Commit Graph

547 Commits

Author SHA1 Message Date
Martin Diehl 5b376712ef bugfix: wrong coordinates 2019-12-13 14:39:10 +01:00
Martin Diehl e5448fc381 avoid code duplication 2019-12-13 14:36:52 +01:00
Vitesh Shah 7d849b639b Point based vtk file in DADF5 class 2019-12-13 14:20:18 +01:00
f.basile 57a69ad4c9 Reupload PDF pole figures. 2019-12-13 13:32:16 +01:00
f.basile 0c30f6b1df Polishing Mtex script for plotting pole figures. 2019-12-13 12:52:33 +01:00
Martin Diehl b14c15fd9e directly output DADF5 to vtk from python 2019-12-13 12:15:45 +01:00
Martin Diehl 63fc125398 include origin do DADF5
requires updat of file version
2019-12-13 09:12:07 +01:00
Philip Eisenlohr cc6f771368 [skip ci] strip whitespace from VERSION 2019-12-12 18:10:22 -05:00
Philip Eisenlohr 582f895d18 restored Solver module functionality 2019-12-12 16:58:37 -05:00
Philip Eisenlohr e37daadaff restored environment functionality 2019-12-12 14:57:07 -05:00
Philip Eisenlohr 41ed7ce462 "pip install damask" either locally or from PyPI after upload 2019-12-12 14:32:51 -05:00
Martin Diehl 1d7010778e [skip ci] silence annoying warnings 2019-12-11 19:43:23 +01:00
Martin Diehl fcbe4ee5a2 [skip ci] polishing 2019-12-11 18:08:51 +01:00
Martin Diehl bd12ef83b9 parametrizing 2019-12-11 18:01:24 +01:00
Martin Diehl 37e52fd81f polishing 2019-12-11 16:51:13 +01:00
f.basile 562d216fa9 bcc is passive rotation and fcc is active rotation 2019-12-11 09:23:12 +01:00
Martin Diehl 0b04843c91 pandas is needed for Table class 2019-12-11 08:11:00 +01:00
Martin Diehl e142d00d02 test now sensible to wrong rename 2019-12-10 20:05:24 +01:00
Martin Diehl 4c1281b4fc rename changed order in shapes dict.
This resulted in wrong column names when writing to ASCII file

two fixes (one would be enough):
1) keep order (build new directory)
2) write in order of labels in pandas dataframe, not in order in shapes
dict
2019-12-10 20:04:03 +01:00
f.basile ca06c1d3a2 Fix bugs in relatedOperations for NW,GT and GTprime. 2019-12-10 13:49:33 +01:00
Martin Diehl d1fa2a14dc was used only for yield surface fitting 2019-12-09 05:28:00 +01:00
Martin Diehl 5a9173ccf4 might simplify plotting in MTEX 2019-12-08 21:57:07 +01:00
Martin Diehl fa9ee6b116 using reference results for orientation relationships 2019-12-08 21:48:32 +01:00
Martin Diehl 53cb59fc47 use pytest instead of hand-written test class 2019-12-08 21:29:26 +01:00
Martin Diehl 6dfe24290c Merge remote-tracking branch 'origin/development' into fix-orientation-relationship-2 2019-12-08 21:10:50 +01:00
Martin Diehl b56864552f testing forward <-> backward conversion 2019-12-08 21:05:34 +01:00
Martin Diehl 21431295fb documenting 2019-12-08 20:20:13 +01:00
Martin Diehl 4e2e7d02f6 more sensible interface 2019-12-08 18:54:41 +01:00
Martin Diehl 7dc128ad12 polishing 2019-12-08 18:33:43 +01:00
Martin Diehl 828e82605e ensure that data is correctly ordered 2019-12-08 18:13:45 +01:00
