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Functionality to avoid creating datasets in HDF5 of zero dimensions

This commit is contained in:
Vitesh Shah 2018-11-26 15:38:31 +01:00
parent e7581f06d9
commit ef1e9cce0d
1 changed files with 151 additions and 69 deletions
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220
src/HDF5_utilities.f90 Normal file → Executable file
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@ -374,7 +374,10 @@ end subroutine HDF5_read_pReal_4
!--------------------------------------------------------------------------------------------------
!> @brief subroutine for reading dataset of the type pReal with 5 dimensions
!--------------------------------------------------------------------------------------------------
subroutine HDF5_read_pReal_5(dataset,loc_id,datasetName)
subroutine HDF5_read_pReal_5(dataset,loc_id,datasetName,parallel)
use numerics, only: &
worldrank, &
worldsize
implicit none
real(pReal), intent(out), dimension(:,:,:,:,:) :: dataset
@ -383,8 +386,16 @@ subroutine HDF5_read_pReal_5(dataset,loc_id,datasetName)
integer(pInt),dimension(:), allocatable :: myShape
integer(HID_T) :: dset_id, filespace_id, memspace_id, plist_id
logical, intent(in), optional :: parallel
integer :: ierr
integer(HDF5_ERR_TYPE) :: hdferr
integer(pInt), dimension(:), allocatable :: &
globalShape, & !< shape of the dataset (all processes)
localShape, & !< shape of the dataset (this process)
readSize !< contribution of all processes
integer(HSIZE_T), dimension(5) :: myStart
myShape = shape(dataset)
@ -392,13 +403,44 @@ subroutine HDF5_read_pReal_5(dataset,loc_id,datasetName)
!creating a property list for transfer properties
call h5pcreate_f(H5P_DATASET_XFER_F, plist_id, hdferr)
!--------------------------------------------------------------------------------------------------
! determine shape of dataset
localShape = shape(dataset)
allocate(readSize(worldsize), source = 0_pInt)
readSize(worldrank+1) = localShape(5)
#ifdef PETSc
if (present(parallel)) then; if (parallel) then
call h5pset_dxpl_mpio_f(plist_id, H5FD_MPIO_COLLECTIVE_F, hdferr)
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_read_pReal5: h5pset_dxpl_mpio_f')
call MPI_allreduce(MPI_IN_PLACE,readSize,worldsize,MPI_LONG,MPI_SUM,PETSC_COMM_WORLD,ierr) ! get total output size over each process
if (ierr /= 0) call IO_error(894_pInt,ext_msg='HDF5_read_pReal5: MPI_allreduce')
endif; endif
#endif
myStart = int([0,0,0,0,sum(readSize(1:worldrank))],HSIZE_T)
globalShape = [localShape(1:4),sum(readSize)]
!--------------------------------------------------------------------------------------------------
! open the dataset in the file
call h5dopen_f(loc_id,datasetName,dset_id,hdferr)
if (hdferr < 0) call IO_error(0_pInt,ext_msg='HDF5_read_pReal_shape5: h5dopen_f')
call h5dread_f(dset_id,H5T_NATIVE_DOUBLE,dataset,int(myShape,HSIZE_T),hdferr)
!--------------------------------------------------------------------------------------------------
!get the space_id of dataset in the file
call h5dget_space_f(dset_id, filespace_id, hdferr)
if (hdferr < 0) call IO_error(0_pInt,ext_msg='HDF5_read_pReal_shape5: h5dget_space_f')
!--------------------------------------------------------------------------------------------------
! select a hyperslab (the portion of the current process) in the file
call h5sselect_hyperslab_f(filespace_id, H5S_SELECT_SET_F, myStart, int(localShape,HSIZE_T), hdferr)
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_read_pReal5: h5sselect_hyperslab_f')
!--------------------------------------------------------------------------------------------------
! read
call h5dread_f(dset_id,H5T_NATIVE_DOUBLE,dataset,int(globalShape,HSIZE_T),hdferr)
if (hdferr < 0) call IO_error(0_pInt,ext_msg='HDF5_read_pReal_shape5: h5dread_f')
call h5dclose_f(dset_id,hdferr)
if (hdferr < 0) call IO_error(0_pInt,ext_msg='HDF5_read_pReal_shape5: h5dclose_f')
