Commit Graph

491 Commits

Author SHA1 Message Date
Martin Diehl 0c7f4e690a fixed reference, still not 100% sure if everything is correct, but apparently the test never run 2015-09-12 16:30:28 +00:00
Martin Diehl c53bf02fea changed back to old behavior 2015-09-11 15:38:03 +00:00
Philip Eisenlohr c69e7ec149 switched conjugation to apply to symmetric equivalents instead of incoming quaternion.
passing-down of degree option handled directly.
2015-09-09 22:43:56 +00:00
Martin Diehl 1c164574ac more fixes following new possibilities of ascii table 2015-09-08 19:42:14 +00:00
Martin Diehl 4e9b27b0ce failure in last commit, using standard keyword eulerangles instead of eulers 2015-09-08 18:48:58 +00:00
Martin Diehl dad0fdfb85 still needed 2015-09-05 14:59:52 +00:00
Martin Diehl 45a3568b40 bugfix for last commit 2015-09-05 14:46:57 +00:00
Chen Zhang b4768013a0 fix output error in output geom file. 2015-08-26 16:39:33 +00:00
Philip Eisenlohr 00b8660203 redundant.
functionality available in “geom_fromTable”…
2015-08-20 19:46:11 +00:00
Philip Eisenlohr c85306257d redundant.
improved functionality now via “ang_toTable” and “geom_fromTable”…
2015-08-20 19:44:17 +00:00
Philip Eisenlohr 63d5506388 adopting further simplifications provided through ASCIItable class. 2015-08-20 19:42:05 +00:00
Philip Eisenlohr 05a8124d82 simplified rescaling interpretation 2015-08-19 18:30:50 +00:00
Martin Diehl 324c5b36d3 restructured to get help even without mentat release 2015-08-18 16:39:47 +00:00
Tias Maiti befd6aa7ff fixed stderr output (croaking..) as per new ASCII table style 2015-08-18 04:33:45 +00:00
Tias Maiti 419a612d0e updated to new ASCII table style 2015-08-18 04:32:19 +00:00
Philip Eisenlohr 1976cf44c1 fixed os.path.splitext bug when using STDIN input 2015-08-12 21:56:37 +00:00
Philip Eisenlohr dfbd2fd013 fixed bug for STDIN processing 2015-08-12 21:28:07 +00:00
Philip Eisenlohr 9ee49b2c3b adopted recent changes to API in ASCIItable.
removed Voronoi method from core module.
fixed buggy Laguerre tessellation (wrong seed scaling, wrong x,y,z order)
2015-08-12 20:55:53 +00:00
Philip Eisenlohr 8217fdb115 adopted recent changes to API in ASCIItable. 2015-08-12 18:56:40 +00:00
Martin Diehl 31a6ac328d adjusted to new ASCII table style and bugfix 2015-08-12 18:53:39 +00:00
Philip Eisenlohr cd70ec5a38 adopted recent changes to API in ASCIItable. 2015-08-12 18:43:11 +00:00
Philip Eisenlohr cd9a802a2b adoption of recent API change in ASCIItable. 2015-08-12 18:09:40 +00:00
Philip Eisenlohr 5dad5df588 adoption of recent API change in ASCIItable. 2015-08-12 17:47:38 +00:00
Philip Eisenlohr 3097c87bea adoption of recent API change in ASCIItable. 2015-08-12 17:43:49 +00:00
Philip Eisenlohr 57dfa6a87e added fall-back to non-multithreading execution when using only single CPU. 2015-08-08 21:43:21 +00:00
Philip Eisenlohr 31f6d22d89 added option (force) to override selective seeding check. 2015-08-08 20:20:53 +00:00
Philip Eisenlohr 889a5807bb more conservative (and probably appropriate) variance default for Laguerre tessellations: 1.0 —> 0.1 2015-08-08 20:12:26 +00:00
Philip Eisenlohr bbeb210708 functionality now provided by more general “geom_fromImage” 2015-08-07 22:16:40 +00:00
Philip Eisenlohr 9729c03c00 removed obsolete code. added croak about number of cpus used. 2015-08-07 22:15:24 +00:00
Tias Maiti 4ed56a8ba6 removed debugging print statements 2015-08-07 20:52:57 +00:00
Philip Eisenlohr d4e748b654 outsourced multiple repetitive functions into ASCIItable class.
changed ASCIItable API from file-handles to filenames.

adopted these changes in pre and post processing scripts.

