :: dset_id
myShape = shape(dataset)
@ -404,7 +402,7 @@ subroutine HDF5_read_pReal_6(dataset,loc_id,datasetName)
character(len=*), intent(in) :: datasetName !< name of the dataset in the file
integer(pInt),dimension(:), allocatable :: myShape
integer :: hdferr
integer(HDF5_ERR_TYPE) :: hdferr
integer(HID_T) :: dset_id
myShape = shape(dataset)
@ -428,7 +426,7 @@ subroutine HDF5_read_pReal_7(dataset,loc_id,datasetName)
character(len=*), intent(in) :: datasetName !< name of the dataset in the file
integer(pInt),dimension(:), allocatable :: myShape
integer :: hdferr
integer(HDF5_ERR_TYPE) :: hdferr
integer(HID_T) :: dset_id
myShape = shape(dataset)
@ -452,7 +450,7 @@ subroutine HDF5_read_pInt_1(dataset,loc_id,datasetName)
character(len=*), intent(in) :: datasetName !< name of the dataset in the file
integer(pInt),dimension(:), allocatable :: myShape
integer :: hdferr
integer(HDF5_ERR_TYPE) :: hdferr
integer(HID_T) :: dset_id
myShape = shape(dataset)
@ -476,7 +474,7 @@ subroutine HDF5_read_pInt_2(dataset,loc_id,datasetName)
character(len=*), intent(in) :: datasetName !< name of the dataset in the file
integer(pInt),dimension(:), allocatable :: myShape
integer :: hdferr
integer(HDF5_ERR_TYPE) :: hdferr
integer(HID_T) :: dset_id
myShape = shape(dataset)
@ -500,7 +498,7 @@ subroutine HDF5_read_pInt_3(dataset,loc_id,datasetName)
character(len=*), intent(in) :: datasetName !< name of the dataset in the file
integer(pInt),dimension(:), allocatable :: myShape
integer :: hdferr
integer(HDF5_ERR_TYPE) :: hdferr
integer(HID_T) :: dset_id
myShape = shape(dataset)
@ -524,7 +522,7 @@ subroutine HDF5_read_pInt_4(dataset,loc_id,datasetName)
character(len=*), intent(in) :: datasetName !< name of the dataset in the file
integer(pInt),dimension(:), allocatable :: myShape
integer :: hdferr
integer(HDF5_ERR_TYPE) :: hdferr
integer(HID_T) :: dset_id
myShape = shape(dataset)
@ -548,7 +546,7 @@ subroutine HDF5_read_pInt_5(dataset,loc_id,datasetName)
character(len=*), intent(in) :: datasetName !< name of the dataset in the file
integer(pInt),dimension(:), allocatable :: myShape
integer :: hdferr
integer(HDF5_ERR_TYPE) :: hdferr
integer(HID_T) :: dset_id
myShape = shape(dataset)
@ -572,7 +570,7 @@ subroutine HDF5_read_pInt_6(dataset,loc_id,datasetName)
character(len=*), intent(in) :: datasetName !< name of the dataset in the file
integer(pInt),dimension(:), allocatable :: myShape
integer :: hdferr
integer(HDF5_ERR_TYPE) :: hdferr
integer(HID_T) :: dset_id
myShape = shape(dataset)
@ -596,7 +594,7 @@ subroutine HDF5_read_pInt_7(dataset,loc_id,datasetName)
character(len=*), intent(in) :: datasetName !< name of the dataset in the file
integer(pInt),dimension(:), allocatable :: myShape
integer :: hdferr
integer(HDF5_ERR_TYPE) :: hdferr
integer(HID_T) :: dset_id
myShape = shape(dataset)
@ -629,11 +627,12 @@ subroutine HDF5_write_pReal1(dataset,loc_id,datasetName,parallel)
globalShape, & !< shape of the dataset (all processes)
localShape, & !< shape of the dataset (this process)
outputSize !< contribution of all processes
integer :: hdferr,ierr
integer(HDF5_ERR_TYPE) :: hdferr
integer :: ierr
integer(HID_T) :: dset_id, filespace_id, memspace_id, plist_id
integer(HSIZE_T), dimension(1) :: myStart
call h5pcreate_f(H5P_DATASET_XFER_F, plist_id, ierr)
