7a7eea47b5
correct handling of arrays
...
all strains measures except for logarithmic had wrong off-diagonal
components
2019-11-21 19:46:05 +01:00
fb286af354
[skip sc] first draft
2019-10-31 10:47:40 +01:00
1c10459a5a
also use fast operation order
2019-10-30 21:09:17 +01:00
8a85123abc
4 space indent is python standard
2019-10-30 18:05:44 +01:00
b733bd3038
polar decomposition
2019-10-28 11:18:26 +01:00
fca288ae8a
performance improvement
...
this mapping is faster for large volumes
2019-10-25 14:47:36 +02:00
894b646283
corrected name of U,V; fixed Mises_strain factor from 3/2 to 2/3;
2019-10-23 15:03:24 +02:00
2d08eb68b1
bugfix for (3x3) version of Cauchy
2019-10-23 14:39:52 +02:00
5e7f9a223b
should be a passive rotation
2019-10-21 23:17:58 +02:00
9489c04ccb
less confusing
2019-10-21 23:02:31 +02:00
ecc51e34d3
rouding should affect color calculation
...
avoid NaN in math.power(x,0.5). math.power(-0.0,0.5) is ok
2019-10-21 22:44:12 +02:00
578cbf9bbf
bugfixes:
...
- vonMises calculation was wrong
- wrong type of data used in some add_XXX
2019-10-21 18:07:35 +02:00
78a2941436
avoid numerical issues
2019-10-21 16:59:49 +02:00
51ed4d68e6
more info
2019-10-20 13:13:48 +02:00
b593dfbfd9
better layout
2019-10-20 11:34:05 +02:00
f00f6952c0
selecting by increment is a common task
...
https://www.python.org/dev/peps/pep-0257/
The docstring is a phrase ending in a period. It prescribes the function or method's effect as
a command ("Do this", "Return that"), not as a description; e.g. don't write "Returns the pathname ...".
2019-10-20 11:00:10 +02:00
8f315836b0
easier to use if end time is included:
2019-10-20 10:42:45 +02:00
64731369e3
general definition for strain tensors
2019-10-19 16:05:53 +02:00
a665d5726d
polishing
2019-10-19 13:22:37 +02:00
b31de5d0f6
outsourcing tensor math to mechanics class
...
strain calculation is generalize to arbitrary order and simplified: No
need for svd, F^T F/F F^T does the job.
2019-10-19 12:54:16 +02:00
e51f6cee72
improved handling of string types for HDF5
...
- convert bytes to string when reading
- convert string to bytes when writing
2019-10-19 09:47:26 +02:00
5f0a48fae7
enhanced and documented
2019-10-19 08:51:51 +02:00
dc9aca5710
copy and paste error/invalid syntax
2019-10-18 20:57:36 +02:00
5858d03a6b
prospector complaints for stupid reasons
2019-10-18 20:55:39 +02:00
3336cfc3da
better have tensor functions available
...
allows in-memory evaluation of results
2019-10-18 20:50:03 +02:00
1a34a6f7b5
some useful tensor operations
2019-10-18 20:41:39 +02:00
47ba7d49b5
allow to use the same label twice in a function
2019-10-18 20:39:00 +02:00
de912c22b4
Merge branch 'development' into HDF5-spectral-displacements
2019-10-18 12:54:12 +02:00
91691744c6
Merge branch 'Marc-No-nonlocal' into 'development'
...
Marc no nonlocal
See merge request damask/DAMASK!98
2019-10-15 10:35:37 +02:00
708bbd3cb9
mesh/grid type transparent handling of coordinates
2019-10-12 16:15:04 +02:00
b208fa6565
takeover from Vitesh's work with small adoptions to current DADF5
2019-10-12 08:02:57 +02:00
0eef73935e
handling of derived types (orientation for the moment)
2019-10-11 08:35:21 +02:00
b8a1a5bb7d
v 0.2 is ok, not sure what the future brings so better check
2019-10-03 20:23:49 +02:00
0b29d08109
bump to DADF5 v0.3
...
contains displacements (for grid solver)
2019-10-03 19:02:17 +02:00
62fb4d2ea9
polishing
2019-10-01 14:30:09 -07:00
e96eb55edd
calculate different strain tensors
2019-09-30 14:28:58 -07:00
0e3b09adc1
negative eigenvalues are not possible
...
