Commit Graph

666 Commits

Author SHA1 Message Date
Martin Diehl f857353e16 Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development 2016-03-11 12:49:47 +01:00
Martin Diehl b0dedb8cbd =addOrientation can do the same (and more) 2016-03-09 19:02:28 +01:00
Philip Eisenlohr b933359f17 clarified text of error message complaining about wrong input dimension 2016-03-09 12:28:36 -05:00
Martin Diehl 93d7643875 no long lines anymore and prospector is also happy 2016-03-03 14:44:29 +01:00
Martin Diehl 9fa49b8584 vtk files, mainly removed from vtk import * 2016-03-02 13:52:33 +01:00
Martin Diehl e89923d6d3 next round 2016-03-02 11:11:20 +01:00
Martin Diehl 5d7e138a9b long line 2016-03-02 10:55:21 +01:00
Martin Diehl f77de7ac6e adjusting style (mainly long lines an "== None") 2016-03-02 10:52:24 +01:00
Martin Diehl 043f2faeb3 line too long 2016-03-01 21:59:59 +01:00
Martin Diehl 98476ea29c more improved scripts 2016-03-01 21:35:59 +01:00
Martin Diehl 9cfc27d295 line too long (132 lines max code, like Fortran, 159 including comments, Python standard) 2016-03-01 21:18:32 +01:00
Martin Diehl 80dc23d93d following "prospector -t pep8 -t pyflakes -t dodgy -t profile-validator -t pep257" 2016-03-01 21:11:43 +01:00
Martin Diehl e55d0ae3ca further attemps to make it conform with best python practice 2016-03-01 20:44:43 +01:00
Martin Diehl 6eb170bc07 still struggling with prospector 2016-03-01 19:37:31 +01:00
Martin Diehl 3b33d320b1 getting pyflakes to ignore 2016-03-01 19:06:00 +01:00
Martin Diehl 2a50c6bf86 using prospector --tool=dodgy --tool=pyflakes -M to find python flaws 2016-03-01 18:25:14 +01:00
Martin Diehl 7c9d344601 python files now report their version depending on VERSION file in $DAMASK_ROOT 2016-01-27 17:06:00 +00:00
Martin Diehl c710709b1a example Makefile typically does not work, deleted 2015-12-15 14:34:03 +00:00
Martin Diehl 19ddbc9b21 fixed typo and simplified 2015-12-15 06:16:47 +00:00
Martin Diehl d76fcb4be8 was giving wrong results 2015-12-05 21:34:39 +00:00
Martin Diehl 7eb7a4e8cd changed to use routine for symmetric matrices as ascii table cannot handle complex number anyway. further advantage: eigvals and eigvectors will be odered 2015-12-04 22:34:19 +00:00
Philip Eisenlohr 35202494c2 fixed issue caused by using -r twice as option label. 2015-12-04 04:33:23 +00:00
Philip Eisenlohr 784c78a3b0 removed defunct option to output labels as column vector. 2015-12-04 04:31:53 +00:00
Philip Eisenlohr 937634d703 added group shuffling (i.e. exchanging unique values) 2015-12-04 01:17:45 +00:00
Philip Eisenlohr 55b33e5597 added option “inplace” to directly modify VTK file instead of creating copy_added. 2015-12-02 23:10:14 +00:00
Martin Diehl f49091c952 addDeformedConfiguration without core module 2015-12-02 20:53:02 +00:00
Martin Diehl 0ffcb7fdaf cleaning 2015-12-01 16:37:20 +00:00
Martin Diehl 40c2a5dd6d differentiate name for undeformed and deformed coordinates makes sense. Still not happy with the naming though 2015-11-20 15:58:32 +00:00
Philip Eisenlohr 4c51c15795 changed option to —coordinates.
gracefully extend points to be 3D.
2015-11-14 01:52:31 +00:00
Philip Eisenlohr 2c9f9981e2 polishing of addRectiliearGridData.
subsumed functionality of addVoxelgridData into it.
