Commit Graph

893 Commits

Author SHA1 Message Date
Martin Diehl 66d4ff097f removed obsolete comment 2015-03-28 11:44:17 +00:00
Haiming Zhang 72c2ead277 polishing, replace variables calculation with arrays calculation. 2015-03-27 17:58:49 +00:00
Martin Diehl 8a30021202 cleaned up core modul 2015-03-27 14:10:18 +00:00
Martin Diehl 004375cc79 removed table rewind causing problem with STDIN/STDOUT 2015-03-27 13:57:34 +00:00
Pratheek Shanthraj 1ee81e74ea more patches to get the tests running again:
- fixed increment counting in postResults to current output scheme

- corrected node coordinates calculation

- some work on restart (restart test still not running)
2015-03-26 21:19:28 +00:00
Martin Diehl 69b8e02a3a removed unwanted ASCII table data rewind causing problem for STDIN 2015-03-26 21:15:59 +00:00
Martin Diehl 643f7fe934 some comments 2015-03-26 05:04:12 +00:00
Pratheek Shanthraj fe4373a9f9 updated post processing script for MPI IO spectralOut file 2015-03-25 16:09:56 +00:00
Martin Diehl 1a3bfc7d1f updated according to new convention for ip and nodes 2015-03-24 13:52:40 +00:00
Haiming Zhang 226381586c compact the code of Yld2004-18p and Karafillis-Boyce, use array instead of components to calculate the partial derivative. 2015-03-16 16:42:26 +00:00
Martin Diehl 12cb5e56fe fixed interpretation 'spectralOut' header. Seem to have been buggy all the time, but manifested itself only after keyword change. Also added ':' after keywords to be more robust 2015-03-15 15:29:38 +00:00
Martin Diehl df2ee87a7c corrected help 2015-03-13 14:47:22 +00:00
Martin Diehl c4f639dbfb prevent crash in option parsing 2015-03-13 14:46:40 +00:00
Haiming Zhang a048b2ec15 1. Implement bbc2005 yield criterion (the residum and Jacobian); 2. bbc2005 works 2015-03-13 10:07:23 +00:00
Haiming Zhang 56cf1b53eb add Fourier interplation, anisotropic Vegter yield criterion is okay 2015-03-13 08:50:47 +00:00
Franz Roters 4b19b74d11 number of intervals is limit/delta not limit/delta -1 2015-03-13 08:39:55 +00:00
Martin Diehl def6d6b878 re-introduced determination of elem column 2015-03-12 06:20:40 +00:00
Bret Dunlap 3f340ffac9 fixed bug for table data without labels in header 2015-03-11 20:39:14 +00:00
Haiming Zhang de29524189 add Vegter criteria, planar isotropy works 2015-03-11 17:42:46 +00:00
Martin Diehl 72efc7b30c renamed resolution -> grid, dimension -> size 2015-03-11 08:55:48 +00:00
Martin Diehl 0dde6539ed renamed from 1_ip to 1_ipinitialcoord 2015-03-11 07:22:11 +00:00
Martin Diehl eb1561b528 changed postprocessing to use 1_ip instead of ip.x etc, plus corrected test files headers 2015-03-10 21:15:05 +00:00
Haiming Zhang a62fa5d5dd rewrite class Loadcase
1. add 2 dimension random load case generator
2. add Vegter load case generator(typical stress points in 2D)
2015-03-09 21:57:22 +00:00
Martin Diehl 271c9eed8b use 1_ip instead of ip.x
Old format still as fallback option to support legacy files
2015-03-09 12:52:43 +00:00
Martin Diehl 4d587b1bf9 introduced 'alias' for ip.x by first searching for 1_ip 2015-03-09 11:32:16 +00:00
Martin Diehl 96a3cb0667 added some ideas regarding the incorporation of the vegter yield criterion 2015-03-09 11:24:06 +00:00
Philip Eisenlohr 639b030c65 shortened code for opening input file list 2015-03-06 17:04:44 +00:00
Haiming Zhang 37e40fdf79 Keep consistent with the new file: example.linearODF 2015-03-06 16:21:05 +00:00
Tias Maiti 654aacf207 removed invalid options (options.packing, options.shift) 2015-03-05 21:41:53 +00:00
Haiming Zhang 5d9abc16e8 the number of grains starts with one. 2015-03-05 20:16:17 +00:00
Haiming Zhang aeb468254d missing file.close() 2015-03-05 19:12:07 +00:00
Haiming Zhang 4579a696e8 use OptionParse to parse the command-line options, add help information,
add the output of material.config file.
