53b40662ec
now with executable, correct line endings, and ID tags.
2015-02-11 17:26:56 +00:00
d5f9f543ca
Script to generate PNG image from given column (or 2D data in overall ASCIItable) with custom colormap and pixel sizes.
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Supersedes “imageFromData” from “Code” repository.
2015-02-11 17:25:49 +00:00
9eae665365
fixed ‘too many files open’ issue when processing a large list of input tables.
2015-02-11 17:22:47 +00:00
eed00007f9
Re-write the script:
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1. replace curve_fit with leastsq, which supports the analytical Jacobian
2. specify a "class" (contains both residum and jacobian) for each criterion.
3. add the calculation of Jacobian
2015-02-11 16:49:40 +00:00
1b1ed3bbcf
removed unnecessary lines
2015-02-11 06:18:08 +00:00
40a792d785
fixed bug in consistency check
2015-02-10 13:49:47 +00:00
63434c2ddb
corrected error checking for correct type
2015-02-09 08:57:14 +00:00
7edd209ce4
corrected wrong name in add..., more verbose error checking for geom_from...
2015-02-07 22:22:28 +00:00
6140285ddd
small changes (use ip.x instead of 1_ip). Probably we should modify postResults to use the 1_, 2_, 3_, standard notation for ip as well
2015-02-07 18:13:51 +00:00
e4a94aa72b
put changes on algorithm from geom_fromEuclideanDistance into addEuclideanDistance
2015-02-07 17:11:46 +00:00
f3bab46275
addthe Cazacu–Barlat (CZ) yield criterion (3D and 2D), Banabic–Balan–Comsa (BBC) Yield Criterion.
2015-02-07 16:58:57 +00:00
cdb7795956
1. Add default boundary constraint(no constraint) and initial guess to the dictionary
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2. With the boundary constraint of exponential term, now non-quadratic yield criteria (isotropic Barlat 1991, anisotropic Barlar 1991, Hosford) take effect.
2015-02-07 11:07:45 +00:00
0350b1829c
1. Replace curve_fit(see minpack.py) with curve_fit_bound(see damask/util.py), now the boundary constraint can be applied.
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2. Transfer the output information into dictionary 'fittingCriteria', compact subroutine 'fit'.
2015-02-06 14:01:04 +00:00
ce09e992cc
1. Change yieldStress from 'list' to 'numpy.arrary', thanks to Martin's suggestion (3907);
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2. Change '3*3' Cauchy stress tensor to '1*6', now the number of input 'xdata' for fitting is 6*Points, which is less than the former 9*Points.
2015-02-06 13:48:14 +00:00
0b3205a24b
some suggestions how to simplify
2015-02-06 09:29:21 +00:00
4f2c07063b
Fix general Hosford!
2015-02-05 20:18:07 +00:00
2b704b3905
Fix: Tresca, von Mises, Drucker, Hill 1948 criteria.
2015-02-04 16:47:35 +00:00
2d568b49f2
add the output of standard deviation errors;
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fix Hill 48 and anisotropic Barlat 1991
2015-02-04 13:04:34 +00:00
3845c47e61
complement of 3897: add isotropic and anisotropic Barlat 1991 to the dictionary
2015-02-03 12:57:18 +00:00
bef846d294
add isotropic and anisotropic Barlat1991 yield criteria.
2015-02-03 12:54:16 +00:00
55445af9bc
1. add initial guess and weight to the fitting (nonlinear least square regression);
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2. extend the dictionary:fittingCriteria
2015-02-03 12:18:53 +00:00
cc6138ec41
rewrite "def fit()";
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add format output.
2015-02-02 17:41:19 +00:00
fd75772a3f
Fix the bug of calculating principal stresses. Now the fitting result is better for the criteria which expressed in principal stresses.
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Thanks to Martin.
