c6c77b64d2
following renames in grid_filter
2019-12-07 20:08:31 +01:00
e283acd606
correct way of importing for newer python versions
2019-12-07 20:07:46 +01:00
0b04f6a3bb
Merge branch 'development' into grid-filters
2019-12-07 10:52:00 +01:00
96710a238d
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into incs-no-leading-zero
2019-12-06 15:25:21 +01:00
a41871e2ac
Merge branch 'new-ASCII' into 'development'
...
New table class
See merge request damask/DAMASK!104
2019-12-06 14:58:16 +01:00
f2ac87eb2f
follow changes in Table class
2019-12-06 04:22:18 +01:00
f475d1a0d0
adjusted to changes in table class
2019-12-05 13:35:06 +01:00
0eddd8a5c2
Merge branch 'new-ASCII' into grid-filters
2019-12-05 13:28:18 +01:00
90fdb24faa
forgotten variable rename
2019-12-05 13:26:33 +01:00
274aaa7359
Merge branch 'new-ASCII' into grid-filters
2019-12-05 10:50:56 +01:00
1018b89296
nice to have..
2019-12-05 10:48:42 +01:00
53a38e3a97
polishing
2019-12-05 10:37:13 +01:00
3af696995d
did not work when piping
2019-12-05 08:36:32 +01:00
469d638afb
making table class feature complete
2019-12-05 06:57:09 +01:00
ee8e3386f4
shorter but still descriptive names
2019-12-05 06:16:29 +01:00
19c55990ab
works again and uses DADF5 intrisic features
2019-12-04 18:30:08 +01:00
999321e588
Merge branch 'new-ASCII' into grid-filters
2019-12-04 07:45:01 +01:00
58a190ede8
Merge branch 'development' into incs-no-leading-zero
2019-12-04 05:19:38 +01:00
9ad8743396
using central functionality
2019-12-03 22:00:21 +01:00
ff1778d149
Merge branch 'development' into new-ASCII
2019-12-03 15:56:49 +01:00
62ca2952fc
polishing
2019-12-03 11:27:14 +01:00
e2b13a5ca3
using de-facto standard naming
2019-11-29 19:32:18 +01:00
9b4252da68
smart handling of leading zeros
2019-11-29 16:58:11 +01:00
3e65d44e07
centralized facilities for differential operations
...
note the need to reverse the grid shape in data from the ASCII table. If x is fastest,
z is slowest we require x to be the rightmost index
2019-11-28 15:46:22 +01:00
4c4ccfe72e
not needed
2019-11-28 06:27:19 +01:00
a8016d64bb
simplified
2019-11-27 12:31:32 +01:00
cee095b58e
better use centralized code
2019-11-27 12:22:28 +01:00
7d4b982c73
make information on modifications mandatory
2019-11-27 12:08:23 +01:00
9ad74745c1
missing import detected by prospector
2019-11-27 08:48:41 +01:00
ab83dc2ebc
use central facilities
2019-11-27 08:45:01 +01:00
eb033e11b2
polishing
2019-11-27 08:44:38 +01:00
31d3958ca6
using fast new Table class
...
more a proof-of-concept since shell scripts are deprecated. The detailed
error handling of the former scripts is not implemented, i.e. the user
need to ensure that the files exist and the data has the correct shape
2019-11-26 22:59:42 +01:00
2d96136a0d
more general constructor for Table
...
reading from file is just one case (now handled by static method).
General constructor needs data and header information as dictionary.
Works only with python 3.7 where dict keeps the insertion order. Earlier
python versions/other implementations might fail.
2019-11-26 22:53:46 +01:00
845cfc34ec
similar logic as in geom class
...
- filename is not part of the object
- transparent handling of files, strings, and path-like objects for file
IO
2019-11-26 14:26:25 +01:00
81abc43920
Merge branch 'development' into new-ASCII
2019-11-26 10:29:05 +01:00
faeb5a98b4
Merge branch 'PythonImprovements' into no-crystallite
2019-11-25 21:41:38 +01:00
592878d364
need to invoke function
2019-11-25 17:29:13 +01:00
406ca39b2c
ASCII table unable to handle inhomogeneous situations
2019-11-24 21:23:43 +01:00
3e8518d861
following prospector guidelines
2019-11-24 19:30:00 +01:00
c9f9f7c681
pack causes trouble with tests ..