!--------------------------------------------------------------------------------------------------
! close property lists and datatypes
call h5pclose_f(plist_id, hdferr)
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_read_pReal5: plist_id')
call h5dclose_f(dset_id, hdferr)
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_read_pReal5: h5dclose_f')
end subroutine HDF5_read_pReal_5
@ -618,7 +660,6 @@ subroutine HDF5_read_pInt_7(dataset,loc_id,datasetName)
end subroutine HDF5_read_pInt_7
!--------------------------------------------------------------------------------------------------
!> @brief subroutine for writing dataset of type pReal with 1 dimensions
!--------------------------------------------------------------------------------------------------
@ -638,26 +679,29 @@ subroutine HDF5_write_pReal1(dataset,loc_id,datasetName,parallel)
globalShape, & !< shape of the dataset (all processes)
localShape, & !< shape of the dataset (this process)
outputSize !< contribution of all processes
integer :: ierr
integer(HDF5_ERR_TYPE) :: hdferr
integer :: ierr
integer(HID_T) :: dset_id, filespace_id, memspace_id, plist_id
integer(HSIZE_T), dimension(1) :: myStart
!-------------------------------------------------------------------------------------------------
! determine shape of dataset
localShape = shape(dataset)
if (any(localShape(1:size(localShape)) == 0)) return
call h5pcreate_f(H5P_DATASET_XFER_F, plist_id, hdferr)
!--------------------------------------------------------------------------------------------------
! determine shape of dataset
localShape = shape(dataset)
allocate(outputSize(worldsize), source = 0_pInt)
outputSize(worldrank+1) = localShape(1)
#ifdef PETSc
#ifdef PETSc
if (present(parallel)) then; if (parallel) then
call h5pset_dxpl_mpio_f(plist_id, H5FD_MPIO_COLLECTIVE_F, hdferr)
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_write_pReal1: h5pset_dxpl_mpio_f')
call MPI_allreduce(MPI_IN_PLACE,outputSize,worldsize,MPI_LONG,MPI_SUM,PETSC_COMM_WORLD,ierr) ! get total output size over each process
if (ierr /= 0) call IO_error(894_pInt,ext_msg='HDF5_write_pReal1: MPI_allreduce')
endif; endif
#endif
#endif
myStart = int([sum(outputSize(1:worldrank))],HSIZE_T)
globalShape = [localShape(1:0),sum(outputSize)]
@ -693,15 +737,15 @@ subroutine HDF5_write_pReal1(dataset,loc_id,datasetName,parallel)
!--------------------------------------------------------------------------------------------------
!close types, dataspaces
call h5pclose_f(plist_id, hdferr)
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_write_pReal1: plist_id')
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_write_PReal1: plist_id')
call h5dclose_f(dset_id, hdferr)
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_write_pReal1: h5dclose_f')
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_write_PReal1: h5dclose_f')
call h5sclose_f(filespace_id, hdferr)
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_write_pReal1: h5sclose_f/filespace_id')
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_write_PReal1: h5sclose_f/filespace_id')
call h5sclose_f(memspace_id, hdferr)
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_write_pReal1: h5sclose_f/memspace_id')
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_write_PReal1: h5sclose_f/memspace_id')
end subroutine HDF5_write_pReal1
end subroutine HDF5_write_PReal1
!--------------------------------------------------------------------------------------------------
@ -723,16 +767,19 @@ subroutine HDF5_write_pReal2(dataset,loc_id,datasetName,parallel)
globalShape, & !< shape of the dataset (all processes)
localShape, & !< shape of the dataset (this process)
outputSize !< contribution of all processes
integer :: ierr
integer(HDF5_ERR_TYPE) :: hdferr
integer :: ierr
integer(HID_T) :: dset_id, filespace_id, memspace_id, plist_id
integer(HSIZE_T), dimension(2) :: myStart
!-------------------------------------------------------------------------------------------------