Martin Diehl 8d0c4310cf improvements to grid generation
- handling of origin
- inverse functions: calculate grid,size,origin from regular coordinates
(cell or node). should replace corresponding functionality in util
2019-12-08 18:12:22 +01:00
Martin Diehl 9dc726ff53 polishing 2019-12-08 09:17:57 +01:00
Martin Diehl ba69f5a631 polishing 2019-12-07 22:33:31 +01:00
Sharan Roongta 96710a238d Merge branch 'development' of magit1.mpie.de:damask/DAMASK into incs-no-leading-zero 2019-12-06 15:25:21 +01:00
Martin Diehl 4ddfd82304 better names 2019-12-05 18:32:21 +01:00
Martin Diehl b1ff178109 Merge branch 'new-ASCII' into grid-filters 2019-12-05 18:06:56 +01:00
Philip Eisenlohr 2648a67dcd fixed sort_by to respect updated index (upon subsequent adding of new data) 2019-12-05 12:02:10 -05:00
Philip Eisenlohr 3caf2c1296 condensing code 2019-12-05 09:05:50 -05:00
Martin Diehl e7358746dc taking care of prospector complaints
variables in 'eval' are hidden
2019-12-05 10:54:35 +01:00
Martin Diehl 274aaa7359 Merge branch 'new-ASCII' into grid-filters 2019-12-05 10:50:56 +01:00
Martin Diehl 1018b89296 nice to have.. 2019-12-05 10:48:42 +01:00
Martin Diehl f885748a58 variable was never used 2019-12-05 08:43:14 +01:00
Martin Diehl 1bf4946e67 invalid escape sequence 2019-12-05 08:37:39 +01:00
Martin Diehl 469d638afb making table class feature complete 2019-12-05 06:57:09 +01:00
Martin Diehl ee8e3386f4 shorter but still descriptive names 2019-12-05 06:16:29 +01:00
Martin Diehl e7a67262f8 clear enough 2019-12-05 06:00:49 +01:00
Martin Diehl 2172e92e7e test exotic input files 2019-12-05 05:57:47 +01:00
Martin Diehl 5fdf112f78 allow strings as data in ASCII file 2019-12-05 05:45:27 +01:00
Martin Diehl 1c83572589 more descriptive names 2019-12-05 05:11:58 +01:00
Martin Diehl 381c95bd1e WIP: regrid functionality 2019-12-04 10:41:02 +01:00
Martin Diehl 07e9778798 one more test 2019-12-04 10:20:57 +01:00
Martin Diehl bc41bbbec5 test coordinates-related functions 2019-12-04 09:23:08 +01:00
Martin Diehl 999321e588 Merge branch 'new-ASCII' into grid-filters 2019-12-04 07:45:01 +01:00
Martin Diehl 285075bb6b ordered alphabetically 2019-12-04 06:15:32 +01:00
Martin Diehl 6902d3dd0a repeated test
better sort alphabetically
2019-12-04 06:04:06 +01:00
Martin Diehl 6c31e22855 testing new style DADF5 file 2019-12-04 05:59:52 +01:00
Martin Diehl 32ebcea207 more tests 2019-12-04 05:49:43 +01:00
Martin Diehl fecd4632b4 correct reporting of time 2019-12-04 05:49:17 +01:00
Martin Diehl 58a190ede8 Merge branch 'development' into incs-no-leading-zero 2019-12-04 05:19:38 +01:00
Martin Diehl 1110affec2 Merge branch 'new-ASCII' of magit1.mpie.de:/damask/DAMASK into new-ASCII 2019-12-04 05:10:01 +01:00
Martin Diehl 9ad8743396 using central functionality 2019-12-03 22:00:21 +01:00
Martin Diehl e006e0ebec functions for spatial coordinates on regular grids 2019-12-03 18:59:59 +01:00