2019-11-24 19:02:19 +01:00
b2cdabd009
getting rid of shell scripts
2019-11-24 18:25:53 +01:00
816e86ae5f
phasing out python shell scripts
2019-11-24 15:13:26 +01:00
8186be6293
compress functionality should be part of the geom class
...
automated decision is base on heuristic whether compression is memory
efficient
2019-11-24 14:27:24 +01:00
6060abb375
cleaning
2019-11-24 09:10:47 +01:00
c9b1944493
handling of derived datatypes/structs
...
currently required for orientation
2019-11-24 08:50:27 +01:00
dfb95df689
migrating shell scripts to python class
2019-11-22 21:48:41 +01:00
fb286af354
[skip sc] first draft
2019-10-31 10:47:40 +01:00
a2e4917d3b
not needed for DADF5
2019-10-20 19:25:09 +02:00
da79949c2a
old python2 script, not needed for DADF5
2019-10-19 23:14:17 +02:00
f4a0a5cfe5
substitute error introduced when enabling MSC.Marc
2019-10-18 22:03:31 +02:00
bd7b5ad27b
old python2.7 scripts with only a loose connection to DAMASK
...
if needed, simply take them from an old release version
2019-10-18 21:46:44 +02:00
b70ad9ff54
Merge branch 'development' into DADF5-improvements
2019-10-18 20:54:54 +02:00
f8ffd7e39c
added specifics to resulting column label (sum or prod)
2019-10-18 09:30:43 -04:00
edcb8f9c4d
name change in development
2019-10-18 12:55:15 +02:00
de912c22b4
Merge branch 'development' into HDF5-spectral-displacements
2019-10-18 12:54:12 +02:00
76236a4a0c
direct initialization (float64 is anyway standard)
2019-10-17 22:41:18 +02:00
03a3edc128
added option to multiply values instead of summing them
2019-10-17 13:23:14 -04:00
91691744c6
Merge branch 'Marc-No-nonlocal' into 'development'
...
Marc no nonlocal
See merge request damask/DAMASK!98
2019-10-15 10:35:37 +02:00
d73e653f50
support for unstructured grid (FEM)
2019-10-14 14:13:03 +02:00
708bbd3cb9
mesh/grid type transparent handling of coordinates
2019-10-12 16:15:04 +02:00
513f1c6726
write out point data
...
might be possible to use a rectilinear grid for this also in the case of
grid solvers
2019-10-12 12:34:37 +02:00
b208fa6565
takeover from Vitesh's work with small adoptions to current DADF5
2019-10-12 08:02:57 +02:00
3206ee04bc
nodal displacements for grid solver
...
currently for non-MPI only
2019-09-27 20:38:02 -07:00
8793050329
fixed handling of subfolders
...
now inline with post results.
Still a little bit unclear what happens if an absolute directory is
given. Probably best to either specify absolute or relative with respect
to working directory
2019-09-19 16:10:07 -07:00
4cedcee0b4
handling of increments follows handling of other 'visible'-items
2019-09-15 17:08:03 -07:00
f6ac8c995f
simplified and selected better names
2019-09-15 16:00:19 -07:00
04aefa84bc
more appropriate names
2019-09-15 15:02:16 -07:00
de316f1afe
Merge remote-tracking branch 'origin/development' into even-more-HDF5-postprocessing
2019-09-14 12:48:42 -07:00
b85ac11c49
implemented ideas from discussion with Philip
...
group matching unified and with wildcard support
time step handling should become more convenient (WIP)
add_norm can not compute abs of scalar, added function for that
general polishing here and there
2019-09-14 09:07:23 -07:00
c13db4b3ca
renaming
...
on_air/active are not clear. visible seems to be the most appropriate
name
2019-09-13 21:49:22 -07:00
a6567e0cc6
safer to use functions
...
don't mess with attributes of the object, they might be renamed
2019-09-13 21:41:35 -07:00
002383afc2
solved problem with postprocessing
...
- to not 'try' with h5py library, it might have another 'try'. Check
explicitly for empty argument
also some polishing
2019-09-13 16:01:30 -07:00
52904a81dc
taking prospector complaints serious
2019-09-13 06:49:25 -07:00
a3c6f6682e
using eigh should ensure orthogonal eigenvectors
2019-09-13 06:42:01 -07:00
890a6cf42f
avoid floating point comparison and simply play it safe
2019-09-13 06:40:41 -07:00
0497b58629
use existing functionality
2019-09-13 06:38:22 -07:00
cd6a4d1cfd
that's all we need
2019-09-13 06:37:47 -07:00
66d8a3e601
stretch is symmetric (play it safe here)
2019-09-13 06:35:48 -07:00
79d2432c6c
R not needed
2019-09-13 06:33:00 -07:00
49b3cd2145
transpose evuivalent for rot but faster
2019-09-13 06:32:05 -07:00
462bb07efd
Merge branch 'development' into even-more-HDF5-postprocessing
2019-09-11 16:29:44 -07:00
926217fcb6
added possibility to reduce rotation to specific fundamental zone, and to output 3-dim Rodrigues vector
2019-09-10 15:09:27 -04:00
d446248d75
also ouptut materialpoint results if requested
2019-07-15 17:07:04 -07:00
b6bb8a4650
simple strain calculation for DADF5
...