unified behavior and look.

fixed bugs here and there.

improved functionality.
2015-08-07 19:03:26 +00:00
Tias Maiti de90a04374 assign indices from microstructure column if present for laguerre tessellation 2015-07-30 04:42:00 +00:00
Tias Maiti 599bb768ef index microstructure from 1 instead of zero for laguerre tessellation 2015-07-28 22:15:32 +00:00
Haiming Zhang b69a422529 Generate the geometry description of a directional non-equiaxed grain structure, e.g., RVE cutted from a cold-rolling sheet. '--reduct' specifies the thickness reduction after rolling, and '-n' specified the number of samples cutted, e.g., n=5, then five samples will be cutted from the sheet along theta = 0 (the rolling direction), theta = 22.5, theta = 45, theta = 67.5, and theta = 90 (the transversal direction). 2015-07-24 14:12:10 +00:00
Philip Eisenlohr fc0e29c45b removed erroneous rescaling of Laguerre weights. 2015-07-22 22:34:40 +00:00
Haiming Zhang b15f68905f fig a bug. 2015-07-21 15:38:12 +00:00
Haiming Zhang 331a4c5775 add the number of the re-constructed orientation into the name of output files. 2015-07-18 17:25:05 +00:00
Philip Eisenlohr d676fdc1ce fixed default behavior of symmetry. used to advertise having cubic symmetry but was using []. 2015-07-10 16:58:30 +00:00
Philip Eisenlohr fcdd80bba3 switched order of command line options to make consequence of “degrees” switch more clear, i.e., it affects both the tolerance and Euler angles… 2015-06-29 09:40:44 +00:00
Philip Eisenlohr 129026662c fixed small bugs.
modernized file treatment.
improved Laguerre speed by a factor of 2 due to precalculating the squared weights.
2015-06-27 08:41:08 +00:00
Philip Eisenlohr e310763c52 Novel script to generate geometry description and material configuration from position, phase, and orientation data in an ASCIItable.
Can deal with phase-specific lattice symmetry, condenses orientations within a given angular threshold, and might be used in lieu of geom_fromANG when replacing the ANG header.
2015-06-21 11:56:05 +00:00
Tias Maiti acad1246f3 fixed wrong variable name for quaternions as rotation options 2015-06-19 04:38:00 +00:00
Philip Eisenlohr d57c7568dd simplified processing of ASCIItables by utilizing the improved class methods.
modernized file looping.
updated help.
2015-06-16 05:42:11 +00:00
Luv Sharma a5b3e9d64c typos fixed 2015-06-14 05:51:53 +00:00
Haiming Zhang c7f59c6482 change angle into radian. 2015-06-11 17:57:23 +00:00
Haiming Zhang bfe76794af add the output of ".ang" file 2015-06-11 16:50:29 +00:00
Yannick Naunheim c45a0ce55e improved stability for geom_fromAng. no longer depends on correct header information.
geom_fromVPSC with correct size determination now
2015-06-11 10:06:53 +00:00
Philip Eisenlohr b7f98c00d6 input file handling now save for large file count.
streamlining of input column detection.
fixed bug iterating through “grainIDs” instead of “grain”.
proper closing and dismissal of output table file.
2015-06-05 11:50:15 +00:00
Philip Eisenlohr 5adbe74b10 changed library function name table.labels_index() to table.label_index() 2015-06-05 11:44:17 +00:00
Philip Eisenlohr f50927b99f Create seeds file by poking at 45 degree through given geom file.
Mimics APS Beamline 34-ID-E DAXM poking.
