Martin Diehl
af493cf9fd
using class
...
needs more memory, but should be faster and is better readable
2019-05-26 21:32:08 +02:00
Martin Diehl
339b86f784
bugfix + more verbose reporting
2019-05-16 11:44:03 +02:00
Martin Diehl
9f7fa5393a
fix for scalar datasets
2019-05-16 09:31:13 +02:00
Martin Diehl
4599d1c34e
does not match
...
node does not make sense, is weirdly numbered
2019-05-16 00:42:22 +02:00
Martin Diehl
3c0c0a2cd1
more flexible in selecting data
2019-05-16 00:27:06 +02:00
Franz Roters
998789528c
Merge branch 'HDF5-out-homog-2' into 'development'
...
Hdf5 out homog 2
See merge request damask/DAMASK!78
2019-05-13 17:34:59 +02:00
Vitesh Shah
feb1465803
Better to have actual increment num in output file
2019-05-08 17:31:18 +02:00
Martin Diehl
0cc2b1214d
store requested data in ASCII file
2019-05-07 15:18:12 +02:00
Martin Diehl
1eaf67ad82
store results in subdirectory
...
defaults to postProc
2019-05-07 13:30:05 +02:00
Martin Diehl
f65423fe9f
rudimentary postResults for HDF5 output
...
only meant for compatibility during transition
2019-05-05 10:09:23 +02:00
Martin Diehl
8a9baf6d78
preparing output of mech_homog to HDF5
2019-04-30 18:45:38 +02:00
Philip Eisenlohr
d74599d39a
Merge branch 'HDF5-postprocessing' into 'development'
...
Hdf5 postprocessing
See merge request damask/DAMASK!72
2019-04-29 23:24:42 +02:00
Martin Diehl
6b7fd6b7ea
visualizing data from DADF5: first prototype
2019-04-18 11:58:17 +02:00
Martin Diehl
7177813710
adding data to geometry
2019-04-17 19:57:16 +02:00
Martin Diehl
8eb1a35dfb
first version of a library to parse HDF5
...
- preliminarly called DADF5 (DAMASK HDF5)
- script to write (empty undeformed) geometries is also added
2019-04-13 11:25:53 +02:00
Martin Diehl
0c6fde97f9
wrong positions for point visualization
...
- now the cell centers are at the centers of the cells for cell
visualization
2019-04-13 00:42:05 +02:00
Martin Diehl
433281f71d
following Rowenhorst convention
2019-03-09 19:58:17 +01:00
Martin Diehl
0d08659b2a
general cleaning
2019-03-09 11:11:40 +01:00
Martin Diehl
60feb96afd
let vtk decide on the file extension
2019-03-09 11:11:40 +01:00
Martin Diehl
5ab8e50d09
consistent with reference paper
2019-03-08 19:07:19 +01:00
Philip Eisenlohr
c706ca5ba3
no progress bars in quite mode
2019-02-26 21:22:49 -05:00
Eureka Pai
f3d2803443
addMises failed for single run of either --stress or --strain
2019-02-25 19:29:12 -05:00
Eureka Pai
2089726800
corrected output extension of vtk files to reflect binary format
2019-02-25 18:48:40 -05:00
Martin Diehl
d3ac3cc0f5
using new Orientation class
2019-02-24 08:34:20 +01:00
Martin Diehl
9fa2553af4
task for DREAM.3D if needed
...
pointwise takeover should not be a problem anymore as reading in takes
no time (at least in comparison to addGrainID)
2019-02-23 22:14:55 +01:00
Martin Diehl
b3455c825e
transition to new orientation class
...
forward-backward conversion quite stable
2019-02-23 21:49:05 +01:00
Martin Diehl
93ae5cbd07
Merge remote-tracking branch 'origin/development' into 10-consistent-orientation-conversions-3
2019-02-22 23:05:36 +01:00
Martin Diehl
43a451b2e1
inplace not useful
...