! determine shape of dataset
localShape = shape(dataset)
if (any(localShape(1:size(localShape)) == 0)) return
call h5pcreate_f(H5P_DATASET_XFER_F, plist_id, hdferr)
!--------------------------------------------------------------------------------------------------
! determine shape of dataset
localShape = shape(dataset)
allocate(outputSize(worldsize), source = 0_pInt)
outputSize(worldrank+1) = localShape(2)
#ifdef PETSc
@ -740,7 +787,7 @@ subroutine HDF5_write_pReal2(dataset,loc_id,datasetName,parallel)
call h5pset_dxpl_mpio_f(plist_id, H5FD_MPIO_COLLECTIVE_F, hdferr)
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_write_pReal2: h5pset_dxpl_mpio_f')
call MPI_allreduce(MPI_IN_PLACE,outputSize,worldsize,MPI_LONG,MPI_SUM,PETSC_COMM_WORLD,ierr) ! get total output size over each process
if (ierr /= 0) call IO_error(894_pInt,ext_msg='HDF5_write_pReal2: MPI_allreduce')
if (ierr /= 0) call IO_error(894_pInt,ext_msg='HDF5_write_pInt2: MPI_allreduce')
endif; endif
#endif
myStart = int([0,sum(outputSize(1:worldrank))],HSIZE_T)
@ -808,16 +855,19 @@ subroutine HDF5_write_pReal3(dataset,loc_id,datasetName,parallel)
globalShape, & !< shape of the dataset (all processes)
localShape, & !< shape of the dataset (this process)
outputSize !< contribution of all processes
integer :: ierr
integer(HDF5_ERR_TYPE) :: hdferr
integer :: ierr
integer(HID_T) :: dset_id, filespace_id, memspace_id, plist_id
integer(HSIZE_T), dimension(3) :: myStart
!-------------------------------------------------------------------------------------------------
! determine shape of dataset
localShape = shape(dataset)
if (any(localShape(1:size(localShape)) == 0)) return
call h5pcreate_f(H5P_DATASET_XFER_F, plist_id, hdferr)
!--------------------------------------------------------------------------------------------------
! determine shape of dataset
localShape = shape(dataset)
allocate(outputSize(worldsize), source = 0_pInt)
outputSize(worldrank+1) = localShape(3)
#ifdef PETSc
@ -825,7 +875,7 @@ subroutine HDF5_write_pReal3(dataset,loc_id,datasetName,parallel)
call h5pset_dxpl_mpio_f(plist_id, H5FD_MPIO_COLLECTIVE_F, hdferr)
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_write_pReal3: h5pset_dxpl_mpio_f')
call MPI_allreduce(MPI_IN_PLACE,outputSize,worldsize,MPI_LONG,MPI_SUM,PETSC_COMM_WORLD,ierr) ! get total output size over each process
if (ierr /= 0) call IO_error(894_pInt,ext_msg='HDF5_write_pReal3: MPI_allreduce')
if (ierr /= 0) call IO_error(894_pInt,ext_msg='HDF5_write_pInt3: MPI_allreduce')
endif; endif
#endif
myStart = int([0,0,sum(outputSize(1:worldrank))],HSIZE_T)
@ -893,16 +943,19 @@ subroutine HDF5_write_pReal4(dataset,loc_id,datasetName,parallel)
globalShape, & !< shape of the dataset (all processes)
localShape, & !< shape of the dataset (this process)
outputSize !< contribution of all processes
integer :: ierr
integer(HDF5_ERR_TYPE) :: hdferr
integer :: ierr
integer(HID_T) :: dset_id, filespace_id, memspace_id, plist_id
integer(HSIZE_T), dimension(4) :: myStart
!-------------------------------------------------------------------------------------------------
! determine shape of dataset
localShape = shape(dataset)
if (any(localShape(1:size(localShape)) == 0)) return
call h5pcreate_f(H5P_DATASET_XFER_F, plist_id, hdferr)
!--------------------------------------------------------------------------------------------------
! determine shape of dataset
localShape = shape(dataset)
allocate(outputSize(worldsize), source = 0_pInt)
outputSize(worldrank+1) = localShape(4)
#ifdef PETSc
@ -910,7 +963,7 @@ subroutine HDF5_write_pReal4(dataset,loc_id,datasetName,parallel)
call h5pset_dxpl_mpio_f(plist_id, H5FD_MPIO_COLLECTIVE_F, hdferr)
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_write_pReal4: h5pset_dxpl_mpio_f')
call MPI_allreduce(MPI_IN_PLACE,outputSize,worldsize,MPI_LONG,MPI_SUM,PETSC_COMM_WORLD,ierr) ! get total output size over each process