2015-11-10 01:49:32 +00:00
Philip Eisenlohr ccf7530121 added output selection “rodrigues” 2015-11-10 01:34:10 +00:00
Chen Zhang fe1dbf2ea0 output file name now contains both position and mode.
e.g. ${prefix}_ipinitialcoord(point).vtr
2015-11-03 21:44:36 +00:00
Philip Eisenlohr ad06fc1a77 fixed buggy mapIncremental behavior for anything else than averaging (the standard case luckily…) 2015-10-27 20:16:24 +00:00
Martin Diehl ebf20f2ebc unified style and other minor improvements 2015-10-15 19:51:27 +00:00
Aritra Chakraborty 723f135177 can now handle tiling of values (scalar [string,number] spread out to vector and such) 2015-10-09 14:22:41 +00:00
Philip Eisenlohr 196afb9b31 adopted change in named argument (strict -> SST) for disorientation 2015-10-09 13:06:51 +00:00
Martin Diehl fc9d290339 unified structure and names, added test for vtk{point/voxel}cloud 2015-10-09 11:24:26 +00:00
Martin Diehl 1bd8167445 requires core module and is most likely not used.
When needed, a Complete, lean redesign is simpler than updating to current coding style
2015-10-06 18:11:58 +00:00
Aritra Chakraborty 22048cb546 fixed a bug 2015-10-02 01:59:59 +00:00
Philip Eisenlohr 863fe5ddf0 needs modules “math” and “random” for user-supplied conditions…
(do not remove through pyflakes—shall we introduce dummy code to keep the modules “active”?)
2015-09-29 22:27:07 +00:00
Harsha Phukan 202ee00049 Eliminated redundant searches for similar orientations in neighboring points…speeds up script by 2 orders of magnitude 2015-09-28 19:03:24 +00:00
Martin Diehl 55dc2b419a warn if unexpected file size is encoutered 2015-09-24 17:07:27 +00:00
Martin Diehl f4d4a8e1ec adopted philips changes for reporting, using pyflakes to clean up 2015-09-24 09:24:42 +00:00
Tias Maiti 3c901e5549 added option for Euler angle output in degrees 2015-09-23 23:05:28 +00:00
Harsha Phukan fb48719283 fixed critical bugs 2015-09-15 19:02:59 +00:00
Martin Diehl 6f20651250 copy and paste error and new interface for test 2015-09-12 19:29:34 +00:00
Aritra Chakraborty 6683c1fb73 fixed a bug 2015-09-12 16:34:31 +00:00
Martin Diehl 5f9fae1b75 simplified reporting using "emph" 2015-09-11 12:55:43 +00:00
Philip Eisenlohr e0d5cef047 Script to merge multiple ASCIItables. Stops at end of shortest one. 2015-09-09 22:22:29 +00:00
Martin Diehl 70f906a2c4 follow new syntax and bugfix, marc 2014 is default 2015-09-09 16:45:49 +00:00
Tias Maiti c9dcb41bac fixed sorting logic to respect numerical values of vector data (i.e. 1,2,3,….,10,11,… instead of 10,11,12,1,2,…) 2015-09-08 23:55:44 +00:00
Noriki Fujita c2d27d56fa updated to new ASCII table style 2015-09-08 15:26:40 +00:00
Noriki Fujita 9a2c49ff50 corrected label header 2015-09-08 13:45:46 +00:00
Martin Diehl cf90b764f8 calculation was for nyquist freq not fully correct.