2015-03-05 19:01:31 +00:00
Haiming Zhang d188f35c17 use OptionParse to parse the command-line options, add help information, format the header of output file, now the output file can be used by hydribIA_linODFsampling.py directly 2015-03-05 17:04:16 +00:00
Martin Diehl f1df6cf40f copied some stcopied some scripts from the Code folder that are of interest for DAMASK 2015-03-05 10:05:00 +00:00
Chen Zhang 8c91d174fa remove some debugging print;
add meshgrid2, but stick with list comprehension since it is actually faster.
2015-03-02 16:20:47 +00:00
Tias Maiti 0077177c05 some polishing (numpy —> np, theTable —> table) 2015-03-02 05:06:29 +00:00
Chen Zhang 0d7355a49f correct help information. 2015-02-27 23:08:48 +00:00
Chen Zhang 1742725963 interpolate microstructure using Delaunay triangulation and Barycentric interpolation. 2015-02-27 22:59:09 +00:00
Haiming Zhang 9203b37fbc 1. Implement Hill1979 yield criterion (the residum and Jacobian);
2. Hill1979 works
2015-02-25 17:24:33 +00:00
Haiming Zhang 8b1846e78e 1. Implement Karafillis-Boyce yield criterion (the residum and Jacobian);
2. Karafillis-Boyce works
2015-02-24 16:46:09 +00:00
Haiming Zhang 39e17fc95a 1. add __init__() for the "Class" of each Criterion;
2. Polishing
2015-02-20 20:51:23 +00:00
Haiming Zhang a3e5da0bfd 1. Implement 2D and 3D Cazacu-Barlat yield criteria(the residum and Jacobian);
2. Both work
2015-02-20 20:34:47 +00:00
Haiming Zhang 09c357c70f 1. Fix bug of Yld2004-18p;
2. get deformation rate tensor and Lankford coefficient.
2015-02-20 14:40:24 +00:00
Martin Diehl 425251ae2b fixed bug: theTable -> table 2015-02-14 11:23:50 +00:00
Haiming Zhang 4a63aff1ed 1. Implement Yld2004-18p yield criterion(the residum and Jacobian);
2. Yld2004-18p yield criterion takes effect
2015-02-13 17:22:19 +00:00
Haiming Zhang 77cffd8040 1. fix up Banabic-Balan-Comsa 2003 (BBC2003) yield criterion;
2. add the calculation Jacobian of BBC2003; 
3. Now BBC2003 yield criterion takes effect
2015-02-12 20:48:03 +00:00
Haiming Zhang 69af205721 add the calculation of Jacobian of isotropic and anisotropic Barlat1991, shows better performance. 2015-02-12 11:04:00 +00:00
Haiming Zhang 40f1f3af23 add the calculation of Jacobian of Hill1948 and Drucker family criteria. 2015-02-11 19:06:23 +00:00
Philip Eisenlohr 53b40662ec now with executable, correct line endings, and ID tags. 2015-02-11 17:26:56 +00:00
Philip Eisenlohr d5f9f543ca Script to generate PNG image from given column (or 2D data in overall ASCIItable) with custom colormap and pixel sizes.
Supersedes “imageFromData” from “Code” repository.
2015-02-11 17:25:49 +00:00
Philip Eisenlohr 9eae665365 fixed ‘too many files open’ issue when processing a large list of input tables. 2015-02-11 17:22:47 +00:00
Haiming Zhang eed00007f9 Re-write the script:
1. replace curve_fit with leastsq, which supports the analytical Jacobian
2. specify a "class" (contains both residum and jacobian) for each criterion.
3. add the calculation of Jacobian
2015-02-11 16:49:40 +00:00
Tias Maiti 1b1ed3bbcf removed unnecessary lines 2015-02-11 06:18:08 +00:00
Martin Diehl 40a792d785 fixed bug in consistency check 2015-02-10 13:49:47 +00:00
Martin Diehl 63434c2ddb corrected error checking for correct type 2015-02-09 08:57:14 +00:00
Martin Diehl 7edd209ce4 corrected wrong name in add..., more verbose error checking for geom_from... 2015-02-07 22:22:28 +00:00
Martin Diehl 6140285ddd small changes (use ip.x instead of 1_ip). Probably we should modify postResults to use the 1_, 2_, 3_, standard notation for ip as well 2015-02-07 18:13:51 +00:00
Martin Diehl e4a94aa72b put changes on algorithm from geom_fromEuclideanDistance into addEuclideanDistance 2015-02-07 17:11:46 +00:00
Haiming Zhang f3bab46275 addthe Cazacu–Barlat (CZ) yield criterion (3D and 2D), Banabic–Balan–Comsa (BBC) Yield Criterion. 2015-02-07 16:58:57 +00:00
Haiming Zhang cdb7795956 1. Add default boundary constraint(no constraint) and initial guess to the dictionary
2. With the boundary constraint of exponential term, now non-quadratic yield criteria (isotropic Barlat 1991, anisotropic Barlar 1991, Hosford) take effect.