if (ierr /= 0) call IO_error(894_pInt,ext_msg='HDF5_write_pReal4: MPI_allreduce')
if (ierr /= 0) call IO_error(894_pInt,ext_msg='HDF5_write_pInt4: MPI_allreduce')
endif; endif
#endif
myStart = int([0,0,0,sum(outputSize(1:worldrank))],HSIZE_T)
@ -978,16 +1031,19 @@ subroutine HDF5_write_pReal5(dataset,loc_id,datasetName,parallel)
globalShape, & !< shape of the dataset (all processes)
localShape, & !< shape of the dataset (this process)
outputSize !< contribution of all processes
integer :: ierr
integer(HDF5_ERR_TYPE) :: hdferr
integer :: ierr
integer(HID_T) :: dset_id, filespace_id, memspace_id, plist_id
integer(HSIZE_T), dimension(5) :: myStart
!-------------------------------------------------------------------------------------------------
! determine shape of dataset
localShape = shape(dataset)
if (any(localShape(1:size(localShape)) == 0)) return
call h5pcreate_f(H5P_DATASET_XFER_F, plist_id, hdferr)
!--------------------------------------------------------------------------------------------------
! determine shape of dataset
localShape = shape(dataset)
allocate(outputSize(worldsize), source = 0_pInt)
outputSize(worldrank+1) = localShape(5)
#ifdef PETSc
@ -995,7 +1051,7 @@ subroutine HDF5_write_pReal5(dataset,loc_id,datasetName,parallel)
call h5pset_dxpl_mpio_f(plist_id, H5FD_MPIO_COLLECTIVE_F, hdferr)
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_write_pReal5: h5pset_dxpl_mpio_f')
call MPI_allreduce(MPI_IN_PLACE,outputSize,worldsize,MPI_LONG,MPI_SUM,PETSC_COMM_WORLD,ierr) ! get total output size over each process
if (ierr /= 0) call IO_error(894_pInt,ext_msg='HDF5_write_pReal5: MPI_allreduce')
if (ierr /= 0) call IO_error(894_pInt,ext_msg='HDF5_write_pInt5: MPI_allreduce')
endif; endif
#endif
myStart = int([0,0,0,0,sum(outputSize(1:worldrank))],HSIZE_T)
@ -1063,16 +1119,19 @@ subroutine HDF5_write_pReal6(dataset,loc_id,datasetName,parallel)
globalShape, & !< shape of the dataset (all processes)
localShape, & !< shape of the dataset (this process)
outputSize !< contribution of all processes
integer :: ierr
integer(HDF5_ERR_TYPE) :: hdferr
integer :: ierr
integer(HID_T) :: dset_id, filespace_id, memspace_id, plist_id
integer(HSIZE_T), dimension(6) :: myStart
!-------------------------------------------------------------------------------------------------
! determine shape of dataset
localShape = shape(dataset)
if (any(localShape(1:size(localShape)) == 0)) return
call h5pcreate_f(H5P_DATASET_XFER_F, plist_id, hdferr)
!--------------------------------------------------------------------------------------------------
! determine shape of dataset
localShape = shape(dataset)
allocate(outputSize(worldsize), source = 0_pInt)
outputSize(worldrank+1) = localShape(6)
#ifdef PETSc
@ -1080,7 +1139,7 @@ subroutine HDF5_write_pReal6(dataset,loc_id,datasetName,parallel)
call h5pset_dxpl_mpio_f(plist_id, H5FD_MPIO_COLLECTIVE_F, hdferr)
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_write_pReal6: h5pset_dxpl_mpio_f')
call MPI_allreduce(MPI_IN_PLACE,outputSize,worldsize,MPI_LONG,MPI_SUM,PETSC_COMM_WORLD,ierr) ! get total output size over each process
if (ierr /= 0) call IO_error(894_pInt,ext_msg='HDF5_write_pReal6: MPI_allreduce')
if (ierr /= 0) call IO_error(894_pInt,ext_msg='HDF5_write_pInt6: MPI_allreduce')
endif; endif
#endif
myStart = int([0,0,0,0,0,sum(outputSize(1:worldrank))],HSIZE_T)
@ -1148,16 +1207,19 @@ subroutine HDF5_write_pReal7(dataset,loc_id,datasetName,parallel)
globalShape, & !< shape of the dataset (all processes)
localShape, & !< shape of the dataset (this process)
outputSize !< contribution of all processes
integer :: ierr
integer(HDF5_ERR_TYPE) :: hdferr
integer :: ierr
integer(HID_T) :: dset_id, filespace_id, memspace_id, plist_id
integer(HSIZE_T), dimension(7) :: myStart
!-------------------------------------------------------------------------------------------------
! determine shape of dataset
localShape = shape(dataset)