Martin Diehl 3effea8e1d also check operations that should NOT work 2019-12-03 17:03:03 +01:00
Martin Diehl f5bbd3cf22 ensure functionality through unit testing 2019-12-03 16:39:54 +01:00
Martin Diehl ff1778d149 Merge branch 'development' into new-ASCII 2019-12-03 15:56:49 +01:00
Martin Diehl 8f77843b0f improved naming
- clearer variable names
- no '-' in attributes
- single source of truth
2019-11-30 09:01:37 +01:00
Martin Diehl 354c0123a1 backward compatibility 2019-11-30 08:40:59 +01:00
Martin Diehl 4185fcb4c3 adjust to new naming 2019-11-29 21:40:54 +01:00
Martin Diehl dc3fc8f70c do not clutter with leading zeros 2019-11-29 17:00:48 +01:00
Martin Diehl 76a1506893 small improvements
bugfix: writing correct labels (now consistent with readin)
error handling for inconsistent initialization
2019-11-28 20:18:54 +01:00
Martin Diehl f2e722ed2e polishing 2019-11-28 18:22:34 +01:00
Martin Diehl 3e65d44e07 centralized facilities for differential operations
note the need to reverse the grid shape in data from the ASCII table. If x is fastest,
z is slowest we require x to be the rightmost index
2019-11-28 15:46:22 +01:00
Martin Diehl 80b50f460e cleaning
trying to get rid of strange re-ordering related to ASCII table data
layout
2019-11-28 10:09:22 +01:00
Martin Diehl ca92400c2f polishing
columns is the term used py pandas
2019-11-28 05:58:28 +01:00
Martin Diehl b85049cb81 use brackets for line continuation with comments 2019-11-28 05:41:53 +01:00
Martin Diehl 98d5738fe6 Merge branch 'new-ASCII' into grid-filters 2019-11-28 05:12:36 +01:00
Martin Diehl 80002e6cfd proper capitalization 2019-11-27 13:21:41 +01:00
Martin Diehl cee095b58e better use centralized code 2019-11-27 12:22:28 +01:00
Martin Diehl 7d4b982c73 make information on modifications mandatory 2019-11-27 12:08:23 +01:00
Martin Diehl 76c3577378 pandas.DataFrame needs to be a 2nd order array 2019-11-27 12:03:35 +01:00
Martin Diehl 39734ef53c alter data
allows to access multiple columns ('f') and individual components
('1_f')
2019-11-27 10:56:29 +01:00
Martin Diehl 96714089b1 documented and tested handling of multi-dimensional data
more precise regex expressions. get_array can handle individual
components
2019-11-27 09:58:58 +01:00
Martin Diehl 882a11c5f8 get labels without shape information 2019-11-27 08:43:20 +01:00
Martin Diehl 2d96136a0d more general constructor for Table
reading from file is just one case (now handled by static method).
General constructor needs data and header information as dictionary.
Works only with python 3.7 where dict keeps the insertion order. Earlier
python versions/other implementations might fail.
2019-11-26 22:53:46 +01:00
Martin Diehl 5661f60552 fname seems to be the common name 2019-11-26 21:36:24 +01:00
Martin Diehl 925a4f73d6 staticmethod better suited than class method
a classmethod changes the class, i.e. it assigns attributes and gives
them specific values.
