188002f16e
more LF, Id, and executable status changes
2014-04-01 16:58:54 +00:00
c254f87814
now assuming periodic microstructures (was not fully correct before, assuming non-periodicity)
2014-04-01 16:43:39 +00:00
16743f8631
explicitly state unbuffered ASCIIoutput
2014-03-28 18:15:37 +00:00
f19955c84a
added options to specify the columns for the grain IDs and segments
...
improved error handling
2014-03-12 14:26:44 +00:00
0363b1fb04
updated reporting (according to addCauchy)
2014-03-10 14:01:39 +00:00
e10f8f1b5e
corrected typo
2014-03-04 16:43:22 +00:00
943349fdbb
bunch of new scripts:
...
gwyddion_filter tries to smoothen out Gwyddion data sets.
vtk_fromGwyddion produces vtk mesh from Gwyddion data set.
geom_addPrimitive allows to add box, cylinder, or ellipsoidal blobs to geom file.
2014-03-04 03:34:34 +00:00
6fd8407d6e
moved "predefined" to colormap init
...
cleaned interpolate to not change color model
fixed color range cropping issue
2014-02-28 16:09:01 +00:00
63569b19b6
added use of "defaultdict" from collections
2014-02-28 15:56:28 +00:00
fdbde250dc
deleted obsolete table.data_rewind to be pipe-safe
2014-02-28 15:55:48 +00:00
27c83f60a6
fixed typo
2014-02-26 15:05:34 +00:00
7f08c976c3
skip file if mandatory column not found in ASCIItable
2014-02-26 14:56:06 +00:00
98a8b47a09
can now read legacy VTK files with unstructured grid data
2014-02-24 19:23:08 +00:00
9d402022aa
fixed small bug when using renumber option
2014-02-15 10:37:50 +00:00
371a027de9
added option '--renumber' to geom_rescale and geom_grainGrowth to renumber microstructures from 1 to N (without gaps), off by default.
...
added metavar information to some scripts
2014-02-14 13:17:29 +00:00
a659d071a9
added '--degrees' option to indicate Euler angles unit
2014-02-10 18:01:21 +00:00
85e4896478
"--degrees" option to specify Euler angles in degrees (instead of radians)
2014-02-09 20:36:42 +00:00
ccb950f3d8
checked Unix command piping conformity -- seems to now work:
...
seeds_fromRandom |
geom_fromVoronoiTessellation |
geom_grainGrowth |
geom_unpack |
geom_pack
However, grainGrowth functionality seems broken...
2014-02-03 23:44:29 +00:00
f66c0727d0
fixed wrong type for arguments introduced last time (must be string to have multiples)
2014-02-03 20:23:49 +00:00
7a9fa061de
added --compress option: for ang files filtered to have single orientation in grain (OIM filter), microstructure and texture in material.config are compressed
2014-01-30 12:00:20 +00:00
3c2af8e7a6
fixed dropped file handle when flushing closed output...
2014-01-29 21:16:44 +00:00
24d7f55f55
check whether output is already stopped (in command piping for instance)
2014-01-29 21:13:36 +00:00
cd18ec2abf
removed unneccesary table.data_rewind, which breaks command piping
2014-01-29 21:03:56 +00:00
ee99216edc
polishing compile_CoreModule, bug fix for Makefile
2014-01-28 07:34:13 +00:00
1bd456aa22
corrected options.error --> parser.error
2014-01-27 14:30:37 +00:00
a1cfc85d74
produce VTK unstructured grid with voxels around all points given in an ASCIItable.
2014-01-27 14:10:29 +00:00
13fed38a2f
add scalar and RGB tuples from ASCIItable to existing VTK voxel cloud (*.vtu)
2014-01-27 14:05:03 +00:00
c9c6588f7c
renamed seeds file related scripts in a (hopefully) consistent manner
2014-01-23 20:48:33 +00:00
eda9076157
use existing geom file and produce seed points from each voxel (filtering possible)
2014-01-23 20:43:42 +00:00
8b4af554ba
added verbosity on help messages
2014-01-20 14:41:56 +00:00
649b8b91fe
fixed reporting of arguments
2014-01-15 15:10:13 +00:00
db18b3c77f
added missing script arguments in documentation part of the header
2014-01-14 10:53:45 +00:00
0f101c8dbf
adopted to improved HDF5 format
2014-01-13 16:22:01 +00:00
aab0208c65
more modifications, only configure needs modifications
2014-01-12 17:29:00 +00:00
a614e76968
first post processing script for HDF5 output
2014-01-07 20:42:51 +00:00
4f30a6e05b
now compatible with new table.data_readArray method
2013-12-31 21:06:32 +00:00
2f1db8f69a
introduced delimiter option (default = tab) for ascii table output, use space for geometry files
2013-12-17 08:16:29 +00:00
e20ffb379d
changed numpy.readtxt logic from "data_asArray" returning a copy to inplace "data_readArray" now directly storing into self.data
2013-12-14 03:51:22 +00:00
600389ac44
new script to sort ASCIItable according to (multiple) columns
2013-12-14 03:48:50 +00:00
37046cd2ea
changed Fortran standard to 2008
2013-12-12 22:30:22 +00:00
0f8790c148
clarified help string
2013-12-12 08:48:57 +00:00
10c8a1a3ce
corrected typo in usage hint
2013-12-12 02:35:01 +00:00
894776ca67
fixed stupid bug addressing a dict by dict{key} instead of dict[key]
2013-12-11 14:30:27 +00:00
44b3687e7c
added option to invert output data range (1.0 -- 0.0 instead of 0.0 -- 1.0)
2013-12-10 00:27:22 +00:00
e4cea31a9d
small bug fix: options.error --> parser.error
2013-12-09 15:58:35 +00:00
e2d4cc8b3d
fixed former nonsense definition of lab frame direction
2013-12-09 15:57:21 +00:00
26690859bb
deal more gracefully with problematic user input.
