Commit Graph

502 Commits

Author SHA1 Message Date
Martin Diehl e8fb49edc6 missing bracket 2015-05-22 06:17:35 +00:00
Martin Diehl 737e474cea consistent handling of random number per file and always reporting as comment, fix for permuteData needed because of new asciitable behavior 2015-05-22 05:56:49 +00:00
Martin Diehl fbfa55e910 adjusted to new table style and naming of output 2015-05-22 04:57:05 +00:00
Philip Eisenlohr f363d81de5 simplified column parsing 2015-05-21 21:54:47 +00:00
Yannick Naunheim 2349e6c79c standard way of reporting 2015-05-21 16:04:19 +00:00
Philip Eisenlohr 14b921f6d5 corrected help text. 2015-05-21 00:13:50 +00:00
Philip Eisenlohr df5dd98576 simplified boolean dictionaries to “if else” constructs. 2015-05-21 00:13:11 +00:00
Philip Eisenlohr acc2cb656b simplifications due to better functionality available through asciitable.py
output filename format has slightly changed: binned-X-Y_weighted-W_
2015-05-21 00:08:32 +00:00
Philip Eisenlohr 439d778cc0 simplified column check.
fixed typos and improved help.
2015-05-20 23:21:35 +00:00
Philip Eisenlohr 973f092fd9 similar to imageData but uses RGB triplet as color value instead of mapping a scalar.
Can only use columnar data and not 2D arrays, though.
2015-05-19 21:15:15 +00:00
Philip Eisenlohr ee65b269ad simplified data column determination. 2015-05-19 21:14:19 +00:00
Harsha Phukan f7faa3eeca finally fixed the bug in the transformation and incorporated rotation to conform to TSL convention 2015-05-18 22:28:24 +00:00
Martin Diehl 03fef5fd6e simplified option parsing 2015-05-15 13:49:16 +00:00
Martin Diehl 6a38b4396f simplified help 2015-05-15 13:34:52 +00:00
Martin Diehl a3bed5cc42 short options conflicting with typical use 2015-05-15 10:33:32 +00:00
Martin Diehl a451a69c2c corrected default type (only list for 'extend') 2015-05-14 18:48:15 +00:00
Aritra Chakraborty 3e8f16c515 range parameter is now autoscaled to account for -log option, i.e. range is always given as bounds of original data 2015-05-13 13:45:26 +00:00
Philip Eisenlohr b0a37497a1 fixed buggy coordinate transform. 2015-05-12 15:30:00 +00:00
Martin Diehl 6a98c7efad simplified option parsing 2015-05-11 20:12:31 +00:00
Martin Diehl 2102fadfc7 improved help for automatic documentation 2015-05-11 19:47:52 +00:00
Philip Eisenlohr 537c42d146 script to transform coordinate system at APS beam line 34-ID-E from X,Y,Z,F to strain x,y,z 2015-05-11 14:15:50 +00:00
Martin Diehl eff71b418b now working with corrected asciitable 2015-05-10 20:59:23 +00:00
Martin Diehl b60f868a76 renumbering asciitable when readArray for selected columns only
test no longer for deleteColumn
2015-05-10 11:29:11 +00:00
Martin Diehl 8bf7a7ef6a some beautifications 2015-05-10 10:58:32 +00:00
Martin Diehl c0a9141c8f updated help to enable automated documentation 2015-05-10 10:56:02 +00:00
Martin Diehl a03b1ede99 improved help for automatic documentation 2015-05-10 08:59:21 +00:00
Martin Diehl d87b70fe49 filterTable can do the job 2015-05-09 21:33:17 +00:00
Martin Diehl 18831e0e80 improved help for automatic documentation and simplified some scripts 2015-05-09 21:32:23 +00:00
Martin Diehl 47b8605733 improved help for automatic documentation and simplified some scripts 2015-05-09 13:01:31 +00:00
Martin Diehl 59e546e3d7 improved help for automatic documentation and simplified some scripts 2015-05-09 12:45:30 +00:00
Philip Eisenlohr cb42fb9c5d clarified help text. 2015-05-05 16:58:56 +00:00
Philip Eisenlohr 58b3d017bd changed option name from “invertColor” to “invert” 2015-05-01 17:58:10 +00:00
Philip Eisenlohr c05df20370 throw error message when DAMASK output obviously not present in T16 file 2015-04-28 17:54:00 +00:00
Martin Diehl 895421e677 changed from core module fftw to fftwpack from latex, tolerances need to be less strict 2015-04-24 08:07:13 +00:00
Philip Eisenlohr 790aa32b1b fixed string to character splitting of weight column label 2015-04-13 20:24:03 +00:00
Philip Eisenlohr 4bcc80911e changed grid to float from (wrong) integer type.
row and column probability density normalization now takes place BEFORE limiting data range.