left/right Cauchy-Green Deformation Tensors are positive definit
https://de.wikipedia.org/wiki/Deformationsgradient
2019-09-30 14:12:15 -07:00
d95a795e3b
Merge branch 'MiscImprovements' into HDF5-spectral-displacements
2019-09-30 13:53:24 -07:00
0dd14a0652
correct reporting of version
2019-09-30 09:07:56 -07:00
457f9aa4e3
prospector found duplicated key
2019-09-30 08:53:53 -07:00
3206ee04bc
nodal displacements for grid solver
...
currently for non-MPI only
2019-09-27 20:38:02 -07:00
970d172160
correct message
2019-09-27 17:52:01 -07:00
ad83c8541d
same names as in python
2019-09-20 17:18:09 -07:00
fb61899c5f
seems that testing has Marc 2018.1 already
2019-09-20 20:54:30 +02:00
0b6620bfb7
Merge branch 'development' into MiscImprovements
...
F***ing commits to development!
2019-09-20 07:40:52 -07:00
4b2263bebe
conversion to float causes issues
...
test only current version of MSC.Marc
2019-09-20 03:21:53 +02:00
6fdab024b6
ensure that integer inputs to Rotation.fromX() translate into float quantities
2019-09-19 17:03:31 -04:00
7fd4b8bff6
more prospector hints
2019-09-19 12:51:16 -07:00
f1f88610dd
documenting
2019-09-19 12:32:15 -07:00
2e25a03d13
adopting to new prospector
2019-09-19 11:56:58 -07:00
35a009f513
prospector complaind
...
help details were anyway pretty useless
2019-09-19 11:41:41 -07:00
32639caec2
better readable
2019-09-19 11:12:44 -07:00
bf7db26680
Merge branch 'even-more-HDF5-postprocessing' into MiscImprovements
2019-09-19 10:49:14 -07:00
76b08e10bd
following stricter Python docstring standards
2019-09-18 21:43:43 -04:00
4994c86e67
bugfix: hard-wired keyword resulted in missing materialpoint results
2019-09-16 13:31:49 -07:00
ee1327c519
[skip ci] typo
2019-09-16 11:21:06 -07:00
28bb92021d
avoid code duplication
2019-09-16 11:04:05 -07:00
980c02b0c3
selected increments by simulation time
2019-09-15 20:19:14 -07:00
86fb0a7942
time info needed for filtering of increments
2019-09-15 20:04:52 -07:00
b3b710c848
polishing
2019-09-15 19:56:07 -07:00
4cedcee0b4
handling of increments follows handling of other 'visible'-items
2019-09-15 17:08:03 -07:00
f6ac8c995f
simplified and selected better names
2019-09-15 16:00:19 -07:00
c76d4d3f87
avoid unneeded arguments
2019-09-15 15:24:23 -07:00
88eba27cec
avoid name duplication + polishing
2019-09-15 15:10:32 -07:00
04aefa84bc
more appropriate names
2019-09-15 15:02:16 -07:00
d413aef7c3
functionality for general calculations on datasets
...
currently limited to vectorized expressions.
2019-09-14 12:00:23 -07:00
8251725bce
WIP: different norm types
2019-09-14 10:53:33 -07:00
e4e9c5f558
support glob matching
...
more flexibility in selecting active datasets and groups
2019-09-14 09:55:42 -07:00
b85ac11c49
implemented ideas from discussion with Philip
...
group matching unified and with wildcard support
time step handling should become more convenient (WIP)
add_norm can not compute abs of scalar, added function for that
general polishing here and there
2019-09-14 09:07:23 -07:00
c13db4b3ca
renaming
...
on_air/active are not clear. visible seems to be the most appropriate
name
2019-09-13 21:49:22 -07:00
898f53295d
iter functions for groups
...
restore original selection after iterating (i.e. temp setting of active)
polishing: correct names and more details for HDF5 meta data
2019-09-13 21:14:52 -07:00
69462f8190
polished
...
strain calculation agrees up to 1e-4 with results from addStrainTensors.