use shell script if you want to keep an backup of your old data
2019-02-18 14:36:04 +01:00
Martin Diehl
27ebe1f665
improved documentation
2019-02-17 08:17:40 +01:00
Martin Diehl
5c20609e81
more verbose help, drop support for really old vtk
2019-02-16 22:20:44 +01:00
Martin Diehl
802ef6fe5c
more precise help
2019-02-16 18:25:41 +01:00
Martin Diehl
c6781e415a
using default notation for vector access
2019-02-16 18:23:00 +01:00
Martin Diehl
0b1bfdfd4e
was only working with python2
2019-02-16 18:17:05 +01:00
Martin Diehl
29fc53fdcb
more specific about invocation
2019-02-16 17:41:56 +01:00
Martin Diehl
fa003e8077
small adjustments for autodoc
2019-02-16 15:26:21 +01:00
Martin Diehl
4ce151c967
camel casing (easer for foswiki)
2019-02-15 23:22:51 +01:00
Martin Diehl
0cc4e582e4
Merge branch 'development' into 26_autodoc-2
2019-02-15 20:47:14 +01:00
Martin Diehl
566099ad81
automatic documentation for some post processing scripts
2019-02-15 18:52:47 +01:00
Philip Eisenlohr
d58c3008ae
fixed too long line in addLinked
2019-02-14 18:31:22 -05:00
Philip Eisenlohr
742d58cfce
added ASCIItable tests to CI pipelining
2019-02-14 18:24:09 -05:00
Martin Diehl
c4cb35891c
all fine with python3
2019-02-14 22:56:39 +01:00
Martin Diehl
889cfc8ba0
vtk script only work with python3 on new testing
2019-02-14 01:39:54 +01:00
Martin Diehl
217024667b
forgotten comma
2019-02-12 11:30:43 +01:00
Martin Diehl
608852df83
rotation paper has angle as last component
2019-02-12 10:58:38 +01:00
Martin Diehl
7da8980cc0
bugfixes: wrong shape, wrong conversion
2019-02-12 09:04:35 +01:00
Martin Diehl
336a80091f
rodrigues is 4-vector with rotation being the last component
...
established a single source of truth for length
2019-02-12 08:59:26 +01:00
Martin Diehl
97ac437686
more user friendly constructors
2019-02-12 08:14:27 +01:00
Martin Diehl
ef3fc0b58a
bugfix: wrong array indexing
...
rotation of meshgrid tuple implemented
2019-02-12 07:42:46 +01:00
Martin Diehl
48b0307fab
using new rotation class
...
cannot rotate matrices (3,3) and (3,3,3,3) at the moment
2019-02-12 00:27:13 +01:00
Philip Eisenlohr
74956c0290
avoid error for empty "name"
2019-01-23 20:59:07 -05:00
Martin Diehl
1192f16582
Merge remote-tracking branch 'origin/development' into 56-parallel-hdf5
2019-01-06 20:56:36 +01:00
Martin Diehl
7768c5874b
simpler interface for progress bar
2019-01-05 10:41:49 +01:00
Martin Diehl
c00d00c219
Merge remote-tracking branch 'origin/development' into misc-improvements
2019-01-05 09:22:41 +01:00
Philip Eisenlohr
3c5df0a4a4
[skip ci] viewTable acknowledges requested output type(s)
2019-01-04 16:34:21 -05:00
Philip Eisenlohr
bcd4288f1e
[skip ci] groupTable according to unique values in more than one column
2019-01-03 18:25:28 -05:00
Philip Eisenlohr
b5d62c8e29
[skip ci] print estimated remaining processing time for postResults
2019-01-03 11:31:04 -05:00
Martin Diehl
835e3f95a5
[skip ci] was not used
2018-12-31 08:05:56 +01:00
Martin Diehl
6f40989465
order was randomized when creating dict
2018-12-31 07:18:45 +01:00
Martin Diehl
a992b8b1f5
random order caused test to fail
...
rather a workaround, but since HDF5 is coming...