See Notes on FFT-based differentiation
Steven G. Johnson, MIT Applied Mathematics
Created April, 2011, updated May 4, 2011:
2015-09-05 11:51:36 +00:00
Martin Diehl 08f8746182 made some more scripts working again 2015-08-31 21:22:44 +00:00
Philip Eisenlohr 8ff79e1eb0 NaN now considered transparent 2015-08-31 17:41:00 +00:00
Philip Eisenlohr 8f79744f2c now works with (rounded) floating point numbers as mapping indices 2015-08-31 16:01:11 +00:00
Martin Diehl 6100185855 switch to new ASCII table class was buggy, using damask.util.emph 2015-08-31 11:00:45 +00:00
Aritra Chakraborty 115518a2c8 minor changes in commit and setting the script ID properly 2015-08-29 15:10:43 +00:00
Aritra Chakraborty cff6307779 Update existing value(s) to expression(s) respecting condition. 2015-08-29 00:54:45 +00:00
Philip Eisenlohr d8afe9be23 Add scalars, vectors, and/or an RGB tuple from an ASCIItable to existing VTK rectilinear grid (.vtr/.vtk). 2015-08-25 00:39:37 +00:00
Aritra Chakraborty cec6d7d220 for generating rectilinear grid of either cell type or point type from ASCII table. 2015-08-24 20:48:50 +00:00
Philip Eisenlohr 7961b486cb now compatible with updated Orientation.disorientation() output, i.e., select item [0] (the quaternion). 2015-08-24 14:20:09 +00:00
Philip Eisenlohr c215139ce1 now works with recent changes of ASCIItable and with STDIN to STDOUT. 2015-08-24 14:01:24 +00:00
Philip Eisenlohr afc88c7029 now works with recent changes of ASCIItable. 2015-08-24 13:42:29 +00:00
Philip Eisenlohr 38992fdc37 now use outsourced damask.util methods 2015-08-23 23:19:40 +00:00
Philip Eisenlohr 63d5506388 adopting further simplifications provided through ASCIItable class. 2015-08-20 19:42:05 +00:00
Philip Eisenlohr 9439cf7278 add cumulative (first to current) values of given labels to table 2015-08-20 19:40:45 +00:00
Martin Diehl 2a13d78196 did not run 2015-08-18 17:24:15 +00:00
Philip Eisenlohr 70daa8663f adoption of new ASCIItable API 2015-08-18 14:37:32 +00:00
Martin Diehl ca1fe6bb82 updated to new ASCII table style 2015-08-18 07:56:03 +00:00
Tias Maiti d0b75b5a10 fixed table.croak error in last commit 2015-08-18 04:41:36 +00:00
Tias Maiti befd6aa7ff fixed stderr output (croaking..) as per new ASCII table style 2015-08-18 04:33:45 +00:00
Aritra Chakraborty ac7f443595 adopted new ASCIItable API 2015-08-13 21:25:08 +00:00
Martin Diehl 7ca1e77495 bug fixing 2015-08-13 08:32:09 +00:00
Philip Eisenlohr 3e65c324de adopted changes in ASCIItable API 2015-08-12 21:52:33 +00:00
Martin Diehl 1149053c61 updated to new ASCII table style 2015-08-12 20:59:10 +00:00
Martin Diehl 35863e0229 fixed averageDown and made it's test running 2015-08-12 13:43:05 +00:00
Martin Diehl bceeb0964c corrected calculation of expected file size for legacy files beyond the 4 GB limit 2015-08-10 18:48:48 +00:00
Tias Maiti 126cea24ce fixed syntax and undefined variable calling errors 2015-08-09 22:12:49 +00:00
Philip Eisenlohr a4772343b0 adopted new ASCIItable API. some polishing. 2015-08-07 22:08:54 +00:00
Philip Eisenlohr d4e748b654 outsourced multiple repetitive functions into ASCIItable class.
changed ASCIItable API from file-handles to filenames.

adopted these changes in pre and post processing scripts.

unified behavior and look.

fixed bugs here and there.

improved functionality.
2015-08-07 19:03:26 +00:00
Philip Eisenlohr 020a3e2634 superfluous since same can be (even more flexibly) accomplished with:
reLabel -l old -s old+tag
2015-07-26 00:41:42 +00:00
Philip Eisenlohr 0db33f21b5 superfluous since same can be accomplished with:
showTable -l -d (labels and data)
2015-07-26 00:39:32 +00:00
Chen Zhang 657ed7ed35 group voxels/pts by orientation and position, require spicy. 2015-07-24 13:30:33 +00:00
Philip Eisenlohr e08b7bd02e forgot to rescale transparency mask by pixelsizes. 2015-07-16 22:34:26 +00:00
Tias Maiti 3c9d6df889 fixed typo in last commit 2015-07-15 18:15:39 +00:00
Tias Maiti 6ebc490207 fixed broken functionality by adopting new ASCIItable class output for data_readArray(). 2015-07-15 16:57:03 +00:00
Philip Eisenlohr dce0501358 script to rename labels in an ASCIItable 2015-07-10 16:28:01 +00:00
Philip Eisenlohr f8658ffea1 added “gap” value to render pieces of resulting image transparent. 2015-07-07 14:53:55 +00:00
Philip Eisenlohr 812d17f91c streamlined column processing based on recently introduced asciitable functionality. 2015-07-01 15:48:34 +00:00
Martin Diehl ef243d3e19 added references 2015-06-30 14:52:48 +00:00
Philip Eisenlohr 47249bb52a added possibility to scale deformation fluctuation field. 2015-06-29 09:44:49 +00:00
Philip Eisenlohr 9b1f16e99e report data range.
