Martin Diehl
3824b683bc
removed extra cython file, symlink to standard orientation instead
2016-03-24 15:06:04 +01:00
Martin Diehl
c73382e51f
further cleaning
2016-03-24 14:36:24 +01:00
Martin Diehl
d765282165
save fortran code
2016-03-24 14:20:18 +01:00
Martin Diehl
143a868dad
files resulting from compilation should not be part of the repository
2016-03-23 11:05:00 +01:00
Martin Diehl
fafedd5cd6
Merge branch 'LargeFiles' into development
2016-03-22 15:45:42 +01:00
Philip Eisenlohr
1b22b6e4ee
replaced variable interpolation into strings by "%" with .format() method
2016-03-21 10:26:30 -04:00
Philip Eisenlohr
8cd1f027b3
bug fixing.
2016-03-21 08:51:56 -04:00
Philip Eisenlohr
01a5343ca2
added another backgroundMessage animation. generally cleaned code a slight bit.
2016-03-20 20:58:10 -04:00
Philip Eisenlohr
a41cd3df40
added "strict" option to reading microstructure from geom file. will now complain if data mismatches with grid.
2016-03-20 16:46:35 -04:00
Zhuowen Zhao
d42f8d5fd4
added possibility to read real numbers as microstructure indices (not only integers)
2016-03-17 17:42:05 -04:00
Martin Diehl
7a4e9856c5
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development
2016-03-14 18:47:54 +01:00
Martin Diehl
fdd4ab483e
core.so is not part of the repo
2016-03-14 05:51:52 +01:00
Martin Diehl
2dbdf9a72f
all symbols need to be representable in unicode
2016-03-13 18:21:25 +01:00
Martin Diehl
efde4d363d
changed encoding
2016-03-07 09:56:14 +01:00
Martin Diehl
a4bbdd5ecb
further commenting, removing not used variables and code (marc2vtk)
2016-03-04 19:06:36 +01:00
Martin Diehl
d1e8f69857
added docstrings etc
2016-03-04 17:55:11 +01:00
Martin Diehl
24391b5398
checked with prospector, adopted mainly docstrings
2016-03-04 17:53:55 +01:00
Martin Diehl
9a405ef41b
using more stable way of handling unicode printing, cleaning unicode delete from output of execute
2016-03-04 17:23:38 +01:00
Martin Diehl
75480bc677
modified background threading because using it in postResults led to an dead lock.
...
rest modifications are just style
2016-03-04 15:22:01 +01:00
Martin Diehl
4d8aad36f1
first round of libraries
2016-03-01 23:02:47 +01:00
Martin Diehl
2a3e42a906
prevent import errors (e.g. when using Abaqus, having it's own python without scipy)
2016-02-02 23:24:44 +01:00
Martin Diehl
4fa2a58a19
needed to adopt to new test env (not perfect yet, but keeps things going)
2016-01-29 19:21:04 +01:00
Martin Diehl
f2c7eea161
git compatible way of version handling for Fortran and Python
2016-01-27 16:48:27 +00:00
Martin Diehl
81a8b2c4ed
color lib for output
2016-01-05 18:17:55 +00:00
Martin Diehl
120b2b8bd2
added test for hybridIA
2015-12-22 22:17:15 +00:00
Martin Diehl
0cfe35dfe6
consistently removing leading and trailing whitespace
2015-12-22 15:59:01 +00:00
Martin Diehl
bbb00b30e8
using numpy random
2015-12-17 21:26:59 +00:00
Martin Diehl
37aa559bd4
fixed missing structure type in material.config, small changes in the other code
2015-12-15 14:30:17 +00:00
Martin Diehl
97b96f13b2
updated installation for testing
2015-12-14 21:31:47 +00:00
Martin Diehl
1f08d0fbf6
verbose option for compareTables, new option to filter (now before and after normalizing)
2015-12-11 17:23:36 +00:00
Martin Diehl
c3dc05c53a
continued work on test class and adopted some tests
2015-12-04 22:40:39 +00:00
Philip Eisenlohr
a18a1066e2
started to rework test class. Martin probably needs to check and continue improving on this.
2015-12-03 21:52:03 +00:00
Philip Eisenlohr
fc2d79e17b
added more animations…
2015-12-02 23:08:18 +00:00
Martin Diehl
0e76ef85c1
checking return code in util.exececute, cleaning makefile, deleted dummy docs
2015-12-02 13:21:17 +00:00
Martin Diehl
0ffcb7fdaf
cleaning
2015-12-01 16:37:20 +00:00
Martin Diehl
161e637ba6
not needed any more (at more usefull position in damask.util)
2015-11-30 16:30:35 +00:00
Philip Eisenlohr
38c536b6b7
improved unicode handling.
...
background message is now stoppable.
background message not “jumping” (multiplying) anymore.
2015-11-20 16:15:34 +00:00
Philip Eisenlohr
30a481f152
fixed forgotten symmetry property for average orientation.
