615ff4ed06
[skip ci] vectorized
2019-05-31 23:26:32 +02:00
bf27505faa
Merge branch 'development' into geometry-class
2019-05-31 16:21:50 +02:00
02671c5c03
bugfix
...
shoud now work for any possible combination of new and old grid and
offset
2019-05-31 15:58:47 +02:00
979145f023
vectorized
2019-05-31 10:27:26 +02:00
46f0ad052e
direct support for vtk output
...
- geom_check can now handle multiple files
- microstructure index is stored as integer in vtk file
2019-05-30 15:35:45 +02:00
08052737cf
if grid is an option, it is a tuple
...
tuples do not have the prod() function
2019-05-30 14:28:31 +02:00
c2a5f37818
round to reasonable precision
...
without symmetry, there are 36000**3 = 46656000000000 orientations
2019-05-30 14:11:54 +02:00
bf60cffab5
cleaning
2019-05-30 14:07:49 +02:00
d0c7f8b934
texture is typically the more interesting information
...
therefore, but it to the top
2019-05-30 14:05:45 +02:00
8380071564
using geom class
...
- dropped the use of the material class as it does not allow to have
empty phase and crystallite. The material.config class needs a severe
refurbishing (no crystallite, use orderedDict instead of hand written
solution, drop of texture components). Probably best solution is to
postpone this until we have a yaml/json reader for Fortran.
2019-05-30 13:30:38 +02:00
7d07a3752f
polishing
2019-05-30 13:30:18 +02:00
461611cde7
polishing
2019-05-30 11:26:47 +02:00
49c3903cc7
explicit loop for simpler code
...
- no invalid combintations any more (allow to move the original
microstructure out of the new canvas)
- handling of origin needs discussion. When we want to recover the old
behavior, the origin might be located outside of the new geometry
2019-05-30 11:26:07 +02:00
e974bb9c43
similar structure for building blocks
2019-05-30 10:45:17 +02:00
510b55df50
several improvements
...
- more error checking
- order of points can be arbitrary also for microstructure input
- grouping of same orientation/phase combinations
2019-05-30 10:33:01 +02:00
931fa9d36a
standardized and cleaned
...
-write to file if given
-type casting is done in the geom class
2019-05-30 10:20:07 +02:00
07276d511c
modern python formatting
...
- 2 digits should be precise enough for euler angles
- no need to pad grain ID with leading zeros
2019-05-30 10:03:55 +02:00
73df615ff3
numpy meshgrid can do this now
2019-05-30 09:45:30 +02:00
4e0e5a2329
new python formatting style
2019-05-30 09:41:22 +02:00
f30eda0267
no need to loop over files
...
will procude the same file over and over again
2019-05-30 09:32:37 +02:00
cdc8338347
full (not periodic) mirroring is geom_mirror default behavior
2019-05-29 20:22:29 -06:00
d79f0c6290
replace geom_canvas --blank with geom_fromScratch
2019-05-29 20:02:06 -06:00
fd9801ba09
StringIO not needed
2019-05-29 19:44:38 +02:00
d7e8a66746
polishing
2019-05-29 14:18:11 +02:00
16bd5294aa
loop order as intented
2019-05-29 14:06:39 +02:00
78f30684f8
moderized
...
needs some polishing with respect to array orders
2019-05-29 09:40:56 +02:00
6836a2eae8
better readable
2019-05-29 08:04:01 +02:00
dfc2b47abc
better readable
2019-05-29 08:01:00 +02:00
8ee23b37b2
should not be part of the repo
2019-05-29 07:52:44 +02:00
bb6f54963a
save some memory (avoid copies if not needed)
2019-05-29 07:49:43 +02:00
9f68923038
restored old behavior
...
save some ressources by avoiding copies.
much slower than old version, better cast formula into meshgrid again
2019-05-29 07:38:11 +02:00
2eb964b1ea
simplified
...
needs some manual checking and proper test
2019-05-28 23:49:11 +02:00
100a2031d3
[skip ci] no white space needed
2019-05-28 07:55:24 +02:00
1f56ac6a4a
streamlining and bugfixing of geom-class
2019-05-27 22:45:34 -06:00
b69f0efbbc
improved and simplified reporting
2019-05-27 22:00:26 +02:00
5abcca50ee
Merge branch 'more-HDF5-postprocessing-cleaned' into development
2019-05-27 12:17:12 +02:00
59c6c5cfe4
not needed anymore
...