2015-06-05 11:41:44 +00:00
Philip Eisenlohr 6eb83530b8 streamlining 2015-06-05 11:34:41 +00:00
Tias Maiti 147cc91496 some polishing to laguerre tessellation 2015-05-28 20:57:03 +00:00
Tias Maiti c5349ab041 some polishing for option parser 2015-05-26 20:22:11 +00:00
Tias Maiti 73c6bd767f added options for selective seed picking based on Mitchell’s best candidate algorithm for more uniformly distributed (spatially) seeds points 2015-05-26 20:13:35 +00:00
Martin Diehl 737e474cea consistent handling of random number per file and always reporting as comment, fix for permuteData needed because of new asciitable behavior 2015-05-22 05:56:49 +00:00
Sehar Abbas 7af176d13f introduced option to set microstructure starting index 2015-05-21 10:04:52 +00:00
Martin Diehl d70b903d1b output follows standard way, test need to ignore header 2015-05-20 21:26:49 +00:00
Martin Diehl 056ba0f2e4 reverted back to hard-to-read but working if else statement 2015-05-20 19:40:11 +00:00
Martin Diehl d99f13a49f now operating on file, only on stdout if input comes from stdin 2015-05-20 19:07:52 +00:00
Martin Diehl cd94469ea0 VPSC file format not used, if needed convert first to geom 2015-05-18 18:59:41 +00:00
Martin Diehl 76d456ee49 fixed rename 2015-05-18 14:48:25 +00:00
Martin Diehl 7775b254bd updated tests to follow new addStrainTensors syntax, check in seeds_fromTable.py was wrong with simplified default 2015-05-18 08:42:14 +00:00
Martin Diehl cddbd53789 reads better 2015-05-16 14:32:32 +00:00
Martin Diehl e45dcb7948 more readable if-else oneliner 2015-05-15 13:38:27 +00:00
Martin Diehl fa1368204d fixed bug in asciitable when updating labels for readArray, fixed checking for euler angels presence in tessellation, improved help 2015-05-14 17:07:50 +00:00
Martin Diehl 7ea350b90e corrected default for multiple arguments of fixed length (tuple, not list) 2015-05-14 10:00:56 +00:00
Martin Diehl 4899b3df0a found some unused (forgotten debug) statements 2015-05-11 20:09:49 +00:00
Martin Diehl 6f112b46b5 can be done with TSL OIM in current versions 2015-05-10 15:56:59 +00:00
Martin Diehl b60f868a76 renumbering asciitable when readArray for selected columns only
test no longer for deleteColumn
2015-05-10 11:29:11 +00:00
Martin Diehl d0180540eb fixed bugs introduced with last commit and restored capability of handling legacy seeds format 2015-05-08 05:02:44 +00:00
Tias Maiti ce0675f359 added options for laguerrre tessellation 2015-05-02 07:41:14 +00:00
Haiming Zhang afe7225357 add the option of exporting '.ctf' format file. 2015-04-28 18:09:07 +00:00
Haiming Zhang f8e06b488a make the script consistent with other scripts:
1. use new file handles
2. add scriptID and version
2015-04-28 17:47:06 +00:00
Martin Diehl 906c3f63a1 updated hybridIA sampling to work with new format
cropLinearODF is not working for the new format, but filterTable should be able to do the task
2015-04-27 05:30:29 +00:00
Martin Diehl b9c5edf7ab changed to standard file and output handling 2015-04-22 18:57:44 +00:00
Martin Diehl 2e6bbe887e changed header in seeds file from 'x,y,z' to '1..3_coords'.
scripts now use the header information and do not rely on coordinates being in the first three columns
2015-04-22 18:44:54 +00:00
Martin Diehl 0cec85ac63 corrected order of output, config file output is not supported yet 2015-04-21 19:37:03 +00:00
Martin Diehl 4581e22a0f change reading in to standard loop over files
getting bins now from header information
format of linearODF now standard ASCII table style with header/keyword/label
2015-04-20 14:22:45 +00:00
Martin Diehl f43afa13d8 simple script to generate geom file from stacked tiff images. 2015-04-20 12:57:45 +00:00
Martin Diehl f5762209dc changed 'range' keyword to 'limit', now using proper ASCII table (with column 'intensity') for linearODF
hybridIO_linODFsampling simplified
2015-04-15 14:37:46 +00:00
Martin Diehl 64764b0902 introduced moving of multiple seeds at the same time
introduced more suitable check for convergence of the first bin. Improvements in bringing seeds with a size outside the range of the target closer are no longer invisible
2015-04-14 12:42:35 +00:00
Martin Diehl d008b566b4 ensure to bring all seeds within target range 2015-04-10 20:47:20 +00:00
Martin Diehl 9d3cd8f997 added options do define number of maximum seeds to move simulateneously 2015-04-10 18:08:17 +00:00
Martin Diehl 4aa63e1ab9 handling of seeds files without microstructure (but eulerangles) 2015-04-10 16:59:08 +00:00
Martin Diehl 09bfd1e18e more verbose error handling for euler angles limits
ensuring that ROUNDED euler angles are not above the limits
2015-04-10 14:50:23 +00:00
Martin Diehl e01e270300 improved search for double microstructures (was N^2 bogosort) in geom_fromAng and introduced it in geom_fromVPSC 2015-04-10 12:57:25 +00:00
Martin Diehl 92a67e1a9d geom_fromAng.py crashed when found empty line (eg. at the end of the file), now fixed 2015-04-01 14:42:25 +00:00
Martin Diehl 004375cc79 removed table rewind causing problem with STDIN/STDOUT 2015-03-27 13:57:34 +00:00
Martin Diehl 69b8e02a3a removed unwanted ASCII table data rewind causing problem for STDIN 2015-03-26 21:15:59 +00:00
Martin Diehl 643f7fe934 some comments 2015-03-26 05:04:12 +00:00
Franz Roters 4b19b74d11 number of intervals is limit/delta not limit/delta -1 2015-03-13 08:39:55 +00:00
Haiming Zhang 37e40fdf79 Keep consistent with the new file: example.linearODF 2015-03-06 16:21:05 +00:00
Haiming Zhang 5d9abc16e8 the number of grains starts with one. 2015-03-05 20:16:17 +00:00
Haiming Zhang aeb468254d missing file.close() 2015-03-05 19:12:07 +00:00
Haiming Zhang 4579a696e8 use OptionParse to parse the command-line options, add help information,
add the output of material.config file.