2015-11-14 04:36:46 +00:00
Philip Eisenlohr
2b5cb08c4d
new method “head_putGeom” translates info-array into geom-description
2015-11-14 01:48:16 +00:00
Philip Eisenlohr
6211a9faad
symQuats-related functions can take optional argument to downselect return values.
...
“getAverageOrientations” —> “average” and takes optional multiplicities of orientations in list.
2015-11-14 01:46:44 +00:00
Martin Diehl
b700721905
comment on literature
2015-11-08 11:44:46 +00:00
Philip Eisenlohr
519484233c
can now deal with “empty” header line.
...
example:
# some comment
# further stuff
1_dim 2_dim
34 33
1 22
would work with “labeled”=True and stores the first two lines as “info”.
2015-11-03 21:14:45 +00:00
Martin Diehl
4ac9ef602e
still trying to find a stable solution on all machines
2015-10-29 21:51:57 +00:00
Aritra Chakraborty
9ea0898cd9
corrected the convention added yesterday; “proper” and ‘improper” was the wrong way around. “proper = True ” considers the bigger (2 adjacent) SST. In general, an improper rotation is implicitly assumed when projecting a pole into the (single) SST, hence this is termed “improper” now.
2015-10-23 20:16:01 +00:00
Philip Eisenlohr
15963391aa
inSST and inversePole now can consider the secondary SST related to improper rotations. Secondary SST is immediately neighboring (positively rotated around Z).
2015-10-22 21:15:15 +00:00
Martin Diehl
31579b3f88
tolerances caused problems, introduced new funtionality based on np.allclose
2015-10-22 05:59:11 +00:00
Franz Roters
b676ed0085
support for Marc 2010 was dropped a long time ago
2015-10-20 13:32:48 +00:00
Franz Roters
a087eedd54
added support for Marc2014.2 (so far installed on maws14 only)
2015-10-20 13:25:59 +00:00
Martin Diehl
e72ae63873
geom canvas crashed for some parameters, now giving error message. table class now handles dismiss correctly
2015-10-14 21:35:56 +00:00
Philip Eisenlohr
7df8d95cd0
slightly cleaner way of dealing with disorientation calculation when axis not required to fall into SST.
2015-10-09 13:03:10 +00:00
Philip Eisenlohr
26f8f74310
undone np.unique of columns since this would introduce the unwanted side-effect of (messily) sorting columns. user expects to get sorting as provided through command line.
2015-10-09 12:55:30 +00:00
Martin Diehl
4c46d155ec
line continuation not needed
2015-10-09 10:24:17 +00:00
Martin Diehl
61090c955d
removed code doubling
2015-10-09 05:51:58 +00:00
Martin Diehl
851d2e1b2c
prevent to load columns more than once\n @Philip: OK?
2015-10-08 17:47:00 +00:00
Philip Eisenlohr
3b0dc374bb
now using ‘emph’ in reporting function instead of code doubling.
2015-10-07 01:07:56 +00:00
Philip Eisenlohr
801d57af4c
fixed buggy behavior caused by assigning string instead of single-item list to readBuffer.
2015-10-07 01:03:26 +00:00
Martin Diehl
6e05082133
might be needed in multicore env
2015-10-06 18:01:31 +00:00
Martin Diehl
95a8b54996
buggy behavior when read buffer contained string (len > 0, but no pop() method)
...
@Philip: please check if intended behavior
2015-10-06 16:19:37 +00:00
Philip Eisenlohr
e089e60202
transparently deal with one-dimensional array output
2015-09-30 18:44:54 +00:00
Philip Eisenlohr
b2243ae3c1
small polishing
2015-09-29 22:25:57 +00:00
Martin Diehl
948aa0c544
was missing in last commit
2015-09-24 10:01:15 +00:00
Philip Eisenlohr
2aa1073949
relocated “croak” and “report” functionality to here. needs to be altered in all scripts that still use the ASCIItable class for those…
2015-09-22 21:00:18 +00:00
Martin Diehl
6a3a0f3859
allow asciitable to use file handle instead of string (following e.g. numpy.genfromtxt)
2015-09-16 19:44:11 +00:00
Harsha Phukan
24bd3a6eee
added “non-strict” version to find disorientation, neglecting the search for axis falling into SST (has linear instead of quadratic effort).
2015-09-16 17:07:02 +00:00
Harsha Phukan
8a05584924
bg.message does not require symbol selection anymore—will pick random if nothing specified…
2015-09-15 19:02:00 +00:00
Martin Diehl
5f9fae1b75
simplified reporting using "emph"
2015-09-11 12:55:43 +00:00
Philip Eisenlohr
31bb27268c
removed dangerous property overload (.asQuaternion() —> .quaternion)
2015-09-09 22:37:18 +00:00
Tias Maiti
7495b33b68
label_dimension dropped indices >9 due to buggy string comparison…
2015-09-08 23:12:45 +00:00
Chen Zhang
ba418a5c97
reflect recent changes in orientation class
2015-09-03 16:50:49 +00:00
Tias Maiti
eb5ad7528f
fixed bug in asEulers() output in degrees
2015-08-29 23:22:32 +00:00
Martin Diehl
6848d83d13
behavior of IO_stringPos was unsafe in some situations, also took the chance to rename the variables used in its context to a more meaningful name.