2018-12-30 11:41:22 +01:00
Philip Eisenlohr
25a80723c0
numpy interface changed to be strict about 2D array shape in histogram
2018-12-20 17:14:55 -05:00
Martin Diehl
1ef82e351b
Merge branch 'orientationClass_with_negative_P' into development
2018-12-20 20:43:00 +01:00
Philip Eisenlohr
7df6dfbf3f
renamed "showTable" to "viewTable" to avoid clashing with astropy.table module
2018-12-18 15:10:26 -05:00
Martin Diehl
3bab08fdeb
Merge branch 'development' into 56-parallel-hdf5
2018-12-12 07:46:02 +01:00
Martin Diehl
1f2fbbee21
consistent name
2018-12-10 09:38:57 +01:00
Martin Diehl
767650e002
more general option + improved descriptions
...
hopefully more user friendly
2018-12-10 09:27:39 +01:00
Martin Diehl
d219842ad8
[skip ci] consistent tolerances
2018-12-09 20:19:33 +01:00
Martin Diehl
60686fb72c
[skip ci] improved reporting
2018-12-09 18:05:37 +01:00
Martin Diehl
bc04b83d8a
no reason for using python2.7
2018-12-09 14:09:26 +01:00
Martin Diehl
08ac49fac0
line too long
2018-12-09 13:21:56 +01:00
Martin Diehl
130fac21c6
cleaning
2018-12-09 13:15:59 +01:00
Martin Diehl
d43dfa569b
lines too long
2018-12-09 12:37:27 +01:00
Martin Diehl
65165ffc5e
assumed wrong type
...
quaternion should have lenght one
2018-12-09 12:35:32 +01:00
Martin Diehl
697d97cd38
cleaned
...
legacy format was for pre-MPI output where the extra bytes at start and
end of a chunk (Fortran out) had to be handled manually
2018-12-09 12:30:07 +01:00
Martin Diehl
5054291557
python3 compatible status message
2018-12-09 12:25:31 +01:00
Martin Diehl
741032339e
time/math/datatype are not used/defined any more
2018-12-09 11:05:35 +01:00
Martin Diehl
aefa006d09
simplified
...
assume quaternions as input
2018-12-09 10:53:53 +01:00
Martin Diehl
213e31ff87
string was split into letters
2018-12-09 10:53:25 +01:00
Martin Diehl
d9b47f09bc
modernized
...
split arguments logically, assume 3-vector for coordinates
2018-12-09 10:52:37 +01:00
Martin Diehl
7eaea64d09
python3 compatible
...
hope that the new bar causes less trouble than the background message
2018-12-09 09:08:33 +01:00
Martin Diehl
6b73840853
works with python3
2018-12-09 08:07:40 +01:00
Martin Diehl
83a3628765
bug fixes
2018-12-09 07:58:42 +01:00
Martin Diehl
d145b257aa
new version of numpy complain about overlong range argument
2018-12-09 07:57:05 +01:00
Martin Diehl
4130cbcffa
simplified
...
- always use quaternion as input for orientation
- addAPS34IDEstrainCoords uses table functionality
- rotateData can figure out whether input is vector or tensor
2018-12-09 07:10:31 +01:00
Philip Eisenlohr
3f8726464d
addOrientations now checks its input for convention conformity
2018-12-08 13:22:22 -05:00
Philip Eisenlohr
ac45a9e2d3
more output options, frame input changed to "lab expressed in crystal"
2018-12-07 22:03:14 -05:00
Philip Eisenlohr
c0f7ae2798
updated scripts that still used formerly valid object properties of quaternions
2018-12-05 09:07:29 -05:00
Martin Diehl
8f26fc9358
Merge remote-tracking branch 'origin/development' into 56-parallel-hdf5
2018-12-04 22:34:29 +01:00
Martin Diehl
c0ad496764
eigenvalue solver seems to depent on python version
2018-11-22 23:13:49 +01:00
Martin Diehl
76accdeaf2
all orientations are passive now
...
.conjugated() not needed anymore.