2013-12-09 15:54:47 +00:00
7fb1a3130a
now VTK 6 compatible
2013-12-09 15:41:29 +00:00
c7ac903dc7
fixed missing comma in script list...
2013-12-09 15:37:36 +00:00
090fca8683
deleted left-over debug statement
2013-11-26 20:24:40 +00:00
d498eca242
deleted left-over debug statement
2013-11-26 20:22:52 +00:00
b63d2eafe8
new scripts for:
...
-generating vtk point cloud from x,y,z ASCIItable data
-adding scalar values and color tuples from ASCIItable to vtk point cloud
-permuting data in ASCIItable columns (used to shuffle ordered grain indices)
2013-11-26 20:19:27 +00:00
a45c7dbb62
new ASCIItable scripts to add
...
- quaternion and/or Euler representation of lattice orientation (given in rotation matrix, etc.)
- RGB color code of crystal direction in laboratory frame (matching closely the TSL-OIM scheme of inverse pole figures).
2013-11-25 19:11:02 +00:00
0337b4f319
added script to produce VTK point cloud from seed file coordinates
2013-11-20 17:33:05 +00:00
feaccae652
set threshold for values treated as zero to 1.e-12 (was 1.e-15) to avoid flip in strain direction
2013-11-19 19:39:14 +00:00
e1e76cb257
fixed bug in OIMang_hex2cub.py, added test for correct number of microstructures (should be equal to header info)
2013-11-14 17:37:42 +00:00
d2cbca35b2
fixed syntax error in last commit
2013-11-13 12:51:48 +00:00
9b7007b937
added accidently deleted output of texturei again
2013-11-13 12:46:20 +00:00
103ae3cd0d
introduced on the fly copying for 2D microstructures in 3 dimension
2013-11-12 17:04:36 +00:00
fc8811c07d
switched to faster algorithm and removed buggy multi-threading
2013-11-11 13:00:31 +00:00
9ac8846e41
compiling with hdf5 is now working for DAMASK (if HDF5=ON) and for playground example in private
2013-11-07 12:52:36 +00:00
463ecfd296
switched to damask.ASCIItable parsing, now aware of synonyms in geometry header, and speed-up by some orders of magnitude due to scipy.ndimage.filters use...
2013-11-04 14:12:10 +00:00
1ff98296b3
added output of default values, still does not run for my geometry
2013-10-25 11:58:03 +00:00
5c1c0028e0
throw error if RCB segment list is not properly connected, i.e., complain about "dead ends" along the segment chain.
2013-10-24 18:55:16 +00:00
705d23a5ed
fixed bug for non-present "microstructure" info in header.
2013-10-15 12:36:52 +00:00
47577e3d11
introduced synonym "grains" for deprecated "grains" to ensure backward compatibility
2013-10-15 09:50:20 +00:00
6f467c0789
added "-fPIC" flag to make sure (independent of local f2py settings) that position independent code will be generated for the shared "code" object in DAMASK's python lib
2013-09-23 19:07:12 +00:00
9280b0a4e2
fixed bug where configuration wrote floating point numbers for grain IDs and texture IDs.
2013-09-23 18:35:30 +00:00
1915215c6f
commented out not working use of vtk class
2013-09-20 11:27:11 +00:00
3eb8aa1362
checked for python3 compatibility:
...
use "print('foo')" instead of "print 'foo'"
and "except(error) as e" instead of "except error,e"
2013-09-14 10:52:02 +00:00
a17b85cba8
deleted wrong colormap script, was there twice. correct one (modified recently by Philip) is called perceptualUniformColormap
2013-09-11 08:15:05 +00:00
022696c8f3
fixed output to screen
2013-09-11 07:45:42 +00:00
538a471246
updated $Id$ handling.
...
added (colored) my script's name reporting.
2013-09-09 14:12:00 +00:00
ec6587e7f5
corrected help message
2013-09-09 14:11:16 +00:00
f02ee16b3d
fixed missing comma in "pre" symlinking list.
2013-09-09 14:09:38 +00:00
b3463b2ed6
added intel openmp library to linking list. (-liomp5 was necessary when using IMKL...)
2013-09-09 14:08:44 +00:00
7bbee3fe60
write size as exponential not float, otherwise small numbers get rounded (to zero)
2013-08-21 15:25:27 +00:00
4f7cd76b29
renamed texture_rotation into texture_transformation
...
changed keyword for material.config to axes in line with geom_fromAng.py
former keyword rotation is still recognized for compatibility
2013-07-24 11:09:39 +00:00
d2ccc06aee
added line break between rotation and euler angle information for correct parsing of config file
2013-07-23 14:33:30 +00:00
c8cc397bf4
small bug fix
2013-07-23 12:40:26 +00:00
26df077c2a
translating scalar data that contain vector components to vector data
2013-07-22 08:24:04 +00:00
69b3359047
forgot in last commit
2013-07-18 13:31:40 +00:00
2201a73a46
added (?correct and working?) rotation for conversion from ANG and updated bold verbosity of all other scripts
2013-07-18 13:28:54 +00:00
a39005ef1c
added possibility to specify formula with array return type
...
added support for numpy
2013-07-16 21:48:23 +00:00
7d5f1270d5
fixed nasty bug that prevented proper grid rescaling
2013-07-16 21:11:44 +00:00
cb09c17fa2
simplified $Id treatment.
...
now reports own name in bold during runtime.
2013-07-10 09:15:42 +00:00
31e0469b34
changed key "grains" to "microstructures" to be consistent with .geom description later.
2013-07-10 09:14:53 +00:00
f75604c235
fixed bug in output of origin (reported size instead)
2013-07-10 09:13:21 +00:00
fafa69b846
added possibility to have microstructure indices for seed points. Hence, multiple seed points can belong to the same final grain.