2015-02-07 11:07:45 +00:00
Haiming Zhang 0350b1829c 1. Replace curve_fit(see minpack.py) with curve_fit_bound(see damask/util.py), now the boundary constraint can be applied.
2. Transfer the output information into dictionary 'fittingCriteria', compact subroutine 'fit'.
2015-02-06 14:01:04 +00:00
Haiming Zhang ce09e992cc 1. Change yieldStress from 'list' to 'numpy.arrary', thanks to Martin's suggestion (3907);
2. Change '3*3' Cauchy stress tensor to '1*6', now the number of input 'xdata' for fitting is 6*Points, which is less than the former 9*Points.
2015-02-06 13:48:14 +00:00
Martin Diehl 0b3205a24b some suggestions how to simplify 2015-02-06 09:29:21 +00:00
Haiming Zhang 4f2c07063b Fix general Hosford! 2015-02-05 20:18:07 +00:00
Haiming Zhang 2b704b3905 Fix: Tresca, von Mises, Drucker, Hill 1948 criteria. 2015-02-04 16:47:35 +00:00
Haiming Zhang 2d568b49f2 add the output of standard deviation errors;
fix Hill 48 and anisotropic Barlat 1991
2015-02-04 13:04:34 +00:00
Haiming Zhang 3845c47e61 complement of 3897: add isotropic and anisotropic Barlat 1991 to the dictionary 2015-02-03 12:57:18 +00:00
Haiming Zhang bef846d294 add isotropic and anisotropic Barlat1991 yield criteria. 2015-02-03 12:54:16 +00:00
Haiming Zhang 55445af9bc 1. add initial guess and weight to the fitting (nonlinear least square regression);
2. extend the dictionary:fittingCriteria
2015-02-03 12:18:53 +00:00
Haiming Zhang cc6138ec41 rewrite "def fit()";
add format output.
2015-02-02 17:41:19 +00:00
Haiming Zhang fd75772a3f Fix the bug of calculating principal stresses. Now the fitting result is better for the criteria which expressed in principal stresses.
Thanks to Martin.
2015-02-02 16:52:28 +00:00
Martin Diehl 4772efbc45 fixed syntax error 2015-01-23 10:11:12 +00:00
Tias Maiti 2c9c04eb76 added script to replace all rows of an ASCII table by a single row containing their average 2015-01-23 00:57:10 +00:00
Martin Diehl 5be9a75cff fixed indentation 2015-01-22 09:04:01 +00:00
Martin Diehl 440263f2f0 simplified, removed deprecated synonyms 2015-01-22 09:03:18 +00:00
Martin Diehl ed6b4fe50a fixed issues when having grains and eulers 2015-01-13 16:04:49 +00:00
Martin Diehl c08f704dee added Id + a little help 2015-01-07 19:29:27 +00:00
Tias Maiti ca58216134 added missing math module import 2015-01-05 12:25:03 +00:00
Martin Diehl 3e3c13bf0b added missing math module import 2015-01-04 21:02:17 +00:00
Martin Diehl 8dea16c07f fixed wrong assignment of phase and made orientation comparison robust 2014-12-20 12:42:21 +00:00
Martin Diehl 5e8fff13d9 worked on the vtk binary out, still some problems with multicomponent datatypes 2014-12-18 21:46:38 +00:00
Martin Diehl 6604d0f8e8 polishing 2014-12-18 19:26:52 +00:00
Martin Diehl 9ac62e42df added possibility to specify number of bins to be sorted in advance to current cleared stage 2014-12-18 18:03:36 +00:00
Philip Eisenlohr 89f8ba979e Add x,y coordinates of stereographic projection of given direction (pole) in crystal frame. 2014-12-13 00:12:55 +00:00
Martin Diehl f8ce57abc8 removed aliases 'resolution' and 'dimension' for 'grid' and 'size' because some scripts did not have it anyway and the rename happened quite a while ago 2014-12-08 08:48:55 +00:00
Martin Diehl c067d0dc69 fixed wrong periodicity treatment 2014-12-05 10:35:56 +00:00
