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DAMASK_EICMD
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1796 Commits

Author SHA1 Message Date
Martin Diehl 002383afc2 solved problem with postprocessing 
- to not 'try' with h5py library, it might have another 'try'. Check
explicitly for empty argument

also some polishing
 2019-09-13 16:01:30 -07:00
Martin Diehl b2b625af3e notes from discussion with Philip 2019-09-13 15:17:46 -07:00
Martin Diehl f83a167414 file mode for high level funtion not useful 2019-09-13 09:49:30 -07:00
Martin Diehl 6f008c5d5f rewrite pointwise add function 
- all vectorized: Much faster
- passing in all relevant information allows to do sanity checks and add
useful meta data in HDF5
- improved readability
 2019-09-13 06:02:42 -07:00
Martin Diehl 3db3e9e762 preparing for use of optional arguments to function 2019-09-11 21:20:14 -07:00
Martin Diehl de313269d9 bugfix 2019-09-11 18:54:54 -07:00
Martin Diehl 953ba53211 adjusting for strict prospector checking 2019-09-11 18:22:33 -07:00
Martin Diehl a6c69a744b do operations vectorized 2019-09-11 17:57:24 -07:00
Martin Diehl 462bb07efd Merge branch 'development' into even-more-HDF5-postprocessing 2019-09-11 16:29:44 -07:00
Martin Diehl bc893762ec no need to inverse a rotation, transpose is faster 2019-09-11 07:29:34 -07:00
Martin Diehl fa2c100d6a need to update microstructure to get grid update 2019-09-04 20:20:55 -07:00
Martin Diehl f415a8cad2 Merge branch 'PythonProspectorRules' into even-more-HDF5-postprocessing 2019-09-04 14:23:07 -07:00
Martin Diehl 28c11cc373 bugfix 
-update function was resetting size if not given
-dim does not work an all terminals, therefore also emph new values in
addition to dim old ones
 2019-09-04 11:14:44 -07:00
Martin Diehl ef285b482f more references + citation style correction 2019-09-04 08:55:05 -07:00
Martin Diehl 6f07a20919 not sure what this code was intended to do 2019-09-03 17:23:26 -07:00
Martin Diehl 3657f81c59 documenting (in accordance with new prospector rules) 2019-09-03 17:18:06 -07:00
Martin Diehl a428a924eb DAMASK default citation style 2019-09-03 16:34:02 -07:00
Martin Diehl 97fc8a4029 following python3 recommendations 2019-09-03 15:44:28 -07:00
Martin Diehl 234019bb4d dummy stuff not needed 2019-09-03 15:41:16 -07:00
Martin Diehl b0d3615d67 more detailed documentation 2019-09-03 15:32:01 -07:00
Martin Diehl 7d48764999 added documentation and references 2019-09-03 15:25:25 -07:00
Martin Diehl a073f36471 update for solver wrappers 2019-09-03 09:48:42 -07:00
Martin Diehl fea16327ac now properly escaped 2019-09-02 23:42:34 -07:00
Martin Diehl d84cef4fab pep8: W605 / invalid escape sequence '\ ' seems to be a false positive 2019-09-02 23:37:52 -07:00
Martin Diehl 9cf4f9537e documenting 2019-09-02 23:23:46 -07:00
Martin Diehl ba395977db adjusting to new prospector 2019-09-02 11:09:03 -07:00
Martin Diehl 34b3beda27 DefaultMap needed for newer paraview 2019-09-02 10:51:32 -07:00
Martin Diehl c51cf8d506 transferring post processing capabilities 2019-07-15 13:55:14 -07:00
Martin Diehl b6bb8a4650 simple strain calculation for DADF5 