Rest is polishing
2018-11-22 18:45:01 +01:00
Philip Eisenlohr
9b82b7fadd
removed obsolete keyword "Bunge" from asEulers() method
2018-11-22 11:51:53 -05:00
Martin Diehl
ba5b623f14
Merge branch 'development' into improved-HDF5
2018-11-18 19:44:36 +01:00
Martin Diehl
fcb14f6099
was never used
2018-11-18 12:04:08 +01:00
Martin Diehl
8ee2de61ea
map returns no list any more
2018-11-17 12:12:20 +01:00
Martin Diehl
257d9d5350
needs to be list
2018-11-17 12:12:20 +01:00
Martin Diehl
44bd85a041
not working for python3, trying
2018-11-17 12:12:20 +01:00
Martin Diehl
e1a730e96b
python3 compatible integer division and argument sequence in agreement with documentation
2018-11-17 09:58:54 +01:00
Martin Diehl
558745b548
explicitly require python3
...
on older systems, python3 tpyically exists but python2 is the defaul
2018-11-17 08:12:12 +01:00
Martin Diehl
4ffb4a4321
fixed several typos
2018-11-16 19:28:24 +01:00
Martin Diehl
26811b74d6
known to work with python3
2018-11-16 09:18:29 +01:00
Martin Diehl
a3647cc587
more files with confirmed python3 compatibility
2018-11-16 09:03:12 +01:00
Martin Diehl
f47891e292
booleans not allowed as indeces any more
2018-11-16 09:03:12 +01:00
Martin Diehl
fe2c7efa27
seem to work
2018-11-15 13:56:48 +01:00
Martin Diehl
8f80152a03
use floor division of integers
...
1/2 = 0.5 in python3 (would be 0 in python2)
2018-11-15 12:28:36 +01:00
Martin Diehl
efd29e62f7
verbose should be optional
...
- causes problems on many systems (screwed up output)
- does not work with python 3 since threading class has changed
2018-11-15 12:16:55 +01:00
Philip Eisenlohr
0cbcb028aa
fixed problem with "ValueError: Mixing iteration and read methods would lose data" for string-containing tables
2018-10-21 15:39:30 -04:00
Martin Diehl
7480d1a842
fixes for Python3
2018-10-19 07:35:59 +02:00
Martin Diehl
2632be2a76
polishing
2018-07-20 03:09:53 +02:00
Martin Diehl
1f637a0c49
python3 compatible map requires conversion to list
2018-07-19 18:01:38 +02:00
Martin Diehl
0438b7113a
using util function where possible, ensuring python3 compatibility
2018-07-19 16:38:25 +02:00
Martin Diehl
f928bd5e5b
more python 3 compatibility
2018-07-19 16:26:30 +02:00
Martin Diehl
35e470ff4d
needed for python3
2018-07-19 16:19:05 +02:00
Martin Diehl
9821654aae
iteritems does not exist in python3 anymore
...
items also works for python2 (might be slower though)
2018-07-19 16:16:10 +02:00
Martin Diehl
d138993c1d
using util functionality to be compatible with python3
2018-07-19 16:12:36 +02:00
Martin Diehl
aadcd61824
polishing
2018-06-18 00:05:55 +02:00
Martin Diehl
1bbaa7cefe
reverted last commit, scipy.linalg is different from numpy.linalg
2018-02-26 23:50:44 +01:00
Martin Diehl
6046a7ae3d
there is no scipy.linalg (at least on my system)
...
numpy.linalg is automatically imported together with numpy
2018-02-26 20:22:57 +01:00
Philip Eisenlohr
b078234644
added scipy and scipy.linalg as known modules for calculations
2018-02-25 14:19:22 -05:00
Philip Eisenlohr
e304ce35da
forgot to rename function call to read "coordGridAndSize"
2018-01-30 12:58:43 -05:00
Philip Eisenlohr
355d576b4d
shortened code with utility function coordGridAndSize
2018-01-30 09:20:47 -05:00
Philip Eisenlohr
710970d728
updated option --label for addCurl/Div/Grad
2018-01-29 21:27:05 -05:00
Philip Eisenlohr
1d71a52133
further simplifcation of scripts
2018-01-29 15:10:41 -05:00
Philip Eisenlohr
b45b43c5ac
bug fix in addCurl, simplified scripts
2018-01-29 14:12:19 -05:00
Philip Eisenlohr
622d038932
einsum now compatible with numpy 1.14
2018-01-29 09:18:05 -05:00
Philip Eisenlohr
30272fc355
generalized addCurl with --data instead of --tensor and --vector
2018-01-28 18:25:50 -05:00
Philip Eisenlohr
8fb127f31c
better description of activity
2018-01-28 18:08:02 -05:00
Philip Eisenlohr
761670f218
generalized addGradient with --data instead of --scalar and --vector
2018-01-28 18:02:35 -05:00
Philip Eisenlohr
532d669d33
switched to more robust line based output
2018-01-27 17:45:53 -05:00
Brendan Vande Kieft
ceb0ff09e6
Subdivide vertex data with geometry when converting Marc input to VTK
2018-01-15 17:20:24 -05:00
brendanvk
a03bb1ec3e
Add MSC.Marc to VTK conversion support
...