Not too exciting, but ok
2019-09-13 19:37:25 -07:00
38f6609ad7
high level functions for selecting output
...
tested Cauchy stress calculation (comparison with addCauchy.py)
2019-09-13 18:36:06 -07:00
c5006e264b
handling prospector complaints
2019-09-13 16:07:39 -07:00
002383afc2
solved problem with postprocessing
...
- to not 'try' with h5py library, it might have another 'try'. Check
explicitly for empty argument
also some polishing
2019-09-13 16:01:30 -07:00
b2b625af3e
notes from discussion with Philip
2019-09-13 15:17:46 -07:00
f83a167414
file mode for high level funtion not useful
2019-09-13 09:49:30 -07:00
6f008c5d5f
rewrite pointwise add function
...
- all vectorized: Much faster
- passing in all relevant information allows to do sanity checks and add
useful meta data in HDF5
- improved readability
2019-09-13 06:02:42 -07:00
3db3e9e762
preparing for use of optional arguments to function
2019-09-11 21:20:14 -07:00
de313269d9
bugfix
2019-09-11 18:54:54 -07:00
953ba53211
adjusting for strict prospector checking
2019-09-11 18:22:33 -07:00
a6c69a744b
do operations vectorized
2019-09-11 17:57:24 -07:00
462bb07efd
Merge branch 'development' into even-more-HDF5-postprocessing
2019-09-11 16:29:44 -07:00
bc893762ec
no need to inverse a rotation, transpose is faster
2019-09-11 07:29:34 -07:00
fa2c100d6a
need to update microstructure to get grid update
2019-09-04 20:20:55 -07:00
f415a8cad2
Merge branch 'PythonProspectorRules' into even-more-HDF5-postprocessing
2019-09-04 14:23:07 -07:00
28c11cc373
bugfix
...
-update function was resetting size if not given
-dim does not work an all terminals, therefore also emph new values in
addition to dim old ones
2019-09-04 11:14:44 -07:00
ef285b482f
more references + citation style correction
2019-09-04 08:55:05 -07:00
6f07a20919
not sure what this code was intended to do
2019-09-03 17:23:26 -07:00
3657f81c59
documenting (in accordance with new prospector rules)
2019-09-03 17:18:06 -07:00
a428a924eb
DAMASK default citation style
2019-09-03 16:34:02 -07:00
97fc8a4029
following python3 recommendations
2019-09-03 15:44:28 -07:00
234019bb4d
dummy stuff not needed
2019-09-03 15:41:16 -07:00
b0d3615d67
more detailed documentation
2019-09-03 15:32:01 -07:00
7d48764999
added documentation and references
2019-09-03 15:25:25 -07:00
a073f36471
update for solver wrappers
2019-09-03 09:48:42 -07:00
fea16327ac
now properly escaped
2019-09-02 23:42:34 -07:00
d84cef4fab
pep8: W605 / invalid escape sequence '\ ' seems to be a false positive
2019-09-02 23:37:52 -07:00
9cf4f9537e
documenting
2019-09-02 23:23:46 -07:00
ba395977db
adjusting to new prospector
2019-09-02 11:09:03 -07:00
34b3beda27
DefaultMap needed for newer paraview
2019-09-02 10:51:32 -07:00
c51cf8d506
transferring post processing capabilities
2019-07-15 13:55:14 -07:00
b6bb8a4650
simple strain calculation for DADF5
...
further enhancement requires to give optional arguments to
add_genericpontwise
2019-07-06 21:41:29 -07:00
b6830b3ac1
Merge branch 'development' into even-more-HDF5-postprocessing
2019-06-14 10:28:22 +02:00
cede188e76
enable to explicitly set the environment
...
required for running MPI processes when mpi4py is imported
2019-06-07 17:51:27 +02:00
1186bd16f5
Merge branch 'development' into even-more-HDF5-postprocessing
2019-06-04 22:39:10 +02:00
dff690611e
fixed origin bug in VTK; VTK can be float; size defaults to 1 as longest dimension
2019-06-03 13:29:30 -04:00
bf27505faa
Merge branch 'development' into geometry-class
2019-05-31 16:21:50 +02:00
37de73535d
following PEP style guide
2019-05-30 20:08:39 +02:00
4cb0ba3803
not needed anymore
2019-05-30 19:26:41 +02:00
46f0ad052e
direct support for vtk output
...
