a72e2db678
Merge branch 'development' into output-rename
2021-03-25 21:03:20 +01:00
3d4590a522
Merge branch 'citation-style' into development
2021-03-25 14:39:44 -04:00
0e57135239
[skip ci] dx.doi.org --> doi.org
2021-03-25 14:33:08 -04:00
3b392281e4
consistent naming in HDF5 output
2021-03-25 19:22:59 +01:00
fe0cd8e5e2
transparently handle orientations/rotations
2021-03-25 15:30:31 +01:00
1ff6a09746
tests/specifications
2021-03-23 18:51:21 +01:00
572c3204d0
let the computer do the work
2021-03-23 14:28:56 +01:00
e0e088eaa8
EBSD dataset for testing
...
use only non-segmented data. Automatically fall back to numeric phase
names if cell_ensemble_data is not found
2021-03-23 13:42:04 +01:00
549b849730
better readable
2021-03-23 12:05:08 +01:00
926b5c657d
material_add can do expansion
2021-03-23 12:01:35 +01:00
005fde2504
homogenization in material was missing
2021-03-23 11:48:35 +01:00
7012099d0c
substituted broken link
2021-03-20 14:34:14 +01:00
1c3d1ee0f2
documented
2021-03-20 13:37:06 +01:00
394fda5f37
improving import from DREAM.3D
...
- no duplicated entries even for non-segmented data
- using phase labels from file
- material.yaml: Dummy homogenization and phase
- tests to ensure correct order and match between Grid and
ConfigMaterial
2021-03-20 12:56:18 +01:00
cdcedd0d44
autodetect base group
2021-03-20 07:26:07 +01:00
35c5bfcc45
reference files for DREAM.3D operations
...
will be used for the configuration of material.yaml and grid (using
symbolic links)
2021-03-19 11:45:04 +01:00
fc172921fb
unified citation style continued
2021-03-19 10:41:47 +01:00
07d79ef4ba
unifying style
2021-03-17 11:25:21 +01:00
ec28fd8a73
polishing
2021-03-12 09:23:05 +01:00
3b27c64709
Merge remote-tracking branch 'origin/development' into config_from_dream3D
2021-03-12 08:11:54 +01:00
e2d4ab427e
explicit path joining with "/" in _result; updated cpTi CRSS
2021-03-09 22:02:49 -05:00
a26e586b14
More general 'delete' (accepts iterables) and backports of '|' and '|=' for union/add.
...
'|=' would work for python 3.9 without extra code, but '|' unfortunately casts 'damask.Config' (subclass of 'dict') to a 'dict'.
2021-03-09 19:15:15 +00:00
4208c4e713
adapted to Table.add being out-of-place
2021-03-08 11:04:49 -05:00
7cbc69a4ca
added "Returns" to help
2021-03-08 11:02:27 -05:00
109ad378c2
corrected help text of as_Rodrigues_vector
2021-03-02 16:26:18 +01:00
7b89cb41f9
Merge branch 'dislotwin-correction' into 'development'
...
dislotwin-correction
See merge request damask/DAMASK!347
2021-02-28 19:45:34 +00:00
464c62e7e7
abandoned integer aliases for projection directions
2021-02-28 12:47:13 +01:00
175d724ded
added keepdims=False option to project_stereographic
2021-02-27 18:38:40 -05:00
ea763fd941
generalized stereographic projection to cope with all three directions (x,y,Z)
2021-02-27 11:15:01 -05:00
bf223e8e00
helpful reporting in case of errors
2021-02-26 06:35:42 +01:00
1d62341811
Fixed missing second-to-last entry in representation list. Polished help texts.
2021-02-26 03:20:28 +01:00
c0e488881e
converted two examples to yaml
2021-02-24 20:13:55 +01:00
2549d7a05a
[skip ci] removed debug print statement
2021-02-24 15:50:06 +01:00
2dea705fa9
polishing/shortening
2021-02-23 19:01:10 -05:00
0b08b3d233
expanded help texts
2021-02-23 18:54:55 -05:00
dcc42204ec
expanded help on material_add
2021-02-23 18:40:32 -05:00
69316f186b
fixed ConfigMaterial.from_table; 2D grid.from_table now acceptable
2021-02-23 11:50:13 -05:00
4a00254dba
shortened material_add and allow for multi-constituent; broken from_table...
2021-02-22 22:47:08 -05:00
0461c404f7
numpy uses __array__ for casting
...
avoids infinite loop of __init__, __getitem__, and shape. Found on
8cf07f6113
2021-02-22 18:52:06 +01:00
5517be5078
warn the caller of deprecated functions
2021-02-22 08:49:44 +01:00
67f0ab2ce8
silence deprecation warning
2021-02-22 08:46:28 +01:00
b00b4bb0ad
more general handling of precision
...