marc_to_vtk.py takes Marc input file, subdivides it and creates a
vtkUnstructuredGrid .vtu file with the resulting geometry. Currently
supports hexahedron elements.
vtk_addGridData.py adds nodal/cell data to some VTK grid. It is
essentially vtk_addRectilinearGridData with support for unstructured
grid (.vtu) format, which is marc_to_vtk.py's output.
2017-12-11 12:32:38 -05:00
Philip Eisenlohr
c33655b479
fixed pyflakes issues
2017-11-28 11:14:22 -05:00
Philip Eisenlohr
0c8c4b54aa
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development
2017-11-28 11:12:05 -05:00
Philip Eisenlohr
3b96fac8bd
added script to calculate numerical derivative of ASCIItable data
2017-11-28 10:59:53 -05:00
Martin Diehl
4dfb52c792
unfinished HDF5 should not be part of the next release
2017-11-21 10:23:50 +01:00
Martin Diehl
eda8c24b7d
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development
2017-10-07 17:24:59 +02:00
Philip Eisenlohr
14c1291046
added "--quiet" option to suppress online messaging
2017-10-03 14:03:50 -04:00
Tias Maiti
f46d721750
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development
2017-09-03 17:42:02 -07:00
Philip Eisenlohr
64259d9239
bug fixed in whitelist sorting, more robust against numpy parsing errors
2017-08-28 19:38:14 -04:00
Philip Eisenlohr
5b8bc65d37
exchanged string 'n/a' for 'nan' to allow smooth parsing as float value
2017-08-28 19:32:59 -04:00
Philip Eisenlohr
9e5896a6c5
large speedup (10x) for unconditional filtering by using read/writeArray
2017-08-23 20:54:02 -04:00
Philip Eisenlohr
fc4fb43d48
aborting when NO data columns found
2017-08-23 17:53:30 -04:00
Philip Eisenlohr
e82df723d1
added Rodrigues vector as possible input format
2017-08-23 14:10:56 -04:00
Philip Eisenlohr
b3ac200c17
report linking column in screen output
2017-08-23 14:10:22 -04:00
Philip Eisenlohr
255a465e8b
sharpened error detection and reporting
2017-08-16 15:18:29 -04:00
Philip Eisenlohr
e18c2fd74c
slight layout tweak
2017-08-16 12:52:46 -04:00
Philip Eisenlohr
91c70fc823
sharpened error detection and reporting
2017-08-16 12:51:32 -04:00
Philip Eisenlohr
a2947789b5
clarified help and reporting
2017-08-15 16:12:06 -04:00
Martin Diehl
95c0179945
labeling vectors and values independenty in addSpectralDecomposition
2017-08-13 02:14:34 +02:00
Philip Eisenlohr
e6cc948ddf
added vector-valued conditions and cleaned obsolete code
2017-08-11 15:19:47 -04:00
Zhuowen Zhao
b7d4b3d190
simplified internal handling of conditions and added vector capability to it
2017-08-11 11:56:27 -04:00
Tias Maiti
3860eecb7c
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development
2017-08-10 11:09:37 -04:00
Martin Diehl
cb62066667
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development
2017-07-31 23:00:24 +02:00
Philip Eisenlohr
68493a00f5
fixed PEP line continuation warning
2017-07-31 10:04:04 -04:00
Philip Eisenlohr
c8222d6f82
Merge remote-tracking branch 'origin/development' into development
2017-07-31 09:51:10 -04:00
Philip Eisenlohr
837b14592a
addLinked can now link between vector-valued columns
2017-07-31 09:34:30 -04:00
Unknown
269eacb11d
added flag for skipping right-handedness check of eigenvector basis
...