gracefully deal with constant field (below 1e-8 noise).
2015-06-19 11:36:21 +00:00
Tias Maiti 94423cc7ac added scriptID line “ removed during last commit” 2015-06-17 19:47:50 +00:00
Tias Maiti 012c830eff removed writing of debugging statement to final output 2015-06-17 19:44:01 +00:00
Philip Eisenlohr e440305532 streamlined ASCIItable error checking. 2015-06-17 06:52:43 +00:00
Philip Eisenlohr 5cc7b60a88 simplified processing of ASCIItables by utilizing the improved class methods.
modernized file looping.
2015-06-16 17:21:24 +00:00
Philip Eisenlohr c089ff9256 now with $ID$ and correct line endings… 2015-06-15 18:13:06 +00:00
Philip Eisenlohr 6086baba52 Generate PNG image from scalar data on grid deformed by (periodic) deformation gradient. 2015-06-15 18:12:38 +00:00
Philip Eisenlohr 37792f67df automatically figure dimension of labels to tag. 2015-06-13 11:55:20 +00:00
Philip Eisenlohr e243632eb5 simplifications by adopting functionality provided by new asciitable class methods. 2015-06-08 05:07:14 +00:00
Martin Diehl d99e34d870 typo caused problems with more than one tensor 2015-06-06 15:42:29 +00:00
Philip Eisenlohr 129446e687 simplified script. deals now only with single format at a time. result is printed to STDOUT unless “basename” option specified. 2015-06-06 11:12:07 +00:00
Philip Eisenlohr bb9e080790 input file handling now save for large file count.
reshape input rotation matrix to (3,3).
2015-06-05 11:47:27 +00:00
Philip Eisenlohr 5adbe74b10 changed library function name table.labels_index() to table.label_index() 2015-06-05 11:44:17 +00:00
Martin Diehl 2877066a6c removed debug statement and simplified 2015-06-04 08:51:10 +00:00
Yang Su bb677a26aa added interface for predefined colormaps 2015-05-29 18:50:54 +00:00
Yang Su 92654dc2cd fixed syntax bug, instantiating of Color object, and file closure. 2015-05-29 18:36:09 +00:00
Philip Eisenlohr 54746c85d3 fixed bug for only blacklisting. 2015-05-28 22:31:32 +00:00
Philip Eisenlohr c327735c0d order of whitelist is maintained in output (only if no blacklist is specified). allows to rearrange column order in tables. 2015-05-27 23:02:11 +00:00
Harsha Phukan 4107d5d1d2 Script to calculate Quaternion from input orientation matrix 2015-05-26 06:38:48 +00:00
Martin Diehl 5900fa4bf5 corrected defaults and simplified loops 2015-05-25 10:49:20 +00:00
Martin Diehl 1f160dfd72 FFT was at single precision only 2015-05-24 16:35:37 +00:00
Martin Diehl e8fb49edc6 missing bracket 2015-05-22 06:17:35 +00:00
Martin Diehl 737e474cea consistent handling of random number per file and always reporting as comment, fix for permuteData needed because of new asciitable behavior 2015-05-22 05:56:49 +00:00
Martin Diehl fbfa55e910 adjusted to new table style and naming of output 2015-05-22 04:57:05 +00:00
Philip Eisenlohr f363d81de5 simplified column parsing 2015-05-21 21:54:47 +00:00
Yannick Naunheim 2349e6c79c standard way of reporting 2015-05-21 16:04:19 +00:00
Philip Eisenlohr 14b921f6d5 corrected help text. 2015-05-21 00:13:50 +00:00
Philip Eisenlohr df5dd98576 simplified boolean dictionaries to “if else” constructs. 2015-05-21 00:13:11 +00:00
Philip Eisenlohr acc2cb656b simplifications due to better functionality available through asciitable.py
output filename format has slightly changed: binned-X-Y_weighted-W_
2015-05-21 00:08:32 +00:00
Philip Eisenlohr 439d778cc0 simplified column check.
fixed typos and improved help.