Anaconda on windows does not have np.float128 defined, but aliases
should work
https://numpy.org/devdocs/user/basics.types.html
2021-02-19 17:03:41 +01:00
f5f993435b
make intention clear
2021-02-19 16:34:28 +01:00
ab9661d951
don't see how ':=' should help here
2021-02-19 07:04:34 +01:00
7c6ce525a3
ask for minimum version
2021-02-19 06:51:32 +01:00
f609b61157
Merge branch 'development' into account-for-floating-point-precision-in-orientation
2021-02-15 16:26:25 -05:00
6bbd55d967
exchanged c for x in from_cubochoric
2021-02-15 16:25:36 -05:00
002cfbd085
Merge branch 'account-for-floating-point-precision-in-orientation' into 'development'
...
ensures that at least one orientation in the FZ is found
See merge request damask/DAMASK!337
2021-02-15 20:53:37 +00:00
89e8ca4535
renamed and shortened _separate_arguments()
2021-02-15 11:22:42 -05:00
099cd90890
Merge remote-tracking branch 'origin/development' into python-improvements
2021-02-13 16:51:29 +01:00
fe63adcca4
mimic python error message and ensure that error is raised
2021-02-12 18:20:39 +01:00
9e8a243d6f
avoid name conflict with lattice parameter 'c'
2021-02-12 12:15:08 +01:00
f1b8978e21
accept variables that will be used
...
**kwargs allowed the use of extraneous arguments
2021-02-12 11:24:12 +01:00
958936c449
Merge branch 'development' into polishing-for-release
2021-02-11 21:59:59 +01:00
e8fae6b2a7
simplified
2021-02-11 21:56:53 +01:00
4e31862f0f
avoid repetition
2021-02-10 18:35:13 +01:00
6895ef6b18
always write LF line endings
...
small pitfall: I windows users use a filehandle that results from a call
to open() without the newline option, they get still CRLF line endings
2021-02-10 10:03:35 +01:00
4bcbcb34d0
ensures that at least one orientation in the FZ is found
2021-02-09 23:58:00 +01:00
869307c5ec
temperature not needed for pure mechanics
...
would also require to define thermal homogenization
2021-02-08 22:56:37 +01:00
cab5a5cec7
homogenization 'none' name misleading.
2021-02-04 15:37:40 +01:00
14ce127dc4
fraction --> v
2021-02-04 13:46:01 +01:00
051e3ed0ae
not needed anymore
2021-02-02 12:26:08 +01:00
0f6094890a
simplified
...
damask.environment does not offer any advantage over os.environ for
variables. After 'root_dir' was removed, the whole module became
obsolete
2021-01-15 12:14:05 +01:00
37de561938
shell variables are more robust
...
they will also work if Fortran and python code are installed in
different locations.
2021-01-13 18:53:16 +01:00
d76543f759
better name
2021-01-13 14:57:58 +01:00
a7d998dd48
standard name
2021-01-13 14:53:50 +01:00
4c35da8627
simplified
2021-01-13 11:33:28 +01:00
196902948f
simplified
2021-01-13 09:54:04 +01:00
f4247e0f35
simpler (and scipy compatible)
2021-01-13 09:35:42 +01:00
2d6e6a2370
Rotation composition uses "*"; application of Rotation to object uses "@"; "apply()" works on both
2021-01-12 18:57:33 -05:00
c3c4b05c01
handling point based data enabled
2021-01-12 13:01:11 +01:00
6bffb91951
Added example
2021-01-11 15:16:46 +01:00
6c367ec010
conform to docstring conventions
2021-01-11 15:05:48 +01:00
2951617e28
able to take phaseID into account
2021-01-11 15:02:15 +01:00
dbab3c3a83
dream3D has an extra row at start for grain based data
2021-01-11 14:21:56 +01:00
028d47034d
conversion from dream3D for single phase materials
2021-01-11 13:31:08 +01:00
f0351e403a
removed duplicate test
2021-01-07 11:01:15 -05:00
bde66d85fc
Merge branch 'development' into python-improvements
2021-01-07 10:58:33 -05:00
94cfe28128
polishing help; Rotation.apply(Rotation) now acceptable.
2021-01-06 18:03:10 -05:00
acbb564afc
restored functionalitity for adding list.