separate names for min,mid,max eigvals and vecs
2017-07-28 13:44:17 -04:00
Martin Diehl
6547ab8c69
not needed, ASCII table ensures shape (Npoints,Nvalues)
2017-07-05 04:43:20 +02:00
Martin Diehl
f085f61c4d
testing hook that checks for executable bit
2017-06-02 09:25:58 +02:00
Martin Diehl
6599f7299d
correct description
2017-06-01 10:00:29 +02:00
Martin Diehl
e5af0630fe
gaussian filter (wrapper no ndimage)
2017-05-29 10:33:05 +02:00
Philip Eisenlohr
66b4e24ab7
solver.Marc.version has no argument anymore
2017-03-20 15:13:54 -04:00
Philip Eisenlohr
746cb9c306
nicer code layout
2017-01-19 15:10:38 +01:00
Philip Eisenlohr
c80b02dd72
avoid reporting "none" as STDIN filename
2017-01-19 15:10:17 +01:00
Philip Eisenlohr
814b05e2f6
renamed to hopefully clearer express functionality
2016-11-29 16:30:24 -05:00
Philip Eisenlohr
0f04ddd88e
polishing of whitespace, usage help, etc.
2016-11-29 14:44:34 -05:00
Philip Eisenlohr
43c1880195
fixed periodic averaging to work with multi-dimensional data
...
option --periodic now takes list of labels that undergo periodoc domain averaging, i.e. incompatible to former API!
2016-11-29 14:44:06 -05:00
Philip Eisenlohr
231f05e142
corrected bug that added index column values as first output
2016-11-29 11:16:50 -05:00
Philip Eisenlohr
c9ec2e0f46
New table mapping based on shared column values
...
renamed old addMapped to addRowMapped to better reflect true functionality.
2016-11-29 09:33:35 -05:00
Martin Diehl
873c52cceb
using 3 way merge to have syntax as similar as possible
2016-11-07 19:51:12 +01:00
Chuanlai Liu
551b4369a1
improved readability
2016-11-07 09:06:35 +01:00
Chuanlai Liu
d35c9dd431
using Einstein sum to replace 'for loop'
2016-11-04 18:50:39 +01:00
Philip Eisenlohr
94fcc9ad24
fixed language and syntax
2016-10-31 10:40:58 -04:00
Martin Diehl
99dc75c2fd
proper capitalization
2016-10-25 21:53:32 +02:00
Martin Diehl
8a94f55a2e
python 3 compatibility
2016-10-25 06:44:12 +02:00
Martin Diehl
a84e7310f5
fixed prospector hints
2016-10-24 20:30:51 +02:00
chen
96349ebf53
add log to each dataset
2016-10-17 18:24:47 -04:00
chen
703ae3c6d6
add script for adding von Mises equivalent to HDF5 file
2016-10-17 17:29:44 -04:00
chen
4d849219f7
will come back for this later
2016-10-17 16:59:42 -04:00
chen
8e7f0c255b
fix some syntax error
2016-10-17 16:58:04 -04:00
chen
74b29881f3
strain tensor calculation script for HDF5
2016-10-17 16:24:11 -04:00
chen
1a2194f042
remove useless functions
2016-10-17 16:23:21 -04:00
chen
fb1e4f0c39
add IPF color tuple for HDF5 file
2016-10-17 12:24:29 -04:00
chen
b04c5801a5
syntax polish
2016-10-14 14:38:09 -04:00
chen
0a35761636
delete unused module
2016-10-14 14:33:22 -04:00
chen
dfb49c3138
as script for calc Cauchy stress in HDF5
...
no safe net in the script, following 'let-it-fail' design
2016-10-14 14:32:20 -04:00
chen
fd4b495de2
adding interface for addCalc with HDF5
2016-10-14 14:30:46 -04:00
chen
05a3b569fc
adding parallel version of addCalc for H5 table
2016-10-14 12:26:46 -04:00
chen
33de9cf2b9
script for adding data from HDF5 to vtk file
2016-10-14 12:06:59 -04:00
chen
1f01dce862
use 4 space indentation
2016-10-14 12:06:09 -04:00
chen
2f2490e784
remove unused import
2016-10-14 10:48:08 -04:00
chen
e5e2eef375
add script generate vtr file from HDF5
...