2013-07-10 09:12:00 +00:00
0fa9f7dc22
can now show data for tables lacking column labels (use option --nolabels)
2013-07-08 11:56:16 +00:00
930e605afc
bug fixes and more optimizations
2013-07-03 00:48:21 +00:00
34ef7b0f34
now fully anisotropic grain growth possible by setting up the function "interfacialEnergy"
2013-07-02 04:32:32 +00:00
5ff8a7067e
fixed bug and re-reverted to faster version. added python multiprocessing functionality. polishing and renaming
2013-07-01 17:15:24 +00:00
89cea68bc5
now using ASCIItable object and numpy array.repeat --> about 50x faster for large geoms (i.e. several mio voxels).
2013-06-30 19:11:16 +00:00
39758f5c53
removed twoD option remnants
2013-06-30 19:09:01 +00:00
1f891c544d
now using ASCIItable object (much faster file writing).
...
(temporarily) switched back to rev2496 logic...
changed to diffusion distance as command line argument (instead of taking sqrt(time))
2013-06-30 13:51:21 +00:00
dd3d53e238
simplified grid/size synonyms treatment
2013-06-30 13:47:01 +00:00
21c4447955
polishing and code unifications
2013-06-30 12:35:04 +00:00
24fc14c2f3
fixed small syntax error introduced in last commit...
2013-06-30 00:46:52 +00:00
77aa1c27b0
now based on damask.ASCIItable object
...
continue with next if one file is broken (used to stop!)
packing of already packed works now
overall speed improvement
standard unpacked output is 2D: use -1/--onedimensional for linear list
2013-06-30 00:39:48 +00:00
fcc2736431
now based on damask.ASCIItable object
...
continue with next if one file is broken (used to stop!)
improved index substitution and adopted more numpy functions --> notably faster
2013-06-30 00:37:03 +00:00
f204c38d4d
now based on damask.ASCIItable object
...
continue with next if one file is broken (used to stop!)
switched to numpy functions for geom reshaping and writing --> 10x faster
2013-06-30 00:34:16 +00:00
7d6035dcfa
now based on damask.ASCIItable object
...
continue with next if one file is broken (used to stop!)
2013-06-30 00:31:44 +00:00
da1b4ff05b
now based on damask.ASCIItable object
...
switched to numpy functions for grid generation --> about 20x faster.
2013-06-30 00:30:06 +00:00
b2c8a7e345
removed tabs (and extended tab-awareness of pre-commit hook to python scripts)
2013-06-29 21:14:58 +00:00
e3a1e70542
started to use vtk class for writing results
2013-06-27 18:21:20 +00:00
4537720895
faster version for large number of grains. now performing diffusion on a small window around each grain where window around each grain is obtained cheaply
2013-06-27 16:57:14 +00:00
034a6bc926
grid dimension can be changed by factor ("2x"), or left alone with number <= 0.
...
now understands packed geom structure.
2013-06-27 15:35:49 +00:00
5f347648e1
now understands packed geom structure
2013-06-27 15:34:37 +00:00
76171eec15
added possibility for factors---indicated by "x" at the end---and left-alone condition now comprises "0" as well as "negative numbers. understands packed structures, too.
2013-06-27 12:58:12 +00:00
13227dff0f
corrected calculation of origin
2013-06-22 14:13:29 +00:00
8b5ba9f8f0
now understands packed geom-files (much faster processing...)
2013-06-21 21:19:14 +00:00
4cf2e75dc1
justification of numbers done with space instead of "0"s
2013-06-21 21:18:10 +00:00
e53c67f0e0
added black list for immutable microstructures.
...
now able to parse packed geom-files.
2013-06-21 21:17:03 +00:00
3b4573301c
removed now obsolete Moore neighborhood array
2013-06-21 19:10:10 +00:00
5d15f68914
added help description.
...
fixed bug for grain index (+1).
renamed some variables and added a few comments.
2013-06-21 19:08:20 +00:00
2e8756b724
faster version of smoother using the scipy gaussian filter to get the diffused microstructure and vectorized sharpening of the diffused microstructure
2013-06-21 16:59:49 +00:00
45951e27c5
script to smooth out interface roughness in a (polycrystal) geom
2013-06-20 19:45:25 +00:00
0740845d81
allow coordinates to not be in consecutive columns
...
keep origin of original data set
2013-06-20 07:36:35 +00:00
e6499e1a39
renamed script in order to distinguish from "add" scripts that act on ascii tables
2013-06-13 09:05:30 +00:00
920195809c
fixed bug in auto determination of size and grid
2013-06-11 10:11:14 +00:00
becacb675a
linear reconstruction no longer needed for odd resolution
2013-06-05 14:05:11 +00:00
e635b06270
last polishing on preprocessing scripts, documentation and scripts are all up to date.
...
added addSchmidfactors to post processing scripts
2013-06-04 12:56:57 +00:00
32a16f9745
wildcard matching for column headings, e.g. "[159]_p" to extract only the diagonal elements (scalars) of stress, or "[1-9]_p" to extract all nine values.
...
fixed VTK file format problem where double precision floats were incorrectly interpreted because they were announced as "float" (now "double").
2013-05-29 10:24:00 +00:00
a21dd816c7
init reporting of constitutive_*.f90 had less/to much spaces, renamed label to LABEL because it is a parameter.
...
removed debug output of geom_fromEuclideanDistance.py
2013-05-28 17:31:55 +00:00
837574278e
removed (now) unused function for reading of configFile
2013-05-28 14:47:50 +00:00
10a32dc17b
use predefined maps in damask.Colormap class; no need for a colorMap config file anymore
2013-05-28 14:18:21 +00:00
8fd590d7bd
added red--blue map
2013-05-24 07:41:44 +00:00
19dc95a915
now able to choose vector that is used for warpvector filter via option.dispLabel
2013-05-22 21:23:01 +00:00
75ee54146b
deleted unused function
2013-05-22 21:20:00 +00:00
b3a90a8a3b
last changes on preprocessing tools, only documentation needs to be done
2013-05-17 16:44:03 +00:00
17b81fda7c
still improving preprocessing scripts
2013-05-15 17:23:21 +00:00
53348db000
tested the modified scripts, all scripts generating geometry now named geom_from...