Luv Sharma 30920801aa extended for 2D, finds the bounding edges and assigns them 'physical' attribute. 2014-12-04 11:33:06 +00:00
Martin Diehl 47685ac7c4 added output of script ID do material.config 2014-12-03 10:09:47 +00:00
Martin Diehl 590106b889 added possibility to add randomly distributed second phase (index = indexGiven+1) 2014-12-02 22:22:11 +00:00
Philip Eisenlohr 3cfabe3b83 standardized script name reporting 2014-11-18 15:31:39 +00:00
Philip Eisenlohr b17dcd7652 added options ’—origin’ and ‘—geom’. Latter interprets the geom-header to derive voxel sizes. 2014-11-18 15:26:59 +00:00
Philip Eisenlohr 461a3fa979 fixed syntax error and added ‘—render’ option to immediately see output on screen 2014-11-18 15:24:09 +00:00
Philip Eisenlohr a3196669ea exchanged deprecated data array read function 2014-11-18 15:22:00 +00:00
Philip Eisenlohr 7136db1fd8 fixed syntax error: ’options.error’ —> ‘parser.error’ for error handling 2014-11-18 15:20:57 +00:00
Philip Eisenlohr 99ffa554eb added ‘1_*’ to ‘*’ as possible column label indicator 2014-11-18 15:20:10 +00:00
Philip Eisenlohr b5ef329f34 changed default position column format from .x,.y,.z to more standard 1_,2_,3_ 2014-11-18 15:18:27 +00:00
Martin Diehl b656113b11 added missing string import in marc_addUserOutput (introduced with rev 3718) and removed unwanted imports and introduce use of damask.extendableParser in some other scripts 2014-11-18 08:00:45 +00:00
Martin Diehl 409a75c964 fixed 2 small flaws in geom_fromAng, corrected stringID and stringName in all remaining files in 'pre' 2014-11-16 21:44:46 +00:00
Philip Eisenlohr 6a3546cee2 script to produce ASCIItable from geom dataset.
contains best-practice for looping over multiple input files (to avoid error caused by too many open file handles!)
2014-11-14 15:16:00 +00:00
Philip Eisenlohr deee3a175a polishing and simplifications 2014-11-14 14:53:48 +00:00
Martin Diehl 733e85f6e6 fixed bug in material.config when do not compress the data. Thanks to Noriki for figuring out 2014-11-14 13:53:55 +00:00
Martin Diehl 2d2eb4e001 using extendable option, numpy as np, etc. 2014-11-07 11:13:14 +00:00
Martin Diehl 047042ad9f using extendable option, numpy as np, etc. 2014-11-07 11:07:03 +00:00
Tias Maiti 7d6670d4cf fixed table —> theTable flaw in output finalization 2014-11-05 22:17:06 +00:00
Philip Eisenlohr 52160385a6 alternative expression to parse script filename (scriptID excluding file extension). 2014-11-05 22:05:37 +00:00
Philip Eisenlohr 9345640dfd mainly polished for “numpy as np”. added alternative expression to parse script filename (excluding file extension). 2014-11-05 22:04:59 +00:00
Philip Eisenlohr 35f8b9786e changed way to sample grid positions when placing primitive object. Should be somewhat more efficient now. 2014-11-05 22:02:40 +00:00
Philip Eisenlohr f7da804927 changed file handling to allow for serial processing of large file numbers. 2014-11-05 22:01:11 +00:00
Philip Eisenlohr f6741138e7 had badly messed up the file handling in commit 3630. STDIN did not work, files were not checked for existence… 2014-10-29 13:27:40 +00:00
Martin Diehl bdd2d55383 small bug fix for last commit 2014-10-24 06:36:01 +00:00
Philip Eisenlohr 13ba71a314 fixed bug where option.condition was altered in processing of first file, thus preventing additional files from seeing the same user input.
changed file handle setup to allow for large lists of input files.