- geom_check can now handle multiple files
- microstructure index is stored as integer in vtk file
2019-05-30 15:35:45 +02:00
b00581f1be
less picky on allowed datatypes
2019-05-30 13:29:29 +02:00
931fa9d36a
standardized and cleaned
...
-write to file if given
-type casting is done in the geom class
2019-05-30 10:20:07 +02:00
f30eda0267
no need to loop over files
...
will procude the same file over and over again
2019-05-30 09:32:37 +02:00
17168525b6
use srepr in __repr__
2019-05-29 18:14:30 -06:00
6e790e845a
correct rescaling
2019-05-29 19:36:02 +02:00
669ca82ce1
formatted return message also on interactive shells
2019-05-28 09:05:10 +02:00
1f56ac6a4a
streamlining and bugfixing of geom-class
2019-05-27 22:45:34 -06:00
b69f0efbbc
improved and simplified reporting
2019-05-27 22:00:26 +02:00
615a4ab40f
keep float datatype
...
based on the assumption, that no mixed float/int data is stored
2019-05-27 09:56:15 +02:00
6e06764e2d
using (enhanced) central functionality
2019-05-27 08:38:02 +02:00
b5cec797c0
cleaned
2019-05-26 23:03:31 +02:00
c8dfba89e5
using class
...
still a very complex script
2019-05-26 22:49:05 +02:00
0da39b0c69
copy and paste error
2019-05-26 22:08:42 +02:00
0039ac9551
always add comment at beginning
...
usually, comments are related to the file history
2019-05-26 21:32:48 +02:00
7a500e77b1
not needed (DADF5 is the modern alternative)
2019-05-26 20:53:59 +02:00
07c9b8b8f0
avoiding unwanted changes
2019-05-26 20:28:19 +02:00
feb2340935
self-reporting functionality for updating
2019-05-26 17:58:54 +02:00
dcb79afc84
more user friendly errors
2019-05-26 12:03:21 +02:00
be3513d1e0
polishing.
...
python imports follow PEP8
2019-05-26 09:49:56 +02:00
9f63d768de
do not keep whitespaces
2019-05-25 13:48:38 +02:00
875643c363
same style
2019-05-25 10:24:45 +02:00
4788fc6046
making use of new class
...
@philip: 1D arrangement needed?
2019-05-25 08:37:02 +02:00
cf374a04dc
using new class
2019-05-25 08:21:00 +02:00
7b6003fb32
no need for numpy.loadtxt (not compatible with 'to' and 'of' compression
2019-05-25 08:17:51 +02:00
420abfa162
use new class
2019-05-24 22:34:27 +02:00
f20c8fcffd
easier generation and modificaton of grid geometries
...
fits better than the general ASCII table class
2019-05-24 22:30:25 +02:00
a280f9a4a2
polishing
2019-05-23 17:26:38 +02:00
f6dda99bfb
more post processing functionality
2019-05-23 08:54:20 +02:00
e7ca371b14
routines to do pointwise operations
2019-05-20 19:56:45 +02:00
118c74a268
enable materialpoint output again
...
accidently lost during a former commit
2019-05-16 22:01:12 +02:00
339b86f784
bugfix + more verbose reporting
2019-05-16 11:44:03 +02:00
9f7fa5393a
fix for scalar datasets
2019-05-16 09:31:13 +02:00
3c0c0a2cd1
more flexible in selecting data
2019-05-16 00:27:06 +02:00
c6863a6124
also consider homogenization/materialpoint results
2019-05-15 23:38:24 +02:00
4c7af713f1
added explicit method Rotation.fromBasis, which can treat real and reciprocal basis sets
2019-05-14 12:59:21 -04:00
f3c77cde87
Merge branch 'development' into MiscImprovements
2019-05-06 16:16:39 +02:00
9b0d3def1d
small changes suggested by Franz
2019-05-05 22:38:06 +02:00
39cc9e35ae
Merge branch 'development' into orientation_with_averaging
2019-05-05 22:12:09 +02:00
ebf01dee4f
store grid/size at geometry group
...