2013-05-15 16:02:38 +00:00
0b4a5cfa9b
geom_check is now using vtk class, other scripts stop execution in case of invalid grid or size
2013-05-14 21:09:37 +00:00
9093cf2072
polishing, unifying,simplifying
2013-05-14 17:51:53 +00:00
2acd737859
polishing, unifying,simplifying
2013-05-14 17:19:36 +00:00
563e74c832
now also using numpy
2013-05-14 17:00:41 +00:00
b2c50124b5
more improvements on structure, comments and header generation of pre processing tools
2013-05-13 13:10:31 +00:00
52af9aaabf
made spectral preprocessing more verbose (now reporting changes on header) and aware of new keywords, added coding information below shebang
2013-05-13 11:27:59 +00:00
deb2bd7dca
added option to only process ip or node based geometry/data
2013-05-13 10:06:40 +00:00
7f7cd0732d
improved visualization of script results
2013-05-13 09:36:19 +00:00
193c77f526
corrected prediction of computation time
2013-05-09 11:33:40 +00:00
ed1674ee1c
changed default value of eulerangles label
2013-05-09 11:32:34 +00:00
2d4cb6d128
first point on slice always starts at (0,0)
...
added option to visualize results
2013-05-08 15:59:51 +00:00
bd33169118
mistakenly committed table2ang in rev 2380, instead of vtk2ang. reverted changes in table2ang
2013-05-08 15:58:17 +00:00
ed9413a008
added simple output about progress
2013-05-07 14:32:38 +00:00
543cbf3a14
first point on slice always starts at (0,0)
2013-05-07 13:18:26 +00:00
c7f987a3c1
"unitlength" parameter, which determines the physical size of the mesh, now available as a global mesh variable "mesh_unitlength" and written to the .mesh file during init.
...
Hence, it is available to the marc_deformedGeometry.py script via "mesh_init_postprocessing()" and "mesh_get_unitlength()", so no need for setting the scaling of the displacement vectors explicitly through an option; now displacements and nodal positions are always consistent
2013-05-07 13:06:29 +00:00
9656d06fcc
- all length in nag file in micrometer
...
- "size" option replaced by "scale": uniform scaling of all length
- default normal in negative z-direction
- more output in verbose mode
- ang file numbering starts with 1
- positions in ang file in TSL, not lab frame
2013-05-07 12:57:34 +00:00
278198121d
only import vtk classes that were used
2013-05-06 16:55:44 +00:00
2371bd9f57
correct extension ".py" for "table2ang" and "vtk2ang"
2013-05-06 16:43:05 +00:00
f5482ffbf4
new script that generates ang files for slices through vtk data set
2013-05-06 16:37:54 +00:00
43647fc5e6
use datatype double instead of float for ouputs
2013-04-30 14:45:29 +00:00
12ca2c1931
added scaling option for displacements
2013-04-29 16:02:30 +00:00
9afaa9f4d0
set "line breaks" and "keywords" property
2013-04-29 09:24:07 +00:00
fbb8353bba
check if data set attribute is already present
2013-04-29 09:23:16 +00:00
cc72c0b17b
added two new scripts:
...
"marc_extractData" is a simple variant of the "postResult" script that extracts all data from a macro *.t16 file (quadratic elements not yet supported) and writes it into an asciitable
"addDataToGeometry" searches for corresponding *.txt and *.vtk file in a given directory and adds the data from the *.txt file as SCALARS to the *.vtk file
first script needed an additional function in mesh that returns the corresponding node of a given ip in a specific element
2013-04-28 20:56:17 +00:00
a003d14824
grid and size for vicinityOffset, small changes for other scripts
2013-04-25 16:51:32 +00:00
5d8664e230
updated to new keywords + more verbosity
2013-04-25 15:53:41 +00:00
7cbf107751
removed misplaced new line statement
2013-04-24 11:07:05 +00:00
650b7ef4ac
added python script that produces vtk files with the (node based and ip based) deformed mesh from marc output file
2013-04-23 18:30:56 +00:00
aa07656a90
exchanged final two occurrences of "grains" to "microstructures"
2013-04-18 13:53:13 +00:00
06c872d404
added libs.f90 to core module compilation, didn't work because kdtree2 wasn't there
2013-04-17 17:39:52 +00:00
b572c71db0
fixed small bug in error reporting (missing column head complaint was broken...)
2013-04-16 20:10:17 +00:00
d971a32516
changed keywords, now also printing out altered size/grid/microstructures information
2013-04-16 18:00:14 +00:00
2ff0f1b93e
keywords update from resolution/dimension to grid/size
2013-04-12 14:13:32 +00:00
b4f67248a5
deleted two simple scripts used for debugging but with almost no use any more
2013-04-12 13:22:15 +00:00
7bcf1d6072
added ID information of creator script to header, changed keywords (resolution->grid, dimension->size)
2013-04-12 12:48:39 +00:00
4314ab236e
added ID information of creator script to header
2013-04-12 11:15:17 +00:00
6f0308844f
geom packing/unpacking won't throw away unknown header information any more (might contain comments)
2013-04-12 10:47:44 +00:00
0b1033d63a
switched to new keywords "grid" and "size", still reads the old "resolution" and "dimension" but writes the new ones
2013-04-12 10:27:05 +00:00
770712529d
one more bug fix related to scaling
2013-03-26 16:16:59 +00:00
ccef9d4f73
fixed scaling option
2013-03-26 14:18:29 +00:00
5b96c1d62a
scaling of deformation gradient fluctuations now possible in x,y,z independently (give array).