a staticmethod does not alter the class

https://www.geeksforgeeks.org/class-method-vs-static-method-python
2019-11-26 20:32:54 +01:00
Martin Diehl 845cfc34ec similar logic as in geom class
- filename is not part of the object
- transparent handling of files, strings, and path-like objects for file
IO
2019-11-26 14:26:25 +01:00
Martin Diehl 81abc43920 Merge branch 'development' into new-ASCII 2019-11-26 10:29:05 +01:00
Martin Diehl 23f5e0fa58 filters for operations on regular grids (in fourier space) 2019-11-26 10:25:39 +01:00
Martin Diehl af78aaf2f1 testing rescale 2019-11-25 14:01:40 +01:00
Martin Diehl e16024ddf9 Merge branch 'PythonImprovements' into pytest 2019-11-25 14:00:24 +01:00
Martin Diehl 476569390a enable use of path objects, strings, and opened files 2019-11-25 13:47:14 +01:00
Martin Diehl b757f02649 avoid repetitions 2019-11-25 12:04:57 +01:00
Martin Diehl 6d25506204 test for new pack functionality 2019-11-25 09:28:59 +01:00
Martin Diehl 969fa9bbc7 Merge branch 'PythonImprovements' into pytest 2019-11-25 09:15:06 +01:00
Martin Diehl 3e8518d861 following prospector guidelines 2019-11-24 19:30:00 +01:00
Martin Diehl c9f9f7c681 pack causes trouble with tests .. 2019-11-24 19:02:19 +01:00
Martin Diehl b2cdabd009 getting rid of shell scripts 2019-11-24 18:25:53 +01:00
Martin Diehl 816e86ae5f phasing out python shell scripts 2019-11-24 15:13:26 +01:00
Martin Diehl 8186be6293 compress functionality should be part of the geom class
automated decision is base on heuristic whether compression is memory
efficient
2019-11-24 14:27:24 +01:00
Martin Diehl 02df55b9bd bugfix
casting to plain array works only (and makes sense only) for a derived
type
2019-11-24 11:18:41 +01:00
Martin Diehl 6060abb375 cleaning 2019-11-24 09:10:47 +01:00
Martin Diehl c9b1944493 handling of derived datatypes/structs
currently required for orientation
2019-11-24 08:50:27 +01:00
Martin Diehl f30cbde99e use first constituent as default 2019-11-24 08:04:40 +01:00
Martin Diehl 928a5c2e55 better use fixtures 2019-11-24 06:29:00 +01:00
Martin Diehl 2b392241f9 Merge branch 'PythonImprovements' into pytest 2019-11-23 19:25:22 +01:00
Martin Diehl 406ae29897 adopting rename in mechanics 2019-11-23 19:22:18 +01:00
Martin Diehl 3be1caa4ef read_dataset has at least two dimensions 2019-11-23 19:21:41 +01:00
Martin Diehl eb80a82e05 first idea how to test pointwise operations 2019-11-23 18:58:44 +01:00
Martin Diehl e3f8195621 no not change line endings 2019-11-23 17:08:36 +01:00
Martin Diehl 4dc4442fae small DADF5 file for testing 2019-11-23 16:15:08 +01:00
Martin Diehl 510e4752fd using parametrized tests for better coverage 2019-11-23 14:03:47 +01:00
Martin Diehl 2810531c97 a test with reference results 2019-11-23 13:37:03 +01:00
Martin Diehl 834cd43b66 intention not clear
any ideas why __transforms__ was used?
2019-11-23 08:06:26 +01:00
Martin Diehl ea4c4b6636 Merge branch 'PythonImprovements' into pytest 2019-11-22 22:10:20 +01:00
Martin Diehl dfb95df689 migrating shell scripts to python class 2019-11-22 21:48:41 +01:00
Martin Diehl c00af5c402 4 space indents are common practice 2019-11-22 20:52:36 +01:00
Martin Diehl e5e3db8286 Merge branch 'PythonImprovements' into pytest 2019-11-22 15:42:27 +01:00
Martin Diehl fad679a9a5 need to catch IOError 2019-11-22 15:19:20 +01:00
Martin Diehl 6e0b2a4fab following prospector rules 2019-11-22 13:16:53 +01:00
Martin Diehl dac63f7d92 subfolders not needed 2019-11-22 12:55:56 +01:00
Martin Diehl 77e410d7d1 follow prospector rules 2019-11-22 12:17:44 +01:00
Martin Diehl a26a5738dd polishing 2019-11-21 21:48:54 +01:00