following "let-it-fail" design
2016-10-14 10:45:42 -04:00
chen
353b5b6994
avoid doctring as argument
2016-10-14 10:42:03 -04:00
chen
9ac3f564c8
syntax fix
2016-10-13 13:45:25 -04:00
chen
8cdc7c0b10
add xdmf wrapper generator for HDF5
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Not recommended for large dataset due to potential memory leak currently plaguing Xdmf ilbrary.
2016-10-13 13:41:04 -04:00
chen
ec59dfeec0
do not reshape data
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since xdmf is not stable right now, there is no need to reshape the data to tie it to the mesh. comment them out for future reference
2016-10-13 13:22:37 -04:00
chen
ace06fd0e1
skip dulplicated columns in ascii table
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also add a todo list at the top
2016-10-13 11:33:38 -04:00
chen
c311ac47ca
force using rectangular mesh
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Paraview cannot handle large number of polyvertices using xdmf, forcing a meshed structure to by pass the problem.
2016-10-12 20:20:15 -04:00
chen
ffcfe67c73
remove debug output, fix name handling error
2016-10-10 09:46:11 -04:00
chen
7278605004
fix naming error
2016-10-09 19:13:44 -04:00
chen
6450cb3003
fix syntax error
2016-10-09 19:12:45 -04:00
chen
6eb111dc7c
add script convert ASCII table to HDF5
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using H5Table
2016-10-09 19:01:38 -04:00
chen
4e8bd83d4b
syntax error fix
2016-10-07 15:32:10 -04:00
chen
f3308dbef6
replace scalar/vector option with data
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vtk does not care 1D data array length
2016-09-14 19:59:26 -04:00
chen
ae16ccae61
need to use deep copy when converting np array to vtk array
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for batch array conversion, it is necessary to use the deep copy to ensure numpy_support.numpy_to_vtk works as it should.
2016-09-14 15:06:00 -04:00
chen
53d2df6058
vector support 1D vector with arbitrary lenght
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simple hack to bypass the size check for vectors since vtk does not care the vector size.
2016-09-14 12:37:07 -04:00
Martin Diehl
77729f39e3
commenting last commit
2016-09-11 14:41:48 +02:00
tiasmaiti
06405bc251
fixed coordinate system convention to be right handed always instead of random left and right handed assignment
2016-09-10 16:39:25 -04:00
tiasmaiti
2daad7542e
added option for periodic averaging
2016-09-10 16:39:25 -04:00
chen
ee322be870
use np.histogram2d, fixed list.append bug when using weight column
2016-09-09 16:17:00 -04:00
Chen
8c4767d58c
syntax fix
2016-09-09 07:28:54 -04:00
Chen
017c08a7bb
syntax fix
2016-09-09 07:28:31 -04:00
chen
da538fbce9
speed up of VTK data transformation
2016-09-08 18:05:49 -04:00
Chen
a2f3839ca8
add missing numpy import
2016-09-02 14:37:15 -04:00
chen
d9077805e4
Forced symetric tensor when adding tensor to vtk
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VTK addTensor by default using the lower triangle to populate its tensor object. Enforcing the tensor to be symmetric to avoid necessary confusion when adding data (most stress/strain tensor should symmetric by default, so it should not affect the results)
2016-09-02 09:30:49 -04:00
Chen
20d1164e5d
add tensor support for vtk_addRectlinearGridData
2016-09-01 16:57:29 -04:00
Chen
6db0a42eae
addvtk data now support tensor type (9 components)
2016-09-01 12:47:26 -04:00
Philip Eisenlohr
4b02a55f4d
explicit type casting from boolean to int
2016-08-30 16:08:47 -04:00
Philip Eisenlohr