2015-03-05 19:01:31 +00:00
Haiming Zhang d188f35c17 use OptionParse to parse the command-line options, add help information, format the header of output file, now the output file can be used by hydribIA_linODFsampling.py directly 2015-03-05 17:04:16 +00:00
Martin Diehl f1df6cf40f copied some stcopied some scripts from the Code folder that are of interest for DAMASK 2015-03-05 10:05:00 +00:00
Chen Zhang 8c91d174fa remove some debugging print;
add meshgrid2, but stick with list comprehension since it is actually faster.
2015-03-02 16:20:47 +00:00
Tias Maiti 0077177c05 some polishing (numpy —> np, theTable —> table) 2015-03-02 05:06:29 +00:00
Chen Zhang 0d7355a49f correct help information. 2015-02-27 23:08:48 +00:00
Chen Zhang 1742725963 interpolate microstructure using Delaunay triangulation and Barycentric interpolation. 2015-02-27 22:59:09 +00:00
Martin Diehl 425251ae2b fixed bug: theTable -> table 2015-02-14 11:23:50 +00:00
Martin Diehl 40a792d785 fixed bug in consistency check 2015-02-10 13:49:47 +00:00
Martin Diehl 63434c2ddb corrected error checking for correct type 2015-02-09 08:57:14 +00:00
Martin Diehl 7edd209ce4 corrected wrong name in add..., more verbose error checking for geom_from... 2015-02-07 22:22:28 +00:00
Martin Diehl e4a94aa72b put changes on algorithm from geom_fromEuclideanDistance into addEuclideanDistance 2015-02-07 17:11:46 +00:00
Martin Diehl 4772efbc45 fixed syntax error 2015-01-23 10:11:12 +00:00
Martin Diehl 440263f2f0 simplified, removed deprecated synonyms 2015-01-22 09:03:18 +00:00
Martin Diehl ed6b4fe50a fixed issues when having grains and eulers 2015-01-13 16:04:49 +00:00
Martin Diehl 8dea16c07f fixed wrong assignment of phase and made orientation comparison robust 2014-12-20 12:42:21 +00:00
Martin Diehl 9ac62e42df added possibility to specify number of bins to be sorted in advance to current cleared stage 2014-12-18 18:03:36 +00:00
Martin Diehl f8ce57abc8 removed aliases 'resolution' and 'dimension' for 'grid' and 'size' because some scripts did not have it anyway and the rename happened quite a while ago 2014-12-08 08:48:55 +00:00
Martin Diehl c067d0dc69 fixed wrong periodicity treatment 2014-12-05 10:35:56 +00:00
Luv Sharma 30920801aa extended for 2D, finds the bounding edges and assigns them 'physical' attribute. 2014-12-04 11:33:06 +00:00
Martin Diehl 47685ac7c4 added output of script ID do material.config 2014-12-03 10:09:47 +00:00
Martin Diehl 590106b889 added possibility to add randomly distributed second phase (index = indexGiven+1) 2014-12-02 22:22:11 +00:00
Philip Eisenlohr 3cfabe3b83 standardized script name reporting 2014-11-18 15:31:39 +00:00
Martin Diehl b656113b11 added missing string import in marc_addUserOutput (introduced with rev 3718) and removed unwanted imports and introduce use of damask.extendableParser in some other scripts 2014-11-18 08:00:45 +00:00
Martin Diehl 409a75c964 fixed 2 small flaws in geom_fromAng, corrected stringID and stringName in all remaining files in 'pre' 2014-11-16 21:44:46 +00:00
Philip Eisenlohr 6a3546cee2 script to produce ASCIItable from geom dataset.
contains best-practice for looping over multiple input files (to avoid error caused by too many open file handles!)