further enhancement requires to give optional arguments to
add_genericpontwise
2019-07-06 21:41:29 -07:00
a8ed982706
[skip ci] better name
2019-06-15 07:31:30 +02:00
eb8be13203
missing import
2019-06-14 17:27:00 +02:00
1cf9c59850
standardizing
...
import follows PEP style guide, encoding not needed for python3
2019-06-14 13:03:30 +02:00
4ff3efb1a5
to 'stack' tables
2019-06-13 23:14:40 +02:00
bffeaa980d
restored Martin's logic, not clear why seemed to be broken with PE's former tests...
2019-06-03 14:43:23 -04:00
8d52a3d52a
polishing of geom_rescale; adopted modified testing reference
2019-06-03 14:15:23 -04:00
2870fdb25b
fixed buggy version
2019-06-03 13:39:45 -04:00
89e4bc800c
removed default size to adjust to changes in geom-class
2019-06-03 13:38:48 -04:00
60031cc806
changed periodic option to reflect to better reflect what happens
2019-06-03 13:35:37 -04:00
7ea417d585
rotated geometry maintains center of gravity
2019-06-03 13:30:14 -04:00
615ff4ed06
[skip ci] vectorized
2019-05-31 23:26:32 +02:00
bf27505faa
Merge branch 'development' into geometry-class
2019-05-31 16:21:50 +02:00
02671c5c03
bugfix
...
shoud now work for any possible combination of new and old grid and
offset
2019-05-31 15:58:47 +02:00
979145f023
vectorized
2019-05-31 10:27:26 +02:00
46f0ad052e
direct support for vtk output
...
- geom_check can now handle multiple files
- microstructure index is stored as integer in vtk file
2019-05-30 15:35:45 +02:00
08052737cf
if grid is an option, it is a tuple
...
tuples do not have the prod() function
2019-05-30 14:28:31 +02:00
c2a5f37818
round to reasonable precision
...
without symmetry, there are 36000**3 = 46656000000000 orientations
2019-05-30 14:11:54 +02:00
bf60cffab5
cleaning
2019-05-30 14:07:49 +02:00
d0c7f8b934
texture is typically the more interesting information
...
therefore, but it to the top
2019-05-30 14:05:45 +02:00
8380071564
using geom class
...
- dropped the use of the material class as it does not allow to have
empty phase and crystallite. The material.config class needs a severe
refurbishing (no crystallite, use orderedDict instead of hand written
solution, drop of texture components). Probably best solution is to
postpone this until we have a yaml/json reader for Fortran.
2019-05-30 13:30:38 +02:00
7d07a3752f
polishing
2019-05-30 13:30:18 +02:00
461611cde7
polishing
2019-05-30 11:26:47 +02:00
49c3903cc7
explicit loop for simpler code
...
- no invalid combintations any more (allow to move the original
microstructure out of the new canvas)
- handling of origin needs discussion. When we want to recover the old
behavior, the origin might be located outside of the new geometry
2019-05-30 11:26:07 +02:00
e974bb9c43
similar structure for building blocks
2019-05-30 10:45:17 +02:00
510b55df50
several improvements
...
- more error checking
- order of points can be arbitrary also for microstructure input
- grouping of same orientation/phase combinations
2019-05-30 10:33:01 +02:00
931fa9d36a
standardized and cleaned
...
-write to file if given
-type casting is done in the geom class
2019-05-30 10:20:07 +02:00
07276d511c
modern python formatting
...
- 2 digits should be precise enough for euler angles
- no need to pad grain ID with leading zeros
2019-05-30 10:03:55 +02:00
73df615ff3
numpy meshgrid can do this now
2019-05-30 09:45:30 +02:00
4e0e5a2329
new python formatting style
2019-05-30 09:41:22 +02:00
f30eda0267
no need to loop over files
...
will procude the same file over and over again
2019-05-30 09:32:37 +02:00
cdc8338347
full (not periodic) mirroring is geom_mirror default behavior
2019-05-29 20:22:29 -06:00
d79f0c6290
replace geom_canvas --blank with geom_fromScratch
2019-05-29 20:02:06 -06:00
fd9801ba09
StringIO not needed
2019-05-29 19:44:38 +02:00
d7e8a66746
polishing
2019-05-29 14:18:11 +02:00
16bd5294aa
loop order as intented
2019-05-29 14:06:39 +02:00
78f30684f8
moderized
...