...
functions in the core module are not used, including kdTree
2015-08-28 07:38:48 +00:00
Chen Zhang
f4145dd505
add numpy header location in the setup script.
2015-08-25 18:06:36 +00:00
Philip Eisenlohr
636eb8a087
multiple fixes and improvements.
...
1) asAngleAxis got “degrees” switch, fixed buggy output for negative angles, now angles are always non-negative.
2) removed rotateBys.
3) asEulers corrected for cases w==z or x==y.
4) added method symmetryQuats.
5) calculation of disorientation (finally) fixed, returns tuple (disorientation quaternion, index symA, index symB, boolean whether A—>B or B—>A).
2015-08-24 13:39:09 +00:00
Philip Eisenlohr
858fe7e897
prevent closing sys.stdin or sys.stdout
2015-08-24 00:40:52 +00:00
Philip Eisenlohr
7ceb7f7614
fixed problem when reading single label through data_readArray
2015-08-23 23:18:34 +00:00
Philip Eisenlohr
681b7f0831
added ‘emph’ method.
...
additional background message animations.
2015-08-22 17:02:49 +00:00
Philip Eisenlohr
6ba76c3832
introduced public line object holding currently read data line as string.
...
label_append now has option to overwrite (reset=True) labels that were read originally.
data_writeArray maintains full significant digit representation as default.
2015-08-20 19:38:06 +00:00
Martin Diehl
22c52fbd32
cleaned core module
2015-08-12 18:48:09 +00:00
Philip Eisenlohr
93dd9f5c09
bug fix regarding self.tmpext.
...
added check for access rights when overwriting original file.
2015-08-12 18:41:44 +00:00
Martin Diehl
a29240242b
standard name for numpy is np
2015-08-12 18:32:28 +00:00
Philip Eisenlohr
64515d7aca
simplified interface:
...
name == None: read from stdin
outname == None and not readonly mode: do in-place substitution of name (with transparent file renaming upon table.close)
2015-08-12 17:42:38 +00:00
Martin Diehl
f9348398ce
removed old file, added possibility to normalise euler angels to standard range, added svn properties
2015-08-12 15:15:33 +00:00
Martin Diehl
35863e0229
fixed averageDown and made it's test running
2015-08-12 13:43:05 +00:00
Martin Diehl
36caddcc24
adjusted to new ASCII table file handling
2015-08-12 12:51:47 +00:00
Chen Zhang
3991813595
fix syntax error regarding several static method
2015-08-10 21:08:00 +00:00
Philip Eisenlohr
d4e748b654
outsourced multiple repetitive functions into ASCIItable class.
...
changed ASCIItable API from file-handles to filenames.
adopted these changes in pre and post processing scripts.
unified behavior and look.
fixed bugs here and there.
improved functionality.
2015-08-07 19:03:26 +00:00
Chen Zhang
dfe0991134
adding property alias for Orientation class to simplify syntax.
2015-08-04 20:38:06 +00:00
Chen Zhang
1ec3639cf1
use pure python implementation of orientation class as default
2015-08-02 17:49:38 +00:00
Chen Zhang
fbb7f9b11b
remove deprecated function from math.f90
2015-07-29 20:49:42 +00:00
Chen Zhang
9287d6f15f
make the interface for Symmetry class compatible with pure python version.
2015-07-29 19:39:30 +00:00
Chen Zhang
5f74f3e95e
add Cython version of orientation module to provide faster orientation calculation.
2015-07-29 19:23:06 +00:00
Chen Zhang
70606770d0
correct two typos in Quaternion class
2015-07-28 20:10:27 +00:00
Chen Zhang
bfedf037c6
add asAngleAxis() to Orientation class
2015-07-22 21:49:24 +00:00
Chen Zhang
08f4495721
changed readArray default behavior to reading always scalars when columns are referenced by number
2015-07-21 20:44:40 +00:00
Philip Eisenlohr
c46e639a38
fixed bug preventing first line to be read when using readArray without labels.
2015-07-09 03:40:15 +00:00
Yannick Naunheim
5fe65bfcc3
corrected OR models and set up simple test to check them
2015-06-29 16:02:56 +00:00
Martin Diehl
50bcfe6e0d
possibility to give fixed seed to random orientation
2015-06-26 06:32:25 +00:00
Martin Diehl
6aaf074651
bug fix
2015-06-25 16:16:01 +00:00
Martin Diehl
f10dfa311a
fixed ORs
2015-06-25 12:00:08 +00:00
Philip Eisenlohr
2d8af638b0
added optional keyword `degrees´ to q.asEulers().