Martin Diehl e0f3fe3cc0 ported from hand written test class 2019-11-21 21:01:01 +01:00
Martin Diehl a3376a35b7 testing mechanics module with pytest 2019-11-21 20:00:28 +01:00
Martin Diehl cf88c1f907 correct syntax for integer comparison 2019-11-21 19:49:46 +01:00
Martin Diehl a5ae82fe90 handle deprecation warning in python 3.8 2019-11-21 19:47:27 +01:00
Martin Diehl 7a7eea47b5 correct handling of arrays
all strains measures except for logarithmic had wrong off-diagonal
components
2019-11-21 19:46:05 +01:00
Martin Diehl fb286af354 [skip sc] first draft 2019-10-31 10:47:40 +01:00
Martin Diehl 1c10459a5a also use fast operation order 2019-10-30 21:09:17 +01:00
Martin Diehl 8a85123abc 4 space indent is python standard 2019-10-30 18:05:44 +01:00
Martin Diehl b733bd3038 polar decomposition 2019-10-28 11:18:26 +01:00
navyanthkusam fca288ae8a performance improvement
this mapping is faster for large volumes
2019-10-25 14:47:36 +02:00
Philip Eisenlohr 894b646283 corrected name of U,V; fixed Mises_strain factor from 3/2 to 2/3; 2019-10-23 15:03:24 +02:00
Martin Diehl 2d08eb68b1 bugfix for (3x3) version of Cauchy 2019-10-23 14:39:52 +02:00
Martin Diehl 5e7f9a223b should be a passive rotation 2019-10-21 23:17:58 +02:00
Martin Diehl 9489c04ccb less confusing 2019-10-21 23:02:31 +02:00
Martin Diehl ecc51e34d3 rouding should affect color calculation
avoid NaN in math.power(x,0.5). math.power(-0.0,0.5) is ok
2019-10-21 22:44:12 +02:00
Martin Diehl 578cbf9bbf bugfixes:
- vonMises calculation was wrong
- wrong type of data used in some add_XXX
2019-10-21 18:07:35 +02:00
Martin Diehl 78a2941436 avoid numerical issues 2019-10-21 16:59:49 +02:00
Martin Diehl 51ed4d68e6 more info 2019-10-20 13:13:48 +02:00
Martin Diehl b593dfbfd9 better layout 2019-10-20 11:34:05 +02:00
Martin Diehl f00f6952c0 selecting by increment is a common task
https://www.python.org/dev/peps/pep-0257/
The docstring is a phrase ending in a period. It prescribes the function or method's effect as
a command ("Do this", "Return that"), not as a description; e.g. don't write "Returns the pathname ...".
2019-10-20 11:00:10 +02:00
Martin Diehl 8f315836b0 easier to use if end time is included: 2019-10-20 10:42:45 +02:00
Martin Diehl 64731369e3 general definition for strain tensors 2019-10-19 16:05:53 +02:00
Martin Diehl a665d5726d polishing 2019-10-19 13:22:37 +02:00
Martin Diehl b31de5d0f6 outsourcing tensor math to mechanics class
strain calculation is generalize to arbitrary order and simplified: No
need for svd, F^T F/F F^T does the job.
2019-10-19 12:54:16 +02:00
Martin Diehl e51f6cee72 improved handling of string types for HDF5
- convert bytes to string when reading
- convert string to bytes when writing
2019-10-19 09:47:26 +02:00
Martin Diehl 5f0a48fae7 enhanced and documented 2019-10-19 08:51:51 +02:00
Martin Diehl dc9aca5710 copy and paste error/invalid syntax 2019-10-18 20:57:36 +02:00
Martin Diehl 5858d03a6b prospector complaints for stupid reasons 2019-10-18 20:55:39 +02:00
Martin Diehl 3336cfc3da better have tensor functions available
allows in-memory evaluation of results
2019-10-18 20:50:03 +02:00
Martin Diehl 1a34a6f7b5 some useful tensor operations 2019-10-18 20:41:39 +02:00
Martin Diehl 47ba7d49b5 allow to use the same label twice in a function 2019-10-18 20:39:00 +02:00
Martin Diehl de912c22b4 Merge branch 'development' into HDF5-spectral-displacements 2019-10-18 12:54:12 +02:00
Franz Roters 91691744c6 Merge branch 'Marc-No-nonlocal' into 'development'
Marc no nonlocal

See merge request damask/DAMASK!98
2019-10-15 10:35:37 +02:00