...
got accidently lost
2021-01-04 07:23:14 +01:00
d8b4b7e0f5
!= and == work componentwise
2021-01-03 21:52:19 +01:00
f48a446353
compatible with scipy.spatial.transform.Rotation
...
also introduced inplace variants and '/' as multiplicative inverse of
'*'
2021-01-03 16:08:22 +01:00
98723cb0ed
need to handle special case of Re() = 0
...
ensuring that the real part is positive seems to be a good idea on first
sight, but it would be easier to simply acknowledge that qu = -qu
2021-01-03 15:50:15 +01:00
80b8693a66
avoid adding to existing data, i.e. when reading a file
2021-01-03 12:10:39 +01:00
5f1399acc3
consistent behavior with other classes
...
python dictionary operates in-place, so wrappers for out-of-place
behavior let it use like the other DAMASK classes
2021-01-03 12:09:21 +01:00
9a278daa3f
copy not needed
...
YAML writer does not write out references anymore
2021-01-03 12:07:02 +01:00
35ca1ffb0a
consistent copy functionality
2021-01-03 12:03:40 +01:00
6fe1ff8e39
fixed test for rodrigues parametrization
...
for angle close to 180deg, the sign of the axis does not matter
2021-01-03 11:50:45 +01:00
da62daf15d
added test for appending rotation lists; better check for type==list
2020-12-28 12:26:09 -05:00
4796afdd92
fix for broken representation of no-rotation orientations and averaging weights
2020-12-28 12:10:21 -05:00
d8b57680ec
raise NotImplemented when using R*b instead of R@b
2020-12-21 15:47:18 -05:00
6cc78cb41e
Merge branch 'misc-improvements' into 'development'
...
Misc improvements
See merge request damask/DAMASK!302
2020-12-18 15:19:04 +01:00
35f9861818
Fortran standard is 2018
...
will not work for older compilers
2020-12-18 15:19:04 +01:00
5fb0e4908b
Examples reflect actual behavior
2020-12-18 07:09:05 +01:00
403ac693da
need to pass init argument to dict superclass
2020-12-17 18:08:55 -05:00
e11be7e600
preinitialize a ConfigMaterial object with 'constituents','homogenization','phase' keys
2020-12-17 10:49:33 -05:00
2dd520b4a2
P_aim should be independent from P_av
...
P_av is not defined after restart or cutback. Restart with change of
load case is probably still an issue
2020-12-15 08:06:50 +01:00
aad123f41b
Merge branch 'table-getitem' into development
2020-12-12 19:58:42 +01:00
36e4042f0b
removed "where" method from Table class
2020-12-11 19:31:19 -05:00
2e28bc127a
better message in case that GUI is not possible
2020-12-10 23:44:54 +01:00
a881e6e57a
Merge remote-tracking branch 'origin/development' into misc-improvements
2020-12-10 23:41:59 +01:00
32c2de6b91
Ensuring regular spacing for grid
2020-12-10 22:47:30 +01:00
4286fc3b82
Merge branch 'development' into misc-improvements
2020-12-10 20:21:00 +01:00
9b6f5ba9c6
Merge branch 'development' into compressed-hdf5
2020-12-10 00:23:22 +01:00
de1708b20a
missing renames + better help
2020-12-08 00:36:41 +01:00
78192ef3fd
clearer naming + better comments, thanks to @p.eisenlohr
2020-12-07 17:49:37 +01:00
429b84004d
more filters
...
- shuffle: significanlty better compression
- Fletcher32: checksum to detect errors
computational overhead is very small
2020-12-06 19:57:00 +01:00
52e3fb50bc
compress.
...
Datasets are chunked along first timension. Chunk size (1MB for real) is
probably not optimal
2020-12-06 11:44:52 +01:00
000de75617
write orientation as plain array, not derived type
2020-12-06 08:36:16 +01:00
c80e1c5420
less confusing in the standard case, more helpful in the special case
2020-12-05 10:47:42 +01:00
ed286ee09f
Merge branch 'rename-grid-2' into misc-improvements
2020-12-05 09:50:46 +01:00
171d642dbd
rename: Geom -> Grid
2020-12-04 07:50:47 +01:00
0fdefa5e78
renames:
...
after the rename of "grid" to "cell", the name cell should not be used
for the coordinates of the cell centers. In agreement with the names
x_p/u_p for point positions/displacements, now the "point" is used to
refer to the materialpoints (i.e. cell centers)
Additionally, "_node"/"_point" are now suffixes to
"coordinates"/"displacements".
Finally, "coords" is renamed to "coordinates"
2020-12-03 23:59:37 +01:00
ac0a20696c
rename: grid -> cells
2020-12-03 22:16:34 +01:00
ccf1a849fa
Merge branch 'ShowGrainBoundaries' into 'development'
...