...
added methods inFZ, equivalentQuaternions, and equivalentOrientations to Orientation class.
general polishing…
2015-06-21 12:05:17 +00:00
Philip Eisenlohr
16edd1693d
now only trying to close input and output tables.
...
corrected buggy behavior in case no columns found in data_readArray.
2015-06-19 06:08:09 +00:00
Philip Eisenlohr
83547ce29f
condensed multiple import statements into general one at module start.
2015-06-15 15:36:58 +00:00
Philip Eisenlohr
66ce1d0b33
speed up for inversePole method. Now only performing symmetry equivalence when asked for SST.
2015-06-13 11:51:10 +00:00
Philip Eisenlohr
0efbd4b11f
added Colormap.color(fraction) function to interpolate a color from the colormap.
...
cleaned Colormap.export by now relying on new interpolation function.
2015-06-13 11:46:32 +00:00
Philip Eisenlohr
3d7dfba40a
syntax polishing
2015-06-13 11:43:34 +00:00
Martin Diehl
d894900c2e
added support for marc 2014:X
2015-06-11 18:19:52 +00:00
Philip Eisenlohr
48f31f13a6
label_index now transparently searches for “1_”+label if label itself not found.
...
added label_dimension method returning the dimension of the requested object, i.e. 1, 3, or 9 as typical outcomes.
2015-06-08 05:02:11 +00:00
Philip Eisenlohr
83d5686995
added check before trying to delete/dismiss file
2015-06-06 11:18:39 +00:00
Philip Eisenlohr
a8d61a29d6
added newlines at end of colormap.exports
2015-06-06 11:09:15 +00:00
Philip Eisenlohr
5adbe74b10
changed library function name table.labels_index() to table.label_index()
2015-06-05 11:44:17 +00:00
Tias Maiti
9d5ca8b631
orientation matrix shape checked in “ fromMatrix “ function
2015-05-28 21:52:05 +00:00
Philip Eisenlohr
58eb4fc301
transparent (3,3) reshape of matrix when generating orientation.
2015-05-27 18:56:18 +00:00
Harsha Phukan
c8d774f456
adopted math from Martin Baker to calculate quaternion from matrix representation.
2015-05-22 20:04:05 +00:00
Philip Eisenlohr
4bd44f8e43
better robustness against scalar arguments and “None”.
2015-05-21 21:53:54 +00:00
Philip Eisenlohr
99adf42f0f
improved robustness of labels_index determination.
...
fixed errors in data_readArray and improved functionality. Can now cope with list of columns. reads all valid columns returning list of invalid ones. updates table.labels accordingly.
2015-05-21 00:02:32 +00:00
Philip Eisenlohr
06f017effa
added possibility to dismiss (delete) output file upon closing an ASCIItable.
...
“None” labels are disregarded in labels_index() method.
2015-05-19 21:11:49 +00:00
Philip Eisenlohr
9f569d04c6
added “.close()” method to close input and output at the same time.
...
accept header only if space present between number and “head” string.
2015-05-19 20:35:56 +00:00
Martin Diehl
5d19e55eb4
corrected access by number
2015-05-15 13:35:50 +00:00
Martin Diehl
b30eba3919
introduced (untested) OR calculation
2015-05-15 12:44:48 +00:00
Martin Diehl
fa1368204d
fixed bug in asciitable when updating labels for readArray, fixed checking for euler angels presence in tessellation, improved help
2015-05-14 17:07:50 +00:00
Martin Diehl
b60f868a76
renumbering asciitable when readArray for selected columns only
...
test no longer for deleteColumn
2015-05-10 11:29:11 +00:00
Yannick Naunheim
88e16f9344
corrected Bain model
2015-05-08 14:45:59 +00:00
Yannick Naunheim
90ae536204
introduction of orientation-relationship (OR) models: Kurdjumov-Sachs (KS), Nishiyama and Wassermann (NW), Greninger-Troiano(GT), Bain
2015-05-08 14:14:44 +00:00
Martin Diehl
4448187c1e
functions have been removed in previous commit
2015-05-05 14:44:31 +00:00
Martin Diehl
9694d63874
introduced option mute output to screen
2015-04-22 18:47:45 +00:00
Chen Zhang
43b665ba48
add getAverageOrientation() to Orientation class as class method.
2015-04-02 19:15:09 +00:00
Martin Diehl
32f9e7f9d8
now giving just a 'Remark' when h5py is not found
2015-04-01 14:43:34 +00:00
Tias Maiti
f5801601d8
fixed UnboundLocalError (calling variable before assignment) in “inversePole” function
2015-03-29 19:16:45 +00:00
Tias Maiti
0e7325b27d
added function — “inversePole” axis rotated according to orientation (using crystal symmetry to ensure location falls into SST)
2015-03-28 07:43:49 +00:00
Martin Diehl
151d4ff75b
fixed bug (crash) in case (meaningless) strings found after part or section key.
...