2013-03-22 15:09:55 +00:00
cd86a80c2b
corrected handling of default value and cases where the deformation gradient is not f
2013-03-19 18:22:14 +00:00
43ec1d2051
added output of perceptual unfiform colormaps to GOM (DIC Aramis) format, deleted some old files in the documentation folder
2013-03-19 15:19:46 +00:00
757c3e5a04
fixed bug in averageDown and updated test
2013-03-13 16:23:02 +00:00
010d4c6e26
added script to make 27 periodic copies (3 in each dimension)
2013-03-11 13:40:30 +00:00
8a66693001
added script to convert data used by R.A. Lebensohn to spectral solver (geom, material.config) format
2013-03-05 16:31:17 +00:00
0d7f1e8623
killed "margin" option, now same as all others: resolution and dimension in x and y.
...
can be non-square grid.
2013-02-27 18:43:53 +00:00
565c532546
fixed bugs (grain index start, alpha orientation for elliptic osteons).
...
added option to rotate osteon relative to periodic box.
2013-02-27 10:56:30 +00:00
1cc990c7ac
osteon geom and config generator
2013-02-25 17:12:13 +00:00
831ad6d9c8
added leading zeros to names of microstructures and phases, spaces caused problems during initialization
2013-02-20 14:50:01 +00:00
7461e13c1e
relocated spectral_quit() into driver code.
...
added (dummy) core_quit() for Python damask module.
2013-02-19 14:54:34 +00:00
30024af6c2
polished string concatenations
2013-02-14 21:33:11 +00:00
d715ec769b
removed debug statements from symlink_Code.py, added autodetection for fortran compiler and disabled compiling on default
2013-02-13 18:45:49 +00:00
a90f15a3d3
corrected usage of "append" (which does not copy list items but only creates references)
2013-02-13 16:00:02 +00:00
cc9eb685fe
fixed wrong setting of coordinates in spectral solvers and removed old python scripts for setup of code and processing
2013-02-05 12:31:44 +00:00
a7e7a857c3
readjusted color values to work nicely with Msh colorspace (as in ParaView)
2013-02-02 20:17:54 +00:00
ac562f4b8b
changed internal color mapping to damask.Colormap class
2013-02-02 15:12:43 +00:00
b0263a8aab
added possibility to parse options for setup_code.sh and setup_processing.sh + other improvements in setup functionality
2013-02-01 12:21:56 +00:00
e74b5da19a
changed all remaining routines to fortran-fast arrays (geometry reconstruction etc.)
...
changed all remaining routines in f2py to more clever determination of array size (requires f2py >= 2.0)
enabled 3D visualize to work with odd resolution by switching to linear reconstruction
PLEASE NOTE: Redefinition of routines for f2py might cause trouble -> DELETE DAMASK_ROOT/lib/damask/core.so in this case
further changes: added pure statement where possible, polished, unified use of "Q" for "Quaternion" and reordered math to have similar routines together
2013-01-31 16:28:08 +00:00
55957dd99e
compile_CoreModule.py split seperately from the previous setup_processing.py
2013-01-29 15:33:20 +00:00
d713ef79d0
a simple shell script that runs compile_CoreModule.py and symLink_Processing.py in the said order
2013-01-29 15:32:43 +00:00
bd1f8044fb
symLink_Processing.py split seperately from the previous setup_processing.py
2013-01-29 15:31:57 +00:00
963ff0c3ae
added support for tetrahedron element with 4 integration points (Marc ID 127)
2013-01-28 16:25:43 +00:00
e691ff1ea1
updated setup_processing and corrected descriptions for new scripts
2013-01-22 09:56:36 +00:00
a4abebfcbb
some potentially useful postprocessing scripts
2013-01-21 23:15:23 +00:00
4af855c755
added perceptualUniformColorMap.py to the list of post-processing files
2013-01-18 17:39:09 +00:00
5676330e93
parsing options and file handling for perceptually linear diverging and sequential colormaps
2013-01-18 17:15:30 +00:00
e51779579e
removed (unsupported) "--geom" option.
2013-01-18 13:01:43 +00:00
c8aaf8f6d4
added $id flags and specified line ending types when missing.
...
setup script missed ".py" extension for geom_euclideanDistance.
2013-01-18 12:59:26 +00:00
0e93d51fed
adopted same algorithm as in addEuclideanDistance
2013-01-18 11:42:27 +00:00
096204cd79
corrected missing file renaming of output
2013-01-18 11:39:53 +00:00
7ac7d1a657
new tool for creation of colormaps, now using proper classes
2013-01-15 18:24:10 +00:00
cd5197556b
sequential colormapping with options for desired color and type(increasing or decreasing) is now working
2013-01-04 19:50:39 +00:00
820b8eb2c1
put colormap related functions into library, renamed and added scripts for creation of colormaps
2013-01-04 13:57:36 +00:00
6ab79d5593
added options for parsing and the colormap. Customized colormap is written out as an xml file importable into paraview.
2013-01-04 12:04:05 +00:00
3242361c91
added a minor change to the string expression and the for loop.
2013-01-04 12:01:34 +00:00
7157e8f03c
changed some of the color-space conversion formulae.
2013-01-04 12:00:10 +00:00
a69aaa1315
Use scipy euclidean distance function instead of FMM (runs without skfmm
...
module installed)
2012-12-19 14:50:45 +00:00
260e4191a0
replaced tabs by spaces
2012-12-13 18:15:10 +00:00
dfb791bcaf
only complain about missing Mentat release if needed...
2012-12-12 08:33:42 +00:00
34645a7222
write warning about missing Mentat release to stderr instead of stdout
2012-12-12 08:21:59 +00:00
93d822aaa1
symmetric colormap always with pure white in the middle
2012-12-11 16:50:34 +00:00
726d1173e5
polishing
2012-12-07 17:46:28 +00:00
c4ef2e5925
bug fixes
2012-12-07 17:41:50 +00:00
eaf7072bc1
Vectorized checking of neighbourhood for unique microstructure
...
(faster)
M addEuclideanDistance.py
2012-12-07 10:50:34 +00:00
89867a198c
forgot to adopt addEuclideanDistance into the auto-setup...
2012-12-06 21:51:30 +00:00
a37250eef4
script to add the Euclidean distance map from boundaries, triple lines, and quadruple points to an ASCIItable of a regular grid.