further enhancement requires to give optional arguments to
add_genericpontwise
 2019-07-06 21:41:29 -07:00
Martin Diehl b6830b3ac1 Merge branch 'development' into even-more-HDF5-postprocessing 2019-06-14 10:28:22 +02:00
Martin Diehl cede188e76 enable to explicitly set the environment 
required for running MPI processes when mpi4py is imported
 2019-06-07 17:51:27 +02:00
Martin Diehl 1186bd16f5 Merge branch 'development' into even-more-HDF5-postprocessing 2019-06-04 22:39:10 +02:00
Philip Eisenlohr dff690611e fixed origin bug in VTK; VTK can be float; size defaults to 1 as longest dimension 2019-06-03 13:29:30 -04:00
Martin Diehl bf27505faa Merge branch 'development' into geometry-class 2019-05-31 16:21:50 +02:00
Martin Diehl 37de73535d following PEP style guide 2019-05-30 20:08:39 +02:00
Martin Diehl 4cb0ba3803 not needed anymore 2019-05-30 19:26:41 +02:00
Martin Diehl 46f0ad052e direct support for vtk output 
- geom_check can now handle multiple files
- microstructure index is stored as integer in vtk file
 2019-05-30 15:35:45 +02:00
Martin Diehl b00581f1be less picky on allowed datatypes 2019-05-30 13:29:29 +02:00
Martin Diehl 931fa9d36a standardized and cleaned 
-write to file if given
-type casting is done in the geom class
 2019-05-30 10:20:07 +02:00
Martin Diehl f30eda0267 no need to loop over files 
will procude the same file over and over again
 2019-05-30 09:32:37 +02:00
Philip Eisenlohr 17168525b6 use srepr in __repr__ 2019-05-29 18:14:30 -06:00
Martin Diehl 6e790e845a correct rescaling 2019-05-29 19:36:02 +02:00
Martin Diehl 669ca82ce1 formatted return message also on interactive shells 2019-05-28 09:05:10 +02:00
Philip Eisenlohr 1f56ac6a4a streamlining and bugfixing of geom-class 2019-05-27 22:45:34 -06:00
Martin Diehl b69f0efbbc improved and simplified reporting 2019-05-27 22:00:26 +02:00
Martin Diehl 615a4ab40f keep float datatype 
based on the assumption, that no mixed float/int data is stored
 2019-05-27 09:56:15 +02:00
Martin Diehl 6e06764e2d using (enhanced) central functionality 2019-05-27 08:38:02 +02:00
Martin Diehl b5cec797c0 cleaned 2019-05-26 23:03:31 +02:00
Martin Diehl c8dfba89e5 using class 
still a very complex script
 2019-05-26 22:49:05 +02:00
Martin Diehl 0da39b0c69 copy and paste error 2019-05-26 22:08:42 +02:00
Martin Diehl 0039ac9551 always add comment at beginning 
usually, comments are related to the file history
 2019-05-26 21:32:48 +02:00
Martin Diehl 7a500e77b1 not needed (DADF5 is the modern alternative) 2019-05-26 20:53:59 +02:00
Martin Diehl 07c9b8b8f0 avoiding unwanted changes 2019-05-26 20:28:19 +02:00
Martin Diehl feb2340935 self-reporting functionality for updating 2019-05-26 17:58:54 +02:00
Martin Diehl dcb79afc84 more user friendly errors 2019-05-26 12:03:21 +02:00
Martin Diehl be3513d1e0 polishing. 
python imports follow PEP8
 2019-05-26 09:49:56 +02:00
Martin Diehl 9f63d768de do not keep whitespaces 2019-05-25 13:48:38 +02:00
Martin Diehl 875643c363 same style 2019-05-25 10:24:45 +02:00
Martin Diehl 4788fc6046 making use of new class 
@philip: 1D arrangement needed?