essentially, (gauss) is an Euler angle triplet
2019-05-27 10:49:50 +02:00
6e06764e2d
using (enhanced) central functionality
2019-05-27 08:38:02 +02:00
d9ab87cfde
crystallite will be removed soon, error handling is done by geom class
2019-05-27 08:35:24 +02:00
5cf63bbbc3
vtk 7 is out for more than 3 years
2019-05-27 08:34:36 +02:00
b5cec797c0
cleaned
2019-05-26 23:03:31 +02:00
c8dfba89e5
using class
...
still a very complex script
2019-05-26 22:49:05 +02:00
15d5a7ae28
don't access attributes directly
2019-05-26 22:08:14 +02:00
f251cdb746
simplified
2019-05-26 22:07:50 +02:00
af493cf9fd
using class
...
needs more memory, but should be faster and is better readable
2019-05-26 21:32:08 +02:00
99da46fda8
polished
2019-05-26 20:36:41 +02:00
657a30c2f5
using new functionality
2019-05-26 18:51:27 +02:00
feb2340935
self-reporting functionality for updating
2019-05-26 17:58:54 +02:00
34f7bbe2a0
'blank' option does not fit to flow of script
...
seeds_fromRandom -N 1 | geom_fromVoronoiTessellation -g 30 30 30 -s 1 1 1 > file.geom
or a few lines of python code give the same results
2019-05-26 13:06:22 +02:00
e7b8ae08d0
polishing
2019-05-26 12:14:48 +02:00
974f67ffdc
no frills
2019-05-26 12:06:51 +02:00
be3513d1e0
polishing.
...
python imports follow PEP8
2019-05-26 09:49:56 +02:00
a242382bed
Merge branch 'geometry-class' of magit1.mpie.de:/damask/DAMASK into geometry-class
2019-05-26 09:19:29 +02:00
b13aa799c3
updated error message
2019-05-25 17:00:41 +02:00
c89d344236
polishing
2019-05-25 13:51:05 +02:00
2b7d95f800
was accidently commited
...
gives different results due to interpolation from scipy
2019-05-25 12:09:09 +02:00
c92969787a
geom Class was updated
2019-05-25 11:56:06 +02:00
94f85b7f33
better readable
2019-05-25 10:45:58 +02:00
fc1f65c34e
works for dtype='float'
2019-05-25 10:36:46 +02:00
875643c363
same style
2019-05-25 10:24:45 +02:00
17eb0d1b20
using new class
2019-05-25 08:48:44 +02:00
4788fc6046
making use of new class
...
@philip: 1D arrangement needed?
2019-05-25 08:37:02 +02:00
6c7f7c77da
specifying non-existing or invalid files is an user error
...
this is the standard behavior for common unix tools, no need to make an
exception here
2019-05-25 08:24:32 +02:00
cf374a04dc
using new class
2019-05-25 08:21:00 +02:00
420abfa162
use new class
2019-05-24 22:34:27 +02:00
eb13fbc0ce
streamlined geom-info reporting; added --float option to some scripts; hardened against NaN; "microstructures" now reports uniques not max
2019-05-23 13:03:24 -04:00
e6cec6ecbe
added option to reverse inside/outside of primitive body
2019-05-23 12:49:03 -04:00
339b86f784
bugfix + more verbose reporting
2019-05-16 11:44:03 +02:00
9f7fa5393a
fix for scalar datasets
2019-05-16 09:31:13 +02:00
4599d1c34e
does not match
...
node does not make sense, is weirdly numbered
2019-05-16 00:42:22 +02:00
3c0c0a2cd1
more flexible in selecting data
2019-05-16 00:27:06 +02:00
998789528c
Merge branch 'HDF5-out-homog-2' into 'development'
...
Hdf5 out homog 2
See merge request damask/DAMASK!78
2019-05-13 17:34:59 +02:00
feb1465803
Better to have actual increment num in output file
2019-05-08 17:31:18 +02:00
0cc2b1214d
store requested data in ASCII file
2019-05-07 15:18:12 +02:00
1eaf67ad82
store results in subdirectory
...
defaults to postProc
2019-05-07 13:30:05 +02:00
f65423fe9f
rudimentary postResults for HDF5 output
...
only meant for compatibility during transition
2019-05-05 10:09:23 +02:00
8a9baf6d78
preparing output of mech_homog to HDF5
2019-04-30 18:45:38 +02:00
d74599d39a
Merge branch 'HDF5-postprocessing' into 'development'
...