...
requires numpy, scipy, and skfmm...
2012-12-06 21:49:49 +00:00
2d4cf7da74
conditions can handle string data.
...
use "#s#label#" format to indicate that column headed by "label" contains strings (not floats)...
2012-12-03 14:29:21 +00:00
7d96bb7ce8
Add column(s) containing directional stiffness based on given cubic stiffness values C11, C12, and C44 (in consecutive columns)
2012-12-03 13:10:16 +00:00
faa5f3c459
corrected severe bug in (non-logarithmic) strain calculations..!
2012-11-30 15:02:25 +00:00
72159e867c
fixed buggy file handling for multiple input files
2012-11-30 11:03:53 +00:00
74f62c891d
slightly safer file closing strategy
2012-11-30 08:38:52 +00:00
9fb838fd28
changed switch from "sequential" to "column"
2012-11-30 08:29:34 +00:00
1bd6bcfe3d
script to list info, labels, and/or data of an ASCIItable
2012-11-30 08:26:13 +00:00
e498719dcf
forgot to add to last commit
2012-11-29 21:57:07 +00:00
f63bb747c1
script to calculate the euclidean distance map (shortest distance to a grain boundary) of a given geom description using fast marching method (O(N logN) ops). grain boundary extracted using FD stencil.
2012-11-29 21:53:57 +00:00
f446d4d87e
added wildcard matching ( "?", "*", "[(!)sequence_of_characters]" ) for ASCII table labels
2012-11-29 10:42:13 +00:00
05507a6240
removed opening of unused _tmp file
2012-11-27 17:59:56 +00:00
255af58434
post processing script to add eigenvalues and eigenvectors to tensorial data in ASCII tables.
2012-11-23 21:49:30 +00:00
78c22d8449
corrected label in case of divergence of tensor, now using correct notation for scalar: divFFT(data) instead of 1_divFFT(data)
2012-11-21 10:31:52 +00:00
b5945ced5e
changed counting of rows from pythonic (starting at 0) to human way (starting at 1)
2012-11-20 10:27:09 +00:00
b988caa6ba
added script to add deviatoric and hydrostatic part of a tensor to ASCII table
2012-11-14 10:46:51 +00:00
c3926efd93
introduced logic to use gfortran as default if ifort is not found
2012-11-13 19:12:00 +00:00
1df9be233d
changed default threshold to 0.0
2012-11-08 17:08:41 +00:00
682a98b704
forgot to alter name of 'geom_fromAng' in setup script...
2012-11-08 16:29:26 +00:00
025d6c9048
renamed script to new convention
...
aligned output behavior to that of fromVoronoiTessellation, i.e., standard output is geom, --config gives associated material.config stud
2012-11-08 15:44:51 +00:00
af2aa8500d
added option to specify crystallite index
2012-11-08 15:43:38 +00:00
c4c27860b2
renamed script
...
updated to recent standard in io processing
introduced "primitive" bicontinuous structure in addition to "diamond" and "gyroid"
2012-11-07 16:52:10 +00:00
7cf2024be3
fixed buggy parameter checking
2012-11-07 16:51:17 +00:00
e11d107956
fixed reporting to STDOUT/STDERR
...
fixed buggy parameter checking
2012-11-07 16:49:47 +00:00
cfc8823328
missed those three in former commit...
2012-11-05 21:28:01 +00:00
1bd4262cfb
renaming of (loosely related) "spectral" scripts to (more tightly related) "geom" versions.
2012-11-05 21:19:12 +00:00
1fc59107fa
removed debug statement in averageDown.py, deleted obsolete spectral_iterationCount.py (new solver will report statistics anyway and most probably the current count does not work as the screen output was modified)
2012-10-31 10:06:11 +00:00
afaf1f4e8c
made errors report to STDERR.
...
maxMicrostructure remains silent if not present.
2012-10-30 16:32:00 +00:00
f2229883b5
exchanged "maxGrainCount" for "maxMicrostructure", since this is what it really means...
2012-10-30 16:15:10 +00:00
ff164c9209
changed packing syntax from "N copies of x" to "N of x" (now consistent with IO.f90)
2012-10-30 15:53:46 +00:00
2d36d52cf7
changed packing syntax from "N copies of x" to "N of x" (now consistent with geomPack and IO.f90)
2012-10-30 15:47:11 +00:00
b9aa50c59a
improved performance for large packing values
2012-10-26 12:59:43 +00:00
868984cb89
import of damask.core will not complain any more if done in setup_processing.py, however setup_processing.py will check if core.so exist after compilation and delete it before compilation
2012-10-25 07:55:27 +00:00
17bfc3b284
added explanation of script purpose to its usage output (-h)
2012-10-18 07:24:44 +00:00
573c4702eb
fixed bug in averageDown.py and added test to check its features
2012-10-17 15:05:26 +00:00
dcff640926
fixed handling of given resolution and dimension
2012-10-17 10:04:13 +00:00
6c7affc43f
improved performance (hopefully)
...
now each new element gets a new ID, running from 1 to N for N elements
2012-10-16 18:06:02 +00:00
1004d744f2
output speed-up by *show_table/*show_model masking
2012-10-05 21:49:33 +00:00
c377dae9a6
added option to create hexagonal grid (2D slices only, according to P. Konijnenbergs experience on 3D ang)
2012-10-05 17:25:54 +00:00
124451ac1a
added missing comment sign #
2012-10-04 08:42:13 +00:00
0a961bef55
made test for spectral packing/unpacking working again, small fixes in the 2 scripts
2012-09-28 14:49:07 +00:00
6d97a92913
further improvements on the conversion, seems to work quite good for the 2D case now
2012-09-28 12:10:10 +00:00
6619717baf
improved the conversion of tables to ang files
2012-09-26 12:20:14 +00:00
5dbbb56460
fixed bug in 2D output format alignment.