2014-11-14 15:16:00 +00:00
Philip Eisenlohr deee3a175a polishing and simplifications 2014-11-14 14:53:48 +00:00
Martin Diehl 733e85f6e6 fixed bug in material.config when do not compress the data. Thanks to Noriki for figuring out 2014-11-14 13:53:55 +00:00
Martin Diehl 2d2eb4e001 using extendable option, numpy as np, etc. 2014-11-07 11:13:14 +00:00
Martin Diehl 047042ad9f using extendable option, numpy as np, etc. 2014-11-07 11:07:03 +00:00
Tias Maiti 7d6670d4cf fixed table —> theTable flaw in output finalization 2014-11-05 22:17:06 +00:00
Philip Eisenlohr 52160385a6 alternative expression to parse script filename (scriptID excluding file extension). 2014-11-05 22:05:37 +00:00
Philip Eisenlohr 9345640dfd mainly polished for “numpy as np”. added alternative expression to parse script filename (excluding file extension). 2014-11-05 22:04:59 +00:00
Philip Eisenlohr 35f8b9786e changed way to sample grid positions when placing primitive object. Should be somewhat more efficient now. 2014-11-05 22:02:40 +00:00
Philip Eisenlohr f7da804927 changed file handling to allow for serial processing of large file numbers. 2014-11-05 22:01:11 +00:00
Pratheek Shanthraj e779c2e1e6 specify mesh size 2014-10-21 14:42:13 +00:00
Pratheek Shanthraj 975e42b132 specify which surface(s) you want to tag 2014-10-21 13:57:17 +00:00
Luv Sharma 8dd575cdbe now making use of parser options for input arguments 2014-10-17 11:51:22 +00:00
Luv Sharma 0193578540 now appending the bounding surface information to the gmsh geometry file 2014-10-16 17:23:17 +00:00
Luv Sharma 7e0c6f420b added shebang script to make executable, some properties and few improvements. Now giving the bounding surfaces. 2014-10-16 15:53:46 +00:00
Luv Sharma ff0f619015 started to write a script for finding bounding surfaces from gmsh geo file. 2014-10-16 14:07:25 +00:00
Martin Diehl 5e16cdd14f added support for multiple entries per line 2014-10-13 13:58:26 +00:00
Martin Diehl e1530afac7 test for geom_fromTable (does not work for empty black or whitelist) 2014-10-13 09:54:01 +00:00
Martin Diehl f4de982182 svn caused trouble due to rename, again some missing files 2014-10-10 12:11:10 +00:00
Martin Diehl 46d67f63d8 added test for converter from Ricardo's files 2014-10-10 08:54:48 +00:00
Martin Diehl 57e522566a updated python style 2014-10-09 17:03:06 +00:00
Martin Diehl 47c8bfeacb commented code 2014-10-09 11:01:07 +00:00
Martin Diehl 033a275d82 a bunch of small changes. deleted compiled FFTW libraries 2014-10-02 21:27:03 +00:00
Philip Eisenlohr bfe20a3af8 added $Id$ property and LF line endings. 2014-09-29 15:57:31 +00:00
Martin Diehl f2d9d66129 improved readibility, fixed negative coordinates, improved output 2014-09-29 15:55:17 +00:00
Martin Diehl ff475f1459 first draft of a constraint voronoi tessellation to match grain distribution 2014-09-29 10:19:49 +00:00
Philip Eisenlohr b85797c109 significant speed improvement for large grids.
polished messages and fixed error reporting bug.
2014-09-24 23:47:52 +00:00
Tias Maiti 14530b0a76 fixed bug 'the table' instead of 'table' 2014-09-19 15:24:59 +00:00
Martin Diehl afb9a2186b removed explicit default setting: type='string' and action='store' 2014-09-12 14:14:55 +00:00
Martin Diehl 5f986f3d54 updated to contain latest python improvements 2014-09-10 16:14:37 +00:00
Tias Maiti e286cf4c74 fixed bug "theTable" instead of "table" 2014-09-03 14:53:12 +00:00