2015-05-20 23:21:35 +00:00
Philip Eisenlohr 973f092fd9 similar to imageData but uses RGB triplet as color value instead of mapping a scalar.
Can only use columnar data and not 2D arrays, though.
2015-05-19 21:15:15 +00:00
Philip Eisenlohr ee65b269ad simplified data column determination. 2015-05-19 21:14:19 +00:00
Harsha Phukan f7faa3eeca finally fixed the bug in the transformation and incorporated rotation to conform to TSL convention 2015-05-18 22:28:24 +00:00
Martin Diehl 03fef5fd6e simplified option parsing 2015-05-15 13:49:16 +00:00
Martin Diehl 6a38b4396f simplified help 2015-05-15 13:34:52 +00:00
Martin Diehl a3bed5cc42 short options conflicting with typical use 2015-05-15 10:33:32 +00:00
Martin Diehl a451a69c2c corrected default type (only list for 'extend') 2015-05-14 18:48:15 +00:00
Aritra Chakraborty 3e8f16c515 range parameter is now autoscaled to account for -log option, i.e. range is always given as bounds of original data 2015-05-13 13:45:26 +00:00
Philip Eisenlohr b0a37497a1 fixed buggy coordinate transform. 2015-05-12 15:30:00 +00:00
Martin Diehl 6a98c7efad simplified option parsing 2015-05-11 20:12:31 +00:00
Martin Diehl 2102fadfc7 improved help for automatic documentation 2015-05-11 19:47:52 +00:00
Philip Eisenlohr 537c42d146 script to transform coordinate system at APS beam line 34-ID-E from X,Y,Z,F to strain x,y,z 2015-05-11 14:15:50 +00:00
Martin Diehl eff71b418b now working with corrected asciitable 2015-05-10 20:59:23 +00:00
Martin Diehl b60f868a76 renumbering asciitable when readArray for selected columns only
test no longer for deleteColumn
2015-05-10 11:29:11 +00:00
Martin Diehl 8bf7a7ef6a some beautifications 2015-05-10 10:58:32 +00:00
Martin Diehl c0a9141c8f updated help to enable automated documentation 2015-05-10 10:56:02 +00:00
Martin Diehl a03b1ede99 improved help for automatic documentation 2015-05-10 08:59:21 +00:00
Martin Diehl d87b70fe49 filterTable can do the job 2015-05-09 21:33:17 +00:00
Martin Diehl 18831e0e80 improved help for automatic documentation and simplified some scripts 2015-05-09 21:32:23 +00:00
Martin Diehl 47b8605733 improved help for automatic documentation and simplified some scripts 2015-05-09 13:01:31 +00:00
Martin Diehl 59e546e3d7 improved help for automatic documentation and simplified some scripts 2015-05-09 12:45:30 +00:00
Philip Eisenlohr cb42fb9c5d clarified help text. 2015-05-05 16:58:56 +00:00
Philip Eisenlohr 58b3d017bd changed option name from “invertColor” to “invert” 2015-05-01 17:58:10 +00:00
Philip Eisenlohr c05df20370 throw error message when DAMASK output obviously not present in T16 file 2015-04-28 17:54:00 +00:00
Martin Diehl 895421e677 changed from core module fftw to fftwpack from latex, tolerances need to be less strict 2015-04-24 08:07:13 +00:00
Philip Eisenlohr 790aa32b1b fixed string to character splitting of weight column label 2015-04-13 20:24:03 +00:00
Philip Eisenlohr 4bcc80911e changed grid to float from (wrong) integer type.
row and column probability density normalization now takes place BEFORE limiting data range.
2015-04-13 19:55:28 +00:00