 2019-05-25 08:37:02 +02:00
Martin Diehl cf374a04dc using new class 2019-05-25 08:21:00 +02:00
Martin Diehl 7b6003fb32 no need for numpy.loadtxt (not compatible with 'to' and 'of' compression 2019-05-25 08:17:51 +02:00
Martin Diehl 420abfa162 use new class 2019-05-24 22:34:27 +02:00
Martin Diehl f20c8fcffd easier generation and modificaton of grid geometries 
fits better than the general ASCII table class
 2019-05-24 22:30:25 +02:00
Martin Diehl a280f9a4a2 polishing 2019-05-23 17:26:38 +02:00
Martin Diehl f6dda99bfb more post processing functionality 2019-05-23 08:54:20 +02:00
Martin Diehl e7ca371b14 routines to do pointwise operations 2019-05-20 19:56:45 +02:00
Martin Diehl 118c74a268 enable materialpoint output again 
accidently lost during a former commit
 2019-05-16 22:01:12 +02:00
Martin Diehl 339b86f784 bugfix + more verbose reporting 2019-05-16 11:44:03 +02:00
Martin Diehl 9f7fa5393a fix for scalar datasets 2019-05-16 09:31:13 +02:00
Martin Diehl 3c0c0a2cd1 more flexible in selecting data 2019-05-16 00:27:06 +02:00
Martin Diehl c6863a6124 also consider homogenization/materialpoint results 2019-05-15 23:38:24 +02:00
Philip Eisenlohr 4c7af713f1 added explicit method Rotation.fromBasis, which can treat real and reciprocal basis sets 2019-05-14 12:59:21 -04:00
Martin Diehl f3c77cde87 Merge branch 'development' into MiscImprovements 2019-05-06 16:16:39 +02:00
Martin Diehl 9b0d3def1d small changes suggested by Franz 2019-05-05 22:38:06 +02:00
Martin Diehl 39cc9e35ae Merge branch 'development' into orientation_with_averaging 2019-05-05 22:12:09 +02:00
Martin Diehl ebf01dee4f store grid/size at geometry group 
as outlined in the DAMASK results paper
 2019-05-03 06:46:22 +02:00
Martin Diehl b8bf329a74 Merge branch 'development' into MiscImprovements 2019-04-30 00:02:35 +02:00
Martin Diehl 327a8ab757 more details 2019-04-28 12:04:11 +02:00
Martin Diehl c72518e52b reflects current temp files 2019-04-28 07:22:12 +02:00
Martin Diehl a5c620379b tools to build a python wheel distribution 2019-04-26 20:54:58 +02:00
Martin Diehl 1ccc967544 enables auto include 2019-04-26 19:24:22 +02:00
Martin Diehl 1b9355327a WIP: preparing for PIP package 2019-04-26 19:08:59 +02:00
Martin Diehl 009a47ad72 make python package independent from rest of DAMASK 
https://packaging.python.org/guides/single-sourcing-package-version/
 2019-04-25 20:05:42 +02:00
Martin Diehl 64c9a367c0 always install post processing scripts into {$DAMASK_ROOT}/bin 
custom installation directions will be made available by more standard
approaches
 2019-04-25 07:21:42 +02:00
Martin Diehl 53f6a4e030 too specific 
- only works at MPIE
 2019-04-25 06:00:56 +02:00
Martin Diehl 1330730717 inFZ needs 'proper' Rodriques--Franck vector 2019-04-19 09:04:54 +02:00
Martin Diehl b97f10b6ff forgotten changes in last commit + fromRandom 2019-04-19 08:17:02 +02:00
Martin Diehl feca9fe0a0 Again changes to the return values. 