Show grain boundaries
See merge request damask/DAMASK!297
2020-12-03 17:13:15 +01:00
4877334986
added getitem and where functionality to Table
2020-12-02 19:25:54 -05:00
97df1ab9b3
reinstated write functionality
2020-12-02 13:04:56 -05:00
d3a5979d25
meaningful result
2020-12-02 14:45:47 +01:00
c880052250
avoid evil eval
2020-12-02 14:37:44 +01:00
aa8f30d746
Merge branch 'development' into ShowGrainBoundaries
2020-12-02 12:50:04 +01:00
1c2cdbd5a1
support of all standard numpy types
...
+ tests
2020-11-30 12:33:21 +01:00
813ef927c4
consistent with "save_XDMF" (capitalized)
2020-11-30 09:28:46 +01:00
4d2bf37193
Merge branch 'lattice-structure-rename' into ShowGrainBoundaries
2020-11-29 20:53:58 +01:00
1d05edd7b3
fixes:
...
- need to get crystal structure as attribute in test (generic function
was removed, because the crystal structure is in general not the same
over the whole domain)
- consistent sorting of attributes
2020-11-29 09:06:47 +01:00
f48f5cb0e8
bugfix/better readable
2020-11-29 08:58:48 +01:00
c712332e87
using consistent names for Bravais lattice in Fortran and Python
2020-11-28 22:38:12 +01:00
a8da1e5ed9
Paraview 5.9 supports datasets of arbitrary length in XDMF
2020-11-27 22:57:15 +01:00
3c1f1af009
more then one direction in file
2020-11-27 20:16:06 +01:00
c2be41b9f6
remove import vtk because unused
2020-11-25 12:53:29 +01:00
31df4c04c8
added test
2020-11-25 12:51:52 +01:00
eb085958f8
polishing
2020-11-25 11:32:07 +01:00
cd58278a01
returns vtk object
2020-11-25 10:39:58 +01:00
7abc32b09c
alternative for if d_s== , not sure it improves the previous
2020-11-24 19:59:46 +01:00
c8b1f8d9f1
shortest possible way i found to include directions in an elegant way
2020-11-24 17:49:58 +01:00
030062d293
Merge branch 'unit-in-vtk' into 'development'
...
Unit in vtk
See merge request damask/DAMASK!288
2020-11-24 16:21:01 +01:00
7fa98ef084
DEcode bytes into str
2020-11-23 20:17:04 +01:00
5ab2847b36
polishing
2020-11-23 20:06:34 +01:00
cbe8160e13
Merge remote-tracking branch 'origin/development' into vector-mechanics
2020-11-23 19:55:34 +01:00
f85dba2835
small polishing
2020-11-23 19:43:19 +01:00
287d44c5df
Merge remote-tracking branch 'origin/development' into unit-in-vtk
2020-11-23 19:19:02 +01:00
7356330cf6
Merge remote-tracking branch 'origin/new_names_result' into development
2020-11-23 11:49:15 +01:00
c58f9f23a1
read old version while resolving merge conflicts
2020-11-22 14:32:32 +01:00
24fabdec22
Merge branch 'development' into vector-mechanics
2020-11-22 12:02:29 +01:00
2de3a6a205
fits better to stretch_left/right
2020-11-19 22:46:52 +01:00
a87596cefc
return rotation type (ensures proper rotation)
2020-11-19 22:36:19 +01:00
662a033d91
adapted to VTR geom files
2020-11-19 14:26:15 -05:00
a82b1adc14
Merge branch 'geom-load-ASCII-autoshift' of magit1.mpie.de:damask/DAMASK into geom-load-ASCII-autoshift
2020-11-19 12:24:09 -05:00
a4b5c2a537
shorter (but still self-explanatory) name
2020-11-19 15:20:44 +01:00
6e5cb60132
general tensor functionality
2020-11-19 15:16:01 +01:00
894a8de9f9
avoid name clash: as_Rodrigues_vector(vector = ...)