Martin Diehl 708bbd3cb9 mesh/grid type transparent handling of coordinates 2019-10-12 16:15:04 +02:00
Martin Diehl b208fa6565 takeover from Vitesh's work with small adoptions to current DADF5 2019-10-12 08:02:57 +02:00
Martin Diehl 0eef73935e handling of derived types (orientation for the moment) 2019-10-11 08:35:21 +02:00
Martin Diehl b8a1a5bb7d v 0.2 is ok, not sure what the future brings so better check 2019-10-03 20:23:49 +02:00
Martin Diehl 0b29d08109 bump to DADF5 v0.3
contains displacements (for grid solver)
2019-10-03 19:02:17 +02:00
Martin Diehl 62fb4d2ea9 polishing 2019-10-01 14:30:09 -07:00
Martin Diehl e96eb55edd calculate different strain tensors 2019-09-30 14:28:58 -07:00
Martin Diehl 0e3b09adc1 negative eigenvalues are not possible
left/right Cauchy-Green Deformation Tensors are positive definit
https://de.wikipedia.org/wiki/Deformationsgradient
2019-09-30 14:12:15 -07:00
Martin Diehl d95a795e3b Merge branch 'MiscImprovements' into HDF5-spectral-displacements 2019-09-30 13:53:24 -07:00
Martin Diehl 0dd14a0652 correct reporting of version 2019-09-30 09:07:56 -07:00
Martin Diehl 457f9aa4e3 prospector found duplicated key 2019-09-30 08:53:53 -07:00
Martin Diehl 3206ee04bc nodal displacements for grid solver
currently for non-MPI only
2019-09-27 20:38:02 -07:00
Martin Diehl 970d172160 correct message 2019-09-27 17:52:01 -07:00
Martin Diehl ad83c8541d same names as in python 2019-09-20 17:18:09 -07:00
Martin Diehl fb61899c5f seems that testing has Marc 2018.1 already 2019-09-20 20:54:30 +02:00
Martin Diehl 0b6620bfb7 Merge branch 'development' into MiscImprovements
F***ing commits to development!
2019-09-20 07:40:52 -07:00
Martin Diehl 4b2263bebe conversion to float causes issues
test only current version of MSC.Marc
2019-09-20 03:21:53 +02:00
Yang Su 6fdab024b6 ensure that integer inputs to Rotation.fromX() translate into float quantities 2019-09-19 17:03:31 -04:00
Martin Diehl 7fd4b8bff6 more prospector hints 2019-09-19 12:51:16 -07:00
Martin Diehl f1f88610dd documenting 2019-09-19 12:32:15 -07:00
Martin Diehl 2e25a03d13 adopting to new prospector 2019-09-19 11:56:58 -07:00
Martin Diehl 35a009f513 prospector complaind
help details were anyway pretty useless
2019-09-19 11:41:41 -07:00
Martin Diehl 32639caec2 better readable 2019-09-19 11:12:44 -07:00
Martin Diehl bf7db26680 Merge branch 'even-more-HDF5-postprocessing' into MiscImprovements 2019-09-19 10:49:14 -07:00
Philip Eisenlohr 76b08e10bd following stricter Python docstring standards 2019-09-18 21:43:43 -04:00
Martin Diehl 4994c86e67 bugfix: hard-wired keyword resulted in missing materialpoint results 2019-09-16 13:31:49 -07:00
Martin Diehl ee1327c519 [skip ci] typo 2019-09-16 11:21:06 -07:00
Martin Diehl 28bb92021d avoid code duplication 2019-09-16 11:04:05 -07:00
Martin Diehl 980c02b0c3 selected increments by simulation time 2019-09-15 20:19:14 -07:00
Martin Diehl 86fb0a7942 time info needed for filtering of increments 2019-09-15 20:04:52 -07:00
Martin Diehl b3b710c848 polishing 2019-09-15 19:56:07 -07:00
Martin Diehl 4cedcee0b4 handling of increments follows handling of other 'visible'-items 2019-09-15 17:08:03 -07:00
Martin Diehl f6ac8c995f simplified and selected better names 2019-09-15 16:00:19 -07:00
Martin Diehl c76d4d3f87 avoid unneeded arguments 2019-09-15 15:24:23 -07:00
Martin Diehl 88eba27cec avoid name duplication + polishing 2019-09-15 15:10:32 -07:00
Martin Diehl 04aefa84bc more appropriate names 2019-09-15 15:02:16 -07:00
Martin Diehl d413aef7c3 functionality for general calculations on datasets
currently limited to vectorized expressions.