A python function with no return value returns 'None'
 2019-04-19 08:04:04 +02:00
Martin Diehl 9a43c2e4c5 fixed return values 
- homomorph, standardize, etc. are silent in-place operations (return
None)
- homomorphed, standardized, etc. are out-of place operations that
report
 2019-04-19 01:05:48 +02:00
Martin Diehl 25518df80c fixes to quaternion class 
- always store data as float (solves issues with truediv)
- fixed in-place multiplication and division
- consistent handling of "..ed()" functions
 2019-04-19 00:44:12 +02:00
Philip Eisenlohr 4183eeaeca [skip ci] disorientation may return full-fledged orientation obj and aux info, added rotation.standardize(d) 2019-04-18 18:06:00 -04:00
Martin Diehl c4f56703a4 proper definition of homomorph 2019-04-18 17:11:51 +02:00
Martin Diehl 7570b187e7 do explicit homomorphing 
only in cases when the underlying math cannot guarantee that the
resulting quaternion follows the convention
 2019-04-18 16:26:05 +02:00
Martin Diehl e8464814ae explicit is better than implicit 
- if the quaternion does not follow the convention, use
"fromQuaternion(acceptHomomorph=True)"
 2019-04-18 14:46:12 +02:00
Martin Diehl 71b0036323 return rotation as misorientation 2019-04-18 14:26:53 +02:00
Martin Diehl 481aac7952 misorientation calculation did not always follow convention 
- return homomorphed quaternion to ensure that real component is > 0
(equivalent to have axis angle limited to [0, pi]
 2019-04-18 13:46:58 +02:00
Martin Diehl b746b841f7 not needed 2019-04-18 12:04:36 +02:00
Martin Diehl 6b7fd6b7ea visualizing data from DADF5: first prototype 2019-04-18 11:58:17 +02:00
Martin Diehl 7177813710 adding data to geometry 2019-04-17 19:57:16 +02:00
Martin Diehl fdd5b93e7c avoid FPE exceptions 2019-04-17 15:19:41 +02:00
Martin Diehl a6e6db0559 more stable/robust conversions 2019-04-17 12:52:48 +02:00
Martin Diehl 079e683dd1 disorientation returns Orientation, not Rotation 2019-04-17 10:48:18 +02:00
Martin Diehl 3f8c16262e fixed import statement 
previous form only worked in python/damask folder
 2019-04-17 09:45:18 +02:00
Martin Diehl 8609eb6eb7 improved names and layout 2019-04-17 09:34:49 +02:00
Martin Diehl c7c6627dfb don't try to figure out the input 2019-04-17 08:49:26 +02:00
Martin Diehl fa18200447 quaternion is now in separate module 
avoid long modules with multiple, only loosely related classes
 2019-04-17 08:46:03 +02:00
Martin Diehl d842902a76 consistent ordering 
- qu, om, eu, ax, ro, ho, cu
 2019-04-16 21:47:29 +02:00
Martin Diehl 8eb1a35dfb first version of a library to parse HDF5 
- preliminarly called DADF5 (DAMASK HDF5)
- script to write (empty undeformed) geometries is also added
 2019-04-13 11:25:53 +02:00
Philip Eisenlohr 3a7408a213 averaging possible for rotations and orientations; Rodrigues 3Dvector output only at top-level; code reordering 2019-04-12 09:03:47 -04:00
Philip Eisenlohr 3d6eb76da3 equivalentOrientations accepts scalar argument to directly return single rotation object (not single element list) 2019-04-11 19:07:41 -04:00
Philip Eisenlohr 2190c3ef46 fixed serious disorientation bug; sorted transformation functions 2019-04-11 18:32:07 -04:00
Philip Eisenlohr b8285d5749 restored orientation averaging capability 2019-04-11 17:23:04 -04:00
Martin Diehl 019d1a9c5c [skip ci] reference was wrong 2019-04-08 22:23:40 +02:00
Martin Diehl dd51945570 checking for input errors 2019-03-28 07:25:20 +01:00
Martin Diehl 85a535b99c is not used anymore 2019-03-07 22:35:43 +01:00
Martin Diehl 12587be595 was not used anymore 