2014-10-23 21:23:10 +00:00
Pratheek Shanthraj e779c2e1e6 specify mesh size 2014-10-21 14:42:13 +00:00
Pratheek Shanthraj 975e42b132 specify which surface(s) you want to tag 2014-10-21 13:57:17 +00:00
Luv Sharma 8dd575cdbe now making use of parser options for input arguments 2014-10-17 11:51:22 +00:00
Luv Sharma 0193578540 now appending the bounding surface information to the gmsh geometry file 2014-10-16 17:23:17 +00:00
Luv Sharma 7e0c6f420b added shebang script to make executable, some properties and few improvements. Now giving the bounding surfaces. 2014-10-16 15:53:46 +00:00
Martin Diehl dc7a4bb978 using damasks extentable option + correct version string 2014-10-16 14:56:44 +00:00
Luv Sharma ff0f619015 started to write a script for finding bounding surfaces from gmsh geo file. 2014-10-16 14:07:25 +00:00
Martin Diehl ce1f17c9cb worked on the binary vtk out needed for large datasets 2014-10-14 07:13:13 +00:00
Martin Diehl 5e16cdd14f added support for multiple entries per line 2014-10-13 13:58:26 +00:00
Martin Diehl e1530afac7 test for geom_fromTable (does not work for empty black or whitelist) 2014-10-13 09:54:01 +00:00
Martin Diehl f4de982182 svn caused trouble due to rename, again some missing files 2014-10-10 12:11:10 +00:00
Martin Diehl 46d67f63d8 added test for converter from Ricardo's files 2014-10-10 08:54:48 +00:00
Martin Diehl 57e522566a updated python style 2014-10-09 17:03:06 +00:00
Martin Diehl 47c8bfeacb commented code 2014-10-09 11:01:07 +00:00
Martin Diehl d86f091026 some small fixes, reporting still needs update 2014-10-06 12:47:52 +00:00
Martin Diehl 2836b2fb35 work in progress, extending to more criteria 2014-10-03 09:27:20 +00:00
Martin Diehl 033a275d82 a bunch of small changes. deleted compiled FFTW libraries 2014-10-02 21:27:03 +00:00
Philip Eisenlohr 23ee538dcb shortened syntax. fixed undefined file['croak'] 2014-10-02 04:49:46 +00:00
Philip Eisenlohr bfe20a3af8 added $Id$ property and LF line endings. 2014-09-29 15:57:31 +00:00
Martin Diehl f2d9d66129 improved readibility, fixed negative coordinates, improved output 2014-09-29 15:55:17 +00:00
Martin Diehl ff475f1459 first draft of a constraint voronoi tessellation to match grain distribution 2014-09-29 10:19:49 +00:00
Philip Eisenlohr 496c3d4bc8 added line breaks identifier and $Id$ flag 2014-09-25 21:54:42 +00:00
Philip Eisenlohr b85797c109 significant speed improvement for large grids.
polished messages and fixed error reporting bug.
2014-09-24 23:47:52 +00:00
Tias Maiti 78ab14806f fixed bug in parser option type definition 2014-09-21 17:59:06 +00:00
Tias Maiti 14530b0a76 fixed bug 'the table' instead of 'table' 2014-09-19 15:24:59 +00:00
Martin Diehl d07a098724 fixed wrong help introduced with last change on 3Dvisualize 2014-09-19 09:50:26 +00:00
Martin Diehl a7d831de06 forgot to import python module 2014-09-15 10:07:52 +00:00
Martin Diehl 5657119b11 updated post processing test: rotateData is doing something, corrected addDeviator defauls 2014-09-12 14:49:26 +00:00
Martin Diehl f2c4db0bb5 correcting help and default, some comments 2014-09-12 14:46:12 +00:00
Martin Diehl afb9a2186b removed explicit default setting: type='string' and action='store' 2014-09-12 14:14:55 +00:00
Martin Diehl 9ba7851c14 fixed bug in calculation of spherical part. Variables in python functions are intent(inout) in Fortran language! 2014-09-12 13:13:05 +00:00
Martin Diehl 5f986f3d54 updated to contain latest python improvements 2014-09-10 16:14:37 +00:00
Philip Eisenlohr 5a159dcdfa script to add scalar data and/or RGB color tuples to rectilinear VTK file (*.vtr) 2014-09-05 20:28:39 +00:00
Tias Maiti e286cf4c74 fixed bug "theTable" instead of "table" 2014-09-03 14:53:12 +00:00
Tias Maiti b566eed5a8 fixed error in last commit 2014-08-28 18:50:48 +00:00
Tias Maiti 5d96f62b44 fixed bug "theTable" instead of "table" 2014-08-28 17:37:27 +00:00
Martin Diehl 6cdcdecdfa post processing scripts are working again.
@Philip: definining one offset for shiftData and one factor for scaleData for tensor/vector/special>1 seems to be more reasonable than per component
2014-08-25 21:13:39 +00:00
Martin Diehl d93c40a3dd fixed small bug ('theTable' instead of 'table') and simplified 2014-08-25 12:53:11 +00:00
Martin Diehl 1ba7cbb046 fixed small bug ('theTable' instead of 'table') and simplified 2014-08-25 12:39:12 +00:00