2012-09-13 12:28:21 +00:00
77b2eef269
corrected wrong compiler option for gfortran in setup and updated naming scheme
2012-09-13 12:20:00 +00:00
b76fee325b
script to shift (physical) origin of geometry file and/or shift microstructure indices by fixed amount and substitute individual indices by other ones.
2012-09-13 10:12:00 +00:00
66e38606f0
syntax errors in one file terminated the script. now continues with next input...
2012-09-13 10:09:54 +00:00
1c0649e17a
syntax errors in one file terminated the script. now continues with next input...
2012-09-13 10:08:57 +00:00
8078585ce8
removed two left-over debug statements
2012-09-13 08:46:18 +00:00
3d14c5b234
functionality now subsumed into geomCanvas
2012-09-13 07:58:29 +00:00
4263191423
functionality now subsumed into geomCanvas
2012-09-13 07:57:57 +00:00
1fe202fd90
added $ID and line endings.
2012-09-13 07:56:45 +00:00
4f6e0eda32
splitter geom-file un/packing into two separate scripts.
2012-09-05 15:15:11 +00:00
dc55e30cf1
added "startingIncrement" to spectralOut result interpretation
2012-09-05 15:14:36 +00:00
b7dc9f9944
renamed spectral_buildElements.py to nodesFromCentroids.py and added first simple version of an ascii table to ang converter
2012-08-30 17:01:46 +00:00
73349d02f5
merged precision info into the file prec.f90 and removed prec_single.f90
...
precision information is now parsed as a makro, defined by the compiler, eg. -DFLOAT=8 for 8 byte long floats or -- in case no values is given -- for the FEM wrapper by the interface files.
Please don't forget to run setup_code.py !!!!!!!!!!!
abaqus_v6.env is adjusted to specify the standard precision (float=8, int=4) and got some extra compilation options, some deprecated warning supressors are removed
Optional Marc modification will follow that allow automatic selection of suitable precision
2012-08-28 16:08:17 +00:00
3f99d2bb65
further improved prefix handling
2012-08-27 09:39:57 +00:00
96ba5ecae4
moved some more 'mesh related' functions for post processing from math.f90 to mesh.f90
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f2py functions remaining in math.f90 now uses assumed size arrays in order to have simpler interfaces. This is only working with python 2.7!
changed python pre- and postprocessing scripts.
If you encounter any problems whith core modules, try to remove the old core.so in the lib/damask
2012-08-27 08:04:47 +00:00
975c3437ac
added possibility to use comma in functions, to prevent splitting substituted by ';'. Eg. round(4.021,1) becomes round(4.021;1) in command line call
2012-08-22 17:47:34 +00:00
4cfc302cdd
put prefix in front of the filename, not the directory name
2012-08-03 13:14:51 +00:00
3d7bc40520
added output of defaults for mesh, points, and box to help
2012-08-02 13:22:57 +00:00
a94b089aaa
removed old fortran brute force based tessellation
2012-07-26 09:07:24 +00:00
13caf2d389
made linear shape reconstruction working again, pretty similar results like corrected FFT reconstruction
2012-07-18 18:39:59 +00:00
95d292b286
2012-07-18 12:31:07 +00:00
117d06404d
cleaned up the script for setting up the postprocessing tools
2012-07-17 13:23:39 +00:00
b30584b8d7
added "()" to file.close command
2012-07-03 12:33:11 +00:00
783e1b50e2
condensed info parsing.
...
added info to report new origin of grid (based on --offset).
2012-06-26 18:08:50 +00:00
fd3d592333
added capability to respect "origin" information in header
2012-06-26 18:07:38 +00:00
cd04f990c5
added $id$ property and LF ending
2012-06-26 17:20:16 +00:00
9041c5de39
fixed help texts
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killed full number range output option (use spectral_geomPack if needed)
2012-06-26 14:41:25 +00:00
2b5ff6a456
2 small corrections for header of geom file
2012-06-26 10:41:22 +00:00
9b76b47ef9
added missing extension causing invalid symlinking
2012-06-26 10:25:39 +00:00
baacbe3b11
added ifort as standard compiler, compilation is now done in DAMASK_ROOT
2012-06-25 09:06:09 +00:00
77ee33ec1f
script to changes the (three-dimensional) canvas of a spectral geometry description
2012-06-21 12:57:14 +00:00
06bfce0cd3
forgot to add the updated spectral_geomMultiply...
2012-06-20 17:06:28 +00:00
01a9290567
deleted old incarnation...
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new script follows established option parsing.
can rescale (increase only) the number of grid points in any dimension (with or without concurrent dimension scaling).
2012-06-20 16:00:48 +00:00
1105824562
new option to not rescale patch (set size = 0)
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added "3 header" to file output
will now extrude for spectral grids
2012-06-20 15:58:43 +00:00
925759000c
added option to select data separation character from a choice of:
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newline
tab (default)
space
2012-06-19 16:00:59 +00:00
376ec2cd94
add option to output double, triple, and quadruple scalars
2012-06-19 15:30:16 +00:00
c36a73c142
added include path for library files
2012-06-18 12:18:06 +00:00
a02dc204cc
added identifier for spectral solver when compiling post processing tools to setup/setup_processing.py
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test with intel compiler now uses ikml
2012-06-13 17:45:18 +00:00
dfc8606207
boundary conditions now consider patch dimension along pulling direction (used to be orthogonal to that..!)
2012-06-13 09:28:59 +00:00
98b790004a
Adding Second Piola-Kirchhoff data Coloumns (addPK2).
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Integrating Stress-Strain table Data numerically (integrate.py).