DAMASK itself is fine with it, and it can be used for commenting.
thanks to B. Bode for figuring out
2015-03-27 16:23:21 +00:00
Martin Diehl
8a30021202
cleaned up core modul
2015-03-27 14:10:18 +00:00
Martin Diehl
dd5055dc19
improved warning in case the core module is not found, corrected '/echo/' handling (had problems with key 'c/a'
2015-03-15 15:24:45 +00:00
Martin Diehl
89fa31b070
avoid troubles with /echo/ tag by considering it as a comment
2015-03-13 14:46:11 +00:00
Philip Eisenlohr
4c1e9c559b
removed debug printing.
2015-03-06 15:13:18 +00:00
Philip Eisenlohr
3d86c9b363
corrected conversion of quaternion to AxisAngle and Euler angles.
2015-03-06 13:54:30 +00:00
Haiming Zhang
7818a8f467
Add codes about enforcing the boundary constraints for the fitting parameters, especially for the exponent term of non-quadratic yield functions.
2015-02-05 21:25:00 +00:00
Martin Diehl
84df61d4a0
made license check tolerate non-existing licenses
2014-10-21 05:40:26 +00:00
Martin Diehl
b7f078971b
added background threading (might be used in more than one script)
2014-10-15 08:32:53 +00:00
Martin Diehl
8985a2d7e6
fixed wrong position when comparing tables
2014-10-09 15:37:35 +00:00
Martin Diehl
033a275d82
a bunch of small changes. deleted compiled FFTW libraries
2014-10-02 21:27:03 +00:00
Philip Eisenlohr
28a7c4c727
corrected (probable) bug in disorientation calculation.
2014-08-22 15:45:03 +00:00
Philip Eisenlohr
d5e2e42f21
file handle closing can now be done from within class.
...
methods:
.input_close()
.output_close()
2014-08-22 15:37:46 +00:00
Martin Diehl
a8ced53b59
fix for the fix. now both, single column and single line files are working
2014-08-07 08:51:25 +00:00
Martin Diehl
1402527f48
fixed nasty bug cause strange behavior for voronoi tessellation
2014-08-06 19:32:26 +00:00
Martin Diehl
c8cd775747
added spectral solver grid location and index function to util library
2014-07-21 17:49:45 +00:00
Martin Diehl
28f3ba6841
fixed abaqus job submission
2014-06-25 08:32:33 +00:00
Martin Diehl
930cd0f3ac
improved abaqus test structure
2014-06-24 15:32:42 +00:00
Martin Diehl
1333921ed5
improved logging
2014-06-18 09:03:48 +00:00
Martin Diehl
7d8934c9f6
made some more functions case insensitive
2014-06-17 08:53:37 +00:00
Martin Diehl
eac0217b78
check for valid marc version
2014-06-17 07:29:05 +00:00
Martin Diehl
51b92f3ef9
simplified option parsing (so far, only for addCalculation and addMises)
2014-06-17 07:10:10 +00:00
Martin Diehl
488927a231
worked on phenopowerlaw test, made material.config writer case insensitive, polished lattice, removed deprecated part of documentation
2014-06-16 13:11:26 +00:00
Martin Diehl
25459823ee
improved on test scripts to support individual parser options
2014-06-11 17:46:26 +00:00
Martin Diehl
07765da01a
fixed typo
2014-06-07 08:36:43 +00:00
Martin Diehl
f928d9406d
replaced print output by logging class for better control over output (level, screen/file)
2014-06-04 15:34:35 +00:00
Martin Diehl
27ffa658b6
corrected use of variants
2014-06-03 17:19:56 +00:00
Martin Diehl
41b097bbc1
simplified updating
2014-06-03 13:09:52 +00:00
Martin Diehl
5321019457
updated some test related files as a preparation for a more intuitive automator
2014-06-03 10:30:51 +00:00
Martin Diehl
8493d6b414
now correctly detecting symbolic links for different marc versions
2014-05-16 06:21:50 +00:00
Martin Diehl
3d4ef650f3
simplified test scripts using msc.marc.
...
changed tolerance for hex test. was successfull for rev 3058, but now needs less strict tolerance, which seems to be related to the marc run script or the library, because with rev 3058 and current marc it has a slightly higher error
2014-05-09 11:29:35 +00:00
Martin Diehl
02edadfdeb
fixed typo in marc class
2014-05-08 11:02:26 +00:00
Martin Diehl
6df66c6349
updated Marc run_damask scripts, linking against BLAS is done by Marc anyway, removed. renamed extension of original files from org to more explicit original
2014-05-07 14:29:53 +00:00
Martin Diehl
86cec35799
new test for Marc 2013.1 + small changes on marc solver class to run with intermediate release (20xx.1)
2014-04-14 16:18:08 +00:00
Martin Diehl
342ca0be47
tested new scripts to update shebang, all files got same shebang (and for python files encoding)
2014-04-01 18:41:14 +00:00
Martin Diehl
188002f16e
more LF, Id, and executable status changes
2014-04-01 16:58:54 +00:00
Christoph Kords
3b20f1154e
added macro releases 2013 and 2013.1
2014-03-07 09:22:04 +00:00
Philip Eisenlohr
6fd8407d6e
moved "predefined" to colormap init
...
cleaned interpolate to not change color model
fixed color range cropping issue
2014-02-28 16:09:01 +00:00
Martin Diehl
3abe4699b7
fixed typo in output
2014-02-28 12:23:46 +00:00
Martin Diehl
3dee38433d
fixed formatting
2014-02-27 18:08:37 +00:00
Philip Eisenlohr
4e5803fc36
forgot to clear readBuffer upon data_rewinding...