2019-09-14 12:00:23 -07:00
Martin Diehl 8251725bce WIP: different norm types 2019-09-14 10:53:33 -07:00
Martin Diehl e4e9c5f558 support glob matching
more flexibility in selecting active datasets and groups
2019-09-14 09:55:42 -07:00
Martin Diehl b85ac11c49 implemented ideas from discussion with Philip
group matching unified and with wildcard support
time step handling should become more convenient (WIP)
add_norm can not compute abs of scalar, added function for that
general polishing here and there
2019-09-14 09:07:23 -07:00
Martin Diehl c13db4b3ca renaming
on_air/active are not clear. visible seems to be the most appropriate
name
2019-09-13 21:49:22 -07:00
Martin Diehl 898f53295d iter functions for groups
restore original selection after iterating (i.e. temp setting of active)

polishing: correct names and more details for HDF5 meta data
2019-09-13 21:14:52 -07:00
Martin Diehl 69462f8190 polished
strain calculation agrees up to 1e-4 with results from addStrainTensors.
Not too exciting, but ok
2019-09-13 19:37:25 -07:00
Martin Diehl 38f6609ad7 high level functions for selecting output
tested Cauchy stress calculation (comparison with addCauchy.py)
2019-09-13 18:36:06 -07:00
Martin Diehl c5006e264b handling prospector complaints 2019-09-13 16:07:39 -07:00
Martin Diehl 002383afc2 solved problem with postprocessing
- to not 'try' with h5py library, it might have another 'try'. Check
explicitly for empty argument

also some polishing
2019-09-13 16:01:30 -07:00
Martin Diehl b2b625af3e notes from discussion with Philip 2019-09-13 15:17:46 -07:00
Martin Diehl f83a167414 file mode for high level funtion not useful 2019-09-13 09:49:30 -07:00
Martin Diehl 6f008c5d5f rewrite pointwise add function
- all vectorized: Much faster
- passing in all relevant information allows to do sanity checks and add
useful meta data in HDF5
- improved readability
2019-09-13 06:02:42 -07:00
Martin Diehl 3db3e9e762 preparing for use of optional arguments to function 2019-09-11 21:20:14 -07:00
Martin Diehl de313269d9 bugfix 2019-09-11 18:54:54 -07:00
Martin Diehl 953ba53211 adjusting for strict prospector checking 2019-09-11 18:22:33 -07:00
Martin Diehl a6c69a744b do operations vectorized 2019-09-11 17:57:24 -07:00
Martin Diehl 462bb07efd Merge branch 'development' into even-more-HDF5-postprocessing 2019-09-11 16:29:44 -07:00
Martin Diehl bc893762ec no need to inverse a rotation, transpose is faster 2019-09-11 07:29:34 -07:00
Martin Diehl fa2c100d6a need to update microstructure to get grid update 2019-09-04 20:20:55 -07:00
Martin Diehl f415a8cad2 Merge branch 'PythonProspectorRules' into even-more-HDF5-postprocessing 2019-09-04 14:23:07 -07:00
Martin Diehl 28c11cc373 bugfix
-update function was resetting size if not given
-dim does not work an all terminals, therefore also emph new values in
addition to dim old ones
2019-09-04 11:14:44 -07:00
Martin Diehl ef285b482f more references + citation style correction 2019-09-04 08:55:05 -07:00
Martin Diehl 6f07a20919 not sure what this code was intended to do 2019-09-03 17:23:26 -07:00
Martin Diehl 3657f81c59 documenting (in accordance with new prospector rules) 2019-09-03 17:18:06 -07:00
Martin Diehl a428a924eb DAMASK default citation style 2019-09-03 16:34:02 -07:00