Hdf5 postprocessing
See merge request damask/DAMASK!72
2019-04-29 23:24:42 +02:00
6b7fd6b7ea
visualizing data from DADF5: first prototype
2019-04-18 11:58:17 +02:00
7177813710
adding data to geometry
2019-04-17 19:57:16 +02:00
8eb1a35dfb
first version of a library to parse HDF5
...
- preliminarly called DADF5 (DAMASK HDF5)
- script to write (empty undeformed) geometries is also added
2019-04-13 11:25:53 +02:00
0c6fde97f9
wrong positions for point visualization
...
- now the cell centers are at the centers of the cells for cell
visualization
2019-04-13 00:42:05 +02:00
ed7423a3d6
bug fixes
2019-03-10 08:16:01 +01:00
67619fa92a
consistent definition of axis angle
2019-03-09 20:18:28 +01:00
433281f71d
following Rowenhorst convention
2019-03-09 19:58:17 +01:00
0d08659b2a
general cleaning
2019-03-09 11:11:40 +01:00
60feb96afd
let vtk decide on the file extension
2019-03-09 11:11:40 +01:00
5ab8e50d09
consistent with reference paper
2019-03-08 19:07:19 +01:00
b84d4f1b6a
improved error handling/clearer messages
2019-03-05 10:58:57 +01:00
e030038b73
[skip ci] added --blank option to create fresh canvas (from nothing)
2019-02-27 19:37:38 -05:00
c706ca5ba3
no progress bars in quite mode
2019-02-26 21:22:49 -05:00
f3d2803443
addMises failed for single run of either --stress or --strain
2019-02-25 19:29:12 -05:00
2089726800
corrected output extension of vtk files to reflect binary format
2019-02-25 18:48:40 -05:00
e401c21266
dropped obsolete option --inplace from geom_check
2019-02-25 18:30:45 -05:00
e88182b007
improved converte, now with test
...
still needs to figure out how +P is handled
2019-02-24 14:39:34 +01:00
0d7fd587e3
direct translation from DREAM.3D to DAMASK geom
...
needs test
2019-02-24 12:59:10 +01:00
95be7ef938
directly convert to geom file + material config
2019-02-24 10:33:30 +01:00
903edcd429
do not patronize the user, rather give hints
2019-02-24 10:31:08 +01:00
d3ac3cc0f5
using new Orientation class
2019-02-24 08:34:20 +01:00
9dc8dff4b1
cleaning and adding compatibility layer
2019-02-23 22:35:04 +01:00
9fa2553af4
task for DREAM.3D if needed
...
pointwise takeover should not be a problem anymore as reading in takes
no time (at least in comparison to addGrainID)
2019-02-23 22:14:55 +01:00
a8e8b75cc0
use new rotation class
2019-02-23 22:13:24 +01:00
fff377de7f
initial simplification.
...
Should be able to generate from table containing either <microstructure>
or <texture> and <phase>
2019-02-23 22:06:31 +01:00
b3455c825e
transition to new orientation class
...
forward-backward conversion quite stable
2019-02-23 21:49:05 +01:00
e4bb61c9d9
transition to new orientation class/DREAM.3D
2019-02-23 11:37:09 +01:00
93ae5cbd07
Merge remote-tracking branch 'origin/development' into 10-consistent-orientation-conversions-3
2019-02-22 23:05:36 +01:00
3bec76e781
can now deal with 1x1x1 geoms
2019-02-19 12:06:46 -05:00
25727bfa52
using CamelCase
2019-02-19 10:32:18 +01:00
43a451b2e1
inplace not useful
...
use shell script if you want to keep an backup of your old data
2019-02-18 14:36:04 +01:00
27ebe1f665
improved documentation
2019-02-17 08:17:40 +01:00
5c20609e81
more verbose help, drop support for really old vtk
2019-02-16 22:20:44 +01:00
802ef6fe5c
more precise help
2019-02-16 18:25:41 +01:00
c6781e415a
using default notation for vector access
2019-02-16 18:23:00 +01:00
0b1bfdfd4e
was only working with python2
2019-02-16 18:17:05 +01:00
29fc53fdcb
more specific about invocation
2019-02-16 17:41:56 +01:00
fa003e8077
small adjustments for autodoc
2019-02-16 15:26:21 +01:00
4ce151c967
camel casing (easer for foswiki)
2019-02-15 23:22:51 +01:00
0cc4e582e4
Merge branch 'development' into 26_autodoc-2
2019-02-15 20:47:14 +01:00
566099ad81
automatic documentation for some post processing scripts
2019-02-15 18:52:47 +01:00
dc133344b6
[skip ci] migrated to python3 compatibility
2019-02-14 18:44:06 -05:00
d58c3008ae
fixed too long line in addLinked
2019-02-14 18:31:22 -05:00
742d58cfce
added ASCIItable tests to CI pipelining
2019-02-14 18:24:09 -05:00
c4cb35891c
all fine with python3
2019-02-14 22:56:39 +01:00
889cfc8ba0
vtk script only work with python3 on new testing
2019-02-14 01:39:54 +01:00
217024667b
forgotten comma
2019-02-12 11:30:43 +01:00
608852df83
rotation paper has angle as last component
2019-02-12 10:58:38 +01:00
7da8980cc0
bugfixes: wrong shape, wrong conversion
2019-02-12 09:04:35 +01:00
336a80091f
rodrigues is 4-vector with rotation being the last component
...