needs some polishing with respect to array orders
2019-05-29 09:40:56 +02:00
6836a2eae8
better readable
2019-05-29 08:04:01 +02:00
dfc2b47abc
better readable
2019-05-29 08:01:00 +02:00
8ee23b37b2
should not be part of the repo
2019-05-29 07:52:44 +02:00
bb6f54963a
save some memory (avoid copies if not needed)
2019-05-29 07:49:43 +02:00
9f68923038
restored old behavior
...
save some ressources by avoiding copies.
much slower than old version, better cast formula into meshgrid again
2019-05-29 07:38:11 +02:00
2eb964b1ea
simplified
...
needs some manual checking and proper test
2019-05-28 23:49:11 +02:00
100a2031d3
[skip ci] no white space needed
2019-05-28 07:55:24 +02:00
1f56ac6a4a
streamlining and bugfixing of geom-class
2019-05-27 22:45:34 -06:00
b69f0efbbc
improved and simplified reporting
2019-05-27 22:00:26 +02:00
5abcca50ee
Merge branch 'more-HDF5-postprocessing-cleaned' into development
2019-05-27 12:17:12 +02:00
59c6c5cfe4
not needed anymore
...
essentially, (gauss) is an Euler angle triplet
2019-05-27 10:49:50 +02:00
6e06764e2d
using (enhanced) central functionality
2019-05-27 08:38:02 +02:00
d9ab87cfde
crystallite will be removed soon, error handling is done by geom class
2019-05-27 08:35:24 +02:00
5cf63bbbc3
vtk 7 is out for more than 3 years
2019-05-27 08:34:36 +02:00
b5cec797c0
cleaned
2019-05-26 23:03:31 +02:00
c8dfba89e5
using class
...
still a very complex script
2019-05-26 22:49:05 +02:00
15d5a7ae28
don't access attributes directly
2019-05-26 22:08:14 +02:00
f251cdb746
simplified
2019-05-26 22:07:50 +02:00
af493cf9fd
using class
...
needs more memory, but should be faster and is better readable
2019-05-26 21:32:08 +02:00
99da46fda8
polished
2019-05-26 20:36:41 +02:00
657a30c2f5
using new functionality
2019-05-26 18:51:27 +02:00
feb2340935
self-reporting functionality for updating
2019-05-26 17:58:54 +02:00
34f7bbe2a0
'blank' option does not fit to flow of script
...
seeds_fromRandom -N 1 | geom_fromVoronoiTessellation -g 30 30 30 -s 1 1 1 > file.geom
or a few lines of python code give the same results
2019-05-26 13:06:22 +02:00
e7b8ae08d0
polishing
2019-05-26 12:14:48 +02:00
974f67ffdc
no frills
2019-05-26 12:06:51 +02:00
be3513d1e0
polishing.
...
python imports follow PEP8
2019-05-26 09:49:56 +02:00
a242382bed
Merge branch 'geometry-class' of magit1.mpie.de:/damask/DAMASK into geometry-class
2019-05-26 09:19:29 +02:00
b13aa799c3
updated error message
2019-05-25 17:00:41 +02:00
c89d344236
polishing
2019-05-25 13:51:05 +02:00
2b7d95f800
was accidently commited
...
gives different results due to interpolation from scipy
2019-05-25 12:09:09 +02:00
c92969787a
geom Class was updated
2019-05-25 11:56:06 +02:00
94f85b7f33
better readable
2019-05-25 10:45:58 +02:00
fc1f65c34e
works for dtype='float'
2019-05-25 10:36:46 +02:00
875643c363
same style
2019-05-25 10:24:45 +02:00
17eb0d1b20
using new class
2019-05-25 08:48:44 +02:00
4788fc6046
making use of new class
...
@philip: 1D arrangement needed?
2019-05-25 08:37:02 +02:00
6c7f7c77da
specifying non-existing or invalid files is an user error
...
this is the standard behavior for common unix tools, no need to make an
exception here
2019-05-25 08:24:32 +02:00
cf374a04dc
using new class
2019-05-25 08:21:00 +02:00
420abfa162
use new class
2019-05-24 22:34:27 +02:00
eb13fbc0ce
streamlined geom-info reporting; added --float option to some scripts; hardened against NaN; "microstructures" now reports uniques not max
2019-05-23 13:03:24 -04:00
e6cec6ecbe
added option to reverse inside/outside of primitive body
2019-05-23 12:49:03 -04:00
339b86f784
bugfix + more verbose reporting
2019-05-16 11:44:03 +02:00
9f7fa5393a
fix for scalar datasets
2019-05-16 09:31:13 +02:00
4599d1c34e
does not match
...
node does not make sense, is weirdly numbered
2019-05-16 00:42:22 +02:00
3c0c0a2cd1
more flexible in selecting data
2019-05-16 00:27:06 +02:00
998789528c
Merge branch 'HDF5-out-homog-2' into 'development'
...