2020-11-19 14:31:14 +01:00
1c07152b96
sorted alphabetically
2020-11-19 14:05:59 +01:00
20d0732b2e
output unit to XDMF/vtk
2020-11-19 13:45:40 +01:00
af3a87b197
adjust to new auto-convert of 1-based geom files
2020-11-19 11:34:55 +01:00
5a5dd24687
removed aliases
2020-11-19 10:50:14 +01:00
903c185ee6
distinguish 'file not found' and 'invalid file'
2020-11-19 10:39:41 +01:00
c74e57f225
vtk error handling is not very helpful
2020-11-19 09:59:39 +01:00
96826dca73
Geom.load_ASCII now auto-shifts material indices
2020-11-19 09:40:19 +01:00
cb22c34db2
Geom.load_ASCII now auto-shifts material indices
2020-11-18 18:25:25 -05:00
b9b26cb2cc
output results for all constituents
2020-11-18 23:36:02 +01:00
5359e05fd3
always merge homogenization results
2020-11-18 23:17:12 +01:00
b885e38b3f
better readable
2020-11-18 22:12:23 +01:00
4bf802a28e
fixed documentation
2020-11-18 21:51:37 +01:00
843d7d8cac
Merge remote-tracking branch 'origin/development' into new_names_result
2020-11-18 21:37:52 +01:00
7352431143
vectorized
2020-11-18 20:10:04 +01:00
564ee6c96a
make uvw/hkl keyword-only arguments
...
avoid to prefer one over the other, since they are mutually exclusive
2020-11-18 16:45:53 +01:00
c60d9cde2a
merge 'mechanics' datasets
...
was like that for 'generic'. Needs detailed discussion in future
2020-11-18 15:52:55 +01:00
838a4ea592
[skip ci] fix for scalar values
2020-11-18 14:57:32 +01:00
870c0f7aca
removed aliases
...
required bump of DADF5 version
2020-11-18 14:53:11 +01:00
1c9028d0b1
simplified
2020-11-18 14:01:52 +01:00
89c748fdf1
Merge remote-tracking branch 'origin/development' into vector-mechanics
2020-11-18 13:55:05 +01:00
9a1e8e3c38
for the transition period
2020-11-18 13:28:53 +01:00
7291b95055
avoid pyflake for blank line 6 final
2020-11-18 12:29:10 +01:00
ee5822b721
avoid pyflake for blank line 5
2020-11-18 12:25:08 +01:00
4dbfad74cb
avoid pyflake for blank line 4
2020-11-18 12:24:17 +01:00
eda3837874
avoid pyflake for blank line 3
2020-11-18 12:21:09 +01:00
c681101136
avoid pyflake for blank line 2
2020-11-18 12:19:47 +01:00
33aa888fc7
avoid pyflake for blank line
2020-11-18 12:17:05 +01:00
e8f82d52cc
fix bug
2020-11-18 12:16:08 +01:00
be206d28b3
vectorized and more options
2020-11-18 12:14:12 +01:00
6bedd84759
self-explanatory names
2020-11-18 08:15:04 +01:00
cd8434b991
Merge remote-tracking branch 'origin/development' into python-improvements
2020-11-16 22:57:49 +01:00
c16ad845bc
Merge branch 'modernize-testing' into 'development'
...
Modernize testing
See merge request damask/DAMASK!280
2020-11-16 20:10:38 +01:00
a8fec922d5
show name in title
2020-11-16 17:25:13 +01:00
5a53f8743b
added to docstring
2020-11-16 10:44:33 -05:00
fa25a13264
fixed typo
2020-11-16 10:34:49 -05:00
de20e6b35d
code shortening; list_predefined() --> property "predefined"
2020-11-16 10:23:26 -05:00
5ebde607a2
einsum simplifications
2020-11-16 07:43:20 +01:00
9b9d83d93c
adding '_tensor' not needed
2020-11-16 01:15:39 +01:00
b893967b68
more systematic names and extended docstrings
2020-11-16 01:02:36 +01:00
6f81f5278d
separating general tensor math from mechanics operations
2020-11-16 00:13:34 +01:00
b3955573f6
using new tests
2020-11-15 22:39:47 +01:00
fd8743af5e
clearly distinguish seeds for tessellation and seeds for RNG
2020-11-15 13:49:17 +01:00
1541ac0add
more intuitive use
2020-11-15 12:38:54 +01:00
01d84c1477
testing also functions with graphical output
2020-11-15 11:49:52 +01:00
15af12bbb4
__ne__ is automatically set to !__eq__, __neq__ has no special meaning
2020-11-15 11:38:26 +01:00
51e5dda702
documentation + consistent string formatting
2020-11-15 10:54:20 +01:00
05c1007add
documentation improvments + acceptance of lists
...
example code at respective function, no space in 'or' variable names
(sphinx cannot handle this)
2020-11-15 10:31:01 +01:00
1eb9d494c7
not specific to Orientation class
2020-11-14 19:51:15 +01:00
149fce0a7e
increase test coverage
2020-11-14 19:42:52 +01:00
764aacf2a1
increasing test coverage
2020-11-14 17:54:47 +01:00
Martin Diehl