established a single source of truth for length
2019-02-12 08:59:26 +01:00
97ac437686
more user friendly constructors
2019-02-12 08:14:27 +01:00
ef3fc0b58a
bugfix: wrong array indexing
...
rotation of meshgrid tuple implemented
2019-02-12 07:42:46 +01:00
48b0307fab
using new rotation class
...
cannot rotate matrices (3,3) and (3,3,3,3) at the moment
2019-02-12 00:27:13 +01:00
74956c0290
avoid error for empty "name"
2019-01-23 20:59:07 -05:00
da115ca9d4
probably never used and outdated (python2.7)
...
doing the same conversion via DREAM.3D will be available soon
2019-01-16 17:51:37 +01:00
c5dabbb68f
correct comment sign
...
the # indicates the end of a list
2019-01-09 16:31:00 +01:00
0dca8d2740
compatible to python 3 and mentat >= 2017
2019-01-09 16:28:21 +01:00
1192f16582
Merge remote-tracking branch 'origin/development' into 56-parallel-hdf5
2019-01-06 20:56:36 +01:00
7768c5874b
simpler interface for progress bar
2019-01-05 10:41:49 +01:00
c00d00c219
Merge remote-tracking branch 'origin/development' into misc-improvements
2019-01-05 09:22:41 +01:00
3c5df0a4a4
[skip ci] viewTable acknowledges requested output type(s)
2019-01-04 16:34:21 -05:00
bcd4288f1e
[skip ci] groupTable according to unique values in more than one column
2019-01-03 18:25:28 -05:00
b5d62c8e29
[skip ci] print estimated remaining processing time for postResults
2019-01-03 11:31:04 -05:00
835e3f95a5
[skip ci] was not used
2018-12-31 08:05:56 +01:00
6f40989465
order was randomized when creating dict
2018-12-31 07:18:45 +01:00
a992b8b1f5
random order caused test to fail
...
rather a workaround, but since HDF5 is coming...
2018-12-30 11:41:22 +01:00
9bdd4d1d68
added <!skip> line to stop config parser from trying to interpret rest of geom description---huge speedup!!
2018-12-20 17:22:29 -05:00
25a80723c0
numpy interface changed to be strict about 2D array shape in histogram
2018-12-20 17:14:55 -05:00
1ef82e351b
Merge branch 'orientationClass_with_negative_P' into development
2018-12-20 20:43:00 +01:00
7df6dfbf3f
renamed "showTable" to "viewTable" to avoid clashing with astropy.table module
2018-12-18 15:10:26 -05:00
5d7f930592
math.isclose does not exist for older versions
...
np.isclose does the same
2018-12-17 20:04:16 +01:00
3bab08fdeb
Merge branch 'development' into 56-parallel-hdf5
2018-12-12 07:46:02 +01:00
1f2fbbee21
consistent name
2018-12-10 09:38:57 +01:00
767650e002
more general option + improved descriptions
...
hopefully more user friendly
2018-12-10 09:27:39 +01:00
d219842ad8
[skip ci] consistent tolerances
2018-12-09 20:19:33 +01:00
60686fb72c
[skip ci] improved reporting
2018-12-09 18:05:37 +01:00
bc04b83d8a
no reason for using python2.7
2018-12-09 14:09:26 +01:00
08ac49fac0
line too long
2018-12-09 13:21:56 +01:00
130fac21c6
cleaning
2018-12-09 13:15:59 +01:00
d43dfa569b
lines too long
2018-12-09 12:37:27 +01:00
65165ffc5e
assumed wrong type
...
quaternion should have lenght one
2018-12-09 12:35:32 +01:00
697d97cd38
cleaned
...