as outlined in the DAMASK results paper
2019-05-03 06:46:22 +02:00
b8bf329a74
Merge branch 'development' into MiscImprovements
2019-04-30 00:02:35 +02:00
c72518e52b
reflects current temp files
2019-04-28 07:22:12 +02:00
a5c620379b
tools to build a python wheel distribution
2019-04-26 20:54:58 +02:00
1ccc967544
enables auto include
2019-04-26 19:24:22 +02:00
1b9355327a
WIP: preparing for PIP package
2019-04-26 19:08:59 +02:00
009a47ad72
make python package independent from rest of DAMASK
...
https://packaging.python.org/guides/single-sourcing-package-version/
2019-04-25 20:05:42 +02:00
64c9a367c0
always install post processing scripts into {$DAMASK_ROOT}/bin
...
custom installation directions will be made available by more standard
approaches
2019-04-25 07:21:42 +02:00
53f6a4e030
too specific
...
- only works at MPIE
2019-04-25 06:00:56 +02:00
1330730717
inFZ needs 'proper' Rodriques--Franck vector
2019-04-19 09:04:54 +02:00
b97f10b6ff
forgotten changes in last commit + fromRandom
2019-04-19 08:17:02 +02:00
feca9fe0a0
Again changes to the return values.
...
A python function with no return value returns 'None'
2019-04-19 08:04:04 +02:00
9a43c2e4c5
fixed return values
...
- homomorph, standardize, etc. are silent in-place operations (return
None)
- homomorphed, standardized, etc. are out-of place operations that
report
2019-04-19 01:05:48 +02:00
25518df80c
fixes to quaternion class
...
- always store data as float (solves issues with truediv)
- fixed in-place multiplication and division
- consistent handling of "..ed()" functions
2019-04-19 00:44:12 +02:00
4183eeaeca
[skip ci] disorientation may return full-fledged orientation obj and aux info, added rotation.standardize(d)
2019-04-18 18:06:00 -04:00
c4f56703a4
proper definition of homomorph
2019-04-18 17:11:51 +02:00
7570b187e7
do explicit homomorphing
...
only in cases when the underlying math cannot guarantee that the
resulting quaternion follows the convention
2019-04-18 16:26:05 +02:00
e8464814ae
explicit is better than implicit
...
- if the quaternion does not follow the convention, use
"fromQuaternion(acceptHomomorph=True)"
2019-04-18 14:46:12 +02:00
71b0036323
return rotation as misorientation
2019-04-18 14:26:53 +02:00
481aac7952
misorientation calculation did not always follow convention
...
- return homomorphed quaternion to ensure that real component is > 0
(equivalent to have axis angle limited to [0, pi]
2019-04-18 13:46:58 +02:00
b746b841f7
not needed
2019-04-18 12:04:36 +02:00
6b7fd6b7ea
visualizing data from DADF5: first prototype
2019-04-18 11:58:17 +02:00
7177813710
adding data to geometry
2019-04-17 19:57:16 +02:00
fdd5b93e7c
avoid FPE exceptions
2019-04-17 15:19:41 +02:00
a6e6db0559
more stable/robust conversions
2019-04-17 12:52:48 +02:00
079e683dd1
disorientation returns Orientation, not Rotation
2019-04-17 10:48:18 +02:00
3f8c16262e
fixed import statement
...
previous form only worked in python/damask folder
2019-04-17 09:45:18 +02:00
8609eb6eb7
improved names and layout
2019-04-17 09:34:49 +02:00
c7c6627dfb
don't try to figure out the input
2019-04-17 08:49:26 +02:00
fa18200447
quaternion is now in separate module
...
avoid long modules with multiple, only loosely related classes
2019-04-17 08:46:03 +02:00
d842902a76
consistent ordering
...
- qu, om, eu, ax, ro, ho, cu
2019-04-16 21:47:29 +02:00
8eb1a35dfb
first version of a library to parse HDF5
...