2014-02-06 16:37:45 +00:00
Philip Eisenlohr
ccb950f3d8
checked Unix command piping conformity -- seems to now work:
...
seeds_fromRandom |
geom_fromVoronoiTessellation |
geom_grainGrowth |
geom_unpack |
geom_pack
However, grainGrowth functionality seems broken...
2014-02-03 23:44:29 +00:00
Martin Diehl
83e4bc3247
updated test for restart, now also checking if number of increments is the same
...
fixed output of test class
fixed small bug? in asciitable.py, @philip: please check
2014-02-03 19:30:28 +00:00
Tias Maiti
521a9d2d81
changed STDOUT to STDERR for complaining about missing h5py. Please report any warnings or errors to STDERR since otherwise command piping breaks...
2014-01-29 20:16:31 +00:00
Christoph Kords
de01c50d79
corrected format string in order to get meaningful error message
2014-01-29 12:54:18 +00:00
Martin Diehl
a6dac1eceb
fixed lib to use new config file
2014-01-24 13:15:01 +00:00
Martin Diehl
d66b41c686
fixed installation, will test now
2014-01-24 12:30:27 +00:00
Philip Eisenlohr
033b979471
corrected __slots__ class variable
2014-01-17 01:37:01 +00:00
Philip Eisenlohr
4d1d4fcf4a
forgot to change obsolete property "pathInfo" to new name "options"...
2014-01-16 21:40:54 +00:00
Philip Eisenlohr
c402d848f7
adopted "MSC_ROOT" instead of "msc" for pathinfo
2014-01-16 21:35:51 +00:00
Philip Eisenlohr
50b682db4c
syntax polishing
2014-01-16 21:29:39 +00:00
Martin Diehl
278f854e41
introduced functionality to get output results by point from the HDF5 file
2014-01-15 22:17:32 +00:00
Martin Diehl
01c8c434f7
finished work on the new installation scheme (if no bugs are found ;))
2014-01-14 19:03:41 +00:00
Martin Diehl
80da1c529e
some more work on the consistent installation scheme, fixed bug in Makefile
2014-01-11 19:13:02 +00:00
Martin Diehl
22aa934a7d
restructured results class, starting to write the unified damask result class
2014-01-09 21:35:21 +00:00
Martin Diehl
2f1db8f69a
introduced delimiter option (default = tab) for ascii table output, use space for geometry files
2013-12-17 08:16:29 +00:00
Philip Eisenlohr
e20ffb379d
changed numpy.readtxt logic from "data_asArray" returning a copy to inplace "data_readArray" now directly storing into self.data
2013-12-14 03:51:22 +00:00
Philip Eisenlohr
0e84db8f19
improved stability of xxx_append commands when dealing with iterable content
2013-12-12 02:36:05 +00:00
Philip Eisenlohr
9c7335f799
bug fix: wrong variable name "label" --> "labels"
2013-12-11 14:38:09 +00:00
Philip Eisenlohr
0e8fdaf59e
changed exponent in IPF color mapping from 1/3 to 1/2 to get closer to TSL-OIM reference.
2013-12-09 18:57:38 +00:00
Philip Eisenlohr
24a4ca8ca8
"quack-like-a-duck" check for object properties.
...
sum equiv Quats don't need inverse option anymore.
fixed (severe) bug in IPFcolor determination.
2013-12-09 15:49:57 +00:00
Philip Eisenlohr
c1b5b802ec
fixed problem of adding strings in "data_append" resulting in infinite recursion.
...
more gracefully check for problems.
numpy.loadtxt now correctly transposes single column of data.
2013-12-09 15:45:18 +00:00
Philip Eisenlohr
d17d6636df
substantial rewrite of former package. now includes dedicated orientation and (associated) symmetry class. should be easier to handle...