if (any(localShape(1:size(localShape)) == 0)) return
call h5pcreate_f(H5P_DATASET_XFER_F, plist_id, hdferr)
!--------------------------------------------------------------------------------------------------
! determine shape of dataset
localShape = shape(dataset)
allocate(outputSize(worldsize), source = 0_pInt)
outputSize(worldrank+1) = localShape(7)
#ifdef PETSc
@ -1165,7 +1227,7 @@ subroutine HDF5_write_pReal7(dataset,loc_id,datasetName,parallel)
call h5pset_dxpl_mpio_f(plist_id, H5FD_MPIO_COLLECTIVE_F, hdferr)
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_write_pReal7: h5pset_dxpl_mpio_f')
call MPI_allreduce(MPI_IN_PLACE,outputSize,worldsize,MPI_LONG,MPI_SUM,PETSC_COMM_WORLD,ierr) ! get total output size over each process
if (ierr /= 0) call IO_error(894_pInt,ext_msg='HDF5_write_pReal7: MPI_allreduce')
if (ierr /= 0) call IO_error(894_pInt,ext_msg='HDF5_write_pInt7: MPI_allreduce')
endif; endif
#endif
myStart = int([0,0,0,0,0,0,sum(outputSize(1:worldrank))],HSIZE_T)
@ -1214,8 +1276,10 @@ subroutine HDF5_write_pReal7(dataset,loc_id,datasetName,parallel)
end subroutine HDF5_write_pReal7
!--------------------------------------------------------------------------------------------------
!> @brief subroutine for writing dataset of the type pInt with 1 dimensions
!> @brief subroutine for writing dataset of type pInt with 1 dimensions
!--------------------------------------------------------------------------------------------------
subroutine HDF5_write_pInt1(dataset,loc_id,datasetName,parallel)
use numerics, only: &
@ -1238,12 +1302,14 @@ subroutine HDF5_write_pInt1(dataset,loc_id,datasetName,parallel)
integer(HID_T) :: dset_id, filespace_id, memspace_id, plist_id
integer(HSIZE_T), dimension(1) :: myStart
call h5pcreate_f(H5P_DATASET_XFER_F, plist_id, hdferr)
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_write_pInt1: h5pcreate_f')
!--------------------------------------------------------------------------------------------------
!-------------------------------------------------------------------------------------------------
! determine shape of dataset
localShape = shape(dataset)
if (any(localShape(1:size(localShape)) == 0)) return
call h5pcreate_f(H5P_DATASET_XFER_F, plist_id, hdferr)
!--------------------------------------------------------------------------------------------------
allocate(outputSize(worldsize), source = 0_pInt)
outputSize(worldrank+1) = localShape(1)
#ifdef PETSc
@ -1324,12 +1390,14 @@ subroutine HDF5_write_pInt2(dataset,loc_id,datasetName,parallel)
integer(HID_T) :: dset_id, filespace_id, memspace_id, plist_id
integer(HSIZE_T), dimension(2) :: myStart
call h5pcreate_f(H5P_DATASET_XFER_F, plist_id, hdferr)
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_write_pInt2: h5pcreate_f')
!--------------------------------------------------------------------------------------------------
!-------------------------------------------------------------------------------------------------
! determine shape of dataset
localShape = shape(dataset)
if (any(localShape(1:size(localShape)) == 0)) return
call h5pcreate_f(H5P_DATASET_XFER_F, plist_id, hdferr)
!--------------------------------------------------------------------------------------------------
allocate(outputSize(worldsize), source = 0_pInt)
outputSize(worldrank+1) = localShape(2)
#ifdef PETSc
@ -1410,12 +1478,14 @@ subroutine HDF5_write_pInt3(dataset,loc_id,datasetName,parallel)
integer(HID_T) :: dset_id, filespace_id, memspace_id, plist_id
integer(HSIZE_T), dimension(3) :: myStart
call h5pcreate_f(H5P_DATASET_XFER_F, plist_id, hdferr)
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_write_pInt3: h5pcreate_f')
!--------------------------------------------------------------------------------------------------
!-------------------------------------------------------------------------------------------------
! determine shape of dataset
localShape = shape(dataset)