2015-04-13 19:55:28 +00:00
Tias Maiti 5257a2161f added options for x and y normalization 2015-04-09 06:45:21 +00:00
Martin Diehl 57a2c90d30 corrected according to vtk specification and remove an unused option 2015-04-08 18:48:35 +00:00
Martin Diehl 0544706c7b corrected help for legacy format 2015-04-08 12:51:40 +00:00
Martin Diehl 92a67e1a9d geom_fromAng.py crashed when found empty line (eg. at the end of the file), now fixed 2015-04-01 14:42:25 +00:00
Martin Diehl a1956436be fixed bug introduced last time when searching for keywords in spectralOut header
made reading in of header more robust by explicitly using the information given by fortran specifies the data length
introduced a legacy mode again, now it is used to read old spectralOut files prior to rev 4017
2015-04-01 10:02:21 +00:00
Philip Eisenlohr 38943c1e94 improved help 2015-03-29 15:37:40 +00:00
Martin Diehl 913c5347a5 removed handling for old legacy format (we might introduce a new one) 2015-03-29 09:08:42 +00:00
Martin Diehl 66d4ff097f removed obsolete comment 2015-03-28 11:44:17 +00:00
Martin Diehl 8a30021202 cleaned up core modul 2015-03-27 14:10:18 +00:00
Pratheek Shanthraj 1ee81e74ea more patches to get the tests running again:
- fixed increment counting in postResults to current output scheme

- corrected node coordinates calculation

- some work on restart (restart test still not running)
2015-03-26 21:19:28 +00:00
Pratheek Shanthraj fe4373a9f9 updated post processing script for MPI IO spectralOut file 2015-03-25 16:09:56 +00:00
Martin Diehl 1a3bfc7d1f updated according to new convention for ip and nodes 2015-03-24 13:52:40 +00:00
Martin Diehl 12cb5e56fe fixed interpretation 'spectralOut' header. Seem to have been buggy all the time, but manifested itself only after keyword change. Also added ':' after keywords to be more robust 2015-03-15 15:29:38 +00:00
Martin Diehl df2ee87a7c corrected help 2015-03-13 14:47:22 +00:00
Martin Diehl c4f639dbfb prevent crash in option parsing 2015-03-13 14:46:40 +00:00
Martin Diehl def6d6b878 re-introduced determination of elem column 2015-03-12 06:20:40 +00:00
Bret Dunlap 3f340ffac9 fixed bug for table data without labels in header 2015-03-11 20:39:14 +00:00
Martin Diehl 72efc7b30c renamed resolution -> grid, dimension -> size 2015-03-11 08:55:48 +00:00
Martin Diehl 0dde6539ed renamed from 1_ip to 1_ipinitialcoord 2015-03-11 07:22:11 +00:00
Martin Diehl eb1561b528 changed postprocessing to use 1_ip instead of ip.x etc, plus corrected test files headers 2015-03-10 21:15:05 +00:00
Martin Diehl 271c9eed8b use 1_ip instead of ip.x
Old format still as fallback option to support legacy files
2015-03-09 12:52:43 +00:00
Martin Diehl 4d587b1bf9 introduced 'alias' for ip.x by first searching for 1_ip 2015-03-09 11:32:16 +00:00
Philip Eisenlohr 639b030c65 shortened code for opening input file list 2015-03-06 17:04:44 +00:00
Tias Maiti 654aacf207 removed invalid options (options.packing, options.shift) 2015-03-05 21:41:53 +00:00
Philip Eisenlohr 53b40662ec now with executable, correct line endings, and ID tags. 2015-02-11 17:26:56 +00:00
Philip Eisenlohr d5f9f543ca Script to generate PNG image from given column (or 2D data in overall ASCIItable) with custom colormap and pixel sizes.
Supersedes “imageFromData” from “Code” repository.