2012-06-12 14:09:16 +00:00
1c427e8642
loop corrected
2012-05-14 07:58:21 +00:00
542768d712
bug fixed
2012-05-11 08:36:42 +00:00
c962452cda
python version of voronoi_tessellation.f90 generating geom file and material_config file (using kd_tree nearest neighbor search)
2012-05-10 16:42:07 +00:00
c752dd5474
regridding is now working, changed the subroutine into a function
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changed order of arrays in nearest neighbor search to make it fortran fast
constitutive.f90 and homogenization.f90 write state size out during initialization
setup/setup_processing.py is using byterecl to be compatible with binary files written out by solver
2012-05-08 14:57:06 +00:00
34ef08c762
added unique naming of output file
2012-05-07 20:36:58 +00:00
a84838d3ba
removed erroneous print statements (leftover from debugging)
2012-05-07 19:28:21 +00:00
c9e17319ec
now with correct ID and LF line endings... ;-)
2012-05-07 19:11:46 +00:00
361b7ad398
new script to generate a twoD probability density map from ASCIItable data
2012-05-07 19:09:11 +00:00
c2954a2b33
now all heading labels squeeze out whitespace from their name.
2012-05-05 18:43:48 +00:00
b4775249e8
corrected standard check to make f2py working with gfortran
2012-05-03 17:12:36 +00:00
0cb983606f
spectral_geomPack is now formatting depending on necessary digits (via additional header information)
2012-05-02 13:44:12 +00:00
28e9b483ad
corrected wrong byte offset when reading thru 2^31-1-8 four-byte limit
2012-05-01 22:42:45 +00:00
b87b2160e7
fixed bug occurring for one item lines.
...
shortened logic here and there.
2012-04-25 13:53:56 +00:00
99f2b8603a
new script for reconstruction of elements from F/IP(spectral_buildElements.py), corrected spectral_randomSeeding.py, made post/postResults.py aware of additional header/footer for file positions larger than 2**31-1
2012-04-24 15:09:20 +00:00
f74b16051b
autodetection of line length for geomPack, updated description for both files
2012-04-24 11:31:18 +00:00
14356bf35e
new pre processing script for interpretation of "copies of" and "to" in geom files
2012-04-23 12:46:38 +00:00
335df4346f
deleted accidentally checked in file
2012-04-19 11:52:01 +00:00
31753be16f
updated setup/setup_processing.py with new files
...
added data_readLine(LINE) and data_skipLines(LINES) for ascii table
2012-04-18 11:42:57 +00:00
17f644b261
new scripts to add deformed configuration to ASCII table and for generation of layered 2D geometries (EBSD)
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addCompatibilityMismatch.py is now using functions from ASCII table library
2012-04-18 09:58:59 +00:00
997933e495
corrected setup for new names of files
2012-04-16 15:01:29 +00:00
f20cecd421
integrated subroutine for regridding into mesh.f90 and made it available for python
2012-04-10 15:15:46 +00:00
d638c563af
reworked python - fortran interfacing
2012-04-10 13:30:34 +00:00
a3b37356be
added svn flags
2012-03-31 12:42:49 +00:00
c29ae95af7
new version of AL spectral solver (seems to work, but still experimental)
...
new concept of DAMASK for Python: Now using also IO.f90, debug.f90 etc. instead of mimicing their necessary function. This needs DAMASK_python.f90 and DAMASK_python_interface.f90 (At the moment more or less copies of respective spectral files).
polished and renamed the scripts for converging ang files
renamed voronoi_randomSeeding.py to spectral_randomSeeding.py
2012-03-29 19:54:31 +00:00
30d38436c7
switched voronoi seeding to python
2012-03-29 16:41:23 +00:00
4a6cdcc2e2
moved and renamed tools for generating geom file from ang files. using python instead of c++ for hex2cub conversion
2012-03-27 17:47:39 +00:00
3816adac27
removed batch processing (easier done on command line) and changed interactive question for filename to cmd argument
2012-03-21 17:58:11 +00:00
33ab391c14
added total increment column
2012-03-14 15:05:49 +00:00
ac5b6233e6
initialize lastIncrement to 1
2012-03-14 14:59:20 +00:00
d2051e54a5
PBC meshing can work on 2D models
2012-03-14 13:40:22 +00:00
95a2ed3443
added ability to add "damask option" to input file
2012-03-13 14:08:09 +00:00
9b17015b5a
added option for nodal quantity output (uses "linear" translation).
...
improved stability when requesting non-existing increments.
2012-03-05 15:22:10 +00:00
dc7234fd02
new option "--suffix" adds a suffix to the filename
2012-02-28 14:24:45 +00:00
10e93244c1
writing info to stdout instead of stderr
2012-02-28 13:21:59 +00:00
fc40291f38
script to add a suffix to specified ASCIItable labels
2012-02-24 08:53:19 +00:00
89176ae7f1
added "deleteInfo" to list of symLinks
2012-02-23 13:56:50 +00:00
53d7076d05
remove the info part from ASCIItables
2012-02-23 13:53:50 +00:00
a2b46c8a36
columns can be called by index
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now pipe-aware...
2012-02-23 13:53:12 +00:00
d68a3d1869
added LF=UNIX to a bunch of files
2012-02-22 13:30:00 +00:00
ff4c281ed2
fixed whitelist/blacklist behavior (blacking out overrides whitelisting)
...
now broken pipes stop script's outputting.
2012-02-16 18:47:07 +00:00
a994b4bcc9
fixed problem when condition was empty
2012-02-16 18:00:40 +00:00
f2729255f8
changed name in install script, small corrections on regex
2012-02-16 15:15:43 +00:00
1bad5bf3c7
removed --count option. introduced 'internal' column #_row_#. adopted polished column head identification developed in filterTable. wiki updated.
2012-02-16 11:56:16 +00:00
9f45cb3745
new option: -c --count: count rows in ascii table and add column "row" with row number
2012-02-16 11:16:36 +00:00
edd5adafd0
now with ID and correct line endings...
2012-02-16 08:58:07 +00:00
37bd65ea34
script to filter an ASCIItable by condition. each row is evaluated against the condition, columns can be black- or white-listed (white wins)...
2012-02-16 08:36:35 +00:00
11d3c7a317
new spectra_parseLog searches through spectral log file and parses all possible output to an ascii table
2012-02-15 20:08:35 +00:00
b153a762cb
now using damask.core.math
2012-02-15 19:34:43 +00:00
Martin Diehl