legacy format was for pre-MPI output where the extra bytes at start and
end of a chunk (Fortran out) had to be handled manually
2018-12-09 12:30:07 +01:00
5054291557
python3 compatible status message
2018-12-09 12:25:31 +01:00
741032339e
time/math/datatype are not used/defined any more
2018-12-09 11:05:35 +01:00
aefa006d09
simplified
...
assume quaternions as input
2018-12-09 10:53:53 +01:00
213e31ff87
string was split into letters
2018-12-09 10:53:25 +01:00
d9b47f09bc
modernized
...
split arguments logically, assume 3-vector for coordinates
2018-12-09 10:52:37 +01:00
7eaea64d09
python3 compatible
...
hope that the new bar causes less trouble than the background message
2018-12-09 09:08:33 +01:00
6b73840853
works with python3
2018-12-09 08:07:40 +01:00
83a3628765
bug fixes
2018-12-09 07:58:42 +01:00
d145b257aa
new version of numpy complain about overlong range argument
2018-12-09 07:57:05 +01:00
4130cbcffa
simplified
...
- always use quaternion as input for orientation
- addAPS34IDEstrainCoords uses table functionality
- rotateData can figure out whether input is vector or tensor
2018-12-09 07:10:31 +01:00
3f8726464d
addOrientations now checks its input for convention conformity
2018-12-08 13:22:22 -05:00
eaf2c77903
Merge branch 'orientationClass_with_negative_P' of magit1.mpie.de:damask/DAMASK into orientationClass_with_negative_P
2018-12-07 22:07:22 -05:00
ac45a9e2d3
more output options, frame input changed to "lab expressed in crystal"
2018-12-07 22:03:14 -05:00
e8f4dc4c9f
Merge branch 'orientationClass_with_negative_P' into development
2018-12-06 07:26:08 +01:00
ee7e4ee0d9
python3 has different encoding syntax
2018-12-06 06:27:07 +01:00
a6d4c73de0
added list of map and introduced "quat" keyword in quaternion init
2018-12-05 10:20:05 -05:00
c0f7ae2798
updated scripts that still used formerly valid object properties of quaternions
2018-12-05 09:07:29 -05:00
1d7172c971
adopted more intutitive alternative of P=-1 from Rowenhorst_etal2015
2018-12-04 17:05:35 -05:00
8f26fc9358
Merge remote-tracking branch 'origin/development' into 56-parallel-hdf5
2018-12-04 22:34:29 +01:00
7c1e2e256c
os.urandom returns byte, not string in python3
2018-11-24 10:07:47 +01:00
c0ad496764
eigenvalue solver seems to depent on python version
2018-11-22 23:13:49 +01:00
76accdeaf2
all orientations are passive now
...
.conjugated() not needed anymore.
Rest is polishing
2018-11-22 18:45:01 +01:00
9b82b7fadd
removed obsolete keyword "Bunge" from asEulers() method
2018-11-22 11:51:53 -05:00
ba5b623f14
Merge branch 'development' into improved-HDF5
2018-11-18 19:44:36 +01:00
fcb14f6099
was never used
2018-11-18 12:04:08 +01:00
d53b01ab56
also works for python3
2018-11-18 08:04:52 +01:00
8ee2de61ea
map returns no list any more
2018-11-17 12:12:20 +01:00
257d9d5350
needs to be list
2018-11-17 12:12:20 +01:00
44bd85a041
not working for python3, trying
2018-11-17 12:12:20 +01:00
e1a730e96b
python3 compatible integer division and argument sequence in agreement with documentation
2018-11-17 09:58:54 +01:00
015e819d4c
python3 does not allow to compare tuple/list with int
2018-11-17 09:29:05 +01:00
82861e80bc
more python3 related changes
2018-11-17 08:46:58 +01:00
558745b548
explicitly require python3
...
on older systems, python3 tpyically exists but python2 is the defaul
2018-11-17 08:12:12 +01:00
50f880afd1
more scripts working with python3
2018-11-16 19:32:17 +01:00
4ffb4a4321
fixed several typos
2018-11-16 19:28:24 +01:00
9922f5f646
adjusted to python3
...
translate is more complicated now:
https://stackoverflow.com/questions/41708770
2018-11-16 12:23:45 +01:00
26811b74d6
known to work with python3
2018-11-16 09:18:29 +01:00
a3647cc587
more files with confirmed python3 compatibility
2018-11-16 09:03:12 +01:00
f47891e292
booleans not allowed as indeces any more
2018-11-16 09:03:12 +01:00
e9e3fef8d4
more python3 compatible scripts
2018-11-15 16:40:54 +01:00
Martin Diehl