2015-02-11 17:25:49 +00:00
Philip Eisenlohr 9eae665365 fixed ‘too many files open’ issue when processing a large list of input tables. 2015-02-11 17:22:47 +00:00
Tias Maiti 1b1ed3bbcf removed unnecessary lines 2015-02-11 06:18:08 +00:00
Martin Diehl 63434c2ddb corrected error checking for correct type 2015-02-09 08:57:14 +00:00
Martin Diehl 7edd209ce4 corrected wrong name in add..., more verbose error checking for geom_from... 2015-02-07 22:22:28 +00:00
Martin Diehl 6140285ddd small changes (use ip.x instead of 1_ip). Probably we should modify postResults to use the 1_, 2_, 3_, standard notation for ip as well 2015-02-07 18:13:51 +00:00
Martin Diehl e4a94aa72b put changes on algorithm from geom_fromEuclideanDistance into addEuclideanDistance 2015-02-07 17:11:46 +00:00
Tias Maiti 2c9c04eb76 added script to replace all rows of an ASCII table by a single row containing their average 2015-01-23 00:57:10 +00:00
Martin Diehl 5be9a75cff fixed indentation 2015-01-22 09:04:01 +00:00
Martin Diehl c08f704dee added Id + a little help 2015-01-07 19:29:27 +00:00
Tias Maiti ca58216134 added missing math module import 2015-01-05 12:25:03 +00:00
Martin Diehl 3e3c13bf0b added missing math module import 2015-01-04 21:02:17 +00:00
Martin Diehl 5e8fff13d9 worked on the vtk binary out, still some problems with multicomponent datatypes 2014-12-18 21:46:38 +00:00
Martin Diehl 6604d0f8e8 polishing 2014-12-18 19:26:52 +00:00
Philip Eisenlohr 89f8ba979e Add x,y coordinates of stereographic projection of given direction (pole) in crystal frame. 2014-12-13 00:12:55 +00:00
Philip Eisenlohr b17dcd7652 added options ’—origin’ and ‘—geom’. Latter interprets the geom-header to derive voxel sizes. 2014-11-18 15:26:59 +00:00
Philip Eisenlohr 461a3fa979 fixed syntax error and added ‘—render’ option to immediately see output on screen 2014-11-18 15:24:09 +00:00
Philip Eisenlohr a3196669ea exchanged deprecated data array read function 2014-11-18 15:22:00 +00:00
Philip Eisenlohr 7136db1fd8 fixed syntax error: ’options.error’ —> ‘parser.error’ for error handling 2014-11-18 15:20:57 +00:00
Philip Eisenlohr 99ffa554eb added ‘1_*’ to ‘*’ as possible column label indicator 2014-11-18 15:20:10 +00:00
Philip Eisenlohr b5ef329f34 changed default position column format from .x,.y,.z to more standard 1_,2_,3_ 2014-11-18 15:18:27 +00:00
Philip Eisenlohr f6741138e7 had badly messed up the file handling in commit 3630. STDIN did not work, files were not checked for existence… 2014-10-29 13:27:40 +00:00
Martin Diehl bdd2d55383 small bug fix for last commit 2014-10-24 06:36:01 +00:00
Philip Eisenlohr 13ba71a314 fixed bug where option.condition was altered in processing of first file, thus preventing additional files from seeing the same user input.
changed file handle setup to allow for large lists of input files.
2014-10-23 21:23:10 +00:00
Martin Diehl dc7a4bb978 using damasks extentable option + correct version string 2014-10-16 14:56:44 +00:00
Martin Diehl ce1f17c9cb worked on the binary vtk out needed for large datasets 2014-10-14 07:13:13 +00:00
Philip Eisenlohr 23ee538dcb shortened syntax. fixed undefined file['croak'] 2014-10-02 04:49:46 +00:00
Philip Eisenlohr 496c3d4bc8 added line breaks identifier and $Id$ flag 2014-09-25 21:54:42 +00:00
Tias Maiti 78ab14806f fixed bug in parser option type definition 2014-09-21 17:59:06 +00:00
Martin Diehl d07a098724 fixed wrong help introduced with last change on 3Dvisualize 2014-09-19 09:50:26 +00:00
Martin Diehl a7d831de06 forgot to import python module 2014-09-15 10:07:52 +00:00
Martin Diehl 5657119b11 updated post processing test: rotateData is doing something, corrected addDeviator defauls 2014-09-12 14:49:26 +00:00
Martin Diehl f2c4db0bb5 correcting help and default, some comments 2014-09-12 14:46:12 +00:00
Martin Diehl afb9a2186b removed explicit default setting: type='string' and action='store' 2014-09-12 14:14:55 +00:00
Martin Diehl 9ba7851c14 fixed bug in calculation of spherical part. Variables in python functions are intent(inout) in Fortran language! 2014-09-12 13:13:05 +00:00
Philip Eisenlohr 5a159dcdfa script to add scalar data and/or RGB color tuples to rectilinear VTK file (*.vtr) 2014-09-05 20:28:39 +00:00
Martin Diehl 6cdcdecdfa post processing scripts are working again.
@Philip: definining one offset for shiftData and one factor for scaleData for tensor/vector/special>1 seems to be more reasonable than per component
2014-08-25 21:13:39 +00:00
Martin Diehl c7837e1f66 changed manual input/output close to class method 2014-08-22 16:58:53 +00:00
Philip Eisenlohr 99e3c9a397 fixed (potentially) buggy rotation of tensors. convention is:
with A v = b
v' = R v
A' = R A R^T
such that
A' v' = R A R^T  R v = R A v (= R b = b', i.e. old result transformed into other coordinate basis)
2014-08-22 15:32:48 +00:00