891ac4d585
fixed comma syntax error
2016-08-25 12:17:27 -04:00
Philip Eisenlohr
55d6adf1b8
renamed to reflect more general nature of script
2016-08-25 12:15:41 -04:00
Philip Eisenlohr
85abf84186
generalized to user-specified mapping function instead of hardwired avg
2016-08-25 12:15:03 -04:00
Philip Eisenlohr
64ac05fc26
removed left-over debug output
2016-08-11 14:24:40 -04:00
Philip Eisenlohr
600731b15c
modernized, gracefully add NaN for out-of-bounds mapping
2016-08-11 14:23:29 -04:00
Martin Diehl
6c82641713
added defaults (bugfix)
2016-08-01 16:43:14 +02:00
Philip Eisenlohr
fa3387486d
clarified meaning of possible (global) rotation (lab/crystal frame)
2016-07-31 19:35:10 -04:00
Philip Eisenlohr
79ff040426
sorting and clarification of help, shortening of output labels
2016-07-30 15:07:44 -04:00
Philip Eisenlohr
23a57ec78f
reinstalled "NOQA" keyword for "import math"
2016-07-30 12:52:49 -04:00
Philip Eisenlohr
ab3415d44e
polishing and rearrangement of code snippets
2016-07-30 12:46:00 -04:00
Martin Diehl
c3650a1b00
shebang got reverted
2016-07-30 08:20:57 +02:00
Aritra Chakraborty
6a80c71c0b
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development
2016-07-29 20:42:38 -04:00
Aritra Chakraborty
304fdf1ebe
can deal with "veterans" and "newbies" meaning over ride existing with new
2016-07-29 20:41:15 -04:00
Philip Eisenlohr
0bbf54e0e4
switched to string.format() method
2016-07-29 17:49:29 -04:00
Philip Eisenlohr
afff0b8614
fixed STDOUT error
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no files on command line translate to "filename" being empty list. Cannot test for filename[0] then...
2016-07-29 17:48:40 -04:00
Philip Eisenlohr
4d01e826c5
fixed typo in usage msg
2016-07-25 00:46:11 -04:00
Martin Diehl
03bb0b8a98
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into miscImprovements
2016-07-18 19:36:47 +02:00
Martin Diehl
cd63a92733
using python 2.7 has shebang will also work on mac without symlink
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unless someone uses the 6 year old python 2.6, this should be save
2016-07-18 19:35:35 +02:00
zhangc43
0a2d5e4c2a
add missing newline to header for postResult
2016-07-18 12:29:12 -04:00
Martin Diehl
325e153d3d
import of string not needed
2016-07-18 11:22:53 +02:00
Martin Diehl
e3f83b6d66
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into miscImprovements
2016-07-18 11:22:12 +02:00
Martin Diehl
1b30b186f4
rootRelation keyword was still used
2016-07-18 06:17:22 +02:00
Martin Diehl
0c2b7782d4
reporting correct ID
2016-07-17 18:18:57 +02:00
Martin Diehl
745c012088
fully adopted code from addDisplacement
2016-06-29 20:09:42 +02:00
Martin Diehl
f04b737e4c
Merge remote-tracking branch 'origin/development' into NoCoreModule
2016-06-29 16:11:07 +02:00
Martin Diehl
2c8427eb2a
seems to work now
2016-06-29 12:35:50 +02:00
Martin Diehl
9bf8b6221c
fixed fluct displacement
2016-06-29 12:11:07 +02:00
Martin Diehl
a64388355a
simplified
2016-06-29 11:02:49 +02:00
Martin Diehl
9ea6d3afd7
simplified FFT statements
2016-06-29 10:58:15 +02:00
Martin Diehl
af2404f0f8
no access out of bounds anymore (but incorrect results)
2016-06-27 23:27:30 +02:00
Martin Diehl
8307a4a9ab
trying to get the last things work without the core module
2016-06-27 19:38:12 +02:00
Martin Diehl
259ee072a6
Merge branch 'development' into NoCoreModule
2016-06-27 15:35:46 +02:00
Martin Diehl
b40cbd68bb
"-"sign caused reversed deformation mode
2016-06-27 15:19:02 +02:00
Martin Diehl
aa9a8b21c7
lables is now a method, not an attribute
2016-05-18 18:31:54 +02:00