status bar can be used as a replacement, it does to flood log files as
extensively as the background thread
 2019-03-07 20:48:09 +01:00
Philip Eisenlohr eada10548e [skip ci] no blank line after progress bars 2019-02-27 08:38:06 -05:00
Martin Diehl e88182b007 improved converte, now with test 
still needs to figure out how +P is handled
 2019-02-24 14:39:34 +01:00
Martin Diehl 56781dfa5b fiber was never used here and will be remove anyway 
more user friendly formatting
 2019-02-24 10:32:28 +01:00
Martin Diehl 73f6cb7020 fixed datatype 2019-02-24 09:12:21 +01:00
Martin Diehl d3ac3cc0f5 using new Orientation class 2019-02-24 08:34:20 +01:00
Martin Diehl 9dc8dff4b1 cleaning and adding compatibility layer 2019-02-23 22:35:04 +01:00
Martin Diehl b3455c825e transition to new orientation class 
forward-backward conversion quite stable
 2019-02-23 21:49:05 +01:00
Martin Diehl 93ae5cbd07 Merge remote-tracking branch 'origin/development' into 10-consistent-orientation-conversions-3 2019-02-22 23:05:36 +01:00
Martin Diehl 43376c39d8 addGrainID parses in quaternion 2019-02-22 11:25:39 +01:00
Martin Diehl 907f7ca560 transition to new class 2019-02-21 13:33:22 +01:00
Martin Diehl 88fc37d8a7 some more work on python3 compatible scripts 2019-02-15 16:22:52 +01:00
Martin Diehl 8b82941014 only Abaqus 2019 is available 2019-02-15 14:26:08 +01:00
Martin Diehl c50078bafc short version not needed any more 
Abaqus version is year
 2019-02-15 14:22:26 +01:00
Martin Diehl 608852df83 rotation paper has angle as last component 2019-02-12 10:58:38 +01:00
Martin Diehl 7da8980cc0 bugfixes: wrong shape, wrong conversion 2019-02-12 09:04:35 +01:00
Martin Diehl 336a80091f rodrigues is 4-vector with rotation being the last component 
established a single source of truth for length
 2019-02-12 08:59:26 +01:00
Martin Diehl 97ac437686 more user friendly constructors 2019-02-12 08:14:27 +01:00
Martin Diehl ef3fc0b58a bugfix: wrong array indexing 
rotation of meshgrid tuple implemented
 2019-02-12 07:42:46 +01:00
Martin Diehl 4215ae3888 rotation of matrix is defined in class 2019-02-12 06:32:26 +01:00
Martin Diehl e47c275e0c unknown encoding caused problem (on python2?) 2019-02-12 06:18:21 +01:00
Martin Diehl 48b0307fab using new rotation class 
cannot rotate matrices (3,3) and (3,3,3,3) at the moment
 2019-02-12 00:27:13 +01:00
Martin Diehl 7ee933b79d Rotation class 
uses (and hides) Quaternion2. Should replace Quaternion class.
Orientation class should inherit from Rotation and adds symmetry.
 2019-02-11 23:50:02 +01:00
Martin Diehl e931b716fd conversion routines from Marc de Graefs 3D rotation repository 
Python version available on https://github.com/MarDiehl/3Drotations
 2019-02-11 23:15:19 +01:00
Martin Diehl 40740b831e reverted code removal 
was not "just commented out" but served as documentation. now easier to
see
 2019-02-04 00:10:49 +01:00
Martin Diehl 9a4e9e62b6 using new rotation class 2019-02-01 20:28:51 +01:00
Martin Diehl 878331e5e9 this code was never used and is quite old 2019-02-01 19:29:19 +01:00
Philip Eisenlohr e6fe312f85 Corrected documented value for P (= -1!). Instead of repeating the assignment P=-1 in multiple internal functions, it might be advisable to define a class-wide parameter? 2019-02-01 14:04:55 +01:00
Martin Diehl 11a509970b some comments 2019-02-01 10:17:20 +01:00
Martin Diehl 45d11f81b0 python cleaning 2019-01-05 10:55:28 +01:00
Martin Diehl 02ab55d4b3 python reflects content better than lib 2019-01-05 10:52:39 +01:00