if (any(localShape(1:size(localShape)) == 0)) return
call h5pcreate_f(H5P_DATASET_XFER_F, plist_id, hdferr)
!--------------------------------------------------------------------------------------------------
allocate(outputSize(worldsize), source = 0_pInt)
outputSize(worldrank+1) = localShape(3)
#ifdef PETSc
@ -1496,12 +1566,14 @@ subroutine HDF5_write_pInt4(dataset,loc_id,datasetName,parallel)
integer(HID_T) :: dset_id, filespace_id, memspace_id, plist_id
integer(HSIZE_T), dimension(4) :: myStart
call h5pcreate_f(H5P_DATASET_XFER_F, plist_id, hdferr)
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_write_pInt4: h5pcreate_f')
!--------------------------------------------------------------------------------------------------
!-------------------------------------------------------------------------------------------------
! determine shape of dataset
localShape = shape(dataset)
if (any(localShape(1:size(localShape)) == 0)) return
call h5pcreate_f(H5P_DATASET_XFER_F, plist_id, hdferr)
!--------------------------------------------------------------------------------------------------
allocate(outputSize(worldsize), source = 0_pInt)
outputSize(worldrank+1) = localShape(4)
#ifdef PETSc
@ -1582,12 +1654,14 @@ subroutine HDF5_write_pInt5(dataset,loc_id,datasetName,parallel)
integer(HID_T) :: dset_id, filespace_id, memspace_id, plist_id
integer(HSIZE_T), dimension(5) :: myStart
call h5pcreate_f(H5P_DATASET_XFER_F, plist_id, hdferr)
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_write_pInt5: h5pcreate_f')
!--------------------------------------------------------------------------------------------------
!-------------------------------------------------------------------------------------------------
! determine shape of dataset
localShape = shape(dataset)
if (any(localShape(1:size(localShape)) == 0)) return
call h5pcreate_f(H5P_DATASET_XFER_F, plist_id, hdferr)
!--------------------------------------------------------------------------------------------------
allocate(outputSize(worldsize), source = 0_pInt)
outputSize(worldrank+1) = localShape(5)
#ifdef PETSc
@ -1668,12 +1742,14 @@ subroutine HDF5_write_pInt6(dataset,loc_id,datasetName,parallel)
integer(HID_T) :: dset_id, filespace_id, memspace_id, plist_id
integer(HSIZE_T), dimension(6) :: myStart
call h5pcreate_f(H5P_DATASET_XFER_F, plist_id, hdferr)
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_write_pInt6: h5pcreate_f')
!--------------------------------------------------------------------------------------------------
!-------------------------------------------------------------------------------------------------
! determine shape of dataset
localShape = shape(dataset)
if (any(localShape(1:size(localShape)) == 0)) return
call h5pcreate_f(H5P_DATASET_XFER_F, plist_id, hdferr)
!--------------------------------------------------------------------------------------------------
allocate(outputSize(worldsize), source = 0_pInt)
outputSize(worldrank+1) = localShape(6)
#ifdef PETSc
@ -1754,12 +1830,14 @@ subroutine HDF5_write_pInt7(dataset,loc_id,datasetName,parallel)
integer(HID_T) :: dset_id, filespace_id, memspace_id, plist_id
integer(HSIZE_T), dimension(7) :: myStart
call h5pcreate_f(H5P_DATASET_XFER_F, plist_id, hdferr)
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_write_pInt7: h5pcreate_f')
!--------------------------------------------------------------------------------------------------
!-------------------------------------------------------------------------------------------------
! determine shape of dataset
localShape = shape(dataset)
if (any(localShape(1:size(localShape)) == 0)) return
call h5pcreate_f(H5P_DATASET_XFER_F, plist_id, hdferr)
!--------------------------------------------------------------------------------------------------
allocate(outputSize(worldsize), source = 0_pInt)
outputSize(worldrank+1) = localShape(7)
#ifdef PETSc
@ -1820,3 +1898,7 @@ end module HDF5_Utilities