2015-02-02 16:52:28 +00:00
4772efbc45
fixed syntax error
2015-01-23 10:11:12 +00:00
2c9c04eb76
added script to replace all rows of an ASCII table by a single row containing their average
2015-01-23 00:57:10 +00:00
5be9a75cff
fixed indentation
2015-01-22 09:04:01 +00:00
440263f2f0
simplified, removed deprecated synonyms
2015-01-22 09:03:18 +00:00
ed6b4fe50a
fixed issues when having grains and eulers
2015-01-13 16:04:49 +00:00
c08f704dee
added Id + a little help
2015-01-07 19:29:27 +00:00
ca58216134
added missing math module import
2015-01-05 12:25:03 +00:00
3e3c13bf0b
added missing math module import
2015-01-04 21:02:17 +00:00
8dea16c07f
fixed wrong assignment of phase and made orientation comparison robust
2014-12-20 12:42:21 +00:00
5e8fff13d9
worked on the vtk binary out, still some problems with multicomponent datatypes
2014-12-18 21:46:38 +00:00
6604d0f8e8
polishing
2014-12-18 19:26:52 +00:00
9ac62e42df
added possibility to specify number of bins to be sorted in advance to current cleared stage
2014-12-18 18:03:36 +00:00
89f8ba979e
Add x,y coordinates of stereographic projection of given direction (pole) in crystal frame.
2014-12-13 00:12:55 +00:00
f8ce57abc8
removed aliases 'resolution' and 'dimension' for 'grid' and 'size' because some scripts did not have it anyway and the rename happened quite a while ago
2014-12-08 08:48:55 +00:00
c067d0dc69
fixed wrong periodicity treatment
2014-12-05 10:35:56 +00:00
30920801aa
extended for 2D, finds the bounding edges and assigns them 'physical' attribute.
2014-12-04 11:33:06 +00:00
47685ac7c4
added output of script ID do material.config
2014-12-03 10:09:47 +00:00
590106b889
added possibility to add randomly distributed second phase (index = indexGiven+1)
2014-12-02 22:22:11 +00:00
3cfabe3b83
standardized script name reporting
2014-11-18 15:31:39 +00:00
b17dcd7652
added options ’—origin’ and ‘—geom’. Latter interprets the geom-header to derive voxel sizes.
2014-11-18 15:26:59 +00:00
461a3fa979
fixed syntax error and added ‘—render’ option to immediately see output on screen
2014-11-18 15:24:09 +00:00
a3196669ea
exchanged deprecated data array read function
2014-11-18 15:22:00 +00:00
7136db1fd8
fixed syntax error: ’options.error’ —> ‘parser.error’ for error handling
2014-11-18 15:20:57 +00:00
99ffa554eb
added ‘1_*’ to ‘*’ as possible column label indicator
2014-11-18 15:20:10 +00:00
b5ef329f34
changed default position column format from .x,.y,.z to more standard 1_,2_,3_
2014-11-18 15:18:27 +00:00
b656113b11
added missing string import in marc_addUserOutput (introduced with rev 3718) and removed unwanted imports and introduce use of damask.extendableParser in some other scripts
2014-11-18 08:00:45 +00:00
409a75c964
fixed 2 small flaws in geom_fromAng, corrected stringID and stringName in all remaining files in 'pre'
2014-11-16 21:44:46 +00:00
6a3546cee2
script to produce ASCIItable from geom dataset.
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contains best-practice for looping over multiple input files (to avoid error caused by too many open file handles!)
2014-11-14 15:16:00 +00:00
deee3a175a
polishing and simplifications
2014-11-14 14:53:48 +00:00
733e85f6e6
fixed bug in material.config when do not compress the data. Thanks to Noriki for figuring out
2014-11-14 13:53:55 +00:00
2d2eb4e001
using extendable option, numpy as np, etc.
2014-11-07 11:13:14 +00:00
047042ad9f
using extendable option, numpy as np, etc.
2014-11-07 11:07:03 +00:00
7d6670d4cf
fixed table —> theTable flaw in output finalization
2014-11-05 22:17:06 +00:00
52160385a6
alternative expression to parse script filename (scriptID excluding file extension).
2014-11-05 22:05:37 +00:00
9345640dfd
mainly polished for “numpy as np”. added alternative expression to parse script filename (excluding file extension).
2014-11-05 22:04:59 +00:00
35f8b9786e
changed way to sample grid positions when placing primitive object. Should be somewhat more efficient now.
2014-11-05 22:02:40 +00:00
f7da804927
changed file handling to allow for serial processing of large file numbers.
2014-11-05 22:01:11 +00:00
f6741138e7
had badly messed up the file handling in commit 3630. STDIN did not work, files were not checked for existence…
2014-10-29 13:27:40 +00:00
bdd2d55383
small bug fix for last commit
2014-10-24 06:36:01 +00:00
13ba71a314
fixed bug where option.condition was altered in processing of first file, thus preventing additional files from seeing the same user input.