call h5pcreate_f(H5P_DATASET_XFER_F, plist_id, hdferr)
!--------------------------------------------------------------------------------------------------
! determine shape of dataset
@ -715,11 +714,12 @@ subroutine HDF5_write_pReal2(dataset,loc_id,datasetName,parallel)
globalShape, & !< shape of the dataset (all processes)
localShape, & !< shape of the dataset (this process)
outputSize !< contribution of all processes
integer :: hdferr,ierr
integer(HDF5_ERR_TYPE) :: hdferr
integer :: ierr
integer(HID_T) :: dset_id, filespace_id, memspace_id, plist_id
integer(HSIZE_T), dimension(2) :: myStart
call h5pcreate_f(H5P_DATASET_XFER_F, plist_id, ierr)
call h5pcreate_f(H5P_DATASET_XFER_F, plist_id, hdferr)
!--------------------------------------------------------------------------------------------------
! determine shape of dataset
@ -801,11 +801,12 @@ subroutine HDF5_write_pReal3(dataset,loc_id,datasetName,parallel)
globalShape, & !< shape of the dataset (all processes)
localShape, & !< shape of the dataset (this process)
outputSize !< contribution of all processes
integer :: hdferr,ierr
integer(HDF5_ERR_TYPE) :: hdferr
integer :: ierr
integer(HID_T) :: dset_id, filespace_id, memspace_id, plist_id
integer(HSIZE_T), dimension(3) :: myStart
call h5pcreate_f(H5P_DATASET_XFER_F, plist_id, ierr)
call h5pcreate_f(H5P_DATASET_XFER_F, plist_id, hdferr)
!--------------------------------------------------------------------------------------------------
! determine shape of dataset
@ -887,11 +888,12 @@ subroutine HDF5_write_pReal4(dataset,loc_id,datasetName,parallel)
globalShape, & !< shape of the dataset (all processes)
localShape, & !< shape of the dataset (this process)
outputSize !< contribution of all processes
integer :: hdferr,ierr
integer(HDF5_ERR_TYPE) :: hdferr
integer :: ierr
integer(HID_T) :: dset_id, filespace_id, memspace_id, plist_id
integer(HSIZE_T), dimension(4) :: myStart
call h5pcreate_f(H5P_DATASET_XFER_F, plist_id, ierr)
call h5pcreate_f(H5P_DATASET_XFER_F, plist_id, hdferr)
!--------------------------------------------------------------------------------------------------
! determine shape of dataset
@ -973,11 +975,12 @@ subroutine HDF5_write_pReal5(dataset,loc_id,datasetName,parallel)
globalShape, & !< shape of the dataset (all processes)
localShape, & !< shape of the dataset (this process)
outputSize !< contribution of all processes
integer :: hdferr,ierr
integer(HDF5_ERR_TYPE) :: hdferr
integer :: ierr
integer(HID_T) :: dset_id, filespace_id, memspace_id, plist_id
integer(HSIZE_T), dimension(5) :: myStart
call h5pcreate_f(H5P_DATASET_XFER_F, plist_id, ierr)
call h5pcreate_f(H5P_DATASET_XFER_F, plist_id, hdferr)
!--------------------------------------------------------------------------------------------------
! determine shape of dataset
@ -1059,11 +1062,12 @@ subroutine HDF5_write_pReal6(dataset,loc_id,datasetName,parallel)
globalShape, & !< shape of the dataset (all processes)
localShape, & !< shape of the dataset (this process)
outputSize !< contribution of all processes
integer :: hdferr,ierr
integer(HDF5_ERR_TYPE) :: hdferr
integer :: ierr
integer(HID_T) :: dset_id, filespace_id, memspace_id, plist_id
integer(HSIZE_T), dimension(6) :: myStart
call h5pcreate_f(H5P_DATASET_XFER_F, plist_id, ierr)