Hdf5 out homog 2
See merge request damask/DAMASK!78
2019-05-13 17:34:59 +02:00
feb1465803
Better to have actual increment num in output file
2019-05-08 17:31:18 +02:00
0cc2b1214d
store requested data in ASCII file
2019-05-07 15:18:12 +02:00
1eaf67ad82
store results in subdirectory
...
defaults to postProc
2019-05-07 13:30:05 +02:00
f65423fe9f
rudimentary postResults for HDF5 output
...
only meant for compatibility during transition
2019-05-05 10:09:23 +02:00
8a9baf6d78
preparing output of mech_homog to HDF5
2019-04-30 18:45:38 +02:00
d74599d39a
Merge branch 'HDF5-postprocessing' into 'development'
...
Hdf5 postprocessing
See merge request damask/DAMASK!72
2019-04-29 23:24:42 +02:00
6b7fd6b7ea
visualizing data from DADF5: first prototype
2019-04-18 11:58:17 +02:00
7177813710
adding data to geometry
2019-04-17 19:57:16 +02:00
8eb1a35dfb
first version of a library to parse HDF5
...
- preliminarly called DADF5 (DAMASK HDF5)
- script to write (empty undeformed) geometries is also added
2019-04-13 11:25:53 +02:00
0c6fde97f9
wrong positions for point visualization
...
- now the cell centers are at the centers of the cells for cell
visualization
2019-04-13 00:42:05 +02:00
ed7423a3d6
bug fixes
2019-03-10 08:16:01 +01:00
67619fa92a
consistent definition of axis angle
2019-03-09 20:18:28 +01:00
433281f71d
following Rowenhorst convention
2019-03-09 19:58:17 +01:00
0d08659b2a
general cleaning
2019-03-09 11:11:40 +01:00
60feb96afd
let vtk decide on the file extension
2019-03-09 11:11:40 +01:00
5ab8e50d09
consistent with reference paper
2019-03-08 19:07:19 +01:00
b84d4f1b6a
improved error handling/clearer messages
2019-03-05 10:58:57 +01:00
e030038b73
[skip ci] added --blank option to create fresh canvas (from nothing)
2019-02-27 19:37:38 -05:00
c706ca5ba3
no progress bars in quite mode
2019-02-26 21:22:49 -05:00
f3d2803443
addMises failed for single run of either --stress or --strain
2019-02-25 19:29:12 -05:00
2089726800
corrected output extension of vtk files to reflect binary format
2019-02-25 18:48:40 -05:00
e401c21266
dropped obsolete option --inplace from geom_check
2019-02-25 18:30:45 -05:00
e88182b007
improved converte, now with test
...
still needs to figure out how +P is handled
2019-02-24 14:39:34 +01:00
0d7fd587e3
direct translation from DREAM.3D to DAMASK geom
...
needs test
2019-02-24 12:59:10 +01:00
95be7ef938
directly convert to geom file + material config
2019-02-24 10:33:30 +01:00
903edcd429
do not patronize the user, rather give hints
2019-02-24 10:31:08 +01:00
d3ac3cc0f5
using new Orientation class
2019-02-24 08:34:20 +01:00
9dc8dff4b1
cleaning and adding compatibility layer
2019-02-23 22:35:04 +01:00
9fa2553af4
task for DREAM.3D if needed
...
pointwise takeover should not be a problem anymore as reading in takes
no time (at least in comparison to addGrainID)
2019-02-23 22:14:55 +01:00
a8e8b75cc0
use new rotation class
2019-02-23 22:13:24 +01:00
fff377de7f
initial simplification.
...
Should be able to generate from table containing either <microstructure>
or <texture> and <phase>
2019-02-23 22:06:31 +01:00
b3455c825e
transition to new orientation class
...
forward-backward conversion quite stable
2019-02-23 21:49:05 +01:00
e4bb61c9d9
transition to new orientation class/DREAM.3D
2019-02-23 11:37:09 +01:00
93ae5cbd07
Merge remote-tracking branch 'origin/development' into 10-consistent-orientation-conversions-3
2019-02-22 23:05:36 +01:00
Martin Diehl