Martin Diehl 97fc8a4029 following python3 recommendations 2019-09-03 15:44:28 -07:00
Martin Diehl 234019bb4d dummy stuff not needed 2019-09-03 15:41:16 -07:00
Martin Diehl b0d3615d67 more detailed documentation 2019-09-03 15:32:01 -07:00
Martin Diehl 7d48764999 added documentation and references 2019-09-03 15:25:25 -07:00
Martin Diehl a073f36471 update for solver wrappers 2019-09-03 09:48:42 -07:00
Martin Diehl fea16327ac now properly escaped 2019-09-02 23:42:34 -07:00
Martin Diehl d84cef4fab pep8: W605 / invalid escape sequence '\ ' seems to be a false positive 2019-09-02 23:37:52 -07:00
Martin Diehl 9cf4f9537e documenting 2019-09-02 23:23:46 -07:00
Martin Diehl ba395977db adjusting to new prospector 2019-09-02 11:09:03 -07:00
Martin Diehl 34b3beda27 DefaultMap needed for newer paraview 2019-09-02 10:51:32 -07:00
Martin Diehl c51cf8d506 transferring post processing capabilities 2019-07-15 13:55:14 -07:00
Martin Diehl b6bb8a4650 simple strain calculation for DADF5
further enhancement requires to give optional arguments to
add_genericpontwise
2019-07-06 21:41:29 -07:00
Martin Diehl b6830b3ac1 Merge branch 'development' into even-more-HDF5-postprocessing 2019-06-14 10:28:22 +02:00
Martin Diehl cede188e76 enable to explicitly set the environment
required for running MPI processes when mpi4py is imported
2019-06-07 17:51:27 +02:00
Martin Diehl 1186bd16f5 Merge branch 'development' into even-more-HDF5-postprocessing 2019-06-04 22:39:10 +02:00
Philip Eisenlohr dff690611e fixed origin bug in VTK; VTK can be float; size defaults to 1 as longest dimension 2019-06-03 13:29:30 -04:00
Martin Diehl bf27505faa Merge branch 'development' into geometry-class 2019-05-31 16:21:50 +02:00
Martin Diehl 37de73535d following PEP style guide 2019-05-30 20:08:39 +02:00
Martin Diehl 4cb0ba3803 not needed anymore 2019-05-30 19:26:41 +02:00
Martin Diehl 46f0ad052e direct support for vtk output
- geom_check can now handle multiple files
- microstructure index is stored as integer in vtk file
2019-05-30 15:35:45 +02:00
Martin Diehl b00581f1be less picky on allowed datatypes 2019-05-30 13:29:29 +02:00
Martin Diehl 931fa9d36a standardized and cleaned
-write to file if given
-type casting is done in the geom class
2019-05-30 10:20:07 +02:00
Martin Diehl f30eda0267 no need to loop over files
will procude the same file over and over again
2019-05-30 09:32:37 +02:00
Philip Eisenlohr 17168525b6 use srepr in __repr__ 2019-05-29 18:14:30 -06:00
Martin Diehl 6e790e845a correct rescaling 2019-05-29 19:36:02 +02:00
Martin Diehl 669ca82ce1 formatted return message also on interactive shells 2019-05-28 09:05:10 +02:00
Philip Eisenlohr 1f56ac6a4a streamlining and bugfixing of geom-class 2019-05-27 22:45:34 -06:00
Martin Diehl b69f0efbbc improved and simplified reporting 2019-05-27 22:00:26 +02:00
Martin Diehl 615a4ab40f keep float datatype
based on the assumption, that no mixed float/int data is stored
2019-05-27 09:56:15 +02:00
Martin Diehl 6e06764e2d using (enhanced) central functionality 2019-05-27 08:38:02 +02:00
Martin Diehl b5cec797c0 cleaned 2019-05-26 23:03:31 +02:00
Martin Diehl c8dfba89e5 using class
still a very complex script
2019-05-26 22:49:05 +02:00