...
new or improved methods:
- disorientation (between two orientations)
- IPFcolor: TSL color of inverse pole figure for given axis
2013-11-25 19:04:39 +00:00
Philip Eisenlohr
05fa8bf580
make data_append() coping with any iterable data type (not just list)
2013-11-25 18:58:27 +00:00
Martin Diehl
9ac8846e41
compiling with hdf5 is now working for DAMASK (if HDF5=ON) and for playground example in private
2013-11-07 12:52:36 +00:00
Philip Eisenlohr
c496288144
make "orientation" module part of damask python interface
2013-10-08 13:56:28 +00:00
Philip Eisenlohr
ec6440f1f4
when adding labels now making sure that they get processed during output writing
2013-10-08 13:54:13 +00:00
Martin Diehl
9f39405adf
fixed material.config of elastic tests to run with new error, currently to strict, needs fix
...
removed long spectral example test from list of daily tests
2013-09-20 16:23:52 +00:00
Martin Diehl
a0f304021f
fixed restarting for Polarisation and AL, updated corresponding test and polished output in python (some statements are screwed up when making them Python3 compatible)
2013-09-20 14:22:37 +00:00
Martin Diehl
415892b8e7
did some conversion needed for use with python 3
2013-09-18 19:31:27 +00:00
Martin Diehl
3eb8aa1362
checked for python3 compatibility:
...
use "print('foo')" instead of "print 'foo'"
and "except(error) as e" instead of "except error,e"
2013-09-14 10:52:02 +00:00
Martin Diehl
3bb5a5e7b5
line too long in DAMASK_spectral_solverPolarisation.f90, reordered curl calculation for clearer look, fixed test for Marc 2013
2013-08-08 18:10:58 +00:00
Martin Diehl
4cb6c0a706
added support for MSC.Marc>2013 to tools (execution with option for optimization (h/l/-) and OpenMP (True/False)
...
added test for MSC.Marc2013
removed automated test run for MSC.Marc 2010, hast to run on a different machine and is deprecated anyway
2013-08-08 09:12:44 +00:00
Martin Diehl
cc6c524740
updated test for spectral solver example and example files. changed marc job submission such that the marc version number is no longer expected at the end of the subroutine file
2013-08-06 09:48:57 +00:00
Philip Eisenlohr
9abc9a99fc
added possibility to
...
* read ASCIItable not having labels
* write numpy array as data
2013-06-30 00:21:51 +00:00
Christoph Kords
fab0ea8e4e
interpolation method is now an attribute of the Colormap class; added classic "rainbow" colorscheme to predefined ones
2013-05-28 20:15:13 +00:00
Christoph Kords
65c5090378
added option to linearly interpolate colors to Colormap class
2013-05-28 17:33:51 +00:00
Christoph Kords
2784a96a51
do not print colormap name for format=raw
2013-05-28 14:45:53 +00:00
Christoph Kords
7c42facfe0
predefined colormaps now as class attribute of "Colormap"
2013-05-28 14:04:25 +00:00
Christoph Kords
ee2595c008
added method to use predefined colormaps
2013-05-28 13:50:36 +00:00
Christoph Kords
4fda285e08
added method to invert colormap
2013-05-28 12:18:25 +00:00
Christoph Kords
d01a8bdf8c
renamed methods "to" and "asModel" to more (?) meaningfull "convertTo" and "expressAs"
2013-05-28 11:47:15 +00:00
Christoph Kords
8421587724
added some space here and there for more readability
2013-05-28 11:39:26 +00:00
Martin Diehl
3f9d642d87
corrected error message when complaining about uncompiled core module
2013-04-29 16:30:08 +00:00
Martin Diehl
aee8196b32
example test for Abaqus now takes files from examples folder, both Abaqus test take now *.env from installation/mods_abaqus
2013-03-26 12:06:19 +00:00
Mahesh Balasubramaniam
7fd1dca4f5
corrected a little mistake on line 145 that sets the maximum value of XYZ values to be 1.0
2013-03-25 20:18:30 +00:00
Martin Diehl
cb8a7e7d25
new function to compare tables both located in current directory
2013-03-19 15:46:07 +00:00
Martin Diehl
43ec1d2051
added output of perceptual unfiform colormaps to GOM (DIC Aramis) format, deleted some old files in the documentation folder
2013-03-19 15:19:46 +00:00
Martin Diehl
3660b2a245
added functionality to check for available licenses to damask/environment.py, now using this functionality + a check for the correct version before starting Abaqus6.12.2_compileIfort/run_test.py and Abaqus6.12.2_example/run_test.py
2013-03-04 19:39:13 +00:00
Martin Diehl
b94caae041
added missing import of os
2013-02-19 15:57:51 +00:00
Philip Eisenlohr
d8da2f60d8
added core module function math_periodicNearestNeighborDistances
2013-02-19 14:56:26 +00:00
Philip Eisenlohr
fc9ecc7ed5
fixed bugs in HSL2RGB and the two CIE conversions.
...
streamlined interpolation.
2013-02-02 20:17:02 +00:00
Philip Eisenlohr
95c74961dd
polished syntax here and there.
2013-02-02 15:11:55 +00:00
Philip Eisenlohr
0dabe29657
ignore problems when importing (outdated) core module during its rebuilding.
2013-02-01 11:45:20 +00:00
Philip Eisenlohr
20060b4275
added pathInfo parsing of $shellVariables. These are now interpreted as absolute path (used to be wrongly considered relative...)
2013-02-01 11:30:57 +00:00
Martin Diehl
e74b5da19a
changed all remaining routines to fortran-fast arrays (geometry reconstruction etc.)