call h5pcreate_f(H5P_DATASET_XFER_F, plist_id, hdferr)
!--------------------------------------------------------------------------------------------------
! determine shape of dataset
@ -1145,11 +1149,12 @@ subroutine HDF5_write_pReal7(dataset,loc_id,datasetName,parallel)
globalShape, & !< shape of the dataset (all processes)
localShape, & !< shape of the dataset (this process)
outputSize !< contribution of all processes
integer :: hdferr,ierr
integer(HDF5_ERR_TYPE) :: hdferr
integer :: ierr
integer(HID_T) :: dset_id, filespace_id, memspace_id, plist_id
integer(HSIZE_T), dimension(7) :: myStart
call h5pcreate_f(H5P_DATASET_XFER_F, plist_id, ierr)
call h5pcreate_f(H5P_DATASET_XFER_F, plist_id, hdferr)
!--------------------------------------------------------------------------------------------------
! determine shape of dataset
@ -1223,7 +1228,8 @@ subroutine HDF5_write_pInt1(dataset,loc_id,datasetName)
character(len=*), intent(in) :: datasetName !< name of the dataset in the file
integer(pInt), dimension(:), allocatable :: myShape !<shape of the dataset
integer :: hdferr
integer(HDF5_ERR_TYPE) :: hdferr
integer :: ierr
integer(HID_T) :: dset_id, space_id
myShape = shape(dataset)
@ -1259,7 +1265,7 @@ subroutine HDF5_write_pInt2(dataset,loc_id,datasetName)
character(len=*), intent(in) :: datasetName !< name of the dataset in the file
integer(pInt), dimension(:), allocatable :: myShape !<shape of the dataset
integer :: hdferr
integer(HDF5_ERR_TYPE) :: hdferr
integer(HID_T) :: dset_id, space_id
myShape = shape(dataset)
@ -1295,7 +1301,7 @@ subroutine HDF5_write_pInt3(dataset,loc_id,datasetName)
character(len=*), intent(in) :: datasetName !< name of the dataset in the file
integer(pInt), dimension(:), allocatable :: myShape !<shape of the dataset
integer :: hdferr
integer(HDF5_ERR_TYPE) :: hdferr
integer(HID_T) :: dset_id, space_id
myShape = shape(dataset)
@ -1331,7 +1337,7 @@ subroutine HDF5_write_pInt4(dataset,loc_id,datasetName)
character(len=*), intent(in) :: datasetName !< name of the dataset in the file
integer(pInt), dimension(:), allocatable :: myShape !<shape of the dataset
integer :: hdferr
integer(HDF5_ERR_TYPE) :: hdferr
integer(HID_T) :: dset_id, space_id
myShape = shape(dataset)
@ -1367,7 +1373,7 @@ subroutine HDF5_write_pInt5(dataset,loc_id,datasetName)
character(len=*), intent(in) :: datasetName !< name of the dataset in the file
integer(pInt), dimension(:), allocatable :: myShape !<shape of the dataset
integer :: hdferr
integer(HDF5_ERR_TYPE) :: hdferr
integer(HID_T) :: dset_id, space_id
myShape = shape(dataset)
@ -1403,7 +1409,7 @@ subroutine HDF5_write_pInt6(dataset,loc_id,datasetName)
character(len=*), intent(in) :: datasetName !< name of the dataset in the file
integer(pInt), dimension(:), allocatable :: myShape !<shape of the dataset
integer :: hdferr
integer(HDF5_ERR_TYPE) :: hdferr
integer(HID_T) :: dset_id, space_id
myShape = shape(dataset)
@ -1439,7 +1445,7 @@ subroutine HDF5_write_pInt7(dataset,loc_id,datasetName)
character(len=*), intent(in) :: datasetName !< name of the dataset in the file
integer(pInt), dimension(:), allocatable :: myShape !<shape of the dataset
integer :: hdferr
integer(HDF5_ERR_TYPE) :: hdferr
integer(HID_T) :: dset_id, space_id
myShape = shape(dataset)