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changed file handle setup to allow for large lists of input files.
2014-10-23 21:23:10 +00:00
e779c2e1e6
specify mesh size
2014-10-21 14:42:13 +00:00
975e42b132
specify which surface(s) you want to tag
2014-10-21 13:57:17 +00:00
8dd575cdbe
now making use of parser options for input arguments
2014-10-17 11:51:22 +00:00
0193578540
now appending the bounding surface information to the gmsh geometry file
2014-10-16 17:23:17 +00:00
7e0c6f420b
added shebang script to make executable, some properties and few improvements. Now giving the bounding surfaces.
2014-10-16 15:53:46 +00:00
dc7a4bb978
using damasks extentable option + correct version string
2014-10-16 14:56:44 +00:00
ff0f619015
started to write a script for finding bounding surfaces from gmsh geo file.
2014-10-16 14:07:25 +00:00
ce1f17c9cb
worked on the binary vtk out needed for large datasets
2014-10-14 07:13:13 +00:00
5e16cdd14f
added support for multiple entries per line
2014-10-13 13:58:26 +00:00
e1530afac7
test for geom_fromTable (does not work for empty black or whitelist)
2014-10-13 09:54:01 +00:00
f4de982182
svn caused trouble due to rename, again some missing files
2014-10-10 12:11:10 +00:00
46d67f63d8
added test for converter from Ricardo's files
2014-10-10 08:54:48 +00:00
57e522566a
updated python style
2014-10-09 17:03:06 +00:00
47c8bfeacb
commented code
2014-10-09 11:01:07 +00:00
d86f091026
some small fixes, reporting still needs update
2014-10-06 12:47:52 +00:00
2836b2fb35
work in progress, extending to more criteria
2014-10-03 09:27:20 +00:00
033a275d82
a bunch of small changes. deleted compiled FFTW libraries
2014-10-02 21:27:03 +00:00
23ee538dcb
shortened syntax. fixed undefined file['croak']
2014-10-02 04:49:46 +00:00
bfe20a3af8
added $Id$ property and LF line endings.
2014-09-29 15:57:31 +00:00
f2d9d66129
improved readibility, fixed negative coordinates, improved output
2014-09-29 15:55:17 +00:00
ff475f1459
first draft of a constraint voronoi tessellation to match grain distribution
2014-09-29 10:19:49 +00:00
496c3d4bc8
added line breaks identifier and $Id$ flag
2014-09-25 21:54:42 +00:00
b85797c109
significant speed improvement for large grids.
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polished messages and fixed error reporting bug.
2014-09-24 23:47:52 +00:00
78ab14806f
fixed bug in parser option type definition
2014-09-21 17:59:06 +00:00
14530b0a76
fixed bug 'the table' instead of 'table'
2014-09-19 15:24:59 +00:00
d07a098724
fixed wrong help introduced with last change on 3Dvisualize
2014-09-19 09:50:26 +00:00
a7d831de06
forgot to import python module
2014-09-15 10:07:52 +00:00
5657119b11
updated post processing test: rotateData is doing something, corrected addDeviator defauls
2014-09-12 14:49:26 +00:00
f2c4db0bb5
correcting help and default, some comments
2014-09-12 14:46:12 +00:00
afb9a2186b
removed explicit default setting: type='string' and action='store'
2014-09-12 14:14:55 +00:00
9ba7851c14
fixed bug in calculation of spherical part. Variables in python functions are intent(inout) in Fortran language!
2014-09-12 13:13:05 +00:00
5f986f3d54
updated to contain latest python improvements
2014-09-10 16:14:37 +00:00
5a159dcdfa
script to add scalar data and/or RGB color tuples to rectilinear VTK file (*.vtr)
2014-09-05 20:28:39 +00:00
e286cf4c74
fixed bug "theTable" instead of "table"
2014-09-03 14:53:12 +00:00
b566eed5a8
fixed error in last commit
2014-08-28 18:50:48 +00:00
5d96f62b44
fixed bug "theTable" instead of "table"
2014-08-28 17:37:27 +00:00
6cdcdecdfa
post processing scripts are working again.
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@Philip: definining one offset for shiftData and one factor for scaleData for tensor/vector/special>1 seems to be more reasonable than per component
2014-08-25 21:13:39 +00:00
Philip Eisenlohr