...
changed all remaining routines in f2py to more clever determination of array size (requires f2py >= 2.0)
enabled 3D visualize to work with odd resolution by switching to linear reconstruction
PLEASE NOTE: Redefinition of routines for f2py might cause trouble -> DELETE DAMASK_ROOT/lib/damask/core.so in this case
further changes: added pure statement where possible, polished, unified use of "Q" for "Quaternion" and reordered math to have similar routines together
2013-01-31 16:28:08 +00:00
Martin Diehl
96577b18fb
introduced error code for run_test.py
2013-01-23 18:33:46 +00:00
Mahesh Balasubramaniam
a1f0ed483c
export method with format and revised crop options added to the Colormap class.
2013-01-18 17:17:50 +00:00
Martin Diehl
b018934b45
simplified code, added functionality to export raw list
2013-01-16 18:45:10 +00:00
Mahesh Balasubramaniam
7ac7d1a657
new tool for creation of colormaps, now using proper classes
2013-01-15 18:24:10 +00:00
Martin Diehl
0d4db957f8
started to rearrange testing folder
2013-01-14 15:20:17 +00:00
Martin Diehl
fd0e096256
rewrote colormaps to use classes
2013-01-08 18:47:44 +00:00
Mahesh Balasubramaniam
820b8eb2c1
put colormap related functions into library, renamed and added scripts for creation of colormaps
2013-01-04 13:57:36 +00:00
Martin Diehl
e3970ce152
added detection of Marc 2012 in postResults (lib/damask/solver/marc.py)
...
added test for Marc 2012 and updated old tests from 2010 to 2012
2012-12-13 17:50:00 +00:00
Martin Diehl
7848e933bb
wrong file was selected during last commit
2012-12-12 17:10:04 +00:00
Philip Eisenlohr
dc746119e3
introduced two more helper functions:
...
- labels_index
- data_asArray
2012-12-06 21:46:19 +00:00
Martin Diehl
549ea3c1e6
updated restart test to use the new table comparison facilities and check the new basic solver (part 1, there is some problem with renaming)
2012-11-23 17:21:18 +00:00
Martin Diehl
11ed7fab86
corrected bug in curl calculation causing the output of transposed tensor (according to information stored in testing/9102/proof/Curl of Tensor - Physics Forums.pdf)
...
addCurl test is now done against analytical solution and working, added it to list of automated tests.
small improvements on test.py
2012-11-23 15:16:51 +00:00
Martin Diehl
565713fecb
improve functionality to compare ASCII tables
2012-11-22 18:01:51 +00:00
Martin Diehl
a40b73dc72
for array comparison, only values are taken into consideration that are non zero in array 1 AND array 2
2012-11-21 15:37:59 +00:00
Martin Diehl
78aa010565
now just comparing substring to figure out if setup_processing was importing the core module
2012-10-25 12:40:06 +00:00
Martin Diehl
868984cb89
import of damask.core will not complain any more if done in setup_processing.py, however setup_processing.py will check if core.so exist after compilation and delete it before compilation
2012-10-25 07:55:27 +00:00
Martin Diehl
398643a3b1
made exception in case of non-working f2py code (core.so) again verbose
2012-10-10 16:38:02 +00:00
Martin Diehl
7ad3ce62e7
added hint if test don't support update
2012-10-09 07:37:48 +00:00
Claudio Zambaldi
1585fbe927
improved material.config writer class
...
includes example of usage
should replace material.py, after the tests
have been confirmed to work with it
mat=damask.Material()
m=mat.example_1()
m.write(file='material.config_<descriptive-label>')
2012-09-07 18:25:25 +00:00
Martin Diehl
96ba5ecae4
moved some more 'mesh related' functions for post processing from math.f90 to mesh.f90
...
f2py functions remaining in math.f90 now uses assumed size arrays in order to have simpler interfaces. This is only working with python 2.7!
changed python pre- and postprocessing scripts.
If you encounter any problems whith core modules, try to remove the old core.so in the lib/damask
2012-08-27 08:04:47 +00:00
Mahesh Balasubramaniam
87bec7eafa
added test to check if lab-to-load rotation is done properly, small improvement on test.py
2012-08-14 13:23:50 +00:00
Martin Diehl
ee1bde0cd7
enabling regridding more than once by introducing deallocation of arrays
...
added J2 test (stub from Taymour)
2012-07-31 15:37:49 +00:00
Martin Diehl
8a64be7d1b
added restart-test to list of automated tests, improved reporting of tests
2012-07-26 07:47:31 +00:00
Claudio Zambaldi
9078d70af0
polishing, and using numpy's deg2rad/rad2deg
2012-07-19 16:05:05 +00:00
Claudio Zambaldi
b2a7f85101
__init__ of damask package not crashing in python 2.5 if core module not available
...
added some Matlab-like utility functions (damask.sind, cosd, tand, acosd, ...) that take and return degree instead of radians
2012-07-18 13:46:33 +00:00