- preliminarly called DADF5 (DAMASK HDF5)
- script to write (empty undeformed) geometries is also added
2019-04-13 11:25:53 +02:00
3a7408a213
averaging possible for rotations and orientations; Rodrigues 3Dvector output only at top-level; code reordering
2019-04-12 09:03:47 -04:00
3d6eb76da3
equivalentOrientations accepts scalar argument to directly return single rotation object (not single element list)
2019-04-11 19:07:41 -04:00
2190c3ef46
fixed serious disorientation bug; sorted transformation functions
2019-04-11 18:32:07 -04:00
b8285d5749
restored orientation averaging capability
2019-04-11 17:23:04 -04:00
019d1a9c5c
[skip ci] reference was wrong
2019-04-08 22:23:40 +02:00
dd51945570
checking for input errors
2019-03-28 07:25:20 +01:00
85a535b99c
is not used anymore
2019-03-07 22:35:43 +01:00
12587be595
was not used anymore
...
status bar can be used as a replacement, it does to flood log files as
extensively as the background thread
2019-03-07 20:48:09 +01:00
eada10548e
[skip ci] no blank line after progress bars
2019-02-27 08:38:06 -05:00
e88182b007
improved converte, now with test
...
still needs to figure out how +P is handled
2019-02-24 14:39:34 +01:00
56781dfa5b
fiber was never used here and will be remove anyway
...
more user friendly formatting
2019-02-24 10:32:28 +01:00
73f6cb7020
fixed datatype
2019-02-24 09:12:21 +01:00
d3ac3cc0f5
using new Orientation class
2019-02-24 08:34:20 +01:00
9dc8dff4b1
cleaning and adding compatibility layer
2019-02-23 22:35:04 +01:00
b3455c825e
transition to new orientation class
...
forward-backward conversion quite stable
2019-02-23 21:49:05 +01:00
93ae5cbd07
Merge remote-tracking branch 'origin/development' into 10-consistent-orientation-conversions-3
2019-02-22 23:05:36 +01:00
43376c39d8
addGrainID parses in quaternion
2019-02-22 11:25:39 +01:00
907f7ca560
transition to new class
2019-02-21 13:33:22 +01:00
88fc37d8a7
some more work on python3 compatible scripts
2019-02-15 16:22:52 +01:00
8b82941014
only Abaqus 2019 is available
2019-02-15 14:26:08 +01:00
c50078bafc
short version not needed any more
...
Abaqus version is year
2019-02-15 14:22:26 +01:00
608852df83
rotation paper has angle as last component
2019-02-12 10:58:38 +01:00
7da8980cc0
bugfixes: wrong shape, wrong conversion
2019-02-12 09:04:35 +01:00
336a80091f
rodrigues is 4-vector with rotation being the last component
...
established a single source of truth for length
2019-02-12 08:59:26 +01:00
97ac437686
more user friendly constructors
2019-02-12 08:14:27 +01:00
ef3fc0b58a
bugfix: wrong array indexing
...
rotation of meshgrid tuple implemented
2019-02-12 07:42:46 +01:00
4215ae3888
rotation of matrix is defined in class
2019-02-12 06:32:26 +01:00
e47c275e0c
unknown encoding caused problem (on python2?)
2019-02-12 06:18:21 +01:00
48b0307fab
using new rotation class
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cannot rotate matrices (3,3) and (3,3,3,3) at the moment
2019-02-12 00:27:13 +01:00
7ee933b79d
Rotation class
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uses (and hides) Quaternion2. Should replace Quaternion class.
Orientation class should inherit from Rotation and adds symmetry.
2019-02-11 23:50:02 +01:00
e931b716fd
conversion routines from Marc de Graefs 3D rotation repository
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Python version available on https://github.com/MarDiehl/3Drotations
2019-02-11 23:15:19 +01:00
40740b831e
reverted code removal
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was not "just commented out" but served as documentation. now easier to
see
2019-02-04 00:10:49 +01:00
9a4e9e62b6
using new rotation class
2019-02-01 20:28:51 +01:00
878331e5e9
this code was never used and is quite old
2019-02-01 19:29:19 +01:00
e6fe312f85
Corrected documented value for P (= -1!). Instead of repeating the assignment P=-1 in multiple internal functions, it might be advisable to define a class-wide parameter?
2019-02-01 14:04:55 +01:00
11a509970b
some comments
2019-02-01 10:17:20 +01:00
45d11f81b0
python cleaning
2019-01-05 10:55:28 +01:00
02ab55d4b3
python reflects content better than lib
2019-01-05 10:52:39 